R version 3.4.2 (2017-09-28)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

Matrix products: default
BLAS: /usr/local/lib64/R/lib/libRblas.so
LAPACK: /usr/local/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_AU.UTF-8       LC_NUMERIC=C               LC_TIME=en_AU.UTF-8        LC_COLLATE=en_AU.UTF-8    
 [5] LC_MONETARY=en_AU.UTF-8    LC_MESSAGES=en_AU.UTF-8    LC_PAPER=en_AU.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] plyr_1.8.4            reshape2_1.4.3        UpSetR_1.3.3          clusterProfiler_3.6.0 DOSE_3.4.0           
 [6] AnnotationHub_2.10.1  BiocGenerics_0.24.0   enpls_6.0             glmnet_2.0-16         Matrix_1.2-12        
[11] scales_1.0.0          ggthemes_4.0.1        ROCR_1.0-7            gplots_3.0.1          PRROC_1.3.1          
[16] caret_6.0-80          lattice_0.20-35       doMC_1.3.5            iterators_1.0.10      foreach_1.4.4        
[21] plotly_4.8.0          ggplot2_3.0.0.9000    pROC_1.12.1           protr_1.5-1          

loaded via a namespace (and not attached):
  [1] fgsea_1.4.1                   colorspace_1.3-2              class_7.3-14                  qvalue_2.10.0                
  [5] pls_2.7-0                     DRR_0.0.3                     bit64_0.9-7                   interactiveDisplayBase_1.16.0
  [9] AnnotationDbi_1.40.0          prodlim_2018.04.18            lubridate_1.7.4               codetools_0.2-15             
 [13] splines_3.4.2                 doParallel_1.0.11             GOSemSim_2.4.1                robustbase_0.93-2            
 [17] RcppRoll_0.3.0                jsonlite_1.5                  broom_0.5.0                   ddalpha_1.3.4                
 [21] GO.db_3.5.0                   kernlab_0.9-27                sfsmisc_1.1-2                 shiny_1.1.0                  
 [25] compiler_3.4.2                httr_1.3.1                    rvcheck_0.1.0                 backports_1.1.2              
 [29] assertthat_0.2.0              lazyeval_0.2.1                later_0.7.3                   htmltools_0.3.6              
 [33] tools_3.4.2                   igraph_1.2.2                  bindrcpp_0.2.2                gtable_0.2.0                 
 [37] glue_1.3.0                    DO.db_2.9                     dplyr_0.7.6                   fastmatch_1.1-0              
 [41] Rcpp_0.12.18                  Biobase_2.38.0                gdata_2.18.0                  nlme_3.1-131.1               
 [45] timeDate_3043.102             gower_0.1.2                   stringr_1.3.1                 mime_0.5                     
 [49] gtools_3.8.1                  DEoptimR_1.0-8                MASS_7.3-49                   ipred_0.9-7                  
 [53] BiocInstaller_1.28.0          promises_1.0.1                yaml_2.2.0                    gridExtra_2.3                
 [57] memoise_1.1.0                 rpart_4.1-13                  stringi_1.2.4                 RSQLite_2.1.1                
 [61] S4Vectors_0.16.0              caTools_1.17.1.1              BiocParallel_1.12.0           lava_1.6.3                   
 [65] geometry_0.3-6                rlang_0.2.2                   pkgconfig_2.0.1               bitops_1.0-6                 
 [69] purrr_0.2.5                   bindr_0.1.1                   spls_2.2-2                    recipes_0.1.3                
 [73] htmlwidgets_1.2               CVST_0.2-2                    bit_1.1-12                    tidyselect_0.2.4             
 [77] magrittr_1.5                  R6_2.2.2                      IRanges_2.12.0                dimRed_0.1.0                 
 [81] DBI_1.0.0                     pillar_1.2.1                  withr_2.1.2                   survival_2.41-3              
 [85] abind_1.4-5                   nnet_7.3-12                   tibble_1.4.2                  KernSmooth_2.23-15           
 [89] grid_3.4.2                    data.table_1.11.4             blob_1.1.1                    ModelMetrics_1.2.0           
 [93] digest_0.6.15                 xtable_1.8-3                  tidyr_0.8.1                   httpuv_1.4.5                 
 [97] stats4_3.4.2                  munsell_0.5.0                 viridisLite_0.3.0             magic_1.5-8