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["Table S1. RLs that were excluded from the analyses."]
[]
["MA line backcross","RL","Reason"]
["L03","L03_008","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_043 R2","No fitness data for replicate 2"]
["L03","L03_047","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_058","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_060","> 10% missing data"]
["L03","L03_061","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_063","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_067","> 10% missing data"]
["L03","L03_070","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_072","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_073","> 10% missing data"]
["L03","L03_088","> 10% missing data"]
["L03","L03_101","> 10% missing data"]
["L03","L03_110","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_111","> 10% missing data"]
["L03","L03_117","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_122","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_125","> 10% missing data"]
["L03","L03_126","> 10% missing data"]
["L03","L03_130","> 10% missing data"]
["L03","L03_135","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_136","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_137","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_145","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_167","> 10% missing data"]
["L03","L03_174","> 10% missing data"]
["L03","L03_175","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_178","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_185","> 10% missing data"]
["L03","L03_189","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_190","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_202","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_211","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_212","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_218","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_230","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_242","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_243","> 10% missing data"]
["L03","L03_251","> 10% missing data"]
["L03","L03_262","> 10% missing data, > 5% heterozygous calls"]
["L03","L03_266","> 10% missing data"]
["L03","L03_270","> 10% missing data, > 5% heterozygous calls"]
["L06","L06_021","> 10% missing data"]
["L06","L06_065","Ancestral (MA line ancestor)"]
["L06","L06_066","Ancestral (MA line ancestor)"]
["L06","L06_067","Ancestral (MA line ancestor)"]
["L06","L06_068","Ancestral (MA line ancestor)"]
["L06","L06_069","Ancestral (MA line ancestor)"]
["L06","L06_070","Ancestral (MA line ancestor)"]
["L06","L06_071","Ancestral (MA line ancestor)"]
["L06","L06_072","Ancestral (MA line ancestor)"]
["L06","L06_073","Ancestral (MA line ancestor)"]
["L06","L06_074","Ancestral (MA line ancestor)"]
["L06","L06_075","Ancestral (MA line ancestor)"]
["L06","L06_076","Ancestral (MA line ancestor)"]
["L06","L06_077","Ancestral (compatible ancestor)"]
["L06","L06_078","Ancestral (MA line ancestor)"]
["L06","L06_079","Ancestral (MA line ancestor)"]
["L06","L06_080","Ancestral (MA line ancestor)"]
["L06","L06_081","Ancestral (MA line ancestor)"]
["L06","L06_082","Ancestral (MA line ancestor)"]
["L06","L06_083","Ancestral (MA line ancestor)"]
["L06","L06_084","Ancestral (MA line ancestor)"]
["L06","L06_085","Ancestral (MA line ancestor)"]
["L06","L06_086","Ancestral (MA line ancestor)"]
["L06","L06_087","Ancestral (MA line ancestor)"]
["L06","L06_088","Ancestral (MA line ancestor)"]
["L06","L06_089","Ancestral (MA line ancestor)"]
["L06","L06_090","Ancestral (MA line ancestor)"]
["L06","L06_091","Ancestral (MA line ancestor)"]
["L06","L06_092","Ancestral (MA line ancestor)"]
["L06","L06_093","Ancestral (MA line ancestor)"]
["L06","L06_094","Ancestral (MA line ancestor)"]
["L06","L06_095","Ancestral (MA line ancestor)"]
["L06","L06_096","Ancestral (MA line ancestor)"]
["L06","L06_103","> 10% missing data"]
["L06","L06_107","> 10% missing data, > 5% heterozygous calls"]
["L06","L06_111","> 10% missing data, > 5% heterozygous calls"]
["L06","L06_114","> 10% missing data"]
["L06","L06_116","> 10% missing data, > 5% heterozygous calls"]
["L06","L06_118","> 10% missing data, > 5% heterozygous calls"]
["L06","L06_124","> 10% missing data, > 5% heterozygous calls"]
["L06","L06_143","> 10% missing data"]
["L06","L06_156","Not sent off for genotyping"]
["L06","L06_161","Not sent off for genotyping"]
["L06","L06_163","> 10% missing data, > 5% heterozygous calls"]
["L06","L06_186","> 10% missing data"]
["L06","L06_267","> 10% missing data, > 5% heterozygous calls"]
["L06","L06_271","> 10% missing data, > 5% heterozygous calls"]
["L06","L06_272","> 10% missing data"]
["L06","L06_273","> 10% missing data"]
["L06","L06_275 R1","No fitness data for replicate 1"]
["L06","L06_276","> 10% missing data"]
["L07","L07_016","> 10% missing data, > 5% heterozygous calls"]
["L07","L07_019","> 10% missing data, > 5% heterozygous calls"]
["L07","L07_026","> 10% missing data"]
["L07","L07_035","> 10% missing data"]
["L07","L07_036","> 10% missing data"]
["L07","L07_037","> 10% missing data"]
["L07","L07_049","> 10% missing data"]
["L07","L07_080","> 10% missing data, > 5% heterozygous calls"]
["L07","L07_097","> 10% missing data, > 5% heterozygous calls"]
["L07","L07_111","> 10% missing data, > 5% heterozygous calls"]
["L07","L07_115","> 10% missing data, > 5% heterozygous calls"]
["L07","L07_119","> 10% missing data, > 5% heterozygous calls"]
["L07","L07_14 R2","No fitness data for replicate 2"]
["L07","L07_150 R2","No fitness data for replicate 2"]
["L07","L07_154","> 10% missing data, > 5% heterozygous calls"]
["L07","L07_157","> 10% missing data"]
["L07","L07_169","> 10% missing data"]
["L07","L07_175","> 10% missing data"]
["L07","L07_186","> 10% missing data, > 5% heterozygous calls"]
["L07","L07_209","> 10% missing data, > 5% heterozygous calls"]
["L07","L07_210","> 10% missing data, > 5% heterozygous calls"]
["L07","L07_215","> 10% missing data"]
["L07","L07_230","> 10% missing data"]
["L07","L07_232","> 10% missing data"]
["L07","L07_238","> 10% missing data"]
["L07","L07_267","> 10% missing data, > 5% heterozygous calls"]
["L07","L07_270","Not sent off for genotyping"]
["L07","L07_274","> 10% missing data, > 5% heterozygous calls"]
["L07","L07_277","> 10% missing data"]
["L09","L09_040","> 10% missing data, > 5% heterozygous calls"]
["L09","L09_048","> 10% missing data"]
["L09","L09_055","> 10% missing data, > 5% heterozygous calls"]
["L09","L09_061","> 10% missing data"]
["L09","L09_063","> 10% missing data"]
["L09","L09_064","> 10% missing data, > 5% heterozygous calls"]
["L09","L09_072","> 10% missing data, > 5% heterozygous calls"]
["L09","L09_089","> 10% missing data"]
["L09","L09_091","> 10% missing data"]
["L09","L09_092","> 10% missing data"]
["L09","L09_117","Not sent off for genotyping"]
["L09","L09_170","> 10% missing data, > 5% heterozygous calls"]
["L09","L09_179","> 10% missing data, > 5% heterozygous calls"]
["L09","L09_187","> 10% missing data, > 5% heterozygous calls"]
["L09","L09_257","> 10% missing data, > 5% heterozygous calls"]
["L09","L09_284","> 10% missing data"]
["L09","L09_58 R2","No fitness data for replicate 2"]
["L11","L11_006 R1","No fitness data for replicate 1"]
["L11","L11_021 R1","No fitness data for replicate 1"]
["L11","L11_022 R2","No fitness data for replicate 2"]
["L11","L11_059","> 10% missing data"]
["L11","L11_085","> 10% missing data"]
["L11","L11_168","Not sent off for genotyping"]
["L11","L11_252","Not sent off for genotyping"]
["L11","L11_257","Ancestral (compatible ancestor)"]
["L11","L11_258","Ancestral (compatible ancestor)"]
["L11","L11_260","Ancestral (compatible ancestor)"]
["L11","L11_261","Ancestral (compatible ancestor)"]
["L11","L11_264","Ancestral (compatible ancestor)"]
["L11","L11_270","Ancestral (compatible ancestor)"]
["L11","L11_272","Ancestral (compatible ancestor)"]
["L11","L11_277","Ancestral (compatible ancestor)"]
["L11","L11_280","Ancestral (compatible ancestor)"]
["L11","L11_283","Ancestral (compatible ancestor)"]
["L11","L11_285","Ancestral (compatible ancestor)"]
["L11","L11_286","Ancestral (compatible ancestor)"]
["L14","L14_008","> 10% missing data"]
["L14","L14_016","> 10% missing data"]
["L14","L14_018","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_033","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_034","> 10% missing data"]
["L14","L14_035","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_036","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_038","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_039","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_040","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_041","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_082","> 10% missing data"]
["L14","L14_083","> 10% missing data"]
["L14","L14_089","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_090","> 10% missing data"]
["L14","L14_093","Not sent off for genotyping"]
["L14","L14_101","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_111","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_119","> 10% missing data + heterozygous calls"]
["L14","L14_121","> 10% missing data"]
["L14","L14_129","> 10% missing data"]
["L14","L14_142","> 10% missing data"]
["L14","L14_146","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_148","> 10% missing data"]
["L14","L14_151","> 10% missing data"]
["L14","L14_153","> 10% missing data"]
["L14","L14_156","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_161","> 10% missing data"]
["L14","L14_164","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_179","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_181","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_193","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_194","> 10% missing data"]
["L14","L14_203","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_209","> 5% heterozygous calls"]
["L14","L14_211","> 10% missing data"]
["L14","L14_212","> 5% heterozygous calls"]
["L14","L14_215","> 5% heterozygous calls"]
["L14","L14_219","> 10% missing data"]
["L14","L14_231","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_232","> 10% missing data"]
["L14","L14_237","Not sent off for genotyping"]
["L14","L14_240","> 10% missing data"]
["L14","L14_244","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_245","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_246","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_252","> 10% missing data"]
["L14","L14_254","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_262","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_267","Ancestral (compatible ancestor)"]
["L14","L14_274","> 10% missing data, > 5% heterozygous calls"]
["L14","L14_285","> 10% missing data, > 5% heterozygous calls"]