gene_ID gene_name hit_category replicate1_alleles_with_phenotype replicate1_alleles_without_phenotype replicate1_p-value replicate1_FDR replicate2_alleles_with_phenotype replicate2_alleles_without_phenotype replicate2_p-value replicate2_FDR predalgo_localization GreenCut_membership light-dark_transition_regulated diurnally_regulated_cluster defline description synonyms PFAM Panther KOG KEGG_ec KEGG_Orthology Gene_Ontology_terms best_arabidopsis_TAIR10_hit_name best_arabidopsis_TAIR10_hit_symbol best_arabidopsis_TAIR10_hit_defline Cre02.g111550 higher-confidence candidate 10 8 4.60682491267e-11 4.0775007302e-07 6 12 1.04933181322e-05 0.0151967048645 SP n - 17 - - g2296.t1 PF00069 PTHR23257:SF311,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT4G24480.1 - Protein kinase superfamily protein Cre09.g389615 higher-confidence candidate 5 0 3.63351070356e-08 0.000160801016186 5 0 2.55297235374e-08 0.00022596358303 M n - 4 - - g9646.t1,Cre02.g124700.t1.1,Cre02.g124700.t1.2 - PTHR23083,PTHR23083:SF95 - - - - AT3G17040.1 HCF107 high chlorophyll fluorescent 107 Cre11.g467712 higher-confidence candidate 7 7 1.08119823286e-07 0.000318989518635 7 7 6.69099013937e-08 0.000296109768618 M n - - - - g11642.t1,Cre18.g743450.t1.1 PF00686 - KOG0978 - - GO:0003824,GO:0005975 AT5G05180.1 - - Cre01.g027150 HEL5,CPLD46 higher-confidence candidate 5 1 2.12093371296e-07 0.000375447685868 5 1 1.49303602318e-07 0.000330371546028 M Y - - DEAD/DEAH-box helicase DEAD/DEAH-box helicase, possibly plastid targeted. Plant-lineage-and-diatoms conserved protein. Previously annotated as CPLD46 g621.t1,CPLD46,HEL5 PF08148,PF00270 PTHR11752:SF2,PTHR11752 KOG0947 - - GO:0005524,GO:0016818,GO:0003676,GO:0008026 AT1G70070.1 EMB25,ISE2,PDE317 DEAD/DEAH box helicase, putative Cre09.g394150 RAA1 higher-confidence candidate 5 1 2.12093371296e-07 0.000375447685868 5 1 1.49303602318e-07 0.000330371546028 M n - - - - g9405.t1 - - - - - - - - - Cre03.g194200 PDH2 pyruvate dehydrogenase subunit; see Methods 4 1 5.43581956675e-06 0.00801873983089 4 1 4.10574723903e-06 0.00726799376253 C n - 4 Pyruvate dehydrogenase E1 beta subunit Putative Pyruvate dehydrogenase (lipoamide); pyruvate dehydrogenase E1 beta subunit, probably plastid precursor; similar to Arabidopsis PDH E1 beta (GenBank NP_174304) and predicted organelle targeting sequence by Target-P g4019.t1,Cre03.g194200.t1.1,PDH2 PF02779,PF02780 PTHR11624:SF42,PTHR11624 KOG0524 1.2.4.1 K00162 GO:0003824,GO:0008152 AT1G30120.1 PDH-E1 BETA pyruvate dehydrogenase E1 beta Cre13.g581850 higher-confidence candidate 5 5 7.98129059129e-06 0.0100917718605 2 8 0.0350729792749 1.0 M n upregulated 4 - - g14288.t1,Cre13.g581850.t1.1 PF03109 PTHR10566,PTHR10566:SF10 KOG1235 - - - AT4G31390.1 - Protein kinase superfamily protein Cre13.g566400 OPR55 higher-confidence candidate 4 2 1.5883271958e-05 0.0175728550125 4 2 1.20186345104e-05 0.0151967048645 M n upregulated - - - g13937.t1,Cre13.g566400.t1.1 - - - - - - - - - Cre14.g616600 higher-confidence candidate 4 3 3.60980413984e-05 0.0213002509611 4 3 2.73643417344e-05 0.0175498869086 M n - 6 - - g14855.t1,Cre14.g616600.t1.1 PF00350,PF02581 PTHR11649,PTHR11649:SF44 - - - GO:0003924,GO:0005525,GO:0004789,GO:0009228 AT1G03160.1 FZL FZO-like Cre06.g281800 higher-confidence candidate 3 0 3.43111819132e-05 0.0213002509611 3 0 2.77593963078e-05 0.0175498869086 C n upregulated 5 - - g6555.t1,Cre06.g281800.t1.1 PF09353 - - - - - - - - Cre12.g531050 RAA3 higher-confidence candidate 3 0 3.43111819132e-05 0.0213002509611 3 0 2.77593963078e-05 0.0175498869086 C n - 10 PsaA mRNA maturation factor 3 Trans-splicing factor for chloroplast psaA mRNA exon 1 g13071.t1 - - - - - - - - - Cre10.g423500 HMOX1,HMO1 higher-confidence candidate 3 0 3.43111819132e-05 0.0213002509611 3 0 2.77593963078e-05 0.0175498869086 C Y - 7 Heme oxygenase Heme oxygenase; HMOX; HO; Catalyzes the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide; Involved in the synthesis g10475.t1,Cre10.g423500.t1.1,HMO1 PF01126 PTHR10720 KOG4480 - - GO:0004392,GO:0006788,GO:0055114 AT1G69720.1 HO3 heme oxygenase 3 Cre01.g014000 higher-confidence candidate 3 0 3.43111819132e-05 0.0213002509611 3 0 2.77593963078e-05 0.0175498869086 C n - 4 - - g342.t1,Cre01.g014000.t1.1 - - - - - - - - - Cre03.g185550 SEBP1,SBP1 higher-confidence candidate 3 0 3.43111819132e-05 0.0213002509611 3 0 2.77593963078e-05 0.0175498869086 C n - 6 Sedoheptulose-1,7-bisphosphatase Sedoheptulose-1,7-bisphosphatase (EC 3.1.3.37), chloroplast precursor; 98% identical to Chlamydomonas SBPase cDNA sequence S17P [GenBank CAA52439, PMID: 8165256], but is less consistent with the Chlamydomonas SBPase AA sequence deduced from the genomic se g3845.t1,Cre03.g185550.t1.1,SBP1 PF00316 PTHR11556,PTHR11556:SF2 KOG1458 3.1.3.37 K01100 GO:0005975,GO:0042578 AT3G55800.1 SBPASE sedoheptulose-bisphosphatase Cre12.g524500 RMT2 higher-confidence candidate 3 0 3.43111819132e-05 0.0213002509611 3 0 2.77593963078e-05 0.0175498869086 O n - 4 Rubisco small subunit N-methyltransferase SET domain-containing methyltransferase; catalyzes methylation of the N-terminal alpha-amino group of the processed form of RuBisCO small subunit prior to holoenzyme assembly. g12913.t1,Cre12.g524500.t1.1,RMT2 PF09273 PTHR13271 KOG1337 - - - AT3G07670.1 - Rubisco methyltransferase family protein Cre16.g658950 higher-confidence candidate 2 2 0.00606057604598 0.909189128525 3 1 0.000108512865558 0.0564969042974 C n upregulated 15 - - g15920.t1 - - - - - - - - - Cre02.g073900 higher-confidence candidate 3 1 0.000133896031648 0.0697125750657 3 1 0.000108512865558 0.0564969042974 C n - 17 - - g1310.t1 PF03055 PTHR10543,PTHR10543:SF6 KOG1285 - - - AT4G32810.1 ATCCD8,CCD8,MAX4 carotenoid cleavage dioxygenase 8 Cre03.g188700 PLAP6,PLP6 higher-confidence candidate 3 1 0.000133896031648 0.0697125750657 3 1 0.000108512865558 0.0564969042974 C n upregulated 4 Plastid lipid associated protein, Fibrillin Plastid-lipid associated protein; Arabidopsis homologue is in plastoglobuli (PMID: 16461379). Previously annotated as PLAP6 g3908.t1,Cre03.g188700.t1.1,PLP6 PF04755 - - - - GO:0005198,GO:0009507 AT5G09820.2 - Plastid-lipid associated protein PAP / fibrillin family protein Cre16.g659050 higher-confidence candidate 4 6 0.000200177579915 0.098431764435 4 6 0.000152568429841 0.0750212873622 C n - 4 - - g15922.t1 PF02776,PF00561,PF01188,PF00425 PTHR11236 - - - GO:0030976 AT1G68890.1 - magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases Cre06.g259100 higher-confidence candidate 1 4 0.152163117949 1.0 3 2 0.000265123543005 0.117330423957 C n - - - - g5825.t1 - - KOG0978 - - - - - - Cre08.g358350 OPR34,TDA1 higher-confidence candidate 3 2 0.000326586349793 0.152137672738 3 2 0.000265123543005 0.117330423957 C n - 3 - - g8334.t1,OPR34 - - - - - - - - - Cre13.g574000 CLV1,GEF1 higher-confidence candidate 1 11 0.327082943647 1.0 4 8 0.000342500387249 0.144355758454 O n - 11 Voltage-gated chloride channel Voltage gated chloride channel. Previously annotated as GEF1 g14110.t1,CLV1,GEF1 PF00571,PF00654 PTHR11689:SF44,PTHR11689 KOG0474 - - GO:0005515,GO:0005247,GO:0006821,GO:0016020,GO:0055085 AT5G26240.1 ATCLC-D,CLC-D chloride channel D Cre13.g578650 CPLD10,NUOAF5 higher-confidence candidate 3 3 0.000637289427488 0.260311011932 3 3 0.000518228451458 0.208492728357 C Y upregulated 4 Similar to complex I intermediate-associated protein 30 Similar to complex I intermediate-associated protein 30; see NUOAF1. Also resembles NmrA negative transcriptional regulator protein family. Conserved expressed protein g14215.t1,NUOAF5 PF05368,PF08547 PTHR15020:SF11,PTHR15020 KOG1203 - - - AT1G16720.1 HCF173 high chlorophyll fluorescence phenotype 173 Cre01.g037800 TRX21 higher-confidence candidate 3 3 0.000637289427488 0.260311011932 1 5 0.168357281403 1.0 O n - 10 - - g847.t1,Cre01.g037800.t1.1,TRX21 PF00085 PTHR21148,PTHR21148:SF11 KOG1672 - - GO:0045454 AT2G18990.1 TXND9 thioredoxin domain-containing protein 9 homolog Cre03.g185200 CPL3,MPA6 higher-confidence candidate 3 4 0.00108818296706 0.260311011932 3 4 0.000886376533759 0.238514088352 C Y - 8 Metallophosphoesterase/metallo-dependent phosphatase Metallophosphoesterase/metallo-dependent phosphatase. Plant-lineage conserved protein. Previously annotated as CPL3 g3838.t1,Cre03.g185200.t1.1,CPL3,MPA6 PF00149 PTHR11668,PTHR11668:SF68 KOG0374 - - GO:0016787 AT1G07010.1 - Calcineurin-like metallo-phosphoesterase superfamily protein Cre06.g298300 PPR2,MRL1 higher-confidence candidate 1 1 0.0638960787828 1.0 2 0 0.000916221783298 0.238514088352 C n - - Pentatrichopeptide repeat protein, stabilizes rbcL mRNA Pentatrichopeptide repeat protein, formerly PPR2. Renamed MRL1 by Johnson et al. 2010 [PMID: 20097872]; identified as a protein required for stabilization of rbcL mRNA. g6900.t1,PPR2 PF01535 PTHR24015 - - - - AT4G34830.1 MRL1 Pentatricopeptide repeat (PPR) superfamily protein Cre02.g105650 higher-confidence candidate 2 0 0.00105528613409 0.260311011932 2 0 0.000916221783298 0.238514088352 C n - 4 - - g2166.t1,Cre02.g105650.t1.1 - - - - - - AT5G51545.1 LPA2 low psii accumulation2 Cre10.g448950 higher-confidence candidate 1 1 0.0638960787828 1.0 2 0 0.000916221783298 0.238514088352 C n downregulated 13 - - g11036.t1 PF03372 PTHR12121 - - - - AT3G58560.1 - DNAse I-like superfamily protein Cre01.g045902 higher-confidence candidate 1 1 0.0638960787828 1.0 2 0 0.000916221783298 0.238514088352 C n - 4 - - g1010.t1 PF10609,PF01883,PF06155 PTHR23264,PTHR23264:SF3 KOG3022 - - GO:0055114 AT3G24430.1 HCF101 ATP binding Cre10.g440000 OPR120 higher-confidence candidate 2 0 0.00105528613409 0.260311011932 2 0 0.000916221783298 0.238514088352 C n - 17 - - g10832.t1 - - - - - - - - - Cre07.g341850 EIF2,INFB higher-confidence candidate 2 0 0.00105528613409 0.260311011932 2 0 0.000916221783298 0.238514088352 C n upregulated 4 - - g7951.t1,Cre07.g341850.t1.1,EIF2,INFB PF03144,PF11987,PF00009,PF04760 PTHR23115:SF41,PTHR23115 KOG1145 - K02519 GO:0005525,GO:0003924,GO:0003743,GO:0006413 AT1G17220.1 FUG1 Translation initiation factor 2, small GTP-binding protein Cre02.g073850 CGL54 higher-confidence candidate 2 0 0.00105528613409 0.260311011932 2 0 0.000916221783298 0.238514088352 C Y - 6 Predicted protein Conserved expressed protein of unknown function, related to Photosystem II 11 kDa protein precursor g1309.t1,Cre02.g073850.t1.1 - - - - - - AT1G05385.1 LPA19,Psb27-H1 photosystem II 11 kDa protein-related Cre12.g542569 higher-confidence candidate 0 2 1.0 1.0 2 0 0.000916221783298 0.238514088352 O n - 15 - - g13719.t2,Cre12.g542569.t1.1, g13719.t1 PF00060,PF00497, PF00497,PF00060 PTHR18966 - - K05197 GO:0005215,GO:0006810,GO:0030288,GO:0004970,GO:0005234,GO:0016020, GO:0004970,GO:0005234,GO:0016020,GO:0005215,GO:0006810,GO:0030288 AT1G05200.1 ATGLR3.4,GLR3.4,GLUR3 glutamate receptor 3.4 Cre50.g761497 higher-confidence candidate 2 0 0.00105528613409 0.260311011932 2 0 0.000916221783298 0.238514088352 M n - 18 - - g18408.t1 PF01544 PTHR13890 - - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 AT5G22830.1 ATMGT10,GMN10,MGT10,MRS2-11 magnesium (Mg) transporter 10 Cre12.g497300 TEF2,CAS1 higher-confidence candidate 2 0 0.00105528613409 0.260311011932 2 0 0.000916221783298 0.238514088352 C Y - 6 Rhodanese-like Ca-sensing receptor Rhodanese-like, Ca-sensing receptor, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]. Busch et al. (2010) (Chlamy 2010 Meeting abstract) proposed that this protein g12639.t2,Cre12.g497300.t1.1,TEF2, g12639.t1,TEF2 PF00581 - - - - - AT5G23060.1 CaS calcium sensing receptor Cre12.g524300 CGL71 higher-confidence candidate 2 0 0.00105528613409 0.260311011932 2 0 0.000916221783298 0.238514088352 C Y - 4 Predicted protein Conserved TPR repeat protein related to YCF37 g12909.t1,Cre12.g524300.t1.1 PF00515 PTHR26312:SF36,PTHR26312 - - - GO:0005515 AT1G22700.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre09.g396250 VTE5 higher-confidence candidate 2 0 0.00105528613409 0.260311011932 1 1 0.0596030753661 1.0 SP n downregulated 4 Phosphatidate cytidylyltransferase Phosphatidate cytidylyltransferase. Related to VTE5 in Arabidopsis (PMID: 16361393). Phytol kinase-related protein g9364.t1,Cre09.g396250.t1.1,VTE5 PF01148 PTHR13205 KOG4453 - - GO:0016020,GO:0016772 AT5G04490.1 VTE5 vitamin E pathway gene 5 Cre10.g430150 REP27,LPA1 higher-confidence candidate 2 0 0.00105528613409 0.260311011932 1 1 0.0596030753661 1.0 C n - 4 - - g10623.t1,Cre10.g430150.t1.1,LPA1,REP27 PF00515,PF11998 - - - - GO:0005515 AT1G02910.1 LPA1 tetratricopeptide repeat (TPR)-containing protein Cre07.g316050 CDJ2 higher-confidence candidate 2 0 0.00105528613409 0.260311011932 1 1 0.0596030753661 1.0 M n upregulated 4 Chloroplast DnaJ-like protein Class III J-domain protein, not involved in protein refolding; binds and delivers VIPP1 to HSP70B; conserved in higher plants, but not in cyanobacteria g7310.t1,Cre07.g316050.t1.1 PF00226 PTHR24077 - - K09515 GO:0031072 AT5G59610.1 - Chaperone DnaJ-domain superfamily protein Cre06.g273700 HCF136 higher-confidence candidate 2 0 0.00105528613409 0.260311011932 1 1 0.0596030753661 1.0 C n upregulated 4 - - g6140.t1,Cre06.g273700.t1.1,HCF136 PF02012 - - - - - AT5G23120.1 HCF136 photosystem II stability/assembly factor, chloroplast (HCF136) Cre10.g452800 LCIB higher-confidence candidate 2 0 0.00105528613409 0.260311011932 1 1 0.0596030753661 1.0 C n - 4 Low-CO2-inducible protein Low-CO2 inducible protein (identical to BAD16683, PMID: 15235119); homologous to LCIC; TargetP prediction: Chloroplast (confidence: 5); regulated by CCM1. Mutations in this gene include mutants pmp1 (Spalding et al., 1983 [PMID: 16663206]) and ad1 (Wang g11120.t1,Cre10.g452800.t1.1 - - - - - - - - - Cre10.g429650 higher-confidence candidate 2 0 0.00105528613409 0.260311011932 1 1 0.0596030753661 1.0 O n - 9 - - g10613.t1 - - - - - - - - - Cre01.g008550 higher-confidence candidate 2 0 0.00105528613409 0.260311011932 1 1 0.0596030753661 1.0 O n - - - - g216.t1 PF00069 PTHR24058,PTHR24058:SF21 KOG0667 - - GO:0004672,GO:0005524,GO:0006468 AT1G73450.1 - Protein kinase superfamily protein Cre13.g586750 higher-confidence candidate 3 4 0.00108818296706 0.260311011932 2 5 0.0173837473802 1.0 O n - 2 - - g14396.t1, g14396.t3, g14396.t2,Cre13.g586750.t1.1 - PTHR12363 - - - - AT5G62600.1 - ARM repeat superfamily protein Cre07.g332750 PSL2 lower-confidence candidateI 3 5 0.00169889929754 0.395709412699 2 6 0.0227162766329 1.0 O n - - Signal peptide peptidase-like protein Contains YD and GxGD motifs typical of typical of A22 family aspartic proteases, presenilins/signal peptide peptidases; belongs to SPP type, cleaving only type II transmembrane helices (C-terminus towards cytosol); probably involved in clearance of signal g7740.t1,PSL2 - - - - - - - - - Cre09.g388372 OPR39,RAT2 lower-confidence candidateI 3 6 0.00248669941419 0.527185311111 3 6 0.00203233670068 0.513948918221 C n - - Chloroplast tscA maturation factor Chloroplast tscA maturation factor; has been reported as necessary, together with nearby divergent RAT1, for complementation of mutant deficient in tscA maturation (PMID: 16115062); no homologues in other organisms, except Volvox. g9533.t1,Cre09.g388372.t1.1,OPR39 - - - - - - - - - Cre17.g703200 lower-confidence candidateI 2 1 0.00309723603861 0.527185311111 2 1 0.00269314655773 0.518196525707 O n - 10 - - g17049.t1,Cre17.g703200.t1.1 PF03765,PF00650 PTHR23324,PTHR23324:SF5 KOG1471 - - - AT4G36490.1 ATSFH12,SFH12 SEC14-like 12 Cre17.g698750 OPR104 lower-confidence candidateI 2 1 0.00309723603861 0.527185311111 2 1 0.00269314655773 0.518196525707 M n - - - - g16948.t1,Cre17.g698750.t1.1 - - - - - - - - - Cre06.g264800 HTB14 lower-confidence candidateI 2 1 0.00309723603861 0.527185311111 2 1 0.00269314655773 0.518196525707 O n - - Histone H2B Replication-linked Histone H2B g5948.t1,Cre06.g264800.t1.1,HTB14 PF00125 PTHR23428 KOG1744 - K11252 GO:0003677,GO:0000786,GO:0005634,GO:0006334 AT3G45980.1 H2B,HTB9 Histone superfamily protein Cre06.g250850 MSH1 lower-confidence candidateI 1 2 0.0942955001713 1.0 2 1 0.00269314655773 0.518196525707 O n - 7 DNA mismatch repair protein, MutS homolog DNA mismatch repair protein, MutS homolog. Forms a complex with MutL (see MLH genes) g5618.t1,MSH1 PF01624,PF00488 PTHR11361:SF68,PTHR11361 - - - GO:0005524,GO:0006298,GO:0030983 AT3G24320.1 ATMSH1,CHM,CHM1,MSH1 MUTL protein homolog 1 Cre13.g604501 lower-confidence candidateI 2 1 0.00309723603861 0.527185311111 2 1 0.00269314655773 0.518196525707 O n - 8 - - g14583.t1 PF04564 - - - - GO:0000151,GO:0004842,GO:0016567 - - - Cre08.g375950 EXR1 lower-confidence candidateI 2 1 0.00309723603861 0.527185311111 2 1 0.00269314655773 0.518196525707 C n - 15 UvrB containing protein UvrB domain-containing protein. Interpro IPR001943. Family includes helicase subunit of DNA excision repair complex. Part of this gene model (by overlap) was previously annotated as EIF2Aa, which is not correct g8857.t1,EXR1 PF02151 - - - - GO:0003677,GO:0004518,GO:0006289 AT3G09250.1 - Nuclear transport factor 2 (NTF2) family protein Cre01.g016514 DLD2 pyruvate dehydrogenase subunit; see Methods 2 1 0.00309723603861 0.527185311111 2 1 0.00269314655773 0.518196525707 C Y - 6 - - g392.t1 PF07992,PF02852,PF00070 PTHR22912:SF49,PTHR22912 KOG1335 1.8.1.4 K00382 GO:0005737,GO:0016491,GO:0045454,GO:0050660,GO:0055114 AT3G16950.2 LPD1,ptlpd1 lipoamide dehydrogenase 1 Cre12.g554800 PRK1 lower-confidence candidateI 2 1 0.00309723603861 0.527185311111 2 1 0.00269314655773 0.518196525707 C Y - 6 Phosphoribulokinase Phosphoribulokinase, chloroplast precursor. Mapped in C. reinhardtii as the AC214 locus on linkage group XII/XIII. Calvin cycle enzyme. Activity regulated by light by way of chloroplastic thioredoxins and by formation of a complex with GAPDH and CP12 [PMI g13438.t1,Cre12.g554800.t1.1 PF00485 PTHR10285 KOG4203 2.7.1.19 K00855 GO:0005524,GO:0008152,GO:0016301 AT1G32060.1 PRK phosphoribulokinase Cre09.g388356 TBC2 lower-confidence candidateI 2 1 0.00309723603861 0.527185311111 2 1 0.00269314655773 0.518196525707 C n - 4 Translation factor for chloroplast psbC mRNA Factor specifically required for the translation of the chloroplast psbC mRNA [PMID: 12045185] g9611.t1,Cre02.g123050.t1.1,TBC2 - PTHR21495:SF9,PTHR21495 - - - - - - - Cre09.g396920 lower-confidence candidateI 1 2 0.0942955001713 1.0 2 1 0.00269314655773 0.518196525707 C n - 11 - - g9850.t1,Cre02.g133700.t1.1,Cre02.g133700.t1.2 - - - - - - - - - Cre12.g560550 MTF1 lower-confidence candidateI 2 1 0.00309723603861 0.527185311111 2 1 0.00269314655773 0.518196525707 C n - 4 Methionyl-tRNA formyltransferase Putative methionyl-tRNA formyltransferase (methionyl-tRNA transformylase [MTF]). Possibly mitochondrial g13308.t1,MTF1 PF00551,PF02911 PTHR11138 KOG3082 2.1.2.9 K00604 GO:0009058,GO:0016742 AT1G66520.1 pde194 formyltransferase, putative Cre05.g244450 lower-confidence candidateI 2 1 0.00309723603861 0.527185311111 1 2 0.0880580397687 1.0 M n - 10 - - g5245.t1 - - - - - - - - - Cre17.g703000 lower-confidence candidateI 2 1 0.00309723603861 0.527185311111 1 2 0.0880580397687 1.0 M n - - - - g17042.t1 PF00686 - - - - GO:0003824,GO:0005975 AT5G01260.1 - Carbohydrate-binding-like fold Cre01.g044150 lower-confidence candidateI 2 1 0.00309723603861 0.527185311111 1 2 0.0880580397687 1.0 O n - 13 - - g987.t1 PF05971 PTHR13393 - 2.1.1.181 K06970 GO:0008168 AT2G21070.1 FIO1 methyltransferases Cre10.g454200 lower-confidence candidateI 2 1 0.00309723603861 0.527185311111 1 2 0.0880580397687 1.0 C n - 8 - - g11151.t1,Cre10.g454200.t1.1 - - - - - - - - - Cre17.g715801 lower-confidence candidateI 1 11 0.327082943647 1.0 3 9 0.00497176000279 0.81953742081 M n - 10 - - g17328.t1,Cre17.g715801.t1.1 - - - - - - - - - Cre13.g568050 lower-confidence candidateI 1 3 0.123707141532 1.0 2 2 0.00527778024926 0.81953742081 O n - 18 - - g13978.t1 PF00069 PTHR24343,PTHR24343:SF58 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT4G33950.1 ATOST1,OST1,P44,SNRK2-6,SNRK2.6,SRK2E Protein kinase superfamily protein Cre10.g429400 MCG1 lower-confidence candidateI 2 2 0.00606057604598 0.909189128525 2 2 0.00527778024926 0.81953742081 O n - 3 - - g10607.t1 - - - - - - - - - Cre01.g044650 lower-confidence candidateI 2 2 0.00606057604598 0.909189128525 2 2 0.00527778024926 0.81953742081 M n downregulated 13 - - g998.t1,Cre01.g044650.t1.1 - PTHR10774:SF28,PTHR10774 - - - - AT1G20080.1 ATSYTB,NTMC2T1.2,NTMC2TYPE1.2,SYT2,SYTB Calcium-dependent lipid-binding (CaLB domain) family protein Cre01.g012200 lower-confidence candidateI 2 2 0.00606057604598 0.909189128525 2 2 0.00527778024926 0.81953742081 O n - 17 - - g303.t2, g303.t1 PF03110,PF00651 PTHR24412 - - - GO:0003677,GO:0005634,GO:0005515 AT3G60030.1 SPL12 squamosa promoter-binding protein-like 12 Cre11.g476100 MCD1 lower-confidence candidateI 2 2 0.00606057604598 0.909189128525 2 2 0.00527778024926 0.81953742081 M n upregulated 3 - - g11826.t1 - - - - - - - - - Cre11.g467744 lower-confidence candidateI 2 2 0.00606057604598 0.909189128525 2 2 0.00527778024926 0.81953742081 O n - 10 - - g11674.t1,Cre22.g764450.t1.1 - - - - - - - - - Cre02.g091750 lower-confidence candidateI 2 2 0.00606057604598 0.909189128525 2 2 0.00527778024926 0.81953742081 M n - - - - g1719.t1, g1719.t3, g1719.t2,Cre02.g091750.t1.1 PF00686 - - - - GO:0003824,GO:0005975 AT5G26570.1, AT5G26570.2 ATGWD3,OK1,PWD catalytics;carbohydrate kinases;phosphoglucan, water dikinases Cre12.g514400 lower-confidence candidateI 1 3 0.123707141532 1.0 2 2 0.00527778024926 0.81953742081 O n upregulated 4 - - g12695.t2,Cre12.g514400.t1.1, g12695.t1 PF00249 PTHR12802:SF3,PTHR12802 - - K12133 - AT2G46830.1 CCA1 circadian clock associated 1 Cre13.g572100 lower-confidence candidateI 1 3 0.123707141532 1.0 2 2 0.00527778024926 0.81953742081 O n - 18 - - g14069.t1 - - - - - - AT4G10930.1 - - Cre16.g649433 lower-confidence candidateI 1 3 0.123707141532 1.0 2 2 0.00527778024926 0.81953742081 O n downregulated 3 - - g15714.t1 PF00847 - - - - GO:0003700,GO:0006355 AT3G16770.1 ATEBP,EBP,ERF72,RAP2.3 ethylene-responsive element binding protein Cre02.g093700 lower-confidence candidateI 3 10 0.00767991157388 1.0 2 11 0.0572670849882 1.0 O n - - - - g1770.t1, g1770.t2 PF12409,PF00702,PF00122 PTHR24093,PTHR24093:SF56 KOG0208 3.6.3.- K13526 GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT5G23630.1 MIA,PDR2 phosphate deficiency response 2 Cre12.g512050 lower-confidence candidateI 3 10 0.00767991157388 1.0 1 12 0.329279161263 1.0 O n - 14 - - g12306.t1 PF00069 PTHR26266,PTHR26266:SF142 - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre04.g214250 AGO2 lower-confidence candidateI 2 12 0.0741305720882 1.0 3 11 0.00786173503382 1.0 O n - 13 Argonaute-like protein Argonaute-like protein presumably involved in posttranscriptional gene silencing/RNA interference g4692.t2,AGO2, g4692.t1,AGO2 PF02170,PF02171,PF08699 PTHR22891 KOG1041 - K11593 GO:0005515 AT1G48410.2 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase Cre14.g617850 lower-confidence candidateI 1 4 0.152163117949 1.0 2 3 0.008619551387 1.0 O n - - - - g14886.t1 - - - - - - - - - Cre17.g720100 lower-confidence candidateI 2 3 0.00988323584235 1.0 2 3 0.008619551387 1.0 M n - - - - g17428.t1,Cre17.g720100.t1.1 - - - - - - - - - Cre02.g119100 CER2 lower-confidence candidateI 2 3 0.00988323584235 1.0 2 3 0.008619551387 1.0 O n upregulated 7 Carboxyesterase-related protein/arylformamidase Carboxyesterase-related protein/arylformamidase; contains esterase/lipase/thioesterase domain. In a tandem arrangement with CER1; similar to an Arabidopsis hypothetical protein with a carboxylesterase domain encoded by F16B3.4; similar to Arabidopsis At1g g2471.t1,Cre02.g119100.t1.1,CER2 PF07859,PF00326 PTHR11559,PTHR11559:SF87 - - - GO:0008152,GO:0016787,GO:0006508,GO:0008236 AT1G26120.1 ICME-LIKE1 alpha/beta-Hydrolases superfamily protein Cre05.g234652 lower-confidence candidateI 1 4 0.152163117949 1.0 2 3 0.008619551387 1.0 O n - - - - g5371.t1,Cre24.g769350.t1.1,Cre24.g769350.t1.2 PF07683,PF02492 PTHR13748:SF11,PTHR13748 - - - - AT1G80480.1 PTAC17 plastid transcriptionally active 17 Cre03.g206369 lower-confidence candidateI 2 3 0.00988323584235 1.0 2 3 0.008619551387 1.0 SP n - 15 - - g4424.t1,Cre19.g754500.t1.1 PF00069 PTHR26393,PTHR26393:SF483 KOG1187 - - GO:0004672,GO:0005524,GO:0006468 AT2G26330.1 ER,QRP1 Leucine-rich receptor-like protein kinase family protein Cre02.g146851 lower-confidence candidateI 1 4 0.152163117949 1.0 2 3 0.008619551387 1.0 O n - 7 - - g2524.t1 PF00069 PTHR23257:SF295,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G62400.1 HT1 Protein kinase superfamily protein Cre12.g492450 SPL18 lower-confidence candidateI 2 3 0.00988323584235 1.0 2 3 0.008619551387 1.0 O n - 4 - - g12102.t1,Cre12.g492450.t1.1,SPL18 PF00271,PF07717,PF04408 PTHR18934 KOG0920 3.6.4.13 K14442 GO:0003676,GO:0004386,GO:0005524 AT2G35920.1 - RNA helicase family protein Cre12.g516300 CGL154 lower-confidence candidateI 2 3 0.00988323584235 1.0 2 3 0.008619551387 1.0 O n - - - - g12735.t1 - - - - - - - - - Cre06.g300500 CYA18,ADCY1 lower-confidence candidateI 2 3 0.00988323584235 1.0 1 4 0.142409436662 1.0 O n - 17 Adenylyl cyclase Protein coded by this gene is most similar to the adenylyl cyclases of Paramecium, Tetrahymena, and Plasmodium. Weber et al. 2004 (Cellular Signalling 16:115-125) suggested that these proteins are potassium channel/cyclase fusion proteins and that they lo g6953.t1,ADCY1,CYA18 PF00211 PTHR11347,PTHR11347:SF76 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre03.g155001 ISA1 lower-confidence candidateI 2 3 0.00988323584235 1.0 1 4 0.142409436662 1.0 C n - 18 - - g3160.t1 PF00128,PF02922 PTHR10357:SF75,PTHR10357 KOG0470 3.2.1.- K02438 GO:0003824,GO:0005975,GO:0043169,GO:0004553 AT2G39930.1 ATISA1,ISA1 isoamylase 1 Cre10.g425050 ROC28,ROC59 lower-confidence candidateI 2 3 0.00988323584235 1.0 1 4 0.142409436662 1.0 M n upregulated 15 - - g10507.t1,ROC28,ROC59 PF00400 PTHR15574,PTHR15574:SF6 KOG1310 - K11807 - AT5G10940.2 - transducin family protein / WD-40 repeat family protein Cre12.g514050 GSF1 lower-confidence candidateI 2 3 0.00988323584235 1.0 1 4 0.142409436662 1.0 C n - 4 Ferredoxin-dependent glutamate synthase Glutamate synthase, ferredoxin-dependent . Also known as CRFG3 (genbank id # AF135592) Could be chloroplast targeted (see model notes) g12689.t1,Cre12.g514050.t1.1,GSF1 PF01645,PF04898,PF01493,PF00310 PTHR11938:SF55,PTHR11938 KOG0399 1.4.7.1 K00284 GO:0006537,GO:0015930,GO:0006807,GO:0055114,GO:0008152,GO:0016491 AT5G04140.1 FD-GOGAT,GLS1,GLU1,GLUS glutamate synthase 1 Cre12.g550800 REV1 lower-confidence candidateI 2 3 0.00988323584235 1.0 1 4 0.142409436662 1.0 M n - 13 Deoxycytidyl transferase Homologous to eukaryotic Rev1 [PMID: 17992532]; UV-revertible gene 1 product; constitutes the complex with translesion DNA polymerase, Polz; nuclear; functions in translesion synthesis (TLS) of damaged DNA g13529.t2,REV1, g13529.t1,REV1 PF00533,PF00817,PF11799 PTHR11076:SF13,PTHR11076 KOG2094 2.7.7.- K03515 GO:0005622,GO:0003684,GO:0003887,GO:0006281 AT5G44750.1 ATREV1,REV1 DNA-directed DNA polymerases Cre06.g309650 lower-confidence candidateI 3 13 0.0139834257924 1.0 3 13 0.0115611498554 1.0 M n - 18 - - g7164.t1, g7164.t2 - - - - - - - - - Cre01.g015500 CGL91 lower-confidence candidateI 5 38 0.0125037228571 1.0 4 39 0.0406714566578 1.0 O Y upregulated 16 - - g373.t1,Cre01.g015500.t1.1 PF00168 PTHR16122 - - - GO:0005515 AT4G34150.1 - Calcium-dependent lipid-binding (CaLB domain) family protein Cre12.g501550 lower-confidence candidateI 1 5 0.179694499711 1.0 2 4 0.0126702128536 1.0 C n - 3 - - g12545.t1,Cre12.g501550.t1.1 - - - - - - - - - Cre16.g668700 lower-confidence candidateI 1 5 0.179694499711 1.0 2 4 0.0126702128536 1.0 SP n downregulated 15 - - g16261.t1,Cre16.g668700.t1.1 - - - - - - - - - Cre09.g402051 CLV4 lower-confidence candidateI 2 4 0.0145062090484 1.0 2 4 0.0126702128536 1.0 O n - - - - g9224.t1,CLV4 PF00654 PTHR11689 KOG0474 - - GO:0005247,GO:0006821,GO:0016020,GO:0055085 AT3G27170.1 ATCLC-B,CLC-B chloride channel B Cre06.g277100 lower-confidence candidateI 2 4 0.0145062090484 1.0 2 4 0.0126702128536 1.0 O n upregulated 6 - - g6211.t1,Cre06.g277100.t1.1 PF03435 PTHR12286 KOG2733 - - - AT5G39410.1 - Saccharopine dehydrogenase Cre10.g424775 CTP2 lower-confidence candidateI 3 13 0.0139834257924 1.0 2 14 0.0830345003773 1.0 C n - 4 - - g10501.t3,Cre10.g424800.t1.3, g10501.t1,Cre10.g424800.t2.1, g10501.t2,Cre10.g424800.t3.1 PF00403, PF00702,PF00122,PF00403, PF00702,PF00122 PTHR24093,PTHR24093:SF26 KOG0207 - - GO:0030001,GO:0046872, GO:0003824,GO:0008152,GO:0000166,GO:0046872, GO:0003824,GO:0008152,GO:0000166,GO:0046872,GO:0030001 AT4G33520.1, AT5G21930.1 ATHMA8,HMA8,PAA2, HMA6,PAA1 P-type ATPase of Arabidopsis 2, P-type ATP-ase 1 Cre14.g611650 ALO2 lower-confidence candidateI 2 4 0.0145062090484 1.0 1 5 0.168357281403 1.0 C n - 18 - - g14742.t1,ALO2 PF01565 PTHR13878,PTHR13878:SF9 - - - GO:0016491,GO:0050660 AT3G47930.2 ATGLDH,GLDH L-galactono-1,4-lactone dehydrogenase Cre05.g235500 KIN7-1 lower-confidence candidateI 2 4 0.0145062090484 1.0 1 5 0.168357281403 1.0 C n - - - - g5415.t1,KIN7-1 PF00225 PTHR24115,PTHR24115:SF176 KOG4280 - - GO:0003777,GO:0005524,GO:0007018 AT2G21380.1 - Kinesin motor family protein Cre08.g370750 lower-confidence candidateI 2 4 0.0145062090484 1.0 1 5 0.168357281403 1.0 SP n - 9 - - g8687.t1, g8687.t2 - - - - - - - - - Cre14.g620600 PHC2 lower-confidence candidateI 9 110 0.0159897396506 1.0 6 113 0.17886965914 1.0 SP n - - Cell wall protein pherophorin-C2 Pherophorin-C2 (PHC2) [PMID: 16367971; Genbank entry DQ196108]; extracellular matrix protein (cell wall protein); belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain. g14956.t1,Cre14.g620600.t1.1,PHC2 PF12499 - - - - - - - - Cre03.g149550 lower-confidence candidateI 2 5 0.0198734194798 1.0 2 5 0.0173837473802 1.0 O n downregulated 18 - - g3042.t1 - - - - - - - - - Cre13.g602400 KIN8-1 lower-confidence candidateI 2 5 0.0198734194798 1.0 2 5 0.0173837473802 1.0 C n - 13 - - g14557.t1,Cre13.g602400.t1.1,KIN8-1 PF00225 PTHR24115,PTHR24115:SF324 KOG0242 - - GO:0003777,GO:0005524,GO:0007018 AT3G49650.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre10.g434600 FAP148 lower-confidence candidateI 0 7 1.0 1.0 2 5 0.0173837473802 1.0 O n - 15 Flagellar Associated Protein Flagellar Associated Protein with cation channel domain, found in the flagellar proteome [PMID: 15998802] g10718.t1,Cre10.g434600.t1.1 PF00400,PF00520 PTHR22847:SF52,PTHR22847 KOG0318 - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre12.g538850 lower-confidence candidateI 1 6 0.206331346417 1.0 2 5 0.0173837473802 1.0 O n - 9 - - g13248.t1 PF00400,PF03451 PTHR13720 KOG2106 - - - AT2G32700.7 LUH LEUNIG_homolog Cre16.g692228 lower-confidence candidateI 1 6 0.206331346417 1.0 2 5 0.0173837473802 1.0 M n upregulated 17 - - g16882.t1,Cre01.g073050.t1.1 PF00069 PTHR26392,PTHR26392:SF117 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G06630.1 - protein kinase family protein Cre16.g652200 MMP9 lower-confidence candidateI 2 5 0.0198734194798 1.0 2 5 0.0173837473802 1.0 SP n - 18 Metalloproteinase of VMP family Belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoprotein g15774.t1,Cre16.g652200.t1.1,MMP9 PF05548 - - - - - - - - Cre03.g196350 lower-confidence candidateI 2 5 0.0198734194798 1.0 2 5 0.0173837473802 1.0 O n - 3 - - g4067.t1,Cre03.g196350.t1.1 PF02810 - - - - - - - - Cre14.g621501 lower-confidence candidateI 1 6 0.206331346417 1.0 2 5 0.0173837473802 1.0 C n - 11 - - g14978.t4,Cre14.g621558.t1.2, g14978.t1,Cre14.g621558.t3.1, g14978.t3,Cre14.g621558.t4.1, g14978.t2,Cre14.g621558.t2.1 - - - - - - - - - Cre12.g495100 PSR1 lower-confidence candidateI 3 16 0.0225091788162 1.0 3 16 0.0187006496614 1.0 O Y - 6 Phosphorus starvation response protein, Myb-like transcriptional regulator Myb-like DNA binding domain and coiled-coil domain containing transcription factor required for phosphate deficiency-inducible gene expression; nuclear-localized [AF174480 (mRNA), AF174532 (gene); PMID: 10611385] g12123.t1,Cre12.g495100.t1.1 PF00249 - - - - - AT3G13040.1 - myb-like HTH transcriptional regulator family protein Cre03.g171900 FAP56 lower-confidence candidateI 3 15 0.0194164424842 1.0 2 16 0.101796932729 1.0 O n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g3543.t1 - - - - - - - - - Cre16.g680678 TRZ2 lower-confidence candidateI 2 5 0.0198734194798 1.0 1 6 0.193519537077 1.0 O n - 13 RNase Z-like protein RNase Z-like protein, beta-lactamase family g16779.t1,Cre01.g068350.t1.1,TRZ2 - PTHR12553 - - - - AT1G52160.1 TRZ3 tRNAse Z3 Cre12.g493300 lower-confidence candidateI 2 5 0.0198734194798 1.0 1 6 0.193519537077 1.0 O n - 17 - - g12084.t1,Cre12.g493300.t1.1 PF08016 - - - - - - - - Cre03.g210849 lower-confidence candidateI 2 5 0.0198734194798 1.0 1 6 0.193519537077 1.0 C n - 15 - - g4466.t1,Cre19.g756250.t1.1 PF00069 PTHR23257:SF359,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre14.g611750 lower-confidence candidateI 2 6 0.0259315928753 1.0 2 6 0.0227162766329 1.0 M n downregulated 18 - - g14744.t1 PF00400 PTHR22847,PTHR22847:SF145 KOG0319 - - - AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre12.g551350 lower-confidence candidateI 2 6 0.0259315928753 1.0 2 6 0.0227162766329 1.0 SP n - - - - g13517.t1,Cre12.g551350.t1.1 PF01042 PTHR11803 - - - - - - - Cre17.g735876 lower-confidence candidateI 1 7 0.232102739782 1.0 2 6 0.0227162766329 1.0 O n - 16 - - g17801.t1 - - - - - - - - - Cre01.g005813 lower-confidence candidateI 1 7 0.232102739782 1.0 2 6 0.0227162766329 1.0 O n - 11 - - g140.t1,Cre01.g005813.t1.1 - - - - - - - - - Cre04.g222800 LCID lower-confidence candidateI 2 6 0.0259315928753 1.0 1 7 0.217920002866 1.0 M n - 4 Low-CO2 inducible protein Limiting CO2-inducible gene homologous to limiting-CO2 inducible proteins LCIC, LCIB [PMID: 15235119] and to LCIE [PMID 16777959]; part of the CAH1/2 cluster of inversely repeated CO2 responsive genes; LCID and CCP2 are located in head-to-head orientation g4861.t1,Cre04.g222800.t1.1 - - - - - - - - - Cre07.g343400 lower-confidence candidateI 2 6 0.0259315928753 1.0 1 7 0.217920002866 1.0 C n - 15 - - g7987.t1 PF00027 - - - - - - - - Cre07.g317500 lower-confidence candidateI 2 6 0.0259315928753 1.0 1 7 0.217920002866 1.0 M n - 10 - - g7340.t1 - - KOG0978 - - - - - - Cre07.g352900 lower-confidence candidateI 2 7 0.0326301338622 1.0 2 7 0.0286259737558 1.0 O n - 14 - - g8207.t1 PF00400,PF02141,PF03456 PTHR22847:SF210,PTHR22847 - - - - AT1G49040.1 SCD1 stomatal cytokinesis defective / SCD1 protein (SCD1) Cre02.g087800 PTK10 lower-confidence candidateI 2 7 0.0326301338622 1.0 2 7 0.0286259737558 1.0 O n - 7 Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g1633.t1,PTK10 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre05.g235650 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan SP n - 16 - - g5418.t1 - - - - - - - - - Cre03.g187050 PHT3 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 4 - - g3875.t1,Cre03.g187050.t1.1,PHT3 PF07690 PTHR11662:SF23,PTHR11662 KOG2532 - - GO:0016021,GO:0055085 AT2G29650.1 ANTR1,PHT4;1 phosphate transporter 4;1 Cre12.g546150 PETM lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 6 Cytochrome b6f complex PetM subunit Cytochrome b6f complex chain PetM, chloroplast precursor; GI:2493687; PMID: 8631873, PMID: 8616155, PMID: 7493968 g13632.t1,Cre12.g546150.t1.1 PF08041 - - - - GO:0009512 - - - Cre12.g501351 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan SP n - - - - g12550.t1,Cre12.g501300.t1.2 - - - - - - - - - Cre11.g467573 LHCA3 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 6 Chlorophyll a/b binding protein of photosystem I, type III Chlorophyll a-b binding protein, chloroplast precursor; PMID: 14988484. Expression of this gene under iron-deficient conditions was studied by Busch et al. 2008 [PMID: 18363784] g11502.t1,Cre18.g749750.t1.1,Cre18.g749750.t1.2,LHCA3 PF00504 PTHR21649 - - K08909 GO:0009765,GO:0016020 AT1G61520.1 LHCA3 photosystem I light harvesting complex gene 3 Cre01.g053000 GPD1,GPD2 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan C n upregulated 7 Glycerol-3-phosphate dehydrogenase/dihydroxyacetone-3-phosphate reductase - g1171.t1,Cre01.g053000.t1.1,GPD1 PF07479,PF00702,PF01210 PTHR11728 KOG2711 - - GO:0005975,GO:0016614,GO:0055114,GO:0003824,GO:0008152,GO:0004367,GO:0006072,GO:0009331,GO:0005737,GO:0016616,GO:0046168,GO:0051287 AT5G40610.1 - NAD-dependent glycerol-3-phosphate dehydrogenase family protein Cre16.g677026 PDH1 pyruvate dehydrogenase subunit; see Methods 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - - Pyruvate dehydrogenase E1 beta subunit Pyruvate dehydrogenase (lipoamide); pyruvate dehydrogenase E1 beta subunit (EC 1.2.4.1), probable mitochondrial precursor by homology to At5g50850; dominant of 2 potential splicing variants (minor variant PDH1b) g16134.t1,Cre01.g063700.t1.1,Cre01.g063700.t1.2,PDH1 PF02779,PF02780 PTHR11624,PTHR11624:SF11 KOG0524 1.2.4.1 K00162 GO:0003824,GO:0008152 AT5G50850.1 MAB1 Transketolase family protein Cre16.g666050 CPLD49,SCD1 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - - Saccharopine dehydrogenase Saccharopine dehydrogenase. Plant-lineage-and-diatoms conserved expressed protein [Amino acid transport and metabolism]. Previously annotated as CPLD49 g16074.t1,Cre16.g666050.t1.1,SCD1 PF03435 PTHR12286 - - - - AT1G50450.1 - Saccharopine dehydrogenase Cre09.g397150 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M n - 15 - - g9339.t1 PF09713 - - - - - AT3G10250.1 - Plant protein 1589 of unknown function Cre12.g485418 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n upregulated 2 - - g12046.t1 - - - - - - - - - Cre05.g238332 PSAD lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 7 Photosystem I reaction center subunit II, 20 kDa Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D) gi|2499965|sp|Q39615|. Expression of this gene under iron-deficient conditions was studied by Busch et al. 2008 [PMID: 18363784] g5492.t1,Cre56.g791050.t1.1,Cre56.g791050.t1.2,PSAD PF02531 - - - K02692 GO:0009522,GO:0009538,GO:0015979 AT1G03130.1 PSAD-2 photosystem I subunit D-2 Cre17.g712850 TRX23 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan SP n - - - - g17261.t1,TRX23 PF00085 PTHR18929 KOG0913 - - GO:0045454 AT2G32920.1 ATPDI9,ATPDIL2-3,PDI9,PDIL2-3 PDI-like 2-3 Cre08.g366850 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n downregulated 15 - - g8596.t1 - - - - - - - - - Cre17.g722700 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - - - - g17484.t1,Cre17.g722700.t1.1 PF04893 PTHR12822 KOG3114 - - GO:0016020 AT5G27490.1 - Integral membrane Yip1 family protein Cre12.g486300 PSAL lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 6 Photosystem I reaction center subunit XI - g12269.t1,Cre12.g486300.t1.1 PF02605 - - - K02699 GO:0009522,GO:0009538,GO:0015979 AT4G12800.1 PSAL photosystem I subunit l Cre01.g011200 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - - - - g280.t1,Cre01.g011200.t1.1 PF04658 PTHR12228 - - K03132 GO:0005669,GO:0006367,GO:0016251 AT1G55300.1 TAF7 TBP-associated factor 7 Cre12.g531283 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - - - - g13076.t2,Cre12.g531300.t2.1, g13076.t1,Cre12.g531300.t1.3 - - - - - - - - - Cre12.g528800 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 12 - - g13021.t1 - - - - - - - - - Cre12.g500400 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 9 - - g12568.t1,Cre12.g500400.t1.1 - - KOG0977 - - - - - - Cre07.g357000 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 11 - - g8301.t1,Cre07.g357000.t1.1 - - - - - - - - - Cre10.g466500 CPL12 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan C Y downregulated 13 - - g11433.t1,Cre10.g466500.t1.1 PF00903 PTHR10374,PTHR10374:SF0 KOG2944 - K08234 - AT5G57040.1 - Lactoylglutathione lyase / glyoxalase I family protein Cre04.g229000 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - 9 - - g5012.t1 PF06090 PTHR14456,PTHR14456:SF2 - - - GO:0005524,GO:0035299 AT1G22100.1 - Inositol-pentakisphosphate 2-kinase family protein Cre09.g413750 ABT1 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M n - 1 - - g10249.t1,ABT1 PF00202 PTHR11986,PTHR11986:SF17 KOG1404 - - GO:0008483,GO:0030170 AT1G80600.1 WIN1 HOPW1-1-interacting 1 Cre02.g074100 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 4 - - g1314.t1,Cre02.g074100.t1.1 - - - - - - AT5G42070.1 - - Cre09.g390060 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - - - - g9658.t1 - - - - - - - - - Cre14.g617600 DEG9 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan C n - - DegP-type protease Serine protease, trypsin family, DegP type (HtrA) (protease Do) most similar to Arabidopsis DegP2, 3, 9, 10, 11, 12, 13 and 16; localization unsure [PMID: 11299370, PMID: 12185496]; has one PDZ domain, probably involved in substrate recognition and protea g14880.t1,Cre14.g617600.t1.1 PF00089 PTHR22939,PTHR22939:SF1 KOG1320 - - GO:0004252,GO:0006508 AT5G36950.1 DegP10 DegP protease 10 Cre15.g635100 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan SP n - 3 - - g15317.t1,Cre15.g635100.t1.1 PF06203 - - - - GO:0005515 AT4G25990.1 CIL CCT motif family protein Cre12.g550850 PSBP1 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 6 Oxygen-evolving enhancer protein 2 of photosystem II Oxygen-evolving enhancer protein 2, chloroplast precursor (OEE2) (23 kDa subunit of oxygen evolving complex of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23);PMID: 3468511; targeted to thylakoid lumen by TAT pathway g13528.t1,Cre12.g550850.t1.1 PF01789 - - - K02717 GO:0005509,GO:0009523,GO:0009654,GO:0015979,GO:0019898 AT1G06680.1 OE23,OEE2,PSBP-1,PSII-P photosystem II subunit P-1 Cre10.g420350 PSAE lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 7 Photosystem I 8.1 kDa reaction center subunit IV Photosystem I reaction center subunit IV, chloroplast precursor (PSI-E) (Photosystem I 8.1 kDa protein) [PMID: 2693938] g10401.t1,Cre10.g420350.t1.1 PF02427 - - - K02693 GO:0009522,GO:0009538,GO:0015979 AT2G20260.1 PSAE-2 photosystem I subunit E-2 Cre02.g095035 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - - - - g1802.t1 - - - - - - - - - Cre17.g715653 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M n - 12 - - g17324.t1,Cre17.g715653.t1.1 - - - - - - - - - Cre17.g735283 CYN15 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan - n - 12 - - g17788.t2,Cre17.g735300.t1.3,CYN15, g17788.t1,Cre17.g735300.t2.1,CYN15 - - - - - - - - - Cre12.g524250 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 15 - - g12908.t1,Cre12.g524250.t1.1 - - - - - - - - - Cre12.g510650 FBP1,FBP2 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 6 Fructose-1,6-bisphosphatase Fructose-1,6-bisphosphatase (EC 3.1.3.11), plastid precursor g12336.t1,Cre12.g510650.t1.1,FBP1 PF00316 PTHR11556,PTHR11556:SF7 KOG1458 3.1.3.11 K03841 GO:0005975,GO:0042578 AT3G54050.1 HCEF1 high cyclic electron flow 1 Cre16.g683300 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 8 - - g16436.t1,Cre16.g683300.t1.1 - - - - - - AT2G25605.1 - - Cre06.g267650 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - - - - g6006.t1,Cre06.g267650.t1.1 PF00069 PTHR24347,PTHR24347:SF113 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT2G17890.1 CPK16 calcium-dependent protein kinase 16 Cre03.g148350 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan C n - - - - g3017.t1,Cre03.g148350.t1.1 - - - - - - AT5G41960.1 - - Cre05.g245900 BCA2 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan C n - 2 Branched-chain amino acid aminotransferase Branched-chain amino acid aminotransferase (BCAT1) (EC:2.6.1.42); similar to rice BCAT (GenBank NP_912527); predicted mitochondrial by Target-P; localization by homology is ambiguous g5217.t1,Cre05.g245900.t1.1,BCA2 PF01063 PTHR11825:SF2,PTHR11825 KOG0975 2.6.1.42 K00826 GO:0004084,GO:0009081,GO:0003824,GO:0008152 AT5G65780.1 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) Cre02.g085300 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 8 - - g1577.t1,Cre02.g085300.t1.1 - - - - - - - - - Cre14.g627788 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M n - 15 - - g15123.t1 PF01753 PTHR13244 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre06.g256850 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - - - - g5772.t2, g5772.t1 - - - - - - AT4G27910.1 ATX4,SDG16 SET domain protein 16 Cre06.g294950 ENR1 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 17 - - g6828.t1 - - KOG0725 1.3.1.9 K00208 - AT2G05990.1 ENR1,MOD1 NAD(P)-binding Rossmann-fold superfamily protein Cre13.g584250 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan C n - 3 - - g14343.t1,Cre13.g584250.t1.1 - - - - - - - - - Cre11.g467689 PETC lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 6 Rieske iron-sulfur subunit of the cytochrome b6f complex, chloroplast precursor Rieske iron-sulfur protein; cytochrome b6f complex iron-sulfur subunit, chloroplast precursor gi:1717956, PMID: 8125984 g11619.t1,Cre18.g744400.t1.1,Cre18.g744400.t1.2,PETC PF08802,PF00355 PTHR10134 - 1.10.99.1 K02636 GO:0016679,GO:0055114,GO:0009496,GO:0042651,GO:0051537,GO:0016491 AT4G03280.1 PETC,PGR1 photosynthetic electron transfer C Cre12.g519100 ACX2 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 4 - - g12797.t1,Cre12.g519100.t1.1,ACX2 PF03255 PTHR22855:SF3,PTHR22855 - 6.4.1.2 K01962 GO:0003989,GO:0006633,GO:0009317 AT2G38040.1 CAC3 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit Cre09.g399030 HPD2 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - 17 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4HPPD) (HPD) (HPPDase) g9908.t1,Cre02.g136100.t1.1,Cre02.g136100.t1.2,HPD2 PF00903 PTHR11959 KOG0638 1.13.11.27 K00457 GO:0003868,GO:0009072 AT1G06570.1 HPD,PDS1 phytoene desaturation 1 Cre23.g754747 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - - - - g18240.t1 - - - - - - - - - Cre10.g422000 TRM1,TMG6 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 1 tRNA (guanine-N2)-methyltransferase tRNA (guanine-N2)-methyltransferase. Previously annotated as TRM1 g10441.t1,Cre10.g422000.t1.1,TMG6,TRM1 PF02005 PTHR10631 KOG1253 2.1.1.32 K00555 GO:0003723,GO:0004809,GO:0008033 AT3G02320.1 - N2,N2-dimethylguanosine tRNA methyltransferase Cre09.g399914 SSA8 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan M n - 16 - - g9278.t1,Cre09.g399800.t1.3,SSA8 - PTHR12463 - - - - AT1G31600.2 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre13.g570900 MSRA1 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 15 Peptide methionine-S-sulfoxide reductase, selenoprotein Peptide methionine-S-sulfoxide reductase. Selenocysteine containing protein; the UGA codon in the first exon is translated by a special selenocysteine carrying tRNA that can read UGA [PMID: 12110581]. Selenocysteine tRNA, see PMID: 12869703. g14041.t1,MSRA1 PF01625 PTHR10173:SF6,PTHR10173 - - - GO:0016671,GO:0019538,GO:0055114 AT4G25130.1 PMSR4 peptide met sulfoxide reductase 4 Cre02.g117750 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - - - - g2442.t1,Cre02.g117750.t1.1 - - - - - - - - - Cre07.g341555 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan C n - - - - g7962.t1 PF03372,PF00078 PTHR13078,PTHR13078:SF14 - - - GO:0003723,GO:0003964,GO:0006278 AT2G22720.2 - SPT2 chromatin protein Cre12.g503700 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M n - - - - g12495.t1,Cre12.g503700.t1.1 - - - - - - - - - Cre12.g503000 GLPT1,GPT3 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - 8 Glycerol-3-phosphate transporter, major facilitator superfamily Glycerol-3-phosphate transporter, major facilitator superfamily. Previously annotated as GLPT1, combined with HPT series g12510.t1,Cre12.g503000.t1.1,GLPT1,GPT3 PF07690 PTHR11662:SF82,PTHR11662 KOG2533 - K13783 GO:0016021,GO:0055085 AT3G47420.1 ATPS3,PS3 phosphate starvation-induced gene 3 Cre16.g688633 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 17 - - g16166.t2,Cre16.g688633.t1.1, g16166.t1 - - - - - - - - - Cre02.g099850 PDC2 pyruvate dehydrogenase subunit; see Methods 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 4 Pyruvate dehydrogenase, E1 component, alpha subunit Pyruvate dehydrogenase (EC 1.2.4.1), E1 component alpha subunit (ODPA, PDC2_E1a). The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate g2032.t1,PDC2 PF00676 PTHR11516,PTHR11516:SF5 KOG0225 1.2.4.1 K00161 GO:0008152,GO:0016624 AT1G01090.1 PDH-E1 ALPHA pyruvate dehydrogenase E1 alpha Cre16.g678851 PSBP2 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 14 - - g16537.t1,Cre16.g678800.t1.3 PF01789 - - - - GO:0005509,GO:0009523,GO:0009654,GO:0015979,GO:0019898 AT2G28605.1 - Photosystem II reaction center PsbP family protein Cre05.g242178 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - 9 - - g5310.t1,Cre05.g242178.t1.1 PF03009 PTHR23344 - - - GO:0006071,GO:0008889 - - - Cre02.g106600 RPS19 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 12 Ribosomal protein S19, component of cytosolic 80S ribosome and 40S small subunit Cytosolic 80S ribosomal protein S19; Cytosolic 40S small ribosomal subunit protein S19 g2185.t1,Cre02.g106600.t1.1 PF01090 PTHR11710 KOG3411 - K02966 GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT3G02080.1 - Ribosomal protein S19e family protein Cre16.g679200 PEX1 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan C n downregulated 16 - - g16526.t1,PEX1 PF09262,PF00004 PTHR23077:SF12,PTHR23077 KOG0733 - - GO:0005524,GO:0005777,GO:0007031 AT5G08470.1 PEX1 peroxisome 1 Cre05.g232304 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - - - - g5133.t1 - - - - - - - - - Cre13.g565550 RPB11 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - - DNA-directed RNA polymerase II, 13.6 kDa polypeptide 13.6 kDa polypeptide subunit for putative DNA-directed RNA polymerase II,, homologous to DNA-directed RNA polymerase II from other species such as rice, Arabidopsis, Drosophila and human g13919.t1,Cre13.g565550.t1.1,RPB11 PF01193 PTHR13946,PTHR13946:SF16 KOG4392 - K03008 GO:0003899,GO:0006351,GO:0046983 AT3G52090.1 ATRPB13.6,NRPB11,NRPD11,NRPE11 DNA-directed RNA polymerase, RBP11-like Cre09.g416200 MBB1 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M Y - 4 PsbB mRNA maturation factor, chloroplastic; involved in splicing PsbB mRNA maturation and stabilization factor Mbb1, chloroplast precursor [PMID: 11121080]; involved in pre-mRNA splicing g10301.t1,Cre09.g416200.t1.1 - PTHR11246,PTHR11246:SF9 - - - - AT3G17040.1 HCF107 high chlorophyll fluorescent 107 Cre02.g082100 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - 9 - - g1504.t1 - - - - - - - - - Cre01.g022400 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan SP n - 5 - - g516.t1 PF00226 - - - - GO:0031072 AT3G58020.1 - Chaperone DnaJ-domain superfamily protein Cre03.g158900 DLA2 pyruvate dehydrogenase subunit; see Methods 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 4 Dihydrolipoamide acetyltransferase Dihydrolipoamide acetyltransferase (EC 2.3.1.12), E2 component of pyruvate dehydrogenase complex, probably plastidic, based on Target-P prediction and similarity to Arabidopsis LTA2 (GenBank NP_189215) g3253.t1,Cre03.g158900.t1.1 PF00364,PF00198,PF02817 PTHR23151:SF31,PTHR23151 KOG0557 2.3.1.12 K00627 GO:0008152,GO:0008415 AT1G34430.1 EMB3003 2-oxoacid dehydrogenases acyltransferase family protein Cre06.g295700 MCM3 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 10 Minichromosome maintenance protein Homologous to MCM3 DNA replication protein g6844.t1 PF00493 PTHR11630,PTHR11630:SF46 KOG0479 - K02541 GO:0003677,GO:0005524,GO:0006260 AT5G46280.1 MCM3 Minichromosome maintenance (MCM2/3/5) family protein Cre03.g182551 PCY1,PC6-2 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 7 Pre-apoplastocyanin Pre-apoplastocyanin copper binding protein, PETE [PMID: 2165059; PMID: 8940133]; structure of plastocyanin PDB: 2PLT; mutant = ac208 [PMID: 8463310] g3784.t1,Cre03.g182551.t1.1,PC6-2 PF00127 - - - K02638 GO:0005507,GO:0009055 AT1G76100.1 PETE1 plastocyanin 1 Cre12.g521450 CLPP2 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 8 Catalytic subunit of mitochondrial ClpXP protease Clp protease, ClpP complex, catalytic subunit, mitochondrial (Predotar 0.100; TargetP: 0.733, len 30 but identity with other ClpP2 starts at pos. 34) g12846.t1 PF00574 PTHR10381 - 3.4.21.92 K01358 GO:0004252,GO:0006508 AT5G23140.1 CLPP2,NCLPP7 nuclear-encoded CLP protease P7 Cre16.g665750 RAA2,MAA2 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M n - 3 tRNA-pseudouridine synthase, requiring for psaA trans-splicing RNA Pseudouridine synthase. Required for trans-splicing of chloroplast psaA mRNA 2nd intron. Similar regions to pseudouridine synthase. Published as MAA2 [PMID: 10562560] g16068.t1,Cre16.g665750.t1.1,MAA2 PF01509 PTHR23127 - - - GO:0006396 AT5G14460.1 - Pseudouridine synthase family protein Cre17.g720550 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 10 - - g17440.t1,Cre17.g720550.t1.1 PF09348 - - - - - AT2G17695.1 - - Cre02.g073700 UROD3,UPD3 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 6 Uroporphyrinogen decarboxylase Uroporphyrinogen decarboxylase (URO-D);Uroporphyrinogen decarboxylase (URO-D) (UPD) (Hem3). Previously annotated as UROD3 g1305.t2,Cre02.g073700.t1.1,UPD3, g1305.t1,UPD3 PF01208 PTHR21091,PTHR21091:SF2 KOG2872 - - GO:0004853,GO:0006779 AT2G40490.1 HEME2 Uroporphyrinogen decarboxylase Cre02.g074950 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 11 - - g1339.t1 - - - - - - - - - Cre14.g615200 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - 12 - - g14821.t1 - - - - - - - - - Cre09.g400300 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - - - - g9263.t1 - - - - - - - - - Cre09.g415700 CAH3 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n upregulated 4 Carbonic anhydrase 3 Carbonic anhydrase, carbonate dehydratase (EC 4.2.1.1) precursor, alpha type; located in thylakoid lumen (TAT pathway); identical to CRU73856; PSII associated, involved in photosynthesis and CO2 concentration; [PMID: 9482718]. Originally described as CA, g10291.t1,Cre09.g415700.t1.1,CAH3 PF00194 PTHR18952,PTHR18952:SF2 KOG0382 4.2.1.1 K01672 - AT1G08080.1 ACA7,ATACA7 alpha carbonic anhydrase 7 Cre02.g146950 DBR1 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 9 RNA lariat debranching enzyme RNA lariat debranching enzyme. This is the first step in the degradation of lariat introns produced during splicing. The enzyme is also involved in discarding unproductive lariat intron-exon2 intermediates if the second splicing step is blocked, and in th g2521.t1,DBR1 PF00149,PF05011 PTHR12849 KOG2863 - - GO:0016787,GO:0006397,GO:0016788 AT4G31770.1 ATDBR1,DBR1 debranching enzyme 1 Cre14.g632775 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - 8 - - g15249.t1,Cre75.g795450.t1.1 PF01399 PTHR10855,PTHR10855:SF1 KOG1498 - K03035 GO:0005515 AT5G09900.2 EMB2107,MSA,RPN5A 26S proteasome regulatory subunit, putative (RPN5) Cre11.g468362 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 18 - - g11754.t1,Cre45.g788400.t1.1,Cre45.g788400.t1.2 - - - - - - - - - Cre06.g278185 UGD2 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 8 UDP-glucose dehydrogenase UDP-glucose dehydrogenase, belongs to the UDP-glucose/GDP-mannose dehydrogenase family. Found in the flagellar proteome [PMID: 15998802]; (UGPD1, UDP2) g6328.t1,Cre13.g597550.t1.1,Cre13.g597550.t1.2,UGD2 PF00984,PF03720,PF03721 PTHR11374 KOG2666 1.1.1.22 K00012 GO:0016616,GO:0051287,GO:0055114 AT1G26570.1 ATUGD1,UGD1 UDP-glucose dehydrogenase 1 Cre13.g583100 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M n - 10 - - g14315.t1 PF04413 PTHR23417:SF2,PTHR23417 - - - GO:0005529,GO:0005975,GO:0016740 AT5G03770.1 KDTA KDO transferase A Cre12.g487100 TSM2 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan C n - 4 - - g12247.t1,Cre12.g487100.t1.1,TSM2 PF09334,PF08264 PTHR11946:SF1,PTHR11946 KOG0436 6.1.1.10 K01874 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418 AT3G55400.1 OVA1 methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) Cre05.g243800 PSB27,CPLD45 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 6 Predicted protein Conserved expressed protein with possible function in PSII and possible lumen location g5260.t1,Cre05.g243800.t1.1,CPLD45 - - - - K08902 - AT1G03600.1 PSB27 photosystem II family protein Cre05.g248600 PCC1 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 4 - - g5160.t1,Cre05.g248600.t1.1 PF00403 - - - - GO:0030001,GO:0046872 AT5G21930.1 ATHMA8,HMA8,PAA2 P-type ATPase of Arabidopsis 2 Cre12.g509001 RPK2 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 14 - - g12373.t1,RPK2 PF00069 PTHR24055 - - - GO:0004672,GO:0005524,GO:0006468 AT2G18170.1 ATMPK7,MPK7 MAP kinase 7 Cre10.g433400 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - 11 - - g10691.t1,Cre10.g433400.t1.1 PF03650 PTHR14154,PTHR14154:SF2 KOG1589 - - - AT4G05590.1 - - Cre04.g227750 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M n - 11 - - g4984.t1 PF08573 - - - - - AT3G52115.1 ATCOM1,ATGR1,COM1,GR1 gamma response gene 1 Cre07.g338000 MCM2 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 10 Minichromosome maintenance protein Homologous to MCM2 DNA replication protein g7864.t1,Cre07.g338000.t1.1 PF12619,PF00493 PTHR11630:SF44,PTHR11630 KOG0477 - K02540 GO:0003677,GO:0005524,GO:0005634,GO:0006270,GO:0006260 AT1G44900.1 ATMCM2,MCM2 minichromosome maintenance (MCM2/3/5) family protein Cre12.g504000 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 2 - - g12489.t1 PF03372 PTHR12121 KOG0620 - - - AT1G31500.2 - DNAse I-like superfamily protein Cre10.g456650 AOF6 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n upregulated 4 - - g11206.t1,AOF6 PF01593 PTHR10742 KOG0029 1.4.3.4 K00274 - AT1G62830.1 ATLSD1,ATSWP1,LDL1,LSD1,SWP1 LSD1-like 1 Cre05.g242000 CHLD lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 4 Magnesium chelatase subunit D Magnesium-chelatase subunit chlD, chloroplast precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D); orthologous to the bacterial magnesium chelatase subunits BchD, and other plant magnesium chelatase subunits ChlD; [PMID: 9359397]. Forms an g5315.t1,Cre05.g242000.t1.1 PF00092,PF01078 - - 6.6.1.1 K03404 GO:0005515,GO:0015979,GO:0015995,GO:0016851 AT1G08520.1 ALB-1V,ALB1,CHLD,PDE166,V157 ALBINA 1 Cre11.g467749 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 13 - - g11679.t1,Cre22.g764250.t1.1 - - - - - - - - - Cre14.g610550 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - - - - g14715.t1 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 AT5G19330.1 ARIA ARM repeat protein interacting with ABF2 Cre01.g052400 CPLD43 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 3 CPLD43 protein, required for cyt b6 assembly CPLD43, involved in covalent heme binding to cyt b6; Conserved in plant lineage and diatoms (organisms performing oxygenic photosynthesis). Localized to chloroplast. Member of the YGGT protein family. PMID: 17535914. Previously annotated as CCB3 g1161.t1,Cre01.g052400.t1.1 PF02325 - - - - GO:0016020 AT5G36120.1 atylmg3,CCB3,YLMG3 cofactor assembly, complex C (B6F) Cre06.g260250 YCF10,CEM1,CEMA lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M Y upregulated 5 Chloroplast proton extrusion protein Chloroplast envelope membrane protein of the CemA superfamily, containing weak similarity to proton extrusion protein pcxA (Swiss-Prot:P75028) which seems involved in both light-induced Na+-dependent proton extrusion and CO(2) transport; possibly heme bin g5849.t1,Cre06.g260250.t1.1,CEMA,YCF10 PF03040 - - - - GO:0016021 AT4G31040.1 - CemA-like proton extrusion protein-related Cre08.g358538 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan C n upregulated 4 Putative chloroplast lycopene beta cyclase - g8354.t1,Cre41.g786900.t1.1,Cre41.g786900.t1.2 PF05834 PTHR10617,PTHR10617:SF31 - 1.14.-.- K06443 GO:0016117,GO:0016705 AT3G10230.1 LYC lycopene cyclase Cre07.g320300 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan SP n - 11 - - g7407.t1,Cre07.g320300.t1.1 - - - - - - - - - Cre13.g569700 OPR56 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n upregulated 4 - - g14017.t1 - - - - - - - - - Cre02.g074900 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan M n downregulated - - - g1338.t1 PF00168 PTHR10774:SF2,PTHR10774 - - - GO:0005515 AT3G19830.1 NTMC2T5.2,NTMC2TYPE5.2 Calcium-dependent lipid-binding (CaLB domain) family protein Cre17.g699900 AKR10 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 4 - - g16973.t1,Cre17.g699900.t1.1,AKR10 PF00248 PTHR11732:SF15,PTHR11732 KOG1575 - - GO:0016491,GO:0055114 AT1G04420.1 - NAD(P)-linked oxidoreductase superfamily protein Cre12.g537850 CCB2 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y upregulated 3 Protein required for cyt b6 assembly Protein involved in covalent heme binding to cytochrome b6. Conserved among organisms performing oxygenic photosynthesis. The protein is localized to the chloroplast and homologous to CCB4. PMID: 17535914 g13226.t1,Cre12.g537850.t1.1 PF11152 - - - - - AT5G52110.1 CCB2,HCF208 Protein of unknown function (DUF2930) Cre03.g206350 OPR19 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M n - 4 - - g4184.t1 - - - - - - - - - Cre06.g273850 HTB7 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan O n - - Histone H2B Replication-linked Histone H2B g6143.t1,Cre06.g273850.t1.1,HTB7 PF00125 PTHR23428 KOG1744 - K11252 GO:0003677,GO:0000786,GO:0005634,GO:0006334 AT3G45980.1 H2B,HTB9 Histone superfamily protein Cre01.g042800 DVR1 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 6 3,8-divinyl protochlorophyllide a 8-vinyl reductase 3,8-divinyl protochlorophyllide a 8-vinyl reductase, chloroplast precursor [PMID: 15849308]; predicted chloroplast transit peptide 1-58; [PMID: 15695432; PMID: 15849308] g958.t1,Cre01.g042800.t1.1 PF05368 PTHR14194,PTHR14194:SF15 KOG1203 - - - AT5G18660.1 PCB2 NAD(P)-binding Rossmann-fold superfamily protein Cre05.g236550 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 11 - - g5441.t1,Cre05.g236550.t1.1 - - - - - - - - - Cre06.g258566 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 11 - - g5813.t1,Cre06.g258574.t1.2 - - - - - - - - - Cre06.g307551 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M n - - - - g7122.t1,Cre06.g307550.t1.3 - - - - - - - - - Cre03.g179800 LCI24 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n upregulated - Low-CO2-inducible membrane protein Low-CO2 inducible gene revealed by cDNA array analyses; SOSUI prediction: 3 transmembrane region. TargetP prediction: Mitochondria (confidence: 4); regulated by CCM1 [PMID: 15235119]. Acclimation to changing CO2 concentrations and light intensities was st g3721.t1,Cre03.g179800.t1.1 PF07466 - - - - - - - - Cre07.g312050 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - - - - g7219.t1 PF01266 PTHR10961 - - - GO:0016491 - - - Cre08.g358600 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n downregulated 17 - - g8401.t1 - - - - - - - - - Cre17.g702150 TRX20,HCF164,CCS5 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 4 - - g17023.t1,Cre17.g702150.t1.1,HCF164,TRX20 PF00085 PTHR10438:SF102,PTHR10438 KOG0907 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT4G37200.1 HCF164 Thioredoxin superfamily protein Cre09.g416750 CCT2 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 8 T-complex protein 1, beta subunit T-complex protein 1, beta subunit (TCP-1-beta) (CCT-beta) (TCPB); subunit of cytosolic chaperonin complex g10314.t1,Cre09.g416750.t1.1,CCT2 PF00118 PTHR11353,PTHR11353:SF23 KOG0363 - K09494 GO:0005524,GO:0044267,GO:0006457,GO:0051082 AT5G20890.1 - TCP-1/cpn60 chaperonin family protein Cre12.g485850 CPLD64 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 3 - - g12280.t1,Cre12.g485850.t1.1 PF06916 PTHR21377 KOG4526 - - - AT2G27290.1 - Protein of unknown function (DUF1279) Cre01.g016350 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 17 - - g388.t1 - - - - - - - - - Cre16.g689500 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M n - 17 - - g16185.t1 - - - - - - - - - Cre05.g246551 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan C n - 18 - - g5203.t1 - - - - - - - - - Cre07.g344771 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan SP n - 17 - - g8022.t1,Cre07.g344771.t1.1 PF01753 PTHR23151:SF8,PTHR23151 - - - GO:0008270 - - - Cre12.g517681 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan C n - 17 - - g12765.t1,Cre12.g517681.t1.1 - - - - - - - - - Cre06.g280650 CGL59 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C Y - 4 Predicted protein Conserved expressed protein similar to unknown protein At5g44650; probably chloroplastic g6528.t1,Cre06.g280650.t1.1 - - - - - - AT5G44650.1 AtCEST,CEST - Cre03.g203800 lower-confidence candidateI 0 1 1.0 nan 1 0 0.0302596485717 nan C n - - - - g4240.t1,Cre03.g203800.t1.1 - - - - - - AT1G28150.1 - - Cre03.g175250 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - 7 - - g3618.t1,Cre03.g175250.t1.1, g3618.t2 PF00494 PTHR11626 KOG1459 2.5.1.21 K00801 GO:0009058,GO:0016740 AT4G34640.1 ERG9,SQS1 squalene synthase 1 Cre07.g349450 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - - - - g8130.t1 - - KOG3304 - - - - - - Cre04.g212350 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan C n - 4 - - g4732.t1,Cre04.g212350.t1.1 PF10013 - - - - - - - - Cre08.g361650 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan SP n - 9 - - g8467.t1 - - - - - - - - - Cre04.g226450 PRP17 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan O n - - Nuclear pre-mRNA splicing factor, component of the spliceosome Homologue of yeast PRP17, which is required specifically for the second step of splicing; contains WD-40 repeats. g4956.t1,PRP17 PF00400 PTHR19852,PTHR19852:SF6 KOG0282 - K12816 - AT1G10580.1 - Transducin/WD40 repeat-like superfamily protein Cre01.g050500 PPR1 lower-confidence candidateI 1 0 0.032475682459 nan 1 0 0.0302596485717 nan M n upregulated 3 Pentatrichopeptide repeat protein Pentatrichopeptide repeat protein (contains 3 PPR repeats) g1116.t1 PF01535 PTHR24015,PTHR24015:SF207 - - - - AT3G04760.1 - Pentatricopeptide repeat (PPR-like) superfamily protein Cre09.g390578 FAP11 lower-confidence candidateI 4 33 0.0313879652067 1.0 2 35 0.308781999073 1.0 O n downregulated 12 - - g9672.t1,Cre02.g126000.t1.1,Cre02.g126000.t1.2 - - - - - - - - - Cre17.g700900 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - 9 - - g16995.t1 - - - - - - - - - Cre12.g541211 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - - - - g13751.t3, g13751.t2, g13751.t1 - PTHR24362,PTHR24362:SF96 - - - - - - - Cre12.g508642 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan - n - - - - g12381.t1,Cre12.g508642.t1.1 - - - - - - - - - Cre12.g508643 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan C n - - - - g12382.t1,Cre12.g508642.t1.2 - - - - - - - - - Cre06.g279976 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan SP n - 16 - - g6509.t1 - - - - - - - - - Cre17.g705750 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan C n - - - - g17104.t1,Cre17.g705750.t1.1 - - - - - - - - - Cre10.g465750 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - 15 - - g11413.t1 - - - - - - - - - Cre02.g141966 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n downregulated 18 - - g2740.t3,Cre15.g646650.t2.1, g2740.t4,Cre15.g646650.t3.1, g2740.t1,Cre15.g646650.t4.1, g2740.t2,Cre15.g646650.t1.1 PF00069 PTHR26392,PTHR26392:SF151 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre04.g217909 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan C n - 3 - - g4540.t1,Cre03.g211200.t1.1 - - - - - - - - - Cre10.g461100 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - - - - g11305.t1 - - - - - - - - - Cre06.g303600 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - 13 - - g7031.t1 - - - - - - - - - Cre24.g756047 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - 13 - - g18269.t1 - - - - - - - - - Cre17.g699450 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - - - - g16963.t1,Cre17.g699450.t1.1 - - - - - - - - - Cre07.g348100 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - - - - g8100.t1,Cre07.g348100.t1.1 - - - - - - AT2G21195.1 - - Cre17.g745147 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n downregulated 8 - - g18019.t1,Cre20.g759650.t1.1 - - - - - - - - - Cre07.g345050 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - - - - g8030.t1,Cre07.g345050.t1.1 PF03110 - - - - GO:0003677,GO:0005634 AT1G27370.1 SPL10 squamosa promoter binding protein-like 10 Cre12.g510050 CTH1,CTH1A,CTH1B lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan C Y - 6 Copper target 1 protein Copper target homolog 1 protein, chloroplast precursor, functional variant produced under copper and/or oxygen sufficient conditions [GI:15650866; PMID: 11910013; PMID: 14673103]; also named CHL27B; Mg-protoporphyrin IX monomethyl ester (oxidative) cyclas g12349.t1,Cre12.g510050.t1.1,CTH1A,CTH1B PF02915 - - 1.14.13.81 K04035 GO:0046872 AT3G56940.1 ACSF,CHL27,CRD1 dicarboxylate diiron protein, putative (Crd1) Cre16.g687900 LHCA7 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan C n - 6 Light-harvesting protein of photosystem I - g16329.t1,Cre16.g687900.t1.1 PF00504 PTHR21649 - - K08911 GO:0009765,GO:0016020 AT1G45474.1 LHCA5 photosystem I light harvesting complex gene 5 Cre06.g311350 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan SP n - 15 - - g7203.t1 - - - - - - - - - Cre09.g397400 SDR17 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - 9 - - g9334.t1,Cre09.g397400.t1.1,SDR17 PF00106 PTHR24316:SF98,PTHR24316 KOG1208 - - GO:0008152,GO:0016491 AT4G23430.2 - NAD(P)-binding Rossmann-fold superfamily protein Cre02.g141446 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan M n - - - - g2714.t1 PF01541 - - - - GO:0004518,GO:0005622,GO:0006281 - - - Cre17.g721250 FAP22 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n downregulated 12 Flagellar Associated Protein, qilin-like Conserved uncharacterized protein; found in the flagellar proteome [PMID: 15998802]; similar to D. rerio cystic kidney disease gene qilin g17451.t1,Cre17.g721250.t1.1 PF10234 PTHR21547 KOG3647 - - - - - - Cre05.g234100 CYP745A1,CYP17 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan SP n upregulated 7 Cytochrome P450, CYP197 superfamily Cytochrome P450, CYP197 superfamily. Previously annotated as CYP745A1 g5091.t1,Cre05.g234100.t1.1,CYP17 PF00067 PTHR24290,PTHR24290:SF151 KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT1G31800.1 CYP97A3,LUT5 cytochrome P450, family 97, subfamily A, polypeptide 3 Cre05.g238353 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan M n - - - - g5494.t1 - - - - - - - - - Cre02.g105400 CDC14 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - - Cell Division Cycle protein Cell Division Cycle 14 (Protein Tyrosine Phosphatase)(PTP) g2161.t1 PF00782 PTHR23339,PTHR23339:SF27 KOG1720 3.1.3.48 K06639 GO:0006470,GO:0008138 AT3G50110.1 ATPEN3,PEN3 PTEN 3 Cre03.g191950 CGLD31 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan C Y - 1 - - g3973.t1,Cre03.g191950.t1.1 PF01782,PF05239 - - - - GO:0006364 AT5G46420.1 - 16S rRNA processing protein RimM family Cre02.g090200 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - 14 - - g1685.t1 - - - - - - - - - Cre06.g278104 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan C n - 6 - - g6247.t1,Cre13.g593750.t1.1,Cre13.g593750.t1.2 - - - - - - - - - Cre09.g417350 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - 11 - - g10331.t1 PF05711 - - - - - - - - Cre05.g237350 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - - - - g5460.t2,Cre05.g237350.t1.1, g5460.t1 - - - - - - AT5G13020.1 - Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein Cre02.g074200 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan M n downregulated 17 - - g1316.t1,Cre02.g074200.t1.1 - - - - - - - - - Cre03.g200319 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - 14 - - g4369.t1,Cre19.g752050.t1.1 - - - - - - - - - Cre12.g518300 SPL25 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - - - - g12781.t1,Cre12.g518300.t1.1,SPL25 PF08315 - KOG3407 - K12871 - AT3G05070.1 - - Cre10.g442650 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan C n - 12 - - g10889.t1,Cre10.g442650.t1.1 PF01424 PTHR10887:SF140,PTHR10887 KOG1803 - - GO:0003676 AT2G03270.1 - DNA-binding protein, putative Cre11.g468377 lower-confidence candidateI 1 0 0.032475682459 nan 0 1 1.0 nan O n - - - - g11759.t1 PF00400 PTHR22841,PTHR22841:SF16 KOG0315 - K12602 - AT4G29830.1 VIP3 Transducin/WD40 repeat-like superfamily protein Cre02.g106950 lower-confidence candidateI 2 7 0.0326301338622 1.0 1 8 0.241581756498 1.0 M n - 16 - - g2192.t1 - - - - - - - - - Cre05.g245701 FAP104 lower-confidence candidateI 2 7 0.0326301338622 1.0 1 8 0.241581756498 1.0 O n - 15 - - g5221.t1,Cre05.g245600.t2.1, g5221.t3,Cre05.g245600.t3.1, g5221.t2,Cre05.g245600.t1.2 - - KOG3647 - - - AT2G25320.1 - TRAF-like family protein Cre04.g228900 PPP19 lower-confidence candidateI 2 7 0.0326301338622 1.0 1 8 0.241581756498 1.0 O n - 9 - - g5009.t1,PPP19 PF03031,PF00240 PTHR13730 - 3.1.3.16 K01090 GO:0005515 AT4G06599.1 - ubiquitin family protein Cre14.g629840 lower-confidence candidateI 2 7 0.0326301338622 1.0 1 8 0.241581756498 1.0 SP n - - - - g15168.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre14.g634236 lower-confidence candidateI 2 8 0.0399210079944 1.0 2 8 0.0350729792749 1.0 C n - 8 - - g15292.t1,Cre14.g634250.t1.3, g15292.t2,Cre14.g634250.t2.1, g15292.t3,Cre14.g634250.t3.1 - - - - - - - - - Cre03.g165450 lower-confidence candidateI 2 8 0.0399210079944 1.0 2 8 0.0350729792749 1.0 O n - 7 - - g3394.t1 PF00023 PTHR24188 KOG4214 - - GO:0005515 AT4G22200.1 AKT2,AKT2/3,AKT3,KT2/3 potassium transport 2/3 Cre01.g010864 lower-confidence candidateI 1 9 0.281160794158 1.0 2 8 0.0350729792749 1.0 SP n - 4 - - g272.t1 PF03462,PF00472 PTHR11075,PTHR11075:SF38 KOG2726 - - GO:0005737,GO:0006415,GO:0016149,GO:0003747 AT5G36170.1 ATPRFB,HCF109 high chlorophyll fluorescent 109 Cre02.g111150 ELG26 lower-confidence candidateI 2 8 0.0399210079944 1.0 2 8 0.0350729792749 1.0 SP n - 9 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g2284.t1,ELG26 PF03016,PF07974 PTHR11062,PTHR11062:SF20 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre02.g095250 lower-confidence candidateI 3 20 0.0373833444451 1.0 2 21 0.152759363355 1.0 M n - 10 - - g1933.t1 PF00092,PF07728 PTHR14187:SF34,PTHR14187 - - - GO:0005515,GO:0005524,GO:0016887 AT1G67120.1 - ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding Cre07.g325711 lower-confidence candidateI 3 22 0.0462934509854 1.0 3 22 0.0388294833621 1.0 O n - 18 - - g7525.t1,Cre26.g771900.t1.1,Cre26.g771900.t1.2 PF10601 PTHR23292 - - - - - - - Cre06.g304850 lower-confidence candidateI 2 8 0.0399210079944 1.0 1 9 0.264527176185 1.0 O n - 8 - - g7056.t1 PF04424 PTHR18063,PTHR18063:SF6 KOG2427 - - - AT4G11860.1 - Protein of unknown function (DUF544) Cre02.g146300 lower-confidence candidateI 2 9 0.0477586285942 1.0 2 9 0.0420193202055 1.0 O n - 16 - - g2534.t1, g2534.t2 PF03493,PF07885 PTHR10027 - - K04936 GO:0006813,GO:0015269,GO:0016020 - - - Cre04.g218500 lower-confidence candidateI 2 9 0.0477586285942 1.0 2 9 0.0420193202055 1.0 SP n - 8 - - g4762.t1,Cre04.g218500.t1.1 PF00248 PTHR11732:SF95,PTHR11732 KOG1575 - - GO:0016491,GO:0055114 AT1G10810.1 - NAD(P)-linked oxidoreductase superfamily protein Cre16.g651400 lower-confidence candidateI 1 10 0.304501010709 1.0 2 9 0.0420193202055 1.0 SP n - 17 - - g15757.t2,Cre16.g651400.t1.1, g15757.t1 PF00097 PTHR22764 - - - - AT2G27940.1 - RING/U-box superfamily protein Cre12.g489300 lower-confidence candidateI 2 9 0.0477586285942 1.0 1 10 0.286777961798 1.0 SP n downregulated 9 - - g12199.t1 - - - - - - - - - Cre04.g217911 lower-confidence candidateI 2 9 0.0477586285942 1.0 1 10 0.286777961798 1.0 O n upregulated 17 - - g4542.t1,Cre03.g211100.t1.1,Cre03.g211100.t1.2 - - - - - - - - - Cre12.g550152 lower-confidence candidateI 2 9 0.0477586285942 1.0 0 11 1.0 1.0 SP n - 10 - - g13546.t1 PF12253 PTHR15272 - - - - AT1G65470.1 FAS1,NFB2 chromatin assembly factor-1 (FASCIATA1) (FAS1) Cre12.g539650 lower-confidence candidateI 2 10 0.0560997482746 1.0 2 10 0.0494288322474 1.0 SP n - 16 - - g13782.t1 PF08016 - - - - - - - - Cre10.g427800 lower-confidence candidateI 2 10 0.0560997482746 1.0 2 10 0.0494288322474 1.0 SP n - 17 - - g10566.t1 PF01822 - - - - - - - - Cre02.g112300 CAL3,MOT15 lower-confidence candidateI 5 57 0.0509884111241 1.0 4 58 0.118413124599 1.0 O n downregulated 10 Calpain family cysteine protease Calpain family cysteine protease. Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g2312.t1,CAL3 PF00648 PTHR10183:SF154,PTHR10183 - - - GO:0004198,GO:0005622,GO:0006508 AT1G55350.5 ATDEK1,DEK1,EMB1275,EMB80 calpain-type cysteine protease family Cre13.g606750 - 0 105 0.0523622794294 1.0 2 103 0.773595243084 1.0 O n - - - - g14628.t1 PF00023,PF00642 PTHR12447 KOG3227 - - GO:0005515,GO:0003676,GO:0008270 AT2G35430.1 - Zinc finger C-x8-C-x5-C-x3-H type family protein Cre13.g572900 THO3 lower-confidence candidateI 2 10 0.0560997482746 1.0 1 11 0.308355155377 1.0 C n upregulated 5 Oligopeptidase A Belongs to M3 family of metalloproteases, like thimet oligopeptidase; most similar to higher plant homologues; possibly organelle-targetted, like At5g65620Previously annotated as THO3 but this conflicts with series for Tho complex subunits g14088.t2,THO3, g14088.t1,THO3 PF01432 PTHR11804:SF7,PTHR11804 KOG2089 3.4.24.70 K01414 GO:0004222,GO:0006508 AT5G10540.1 - Zincin-like metalloproteases family protein Cre10.g424050 lower-confidence candidateI 3 24 0.056147563293 1.0 1 26 0.563694322808 1.0 M n - 17 - - g10486.t1 - - - - - - - - - Cre07.g340450 lower-confidence candidateI 0 13 1.0 1.0 2 11 0.0572670849882 1.0 SP n downregulated 15 - - g7919.t1 PF01833,PF10162,PF07691 PTHR25069:SF29,PTHR25069 - - - GO:0005515 - - - Cre16.g676600 lower-confidence candidateI 2 11 0.0649033549459 1.0 2 11 0.0572670849882 1.0 M n upregulated 2 - - g16583.t1 - - - - - - - - - Cre03.g151400 lower-confidence candidateI 2 11 0.0649033549459 1.0 2 11 0.0572670849882 1.0 O n - 8 - - g3081.t1 PF00005 PTHR19229 KOG0927 - K05645 GO:0005524,GO:0016887 AT2G41700.1 ABCA1,AtABCA1 ATP-binding cassette A1 Cre02.g115500 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - - - - g2387.t1,Cre02.g115500.t1.1 - - - - - - - - - Cre09.g397771 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 C n - 1 - - g9873.t1,Cre02.g134800.t1.1 - - - - - - - - - Cre03.g169350 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 C n - 11 - - g3486.t1 - - KOG1003 - - - - - - Cre13.g581900 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - 1 - - g14289.t1 - - - - - - - - - Cre03.g209953 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M n - 17 - - g4457.t1,Cre19.g755850.t1.1, g4457.t2,Cre19.g755850.t2.1 PF00847 - - - - GO:0003700,GO:0006355 AT2G39250.1 SNZ Integrase-type DNA-binding superfamily protein Cre06.g279300 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 14 - - g6494.t1,Cre06.g279300.t1.1 PF00560 PTHR23155,PTHR23155:SF266 - - - GO:0005515 AT1G53420.1 - Leucine-rich repeat transmembrane protein kinase Cre06.g278178 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 12 - - g6321.t1,Cre13.g597200.t1.1,Cre13.g597200.t1.2 PF09495 - - - - - - - - Cre09.g397300 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M n - 15 - - g9336.t1,Cre09.g397300.t1.1 PF02190 - - - - GO:0004176,GO:0006508 - - - Cre17.g729700 CGL133 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O Y - 10 - - g17635.t1,Cre17.g729700.t1.1 PF07919,PF11817 - - - - - AT5G65950.1 - - Cre10.g441750 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 14 - - g10870.t1,Cre10.g441750.t1.1 - PTHR11772 - - - - AT5G43830.1 - Aluminium induced protein with YGL and LRDR motifs Cre16.g684250 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n upregulated 17 - - g16413.t1 - - - - - - - - - Cre08.g363874 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M n - 11 - - g8522.t1, g8522.t2 - PTHR22931,PTHR22931:SF1 - - - - AT1G10760.1 GWD,GWD1,SEX1,SOP,SOP1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Cre12.g493550 THK3 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 O n - 10 - - g12079.t1,Cre12.g493550.t1.1,THK3 PF00515 PTHR11652:SF12,PTHR11652 - - K12600 GO:0005515,GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT1G76630.2 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre13.g605050 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - - - - g14594.t1 PF12460 PTHR12891 - - - - AT5G48120.1 - ARM repeat superfamily protein Cre09.g389986 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 M n - 7 - - g9656.t1,Cre02.g125200.t1.1, g9656.t2,Cre02.g125200.t2.1 - PTHR15377:SF2,PTHR15377 KOG3634 - - - - - - Cre07.g349300 HEL41 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 M n - 1 - - g8127.t1,Cre07.g349300.t1.1,HEL41 PF00271,PF00270 PTHR24031,PTHR24031:SF8 KOG0327 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G12770.1 EMB1586,ISE1 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre12.g516717 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 SP n - - - - g12745.t2, g12745.t1 - - - - - - - - - Cre10.g451050 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - 8 - - g11085.t1 - - KOG3262 - - - - - - Cre12.g501750 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 11 - - g12538.t1 - - - - - - - - - Cre09.g401750 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - - - - g9229.t1 PF02668 PTHR10696 - - - GO:0016491,GO:0055114 - - - Cre02.g114400 LAS2,LIPA2 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - 4 Lipoic acid synthetase Catalytic/ iron ion binding; lipoate synthase; lipoic acid synthase. Previously annotated as LIPA2 g2362.t1,Cre02.g114400.t1.1,LAS2,LIPA2 PF04055 PTHR10949,PTHR10949:SF0 KOG2672 2.8.1.8 K03644 GO:0003824,GO:0051536,GO:0009107,GO:0016992,GO:0051539 AT5G08415.1 - Radical SAM superfamily protein Cre17.g721517 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - - - - g17457.t2,Cre17.g721550.t2.1, g17457.t1,Cre17.g721550.t1.2 - - - - - - AT4G22350.1 - Ubiquitin C-terminal hydrolases superfamily protein Cre16.g690150 GTR21 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - - Glycosyltransferase, type ALG6, ALG8 - g16200.t1,Cre16.g690150.t1.1,GTR21 PF03155 PTHR12413 KOG2575 2.4.1.- K03848 GO:0005789,GO:0016758 AT5G38460.1 - ALG6, ALG8 glycosyltransferase family Cre06.g262650 OPR22 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - 4 - - g5900.t1 PF08373 - - - - - - - - Cre16.g663150 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M n - - - - g16010.t1,Cre16.g663150.t1.1 PF00581 - KOG1530 - - - AT5G66170.3 STR18 sulfurtransferase 18 Cre02.g077925 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M n - 17 - - g1407.t1,Cre02.g077950.t1.3 - - - - - - - - - Cre17.g719400 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M n - - - - g17408.t1 - PTHR13271 - - - - - - - Cre01.g031400 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 8 - - g710.t1,Cre01.g031400.t1.1 - - - - - - - - - Cre06.g278172 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - - Endosomal R-SNARE protein, Vamp7/Nyv1-family (R.III) Endosomal R-SNARE protein, Vamp7/Nyv1-family (R.III). Conserved Protein. Class R.III SNARE, involved in Golgi/PM and Golgi/endosomal trafficking (PMID: 17596510). Most similar to VAMP71-family of land plants. Previously annotated as VAMP75 g6315.t1,Cre13.g596900.t1.1,Cre13.g596900.t1.2 PF00957 PTHR21136,PTHR21136:SF77 KOG0859 - K08515 GO:0016021,GO:0016192 AT5G11150.1 ATVAMP713,VAMP713 vesicle-associated membrane protein 713 Cre06.g306000 GOX3 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - 3 Glyoxal or galactose oxidase The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate g7082.t1,GOX3 PF09118,PF07250 - KOG0487 - - - AT3G57620.1 - glyoxal oxidase-related protein Cre09.g387763 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 O n downregulated 16 - - g9595.t1,Cre02.g122300.t1.1 PF07479,PF01210 PTHR11728 KOG2711 - - GO:0004367,GO:0006072,GO:0009331,GO:0055114,GO:0005975,GO:0016614,GO:0005737,GO:0016616,GO:0046168,GO:0051287 AT2G40690.1 GLY1,SFD1 NAD-dependent glycerol-3-phosphate dehydrogenase family protein Cre03.g184550 CPLD28 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O Y - 4 Predicted protein Conserved expressed protein, chloroplast location predicted in Arabidopsis g3824.t1,Cre03.g184550.t1.1 PF09353 - - - - - AT1G73060.1 LPA3 Low PSII Accumulation 3 Cre07.g348300 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - - - - g8104.t1,Cre07.g348300.t1.1 - - - - - - - - - Cre16.g681800 IPK - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 SP n - 9 - - g16468.t1,IPK PF05770 - - - - GO:0000287,GO:0005524,GO:0005622,GO:0032957,GO:0035300,GO:0047325 - - - Cre07.g326010 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 O n - - - - g7582.t1,Cre07.g326010.t1.1 - - - - - - - - - Cre12.g548700 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - 15 - - g13575.t3, g13575.t1,Cre12.g548700.t1.1, g13575.t2 - - - - - - - - - Cre13.g578600 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 8 - - g14214.t1 - - - - - - - - - Cre08.g372000 CGLD6,CGLD11 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C Y - 4 Predicted protein Conserved protein g8714.t1,Cre08.g372000.t1.1,CGLD11 - - - - - - AT2G21385.1 - - Cre12.g509100 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 O n - - - - g12370.t1,Cre12.g509100.t1.1 - - - - - - - - - Cre09.g395362 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - 14 - - g9807.t1,Cre02.g131800.t1.1,Cre02.g131800.t1.2 PF03055 PTHR10543,PTHR10543:SF21 - - - - AT3G63520.1 ATCCD1,ATNCED1,CCD1,NCED1 carotenoid cleavage dioxygenase 1 Cre02.g142687 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 10 - - g2791.t2, g2791.t1 PF00025 PTHR11711 KOG0070 - K07977 GO:0005525 AT1G10630.1 ARFA1F,ATARFA1F ADP-ribosylation factor A1F Cre01.g069837 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 15 - - g1285.t1,Cre23.g765950.t1.1 PF00027 - - - - - - - - Cre16.g683595 CAX4 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - - CAX family cation antiporter, membrane protein Related to Ca2+/Na+ exchanger; cation exchanger family (CAX) [PMID: 15710683] g16805.t1,Cre01.g069550.t1.1,CAX4 PF01699 PTHR12266 KOG2399 - - GO:0016021,GO:0055085 AT1G54115.1 ATCCX4,CCX4 cation calcium exchanger 4 Cre03.g144031 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 SP n - 16 - - g2865.t1,Cre01.g056400.t1.1 - - - - - - - - - Cre13.g568250 TEH11 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 13 - - g13983.t1,TEH11 PF00975,PF00144 PTHR11487 - - - GO:0009058,GO:0016788 - - - Cre17.g735750 EFH11 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M n - 12 - - g17798.t1,Cre17.g735750.t1.1,EFH11 - - - - - - - - - Cre09.g412100 PSAF - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C Y - 6 Photosystem I reaction center subunit III Plastocyanin binding subunit g10203.t1,Cre09.g412100.t1.1 PF02507 - - - K02694 GO:0009522,GO:0009538,GO:0015979 AT1G31330.1 PSAF photosystem I subunit F Cre07.g356960 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 11 - - g8298.t1,Cre07.g356951.t1.2 - - - - - - - - - Cre04.g220825 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M n - - - - g4820.t1,Cre04.g220815.t1.2 PF10601 PTHR19241,PTHR19241:SF88 - - - - - - - Cre02.g080350 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 8 - - g1468.t1 PF02148,PF00443,PF00627 PTHR24006,PTHR24006:SF260 - 3.1.2.15 K11836 GO:0008270,GO:0004221,GO:0006511,GO:0005515 AT3G20630.1 ATUBP14,PER1,TTN6,UBP14 ubiquitin-specific protease 14 Cre17.g733950 CGL152 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 12 - - g17742.t1,Cre17.g733950.t1.1 - - - - - - - - - Cre03.g175700 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - - - - g3629.t1,Cre03.g175700.t1.1 PF07683,PF02492 PTHR13748,PTHR13748:SF28 - - - - AT1G80480.1 PTAC17 plastid transcriptionally active 17 Cre12.g501950 PPP39 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - 9 - - g12534.t1,PPP39 PF00481 PTHR13832,PTHR13832:SF174 - - - GO:0003824 AT2G25070.1 - Protein phosphatase 2C family protein Cre12.g486000 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - - - - g12277.t1,Cre12.g486000.t1.1 PF01753 - - - - GO:0008270 - - - Cre05.g237283 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 SP n - 15 - - g5459.t1, g5459.t2 - PTHR11566:SF21,PTHR11566 - - - - - - - Cre01.g038350 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - 13 - - g858.t1 - - - - - - - - - Cre03.g161000 ADA1 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 9 - - g3299.t1,ADA1 PF00962 PTHR11409 KOG1097 3.5.4.4 K01488 GO:0009168,GO:0019239 AT4G04880.1 - adenosine/AMP deaminase family protein Cre10.g440450 PSB28 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C Y upregulated 4 Photosystem II subunit 28 - g10841.t1,Cre10.g440450.t1.1 PF03912 - - - K08903 GO:0009523,GO:0009654,GO:0015979,GO:0016020 AT4G28660.1 PSB28 photosystem II reaction center PSB28 protein Cre16.g691400 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M n - 15 - - g15654.t1 PF01753 - - - - GO:0008270 - - - Cre06.g258700 PYC1 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 3 Pyruvate carboxylase Pyruvate carboxylase [EC:6.4.1.1]; a biotin-dependent enzyme; catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate; enzyme is essential in gluconeogenesis g5817.t1,PYC1 PF02436,PF02785,PF00682,PF00364,PF02786,PF00289 PTHR18866:SF10,PTHR18866 - 6.4.1.1 K01958 GO:0016874,GO:0003824,GO:0005524,GO:0008152 AT1G03090.2 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) Cre03.g189800 CYN38 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C Y - 6 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (40 kDa thylakoid lumen rotamase); found in thylakoid proteome based on mass spectrometric identification of multiple peptides [PMID: 17078018]; based on homology and RR motif, probably located in g3930.t1,Cre03.g189800.t1.1,CYN38 PF00160 PTHR11071:SF75,PTHR11071 KOG0881 - - GO:0003755,GO:0006457 AT3G01480.1 ATCYP38,CYP38 cyclophilin 38 Cre12.g557000 APG12 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C Y - 14 Autophagy-related protein Expressed Protein. Similar to APG12, an ubiquitin-like protein conjugated onto other proteins during autophagy g13388.t1,Cre12.g557000.t1.1,APG12 PF04110 PTHR13385 KOG3439 - K08336 GO:0000045,GO:0005737 AT3G13970.1 APG12,APG12B Ubiquitin-like superfamily protein Cre13.g571300 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n downregulated 9 - - g14049.t1,Cre13.g571300.t1.1 - - - - - - - - - Cre04.g216100 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - 10 - - g4647.t1 PF00903 PTHR10374 KOG2944 4.4.1.5 K01759 - AT1G08110.1 - lactoylglutathione lyase family protein / glyoxalase I family protein Cre03.g198863 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - - - - g4356.t1 PF01789 - - - - GO:0005509,GO:0009523,GO:0009654,GO:0015979,GO:0019898 - - - Cre04.g229300 RCA1 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C Y - 6 Rubisco activase RubisCO activase, chloroplast precursor; required for optimal photosynthesis in a low CO2 atmosphere [PMID: 16667924; independent cDNA sequence: M62962]. g5019.t1 PF00004 PTHR11603,PTHR11603:SF153 KOG0651 - - GO:0005524 AT2G39730.2 RCA rubisco activase Cre07.g350700 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - - - - g8159.t1 - - - - - - - - - Cre02.g110500 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 1 - - g2268.t1 - - - - - - - - - Cre17.g705836 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M n - - - - g17107.t1,Cre17.g705836.t1.1 - - - - - - - - - Cre13.g587050 ERF1 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 2 Eukaryotic release factor Eukaryotic release factor, involved in translation termination g14403.t1,Cre13.g587050.t1.1,ERF1 PF03463,PF03465,PF03464 PTHR10113 KOG0688 - K03265 GO:0005737,GO:0006415,GO:0016149 AT3G26618.1 ERF1-3 eukaryotic release factor 1-3 Cre01.g032500 DNJ8 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - 5 DnaJ-like protein DnaJ-like protein; might be targeted to ER, as judged from homology with tomato Q7XYV1, Arabidopsis Q9LYW9, and rice Q6H7Q3, which by TargetP are all predicted to secretory pathway; contains C-terminal J-domain (pfam00226) and N-terminal TPR domain (cd001 g735.t1,Cre01.g032500.t1.1 PF07719,PF00226,PF00515 PTHR24078:SF56,PTHR24078 KOG0550 - - GO:0031072,GO:0005515 AT5G03160.1 ATP58IPK,P58IPK homolog of mamallian P58IPK Cre01.g022681 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 O n - 15 - - g524.t2, g524.t1 - - - - - - - - - Cre10.g432050 FAP284 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 O n - 14 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g10663.t2, g10663.t1,Cre10.g432050.t1.1 - - - - - - - - - Cre09.g393728 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 O n - 13 - - g9762.t1,Cre02.g129750.t1.1,Cre02.g129750.t1.2 PF09273,PF00856 PTHR13271 - - - GO:0005515 AT3G07670.1 - Rubisco methyltransferase family protein Cre03.g177100 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - 7 - - g3661.t1,Cre03.g177100.t1.1 PF03330 - - - - - - - - Cre02.g144750 PTB4 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 3 Sodium/phosphate symporter Putative phosphate transporter, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters; present in a cluster of four highly related PTB family members on scaffold 24, including PTB9, PTB12 and PTB5. g2575.t1,PTB4 PF01384 PTHR11101:SF7,PTHR11101 KOG2493 - K14640 GO:0005315,GO:0006817,GO:0016020 AT3G26570.1 ORF02,PHT2;1 phosphate transporter 2;1 Cre03.g173900 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 C n - 16 - - g3587.t1,Cre03.g173900.t1.1 - PTHR22996 KOG4265 - - - AT3G53410.1 - RING/U-box superfamily protein Cre13.g577500 VTI1 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - - Endosomal Qb-SNARE, Vti1-family (Qb.III.b) Endosomal Qb-SNARE/vSNARE, Vti1-family (Qb.III.b). Expressed Protein. Class Qb.III.b SNARE, involved in Golgi/Endosomal trafficking (PMID: 17596510). Previously annotated as VTI1 g14190.t1,VTI1, g14190.t2,Cre13.g577500.t1.1,VTI1 PF12352,PF05008 PTHR21230:SF16,PTHR21230 KOG1666 - K08493 GO:0006886,GO:0016020 AT1G26670.1 ATVTI12,VTI12,VTI1B Vesicle transport v-SNARE family protein Cre12.g498550 CHLM,MPM1 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C Y - 4 Magnesium protoporphyrin O-methyltransferase Magnesium protoporphyrin IX S-adenosyl methionine O-methyl transferase, chloroplast precursor (Magnesium-protoporphyrin IX methyltransferase) (PPMT); Magnesium-protoporphyrin O-methyltransferase (chlM) [PMID: 12828371; PMID: 12489983; PMID: 4436384]; Chlo g12614.t1,MPM1 PF07109 PTHR10108:SF59,PTHR10108 KOG1270 2.1.1.11 K03428 GO:0015979,GO:0015995,GO:0046406 AT4G25080.1 CHLM magnesium-protoporphyrin IX methyltransferase Cre13.g608000 CPLD52 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M Y - 6 Predicted protein Conserved expressed protein; may the target of a miRNA (CrsRNA2107) that targets cleavage the near end of the CDS (PMID: 17538623) g14656.t1,Cre13.g608000.t1.1 - PTHR10366,PTHR10366:SF69 - - - - AT2G39080.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre06.g257800 POL1B,POL1-1 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 C n - 10 DNA polymerase I, probably mitochondrial Homologous to prokaryotic DNA polymerase I. Involved in DNA repair and functions in mitochondria (or chloroplast). See Burgers et al. (2001) (PMID: 11579108). Previously annotated as POL1B g5795.t1,POL1-1,POL1B PF00476 PTHR10133 - - - GO:0003677,GO:0003887,GO:0006260 AT4G32700.2 TEB helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding Cre06.g279500 CPL6 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 C Y - 3 Predicted protein Conserved expressed protein g6499.t1 - - - - - - AT5G61670.1 - - Cre01.g029650 VPS35 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 9 Subunit of Retromer complex Expressed Protein. Similar to VPS35, a component of the Retromer Coat complex involved in endosomal to Golgi trafficking; may still need editing at 3\' end due to sequence gap. g674.t1,VPS35 PF03635 PTHR11099 KOG1107 - - - AT2G17790.1 VPS35A,ZIP3 VPS35 homolog A Cre02.g084350 CGLD1 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 SP Y - 4 Predicted protein Putative plastid protein g1556.t1,Cre02.g084350.t1.1 PF01169 PTHR12608 KOG2881 - - GO:0016020 AT1G64150.1 - Uncharacterized protein family (UPF0016) Cre08.g366050 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 6 - - g8578.t1,Cre08.g366050.t1.1 PF00293 - - - - GO:0016787 AT1G79690.1 atnudt3,NUDT3 nudix hydrolase homolog 3 Cre07.g354550 FAP65 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M n - 8 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g8247.t1,FAP65 - - KOG3910 - - - - - - Cre16.g672500 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 10 - - g16675.t1,Cre16.g672500.t1.1 PF07160 - KOG4832 - - - AT3G60660.1 - - Cre09.g410350 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - 10 - - g10167.t1 - - - - - - - - - Cre10.g439950 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n upregulated - - - g10831.t1 - - KOG0702 - - - - - - Cre04.g220787 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - - - - g4818.t1,Cre04.g220787.t1.1 - - - - - - - - - Cre16.g659500 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - - - - g15931.t1,Cre16.g659500.t1.1 PF04488 PTHR12042,PTHR12042:SF4 - 2.4.1.228 K01988 - AT2G38152.1 - alpha 1,4-glycosyltransferase family protein Cre01.g040050 TPK1 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n upregulated 1 Thiamine pyrophosphokinase Thiamine pyrophosphokinase. Generates co-enzyme form of thiamine, thiamine pyrophosphate (TPP). Not involved in the direct biosynthesis of thiamine. g894.t1,TPK1 PF04263,PF04265 PTHR13622 KOG3153 2.7.6.2 K00949 GO:0004788,GO:0005524,GO:0009229 AT1G02880.3 TPK1 thiamin pyrophosphokinase1 Cre02.g112100 FAP101,C1a-86 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein with weak similarity to a kinase regulatory subunit; found in the flagellar proteome [PMID: 15998802]. Also known as C1a-86 g2307.t1,C1a-86 - - - - - - - - - Cre04.g218800 THB3 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 M n - 17 Truncated hemoglobin Truncated hemoglobin, plastid-located. Orthologous to C. eugametos LI637 and LI410 [PMID: 8177215, PMID: 10563822]; Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, other eubacteria and unicellular eukaryo g4769.t1,THB3 PF01152 - - - - GO:0015671,GO:0019825 - - - Cre03.g174600 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 10 - - g3605.t1 - PTHR22884,PTHR22884:SF58 - - - - AT1G04020.1 ATBARD1,BARD1,ROW1 breast cancer associated RING 1 Cre16.g689050 ACO1 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 C n - 17 - - g16176.t1,ACO1 PF01756,PF02770 PTHR10909,PTHR10909:SF11 KOG0136 1.3.3.6 K00232 GO:0003997,GO:0005777,GO:0006635,GO:0055114,GO:0003995 AT2G35690.1 ACX5 acyl-CoA oxidase 5 Cre03.g203009 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M n - 8 - - g4393.t1,Cre19.g753100.t1.1 - - - - - - - - - Cre11.g467708 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 O n - 3 - - g11638.t2,Cre18.g743650.t1.1,Cre18.g743650.t1.2, g11638.t1,Cre18.g743650.t2.1 - - - - - - - - - Cre03.g151200 CGLD16 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C Y - 7 Predicted protein Conserved expressed protein g3077.t1,Cre03.g151200.t1.1 - - - - - - AT4G13500.1 - - Cre12.g489650 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 M n - 8 - - g12192.t1 - - - - - - - - - Cre08.g363700 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 11 - - g8518.t1 - PTHR11375 KOG2739 - - - AT3G50690.1 - Leucine-rich repeat (LRR) family protein Cre02.g144850 CGLD26 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C Y - 14 Predicted protein Conserved expressed protein, alternatively spliced isoform CGLD26a; contains a coiled-coil region; probably chloroplast targeted; Conserved expressed protein; alternatively spliced isoform CGLD26b; contains a coiled-coil region; probably chloroplast targe g2572.t1,Cre02.g144850.t1.1 - - - - - - AT4G24090.1 - - Cre07.g342052 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - - - - g7946.t1 - - - - - - - - - Cre12.g554953 ETF2 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 16 Electron transfer flavoprotein beta subunit Putative electron transfer flavoprotein beta-subunit, mitochondrial; the electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It g13818.t1,Cre27.g775600.t1.1,Cre27.g775600.t1.2,ETF2 PF01012 PTHR21294 KOG3180 - K03521 GO:0009055 AT5G43430.1 ETFBETA electron transfer flavoprotein beta Cre09.g414800 CPY - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - 14 - - g10271.t2,CPY, g10271.t1,Cre09.g414800.t1.1,CPY PF00450 PTHR11802,PTHR11802:SF8 KOG1282 4.1.2.11 K08249 GO:0004185,GO:0006508 AT3G02110.1 scpl25 serine carboxypeptidase-like 25 Cre09.g387504 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - 11 - - g9588.t1,Cre02.g121950.t1.1,Cre02.g121950.t1.2 PF04420 - - - - - AT4G16444.1 - - Cre07.g337850 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 15 - - g7859.t1 PF00083 PTHR24064:SF145,PTHR24064 KOG0253 - K06258 GO:0016021,GO:0022857,GO:0055085 AT3G13050.1 - Major facilitator superfamily protein Cre14.g633650 PRP6 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - - Splicing factor, component of the U4/U6-U5 snRNP complex Splicing factor, component of the U4/U6-U5 snRNP complex. Contains TPR repeats. Homologue of S. cerevisiae Prp6 protein g15277.t1,PRP6 PF06424 PTHR11246,PTHR11246:SF1 KOG0495 - K12855 GO:0000398,GO:0005634 AT4G03430.1 EMB2770,STA1 pre-mRNA splicing factor-related Cre02.g093950 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - 1 - - g1775.t1,Cre02.g093950.t1.1 PF00696 PTHR26059,PTHR26059:SF1 - 2.7.4.22 K09903 GO:0008652 AT3G18680.1 - Amino acid kinase family protein Cre02.g142146 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n upregulated 4 - - g2755.t1,Cre15.g646250.t1.1,Cre15.g646250.t1.2 PF05368 PTHR14194,PTHR14194:SF21 KOG1203 - - - AT4G35250.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre07.g334025 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - 8 - - g7780.t1 - - - - - - - - - Cre07.g315650 SMM23 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 7 - - g7303.t1,Cre07.g315650.t1.1,SMM23 PF08241 PTHR10108,PTHR10108:SF386 - - - GO:0008152,GO:0008168 - - - Cre06.g286600 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 12 - - g6659.t1 - PTHR12473,PTHR12473:SF4 - - - - AT1G43690.1 - ubiquitin interaction motif-containing protein Cre03.g154500 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 8 - - g3148.t1,Cre03.g154500.t1.1 PF03164 PTHR13027 KOG0997 - - - AT2G28390.1 - SAND family protein Cre01.g054200 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 O n - 12 - - g1197.t1,Cre01.g054200.t1.1 - - - - - - - - - Cre03.g162500 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 O n downregulated 12 - - g3331.t1 PF00097 - - - - - - - - Cre08.g363350 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 14 - - g8510.t1 PF02037 - - - - GO:0003676 - - - Cre11.g467622 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 6 - - g11553.t1,Cre18.g747500.t1.1,Cre18.g747500.t1.2 PF00248 PTHR11732:SF12,PTHR11732 KOG1575 - - GO:0016491,GO:0055114 AT1G60710.1 ATB2 NAD(P)-linked oxidoreductase superfamily protein Cre07.g354976 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - 14 - - g8256.t1 - - - - - - - - - Cre15.g635300 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - - - - g15321.t1 - - - - - - - - - Cre05.g242750 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - 14 - - g5295.t1 PF00082,PF02225 PTHR10795,PTHR10795:SF112 - - - GO:0004252,GO:0006508 AT1G04110.1 SDD1 Subtilase family protein Cre02.g143550 ELI4,LCI16 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n upregulated 4 Early light-inducible protein A homolog of ELIP (early light-inducible protein) gene which was originally identified as transiently expressed during the early phase of greening in etiolated pea seedlings [PMID: 6692824]. It has three TMH, whose sequences are closely related to LHC pro g2612.t1,Cre02.g143550.t1.1,ELI4 PF00504 PTHR14154 - - - - - - - Cre15.g634701 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 SP n - 10 - - g15304.t1 PF00098,PF00270 PTHR13710 - - - GO:0003676,GO:0008270,GO:0006310,GO:0008026,GO:0005524 AT1G27880.1 - DEAD/DEAH box RNA helicase family protein Cre02.g104700 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 O n - 15 - - g2142.t1,Cre02.g104700.t1.1 PF03110 - - - - GO:0003677,GO:0005634 AT3G60030.1 SPL12 squamosa promoter-binding protein-like 12 Cre01.g011950 - 1 1 0.0638960787828 1.0 1 1 0.0596030753661 1.0 C n - 10 - - g296.t1 - - - - - - - - - Cre03.g199983 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 O n - 8 - - g4366.t1,Cre19.g751950.t1.1,Cre19.g751950.t1.2 PF00149 PTHR11668,PTHR11668:SF21 KOG0371 3.1.3.16 K04382 GO:0016787 AT1G59830.1 PP2A-1 protein phosphatase 2A-2 Cre02.g093500 SSD1 - 0 2 1.0 1.0 1 1 0.0596030753661 1.0 SP n - - Sterol sensing 5-transmembrane protein Contains a sterol sensing 5-transmembrane domain similar to those in SCAP, Patched, NPC1 and HMGR g1765.t1,Cre02.g093500.t1.1,SSD1, g1765.t2,SSD1 PF02460 PTHR10796,PTHR10796:SF32 KOG1934 - - GO:0008158,GO:0016020 AT4G38350.1 - Patched family protein Cre11.g477800 HDA10 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 11 - - g11862.t1,HDA10 PF00023,PF00850 PTHR10625,PTHR10625:SF22 KOG4412 - - GO:0005515 AT4G33470.1 ATHDA14,hda14 histone deacetylase 14 Cre13.g563200 HAD7 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - - - - g13858.t1,HAD7 PF00702 PTHR12725,PTHR12725:SF8 KOG3085 - - GO:0003824,GO:0008152 AT1G79790.1 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre14.g622750 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 M n - - - - g15009.t1 PF04134 - - - - - AT1G52590.1 - Putative thiol-disulphide oxidoreductase DCC Cre01.g040750 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 17 - - g913.t1 - - - - - - - - - Cre12.g549200 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - - - - g13564.t1 - - - - - - - - - Cre08.g362019 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 C n - - - - g8477.t1 - - - - - - - - - Cre09.g398845 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 SP n - - - - g9903.t1,Cre02.g135850.t1.1,Cre02.g135850.t1.2 - - - - - - AT4G33625.1 - - Cre12.g540200 HEL58 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 1 - - g13772.t1,Cre12.g540200.t1.1,HEL58 PF00271,PF00270 PTHR24031,PTHR24031:SF101 KOG0335 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G55150.1 - DEA(D/H)-box RNA helicase family protein Cre05.g236100 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 11 - - g5428.t1 - - - - - - - - - Cre06.g278125 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - - - - g6271.t1,Cre13.g594750.t1.1,Cre13.g594750.t1.2 PF09379,PF00784,PF00225,PF00373 PTHR24115:SF172,PTHR24115 KOG0239 - - GO:0005856,GO:0003777,GO:0005524,GO:0007018 AT5G65930.3 KCBP,PKCBP,ZWI kinesin-like calmodulin-binding protein (ZWICHEL) Cre02.g078200 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 15 - - g1414.t3, g1414.t2, g1414.t1 - - - - - - - - - Cre16.g680005 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 11 - - g16773.t1,Cre01.g068050.t1.1 - - - - - - - - - Cre16.g692004 DNJ21 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 M n upregulated 2 DnaJ-like protein DnaJ-like protein; contains N-terminal J-domain (pfam00226) and DnaJ_C, DnaJ C terminal region (pfam01556); similar to Q5MJ90_CHLRE Radial spoke protein 16, Arabidopsis Q8L8S5, and Giardia lamblia Q7R3P4 g16880.t1,Cre01.g072950.t1.1,DNJ21 PF01556 - - - - GO:0006457,GO:0051082 AT3G08910.1 - DNAJ heat shock family protein Cre11.g475000 IFT121 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 12 Intraflagellar transport protein 121 Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome as FBB1 [PMID: 15137946]; upregulated by deflagellation. Previously annotated as FAP118. Corresponds to IFI121 subunit of com g11801.t1 PF00400 PTHR16517:SF1,PTHR16517 KOG2041 - - - - - - Cre06.g285050 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 11 - - g6627.t1 - - - - - - - - - Cre01.g054400 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 7 - - g1201.t1 - - - - - - - - - Cre04.g227850 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 SP n upregulated 14 - - g4986.t1 - - - - - - - - - Cre02.g142266 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 C n - 3 Cytochrome P450, CYP97 superfamily; carotenoid hydroxylase Cytochrome P450, CYP97 superfamily. CYP97A3 of Arabidopsis is a carotenoid beta-ring hydroxylase [PMID: 16492736]. CYP97C1 of Arabidopsis (LUT1) is a carotenoid epsilon-ring hydroxylase [PMID: 14709673]. Previously annotated as CYP97A5 g2761.t1,Cre15.g645950.t1.1,Cre15.g645950.t1.2 PF00067 PTHR24290,PTHR24290:SF151 KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT1G31800.1 CYP97A3,LUT5 cytochrome P450, family 97, subfamily A, polypeptide 3 Cre02.g104550 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - - - - g2139.t1,Cre02.g104550.t1.1 PF05179 PTHR12466,PTHR12466:SF8 KOG3786 - - - AT3G22590.1 CDC73,PHP PLANT HOMOLOGOUS TO PARAFIBROMIN Cre16.g650450 FAP219 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g15737.t1,Cre16.g650450.t1.1 - - - - - - - - - Cre10.g439600 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 10 - - g10824.t1 PF05879 PTHR10751 KOG2203 - - GO:0016817 AT5G45160.1 - Root hair defective 3 GTP-binding protein (RHD3) Cre04.g219796 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 16 - - g4792.t1,Cre04.g219796.t1.1 - - - - - - - - - Cre11.g467695 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - - - - g11626.t1,Cre18.g744200.t1.1,Cre18.g744200.t1.2 - - - - - - - - - Cre16.g670850 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n upregulated 3 - - g16302.t1,Cre16.g670850.t1.1 - - KOG3544 - - - AT3G47890.1 - Ubiquitin carboxyl-terminal hydrolase-related protein Cre09.g408300 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 11 - - g10119.t1,Cre09.g408300.t1.1 - - - - - - - - - Cre03.g153200 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 16 - - g3120.t1 - - - - - - - - - Cre06.g281600 LCI23 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 M n - - Low-CO2-inducible protein, septin-like Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145], appears in their table as Lci22 rather than LC g6550.t2, g6550.t1,Cre06.g281600.t1.1 PF00735 PTHR18884,PTHR18884:SF30 - - - GO:0005525,GO:0007049 - - - Cre09.g402200 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 C n downregulated 9 - - g9220.t1 - - - - - - - - - Cre12.g493150 LTO1,CPLD41,VKE1 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O Y - 6 Vitamin K epoxide reductase Vitamin K epoxide reductase. Plant-lineage-and-diatoms conserved expressed membrane protein; Arabidopsis homolog predicted to be plastid targeted. Previously annotated as CPLD41 g12087.t1,Cre12.g493150.t1.1,VKE1,CPLD41 PF07884 - - - - - AT4G35760.1 - NAD(P)H dehydrogenase (quinone)s Cre12.g557078 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 SP n - 18 - - g13823.t1,Cre27.g775850.t1.1,Cre27.g775850.t1.2 PF01082,PF03351,PF03712 PTHR10157:SF15,PTHR10157 - - - GO:0004497,GO:0005507,GO:0004500,GO:0006584,GO:0055114 - - - Cre01.g025250 RFK2 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 C n - 4 Riboflavin kinase Biosynthesis of FMN from riboflavin and ATP g580.t1,RFK2 PF01687 PTHR22749 KOG3110 - - GO:0008531,GO:0009231 AT4G21470.1 ATFMN/FHY,FMN/FHY riboflavin kinase/FMN hydrolase Cre08.g375400 GSM1 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 M n - - - - g8844.t1,GSM1 - PTHR11850:SF49,PTHR11850 - - - - AT1G62990.1 IXR11,KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 Cre06.g278169 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 4 - - g6312.t1,Cre13.g596750.t1.1,Cre13.g596750.t1.2 - - - - - - - - - Cre16.g664500 BBS3B - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n upregulated 11 Bardet-Biedl syndrome-3 associated protein Expressed Protein. ARF-like GTPase, most similar to mammalian ARL6, no homologues found in angiosperms; homolog of Bardet-Biedl syndrome 3 in humans. May play a role in recruiting and assembling the BBSome onto membranes in flagella (see PMID: 20207729) g16042.t2,BBS3B, g16042.t1,Cre16.g664500.t1.1,BBS3B PF00025 PTHR11711,PTHR11711:SF21 KOG0070 - K07951 GO:0005525 AT5G14670.1 ARFA1B,ATARFA1B ADP-ribosylation factor A1B Cre07.g325757 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - - - - g7571.t1,Cre26.g773900.t1.1,Cre26.g773900.t1.2 - - - - - - - - - Cre16.g668150 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 SP n - - - - g16275.t1,Cre16.g668150.t1.1 - PTHR24106 - - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre09.g396289 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 M n - 17 - - g9832.t1,Cre02.g132900.t1.1 - - - - - - - - - Cre10.g442900 TNP25 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 10 - - g10894.t1,TNP25 PF07282 - - - - - - - - Cre14.g623100 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n upregulated 17 - - g15017.t1,Cre14.g623100.t1.1 - - - - - - - - - Cre07.g316450 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n upregulated 2 - - g7316.t1 PF08590,PF01713 - - - - - AT5G23520.1 - smr (Small MutS Related) domain-containing protein Cre08.g358581 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - - - - g8396.t1 - - - - - - - - - Cre14.g613250 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - - - - g14778.t1 - - KOG3454 - - - - - - Cre16.g649150 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 M n - 15 - - g15708.t1 - PTHR22904,PTHR22904:SF93 KOG4172 - - - AT2G38185.4 - RING/U-box superfamily protein Cre14.g624750 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 SP n - - - - g15051.t1,Cre14.g624750.t1.1 - - - - - - - - - Cre02.g146150 - 1 1 0.0638960787828 1.0 0 2 1.0 1.0 O n - 18 - - g2537.t1 - - - - - - - - - Cre03.g174100 - 2 11 0.0649033549459 1.0 1 12 0.329279161263 1.0 M n - 10 - - g3592.t1, g3592.t2, g3592.t3 PF08016 - KOG4462 - - - AT3G19020.1 - Leucine-rich repeat (LRR) family protein Cre03.g150800 - 2 11 0.0649033549459 1.0 1 12 0.329279161263 1.0 O n - 13 - - g3069.t1 PF00149 - - - - GO:0016787 AT4G23000.1 - Calcineurin-like metallo-phosphoesterase superfamily protein Cre12.g533500 - 2 11 0.0649033549459 1.0 1 12 0.329279161263 1.0 SP n - 16 - - g13124.t1,Cre12.g533500.t1.1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre01.g016570 - 2 11 0.0649033549459 1.0 1 12 0.329279161263 1.0 O n - 9 - - g396.t1 PF00069 PTHR26266,PTHR26266:SF61 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT3G13530.1 MAP3KE1,MAPKKK7 mitogen-activated protein kinase kinase kinase 7 Cre16.g675602 - 2 12 0.0741305720882 1.0 2 12 0.0655013099824 1.0 SP n - 8 - - g16130.t1,Cre01.g063500.t1.1 PF04756 PTHR12692 KOG2603 - - - AT1G61790.1 - Oligosaccharyltransferase complex/magnesium transporter family protein Cre13.g573150 FPN5 - 2 12 0.0741305720882 1.0 2 12 0.0655013099824 1.0 C n - 16 - - g14093.t1,FPN5 PF05761 PTHR12103:SF1,PTHR12103 KOG2469 - - - AT5G48960.1 - HAD-superfamily hydrolase, subfamily IG, 5\'-nucleotidase Cre05.g243452 - 2 12 0.0741305720882 1.0 2 12 0.0655013099824 1.0 M n - 16 - - g5275.t1 PF00023 - - - - GO:0005515 - - - Cre07.g325744 - 2 13 0.0837445631287 1.0 2 13 0.0741003315578 1.0 SP n - - - - g7559.t1,Cre26.g773450.t1.1,Cre26.g773450.t1.2 PF00354 PTHR19277 - - - - - - - Cre07.g342920 - 2 13 0.0837445631287 1.0 2 13 0.0741003315578 1.0 O n - 10 - - g7926.t1,Cre07.g342920.t1.1 PF00557,PF05195 PTHR10804,PTHR10804:SF17 KOG2737 3.4.13.9 K14213 GO:0009987,GO:0004177,GO:0030145 AT4G29490.1 - Metallopeptidase M24 family protein Cre07.g319350 - 2 13 0.0837445631287 1.0 2 13 0.0741003315578 1.0 SP n - 17 - - g7387.t1, g7387.t2 PF07714 PTHR23257:SF317,PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT5G03730.1 AtCTR1,CTR1,SIS1 Protein kinase superfamily protein Cre14.g625625 FTSH11 - 1 15 0.410308962986 1.0 2 14 0.0830345003773 1.0 M n - 5 - - g15070.t1 PF01434,PF00004 PTHR23076 KOG0737 - - GO:0004222,GO:0005524,GO:0006508 AT5G53170.1 FTSH11 FTSH protease 11 Cre11.g467663 - 2 14 0.093710439893 1.0 2 14 0.0830345003773 1.0 M n - 17 - - g11593.t1,Cre18.g745750.t1.1 PF01833,PF10162 PTHR25069,PTHR25069:SF115 - - - GO:0005515 AT2G10940.1 - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Cre10.g436000 - 2 13 0.0837445631287 1.0 1 14 0.36924615329 1.0 O n - 11 - - g10750.t1 PF01477 PTHR10877,PTHR10877:SF1 - - - GO:0005515 - - - Cre01.g016250 MLO4 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - 1 - - g386.t1,MLO4 PF03094 - - - - GO:0008219,GO:0016021 AT2G39200.1 ATMLO12,MLO12 Seven transmembrane MLO family protein Cre12.g538900 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - - - - g13249.t1,Cre12.g538900.t1.1 - PTHR22904,PTHR22904:SF94 - - - - AT3G25230.2 ATFKBP62,FKBP62,ROF1 rotamase FKBP 1 Cre01.g037500 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - - - - g841.t1,Cre01.g037500.t1.1 PF00240 - - - - GO:0005515 AT1G55060.1 UBQ12 ubiquitin 12 Cre07.g316550 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - 13 - - g7319.t1 - - - - - - - - - Cre14.g622550 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 M n - 1 - - g15005.t1 PF00899 PTHR10953 - - - GO:0003824 AT5G37530.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre11.g467538 GOX8 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - 12 Glyoxal or galactose oxidase The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate g11468.t1,Cre18.g750800.t1.1,GOX8 PF09118,PF07250 - - - - - AT3G57620.1 - glyoxal oxidase-related protein Cre13.g591400 COA1 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 17 - - g14502.t1,COA1 PF01937,PF03630 PTHR12280,PTHR12280:SF10 KOG2201 2.7.1.33 K09680 GO:0004594,GO:0005524,GO:0015937 AT4G32180.1 ATPANK2,PANK2 pantothenate kinase 2 Cre02.g119350 TMG2 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 2 - - g2476.t1,Cre02.g119350.t1.1,TMG2 PF01746 PTHR13563 KOG2967 - - - AT5G47680.1 - - Cre12.g501100 TRM2A,TMU3 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 12 tRNA (uracil-5-)-methyltransferase tRNA methyltransferase, catalyzes the transfer of a methyl group from S-adenosylmethionine to position 5 of the uridine residue at position 54 of tRNAs. Previously annotated as TRM2A g12554.t1,Cre12.g501100.t1.1,TMU3,TRM2A PF05958 PTHR11061 - 2.1.1.- K00599 GO:0006396,GO:0008173 AT3G21300.1 - RNA methyltransferase family protein Cre07.g344260 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 14 - - g8011.t1,Cre07.g344260.t1.1 - - - - - - - - - Cre11.g467778 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - - - - g11708.t1 - PTHR10285 - 2.4.2.9 K00761 - AT3G53900.2 PYRR,UPP uracil phosphoribosyltransferase Cre12.g529850 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n upregulated - - - g13045.t1 - - - - - - - - - Cre14.g618950 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - - - - g14915.t1,Cre14.g618950.t1.1 - - - - - - - - - Cre08.g370050 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 11 - - g8672.t1 - - - - - - - - - Cre16.g677150 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - - - - g16572.t1 - PTHR23033 - - - - - - - Cre16.g689851 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 2 - - g16193.t2, g16193.t1 PF01822 - - - - - - - - Cre10.g419400 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 9 - - g10381.t1 - - - - - - - - - Cre02.g103900 MAPKKK11 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 17 Mitogen-Activated Protein Kinase Kinase Kinase - g2125.t1,MAPKKK11 PF07714 PTHR23257,PTHR23257:SF99 KOG0192 - - GO:0004672,GO:0006468 AT2G17700.1 - ACT-like protein tyrosine kinase family protein Cre01.g048450 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 17 - - g1076.t1 PF03448 - - - - - - - - Cre02.g087700 APX1 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C Y upregulated 8 Ascorbate peroxidase L-ascorbate peroxidase, possibly localized to plastid g1630.t1,Cre02.g087700.t1.1 PF00141 - - 1.11.1.11 K00434 GO:0004601,GO:0006979,GO:0020037,GO:0055114 AT4G08390.1 SAPX stromal ascorbate peroxidase Cre17.g706000 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 12 - - g17112.t1 - - KOG3815 - - - - - - Cre07.g321000 CYG14 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 17 Adenylate/guanylate cyclase Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g7421.t1 PF00211 PTHR11920:SF144,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre10.g459500 NGB1 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 15 Nucleolar GTP-binding protein Involved in the biogenesis of the 60S ribosomal subunit (By similarity); Probably nuclear; nucleolar; Belongs to the GTP1/OBG family; NOG subfamily. Previously annotated as NGB1 g11269.t1,NGB1 PF08155,PF06858 PTHR11702:SF4,PTHR11702 KOG1490 - K06943 GO:0005525 AT1G50920.1 - Nucleolar GTP-binding protein Cre04.g226001 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 M n - 10 - - g4940.t1,Cre04.g226000.t1.3 - - - - - - - - - Cre13.g565350 TTL11 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - - - - g13914.t1,Cre13.g565350.t1.1,TTL11 - - - - - - - - - Cre13.g567550 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 15 - - g13966.t2, g13966.t1 PF00069 PTHR24361,PTHR24361:SF25, PTHR24362,PTHR24362:SF138 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT3G44200.1 ATNEK6,IBO1,NEK6 NIMA (never in mitosis, gene A)-related 6 Cre12.g558650 EIF2BD,EIF2B - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 2 Eukaryotic translation initiation factor 2B subunit 4, eIF-2B delta subunit Eukaryotic translation initiation factor 2B subunit 4, eIF-2B delta subunit. Previously annotated as just EIF2B g13355.t1,EIF2B,EIF2BD PF01008 PTHR10233,PTHR10233:SF14 KOG1467 - K03680 GO:0044237 AT5G38640.1 - NagB/RpiA/CoA transferase-like superfamily protein Cre03.g207500 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - 15 - - g4159.t2, g4159.t1 - - - - - - - - - Cre01.g035150 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - - - - g793.t1 PF00642 - KOG1040 - - GO:0003676,GO:0008270 AT3G19360.1 - Zinc finger (CCCH-type) family protein Cre14.g632550 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - 13 - - g15241.t1,Cre14.g632550.t1.1 - - KOG3119 - - - - - - Cre13.g576760 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - 6 - - g14174.t1 - PTHR14154:SF1,PTHR14154 - - - - AT3G22840.1 ELIP,ELIP1 Chlorophyll A-B binding family protein Cre17.g711200 PGM16 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - 4 - - g17223.t1,Cre17.g711200.t1.1,PGM16 PF00702 PTHR18901 KOG2914 - - GO:0003824,GO:0008152 AT2G38740.1 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre03.g206550 CPLD2,PGP5 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 C Y - 6 Phosphoglycolate phosphatase/2-deoxyglucose-6-phosphate phosphatase. Phosphoglycolate phosphatase/2-deoxyglucose-6-phosphate phosphatase. Conserved expressed protein with hydrolase motif g4180.t1,Cre03.g206550.t1.1,PGP5 PF00702 PTHR18901 KOG2914 - - GO:0003824,GO:0008152 AT3G48420.1 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre09.g402602 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 15 - - g9211.t1 - - - - - - - - - Cre03.g184700 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 12 - - g3828.t2,Cre03.g184700.t1.1, g3828.t1 PF00656 - - - - GO:0004197,GO:0006508 AT1G79330.1 AMC6,ATMC5,ATMCP2B,MC5 metacaspase 5 Cre12.g518200 PDI1,DNJ3 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - 5 Protein disulfide isomerase Protein disulfide isomerase with thioredoxin fold. Previously annotated as DNJ3, but this is not correct g12780.t1,DNJ3,PDI1 PF10208,PF00085,PF00226 PTHR25040:SF160,PTHR25040 - - K09530 GO:0045454,GO:0031072 AT3G08970.1 ATERDJ3A,TMS1 DNAJ heat shock N-terminal domain-containing protein Cre01.g020050 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 M n - 11 - - g466.t1 - - KOG1003 - - - - - - Cre07.g350050 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 SP n - 9 - - g8144.t1 - - - - - - AT5G55370.1 - MBOAT (membrane bound O-acyl transferase) family protein Cre06.g285451 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - 9 - - g6635.t1,Cre06.g285450.t1.3 - - - - - - - - - Cre05.g232000 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 14 - - g5139.t1, g5139.t2 PF00226 PTHR24078 - - K09520 GO:0031072 AT1G80030.1 - Molecular chaperone Hsp40/DnaJ family protein Cre16.g675246 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O Y - - - - g16129.t1,Cre01.g063450.t1.1,Cre01.g063450.t1.2 PF00628,PF01426 PTHR12321 - - - GO:0005515,GO:0003677 AT4G22140.1 EBS PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein Cre16.g664801 RBL4 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 M Y - 9 - - g16048.t1,Cre16.g664800.t1.2,RBL4 PF01694 PTHR22936 - - - GO:0004252,GO:0006508,GO:0016021 AT5G25752.1 ATRBL11,RBL11 rhomboid-like protein 11 Cre03.g187500 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 16 - - g3884.t1,Cre03.g187500.t1.1 PF00782 PTHR23339,PTHR23339:SF36 - - - GO:0006470,GO:0008138 AT5G56610.1 - Phosphotyrosine protein phosphatases superfamily protein Cre12.g527500 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - - - - g12994.t1,Cre12.g527500.t1.1 PF00400,PF08513 PTHR22846:SF2,PTHR22846 KOG0273 - K04508 - AT5G67320.1 HOS15 WD-40 repeat family protein Cre14.g613750 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - 16 - - g14789.t1 PF00069 - - - - GO:0004672,GO:0005524,GO:0006468 AT5G35980.2 YAK1 yeast YAK1-related gene 1 Cre03.g156800 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - - - - g3201.t1,Cre03.g156800.t1.1 - - - - - - - - - Cre12.g508853 BPL2 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 3 - - g12377.t1,Cre12.g508800.t1.3,BPL2 - - - - - - AT1G79380.1 - Ca(2)-dependent phospholipid-binding protein (Copine) family Cre03.g158950 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - - - - g3254.t1 PF00076 PTHR22630 KOG0114 - K12833 GO:0003676 AT5G12190.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre13.g582250 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n downregulated 18 - - g14296.t1,Cre13.g582250.t1.1 PF03644 PTHR13246 - 3.2.1.96 K01227 GO:0005737,GO:0033925 AT3G11040.1 - Glycosyl hydrolase family 85 Cre02.g143650 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - - - - g2609.t1,Cre02.g143650.t1.1, g2609.t2 - - - - - - - - - Cre11.g467524 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n upregulated 2 - - g11454.t1,Cre18.g751500.t1.1 PF00293 PTHR11839:SF2,PTHR11839 - 3.6.1.45 K08077 GO:0016787 - - - Cre10.g454350 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 15 - - g11154.t1 - - - - - - - - - Cre03.g152400 EXN1 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 C n - 15 3\'-5\' exonuclease Conserved in plants and parasites g3102.t1,EXN1 PF01612 - - - - GO:0003676,GO:0005622,GO:0006139,GO:0008408 AT2G25910.2 - 3\'-5\' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein Cre02.g144252 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - - - - g2590.t1 PF07885 PTHR24567:SF22,PTHR24567 - - - - AT3G02850.1 SKOR STELAR K+ outward rectifier Cre08.g378500 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - 9 - - g8910.t1 - - - - - - - - - Cre12.g554750 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - 11 - - g13439.t1,Cre12.g554750.t1.1 PF00240 PTHR10666:SF54,PTHR10666 KOG4495 - - GO:0005515 AT5G57860.1 - Ubiquitin-like superfamily protein Cre03.g165801 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - - - - g3402.t1 PF00651 - - - - GO:0005515 - - - Cre12.g551800 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 8 - - g13506.t1,Cre12.g551800.t1.1 PF00293 - - - - GO:0016787 - - - Cre03.g189700 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - 14 - - g3929.t1,Cre03.g189700.t1.1 PF02622 - - - - - AT1G33780.1 - Protein of unknown function (DUF179) Cre13.g565321 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - - - - g13913.t1 PF00206,PF08328 PTHR11444:SF2,PTHR11444 - - - GO:0004018,GO:0006188 AT1G36280.1 - L-Aspartase-like family protein Cre12.g517250 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - - - - g12756.t1 - - - - - - - - - Cre11.g467687 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n downregulated 9 - - g11617.t1,Cre18.g744500.t1.1,Cre18.g744500.t1.2 PF05368 PTHR14194:SF16,PTHR14194 - - - - - - - Cre09.g401900 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - 3 - - g9226.t1,Cre09.g401900.t1.1 - - - - - - - - - Cre07.g355050 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 14 - - g8257.t3, g8257.t2, g8257.t1,Cre07.g355050.t1.1 - - - - - - - - - Cre14.g629429 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - 5 - - g15159.t1,Cre14.g629429.t1.1 - - - - - - - - - Cre10.g452076 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - - - - g11105.t1 - PTHR23139,PTHR23139:SF22 - - - - - - - Cre07.g338100 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - - - - g7866.t1,Cre07.g338100.t1.1 - - - - - - - - - Cre08.g377900 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - - - - g8897.t1,Cre08.g377900.t1.1 PF05869 - - - - GO:0003677,GO:0009007,GO:0032775 - - - Cre16.g687750 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - 17 - - g16333.t1,Cre16.g687750.t1.1 PF05686 PTHR12203,PTHR12203:SF16 - - - - - - - Cre13.g568350 BLZ18 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 5 - - g13986.t1,BLZ18 - - - - - - - - - Cre13.g567950 AGP1,STA1 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - 6 ADP-glucose pyrophosphorylase large subunit 1 ADP-glucose pyrophosphorylase large subunit 1; regulatory subunit catalyzes the formation of the glucosyl nucleotide from ATP and glucose-1-phosphate; contains nucleotidyl transferase domain, which is found in a wide range of enzymes which transfer nucleo g13975.t1,Cre13.g567950.t1.1,AGP1 PF00483 PTHR22572,PTHR22572:SF10 KOG1322 2.7.7.27 K00975 GO:0009058,GO:0016779 AT1G27680.1 APL2 ADPGLC-PPase large subunit Cre17.g712250 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - - - - g17248.t1 - - - - - - - - - Cre07.g335250 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 15 - - g7806.t1,Cre07.g335250.t1.1 - - - - - - - - - Cre14.g626576 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 M n - 17 - - g15090.t1 - - - - - - - - - Cre05.g236150 PGM14 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 5 - - g5429.t1,PGM14 PF00702 PTHR18901 KOG2914 - - GO:0003824,GO:0008152 AT5G57440.1 GPP2,GS1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre16.g675250 LPL2 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 5 - - g16613.t1,LPL2 PF03099 PTHR10993,PTHR10993:SF0 KOG0325 2.3.1.181 K03801 GO:0003824,GO:0006464,GO:0005737,GO:0009107,GO:0016415 AT1G47578.1 - Biotin/lipoate A/B protein ligase family Cre12.g558550 CPLD60 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C Y upregulated 4 - - g13357.t1,Cre12.g558550.t1.1 PF00561 PTHR10992,PTHR10992:SF20 KOG1454 - - - AT5G19850.1 - alpha/beta-Hydrolases superfamily protein Cre12.g561150 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - 11 - - g13294.t2, g13294.t1 - PTHR24365 - - - - AT1G48540.1 - Outer arm dynein light chain 1 protein Cre11.g467750 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 M n - 11 - - g11735.t1 - - - - - - - - - Cre03.g193150 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - - - - g3996.t1,Cre03.g193150.t1.1 PF06658 PTHR13507 - - - - AT2G15270.1 - - Cre13.g569651 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 6 - - g14016.t1 - - - - - - - - - Cre02.g091850 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 8 - - g1720.t1,Cre02.g091850.t1.1 PF00378 PTHR11941 KOG1679 4.2.1.18 K05607 GO:0003824,GO:0008152 AT4G16800.1 - ATP-dependent caseinolytic (Clp) protease/crotonase family protein Cre16.g668550 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - 15 - - g16264.t1,Cre16.g668550.t1.1 PF04366,PF01363 PTHR15629,PTHR15629:SF2 KOG1843 - - GO:0046872 AT3G43230.1 - RING/FYVE/PHD-type zinc finger family protein Cre19.g750397 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 6 - - g18125.t1,Cre33.g782950.t1.1 PF01471 - - - - GO:0008152 AT4G13670.1 PTAC5 plastid transcriptionally active 5 Cre01.g007100 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - - - - g186.t1 - - - - - - - - - Cre04.g211650 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - 14 - - g4746.t1,Cre04.g211650.t1.1, g4746.t2 - - - - - - - - - Cre02.g112266 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 C n - 15 - - g2311.t1,Cre02.g112266.t1.1 - - - - - - - - - Cre13.g570500 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 12 - - g14033.t1 - PTHR19959 - - - - - - - Cre12.g542450 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - 7 - - g13723.t1,Cre12.g542450.t1.1 - PTHR10887:SF17,PTHR10887 KOG1804 - - - AT1G05460.1 SDE3 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre03.g155950 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - - - - g3182.t1,Cre03.g155950.t1.1 - - - - - - - - - Cre14.g614550 CLR7,MDB1,OPR62 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 3 - - g14807.t1,CLR7,OPR62 - PTHR21228 - - - - - - - Cre11.g467694 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - - - - g11625.t1, g11625.t2 - - - - - - - - - Cre13.g563600 UBQ7 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 10 Ubiquitin-fusion protein Contains a ubiquitin domain near n-terminus, and a C-terminal domain with no database homology g13868.t1,UBQ7 PF00240 PTHR10666 KOG0003 - - GO:0005515 AT4G05320.2 UBQ10 polyubiquitin 10 Cre07.g357400 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - - - - g8310.t1 PF00226 PTHR24078 - - - GO:0031072 AT1G59725.1 - DNAJ heat shock family protein Cre02.g096700 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n downregulated 18 - - g1964.t1 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 AT3G43700.1 ATBPM6,BPM6 BTB-POZ and MATH domain 6 Cre14.g619450 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n downregulated 10 - - g14927.t1,Cre14.g619450.t1.1 - - - - - - - - - Cre10.g422900 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n downregulated 15 - - g10463.t1 PF00069,PF07714 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT2G17700.1 - ACT-like protein tyrosine kinase family protein Cre14.g609850 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - 6 - - g14700.t1,Cre14.g609850.t1.1 - - - - - - - - - Cre13.g589650 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 8 - - g14465.t1,Cre13.g589650.t1.1 PF08424 PTHR13471 - - - - AT3G17712.1 - - Cre12.g548651 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 14 - - g13578.t1,Cre12.g548600.t1.3 - - - - - - AT1G34500.1 - MBOAT (membrane bound O-acyl transferase) family protein Cre05.g232600 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 11 - - g5122.t1 PF05548 - - - - - - - - Cre12.g532750 EEP8 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 17 - - g13107.t1,EEP8 PF06839,PF03372 PTHR22748 - 4.2.99.18 K10772 GO:0008270,GO:0004518,GO:0006281 AT4G36050.2 - endonuclease/exonuclease/phosphatase family protein Cre09.g415500 TCA1 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 3 Translation factor for chloroplast petA RNA Required for translation of the chloroplast petA RNA (see PMID: 11560891, PMID: 17494733). Characterized by Loiselay et al. 2008 [PMID: 18573878]. g10287.t1,TCA1 - - - - - - - - - Cre09.g390912 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - 11 - - g9681.t1,Cre02.g126250.t1.1 PF00400 - - - - - - - - Cre09.g393432 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 12 - - g9754.t1,Cre02.g129400.t1.1 - - - - - - - - - Cre16.g684700 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - - - - g16404.t1 PF10309 PTHR16291 - - - - - - - Cre15.g638400 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 C n - 11 - - g15444.t1,Cre15.g638400.t1.1 PF00582 - - - - GO:0006950 AT5G66090.1 - - Cre03.g170850 MMP19 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 SP n - 18 - - g3520.t1,MMP19 PF05548 - - - - - - - - Cre03.g166500 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 13 - - g3417.t1,Cre03.g166500.t1.1 - - - - - - - - - Cre01.g049750 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - - - - g1102.t1,Cre01.g049750.t1.1 PF04140 - - - - GO:0004671,GO:0006481,GO:0016021 AT5G59500.1 - protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases Cre06.g304913 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - - - - g7058.t1 PF01476 PTHR21666,PTHR21666:SF2 - - - GO:0016998 - - - Cre12.g513254 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 8 - - g12672.t1,Cre12.g513254.t1.1 PF07522 PTHR23240 - - - - AT2G45700.1 - sterile alpha motif (SAM) domain-containing protein Cre07.g349200 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n downregulated 12 - - g8125.t1,Cre07.g349200.t1.1 - - - - - - - - - Cre13.g573800 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - 2 - - g14106.t1,Cre13.g573800.t1.1 PF00156,PF00485 PTHR10285 KOG4203 2.7.1.48 K00876 GO:0009116,GO:0005524,GO:0008152,GO:0016301 AT5G40870.1 ATUK/UPRT1,UK/UPRT1,UKL1 uridine kinase/uracil phosphoribosyltransferase 1 Cre12.g526950 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - - - - g12983.t1 PF00400,PF04494 PTHR19879 KOG0263 - K03130 GO:0005634,GO:0006355,GO:0030528 AT5G25150.1 TAF5 TBP-associated factor 5 Cre02.g110750 LHCB7 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C Y upregulated - Chlorophyll a/b binding protein Putative light-harvesting protein; (LHCII type I CAB) (LHCP); formerly LHCBP1 in v3; Minagawa calls this LHCB7 g2273.t1,Cre02.g110750.t1.1 PF00504 PTHR21649 - - K14172 GO:0009765,GO:0016020 AT1G76570.1 - Chlorophyll A-B binding family protein Cre01.g027764 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - - - - g635.t1,Cre01.g027764.t1.1 PF01554 PTHR11206:SF38,PTHR11206 KOG1347 - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT5G52450.1 - MATE efflux family protein Cre06.g300450 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - 7 - - g6952.t1 PF00004 PTHR20953 - - - GO:0005524 AT1G73170.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre06.g270200 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 12 - - g6062.t1 PF00387,PF00168,PF00388 PTHR10336 - 3.1.4.11 K05857 GO:0004435,GO:0006629,GO:0007165,GO:0035556,GO:0005515,GO:0004629 AT2G40116.1 - Phosphoinositide-specific phospholipase C family protein Cre06.g262900 PFK1 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - 11 Phosphofructokinase Putative phosphofructokinase family protein (EC 2.7.1.11 or 2.7.1.90), based on similarity to rice (GenBank BAD29254) and Arabidopsis (GenBank AAM20228) genes; possible plastid-targeted splice variant of PFK1b g5905.t1,Cre06.g262900.t1.1 PF00365 PTHR13697 - 2.7.1.11 K00850 GO:0003872,GO:0005945,GO:0006096 AT2G22480.1 PFK5 phosphofructokinase 5 Cre02.g098500 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 M n - 16 - - g2003.t1,Cre02.g098500.t1.1 PF04749 PTHR15907,PTHR15907:SF13 - - - - AT1G68610.1 PCR11 PLANT CADMIUM RESISTANCE 11 Cre08.g385400 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 10 - - g9068.t1, g9068.t2,Cre08.g385400.t1.1 PF00710 PTHR11707 - - - GO:0006520 - - - Cre03.g145267 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 15 - - g2927.t1,Cre01.g058750.t1.1,Cre01.g058750.t1.2 PF01979 PTHR11271,PTHR11271:SF6 KOG3968 3.5.4.3 K01487 GO:0016787,GO:0008270,GO:0008892 - - - Cre17.g720150 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n downregulated 9 - - g17429.t1 PF05548 - - - - - - - - Cre03.g154950 GST6 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - 11 - - g3159.t1,Cre03.g154950.t1.1,GST6 PF00043 PTHR11260,PTHR11260:SF67 KOG2903 - - - AT4G19880.1 - Glutathione S-transferase family protein Cre07.g339400 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 7 - - g7894.t1 - - - - - - - - - Cre06.g295826 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - 8 - - g6845.t1 PF04982 PTHR10900:SF22,PTHR10900 - - - - AT3G47980.1 - Integral membrane HPP family protein Cre01.g043750 BBS7 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - - Bardet-Biedl syndrome-7 associated protein Similar to Bardet-Biedl syndrome 7 g978.t1 - PTHR16074,PTHR16074:SF4 - - - - - - - Cre12.g506650 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - - - - g12436.t2,Cre12.g506650.t1.1, g12436.t1 PF07064 PTHR22746:SF4,PTHR22746 - - - - AT3G61480.1 - Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor Cre01.g002350 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - - - - g57.t1 PF00899 PTHR10953:SF29,PTHR10953 KOG2016 - K04532 GO:0003824 AT1G05180.1 AXR1 NAD(P)-binding Rossmann-fold superfamily protein Cre01.g037250 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 15 - - g835.t1,Cre01.g037250.t1.1 - - - - - - - - - Cre17.g722450 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - - - - g17476.t1 - - - - - - AT4G33630.1 EX1 Protein of unknown function (DUF3506) Cre13.g574650 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - 15 - - g14125.t1 PF00035 - - - - GO:0003725,GO:0005622 - - - Cre16.g693450 FAP40,ISG-C1 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - 10 Flagellar Associated Protein Flagella associated protein FAP40. Previously annotated as ISG-C1 but that was probably not correct as this model has now been split g15609.t1,ISG-C1 - - - - - - - - - Cre02.g141826 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 11 Mitogen-Activated Protein Kinase Kinase Kinase Putative mitogen-activated protein kinase kinase kinase. Previously annotated as PTK16 g2733.t1,Cre15.g646950.t1.1 PF00069 PTHR26392 - - - GO:0004672,GO:0005524,GO:0006468 AT2G02800.1 APK2B protein kinase 2B Cre09.g391150 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - 8 - - g9469.t1 PF05548 - - - - - - - - Cre07.g356980 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - 11 - - g8300.t1 - - - - - - - - - Cre05.g236600 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 10 - - g5442.t1 - - - - - - - - - Cre17.g707137 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 16 - - g17133.t1,Cre17.g707137.t1.1 - - - - - - - - - Cre01.g028200 DBP2,HEL6 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - 14 DEAD-box RNA helicase Homology to Saccharomyces cerevisiae Dbp2p: essential ATP-dependent RNA helicase of the DEAD-box protein family, involved in nonsense-mediated mRNA decay and rRNA processing. Previously annotated as DBP2 after the yeast protein, but there is no DBP1 in t g644.t1,DBP2,HEL6, g644.t2,DBP2,HEL6 PF00271,PF00270 PTHR24031:SF50,PTHR24031 KOG0331 3.6.4.13 K12823 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G55150.1 - DEA(D/H)-box RNA helicase family protein Cre16.g670050 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 O n - - - - g16229.t1,Cre16.g670050.t1.1 PF01237 PTHR10972,PTHR10972:SF45 - - - - AT3G09300.1 ORP3B OSBP(oxysterol binding protein)-related protein 3B Cre06.g305251 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 C n - 14 - - g7066.t1,Cre06.g305251.t1.1 PF00400 PTHR22847 KOG0286 - - - AT2G41500.1 EMB2776,LIS WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related Cre13.g574200 PAP2 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 C n - - Poly(A) polymerase Non-canonical Poly(A) polymerase which lacks the RNA binding domain. Homologue of yeast Trf4p and Trf5p. Adds a poly(A) tail to RNA species that will undergo exosome-mediated 3\'->5\' degradation. Plays a role in RNA surveillance for aberrant RNA species g14115.t1,PAP2 PF01909 PTHR23092 KOG1906 - - GO:0016779 AT5G53770.1 - Nucleotidyltransferase family protein Cre02.g089650 - 0 3 1.0 1.0 1 2 0.0880580397687 1.0 SP n downregulated 12 - - g1674.t1 - - KOG3454 - - - - - - Cre14.g609700 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - 18 - - g14697.t1 PF03351 - - - - - - - - Cre03.g166550 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 SP n - 10 - - g3418.t1 - - - - - - - - - Cre05.g236850 NAT14 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 M n - 7 - - g5448.t1,NAT14 PF00583 - - - - GO:0008080,GO:0008152 - - - Cre01.g041500 - 1 2 0.0942955001713 1.0 1 2 0.0880580397687 1.0 O n - 13 - - g929.t1 - - KOG2186 - - - - - - Cre16.g676533 - 2 15 0.103995174683 1.0 2 15 0.0922756294469 1.0 M n - 15 - - g16740.t1,Cre01.g066800.t1.1, g16740.t2,Cre01.g066800.t2.1 PF00207 PTHR13062:SF1,PTHR13062 - - - GO:0004866 - - - Cre10.g457331 - 2 15 0.103995174683 1.0 2 15 0.0922756294469 1.0 O n - 16 - - g11221.t1 - PTHR24761,PTHR24761:SF37 - - - - - - - Cre06.g256300 PPP20 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 M n - - - - g5759.t1,Cre06.g256300.t1.1,PPP20, g5759.t2,PPP20 PF07228 PTHR12320 KOG1379 - - GO:0003824 AT5G66720.2 - Protein phosphatase 2C family protein Cre09.g413800 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - 7 - - g10250.t1 - - - - - - - - - Cre02.g118450 DNJ28 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 SP n - 4 DnaJ-like protein DnaJ-like protein; contains N-terminal J-domain (pfam00226); weak homology to rice Q7XI55, which contains thioredoxin fold and is predicted to be ER-targeted g2458.t1 PF00226 PTHR24076 - - - GO:0031072 AT1G18700.1 - DNAJ heat shock N-terminal domain-containing protein Cre14.g631150 CEP14 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - 16 - - g15212.t2,CEP14, g15212.t1,CEP14 PF01822,PF00112,PF01476, PF01822,PF01476 PTHR12411:SF143,PTHR12411 - - - GO:0006508,GO:0008234,GO:0016998, GO:0008234,GO:0016998 - - - Cre10.g437201 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - - - - g10774.t1 PF07714 PTHR23257 - - - GO:0004672,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre17.g707400 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 C n - 16 - - g17139.t1,Cre17.g707400.t1.1 PF00013 PTHR10288,PTHR10288:SF53 KOG2190 - - GO:0003723 AT3G04610.1 FLK RNA-binding KH domain-containing protein Cre02.g091550 EZY18,PBF2 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 M n - 10 - - g1714.t1,Cre02.g091550.t1.1,EZY18,PBF2 PF08536 - - - - - AT2G02740.2 ATWHY3,PTAC11,WHY3 ssDNA-binding transcriptional regulator Cre07.g344350 TPP1 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 C n - 4 Chloroplast thylakoid processing peptidase Serine peptidase (S26 family); processes thylakoid-imported proteins during translocation, removing signal peptide; homologous to bacterial type I signal peptidases g8013.t1,Cre07.g344350.t1.1,TPP1 PF10502 PTHR12383,PTHR12383:SF1 KOG0171 3.4.21.89 K03100 - AT3G24590.1 PLSP1 plastidic type i signal peptidase 1 Cre03.g204200 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - - - - g4232.t1,Cre03.g204200.t1.1 - - - - - - - - - Cre16.g668850 MTA2 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 SP n - 15 Hydroxyproline-rich glycoprotein Hydroxyproline-rich glycoprotein, putative component of the zygote ECM; contains PPSPX repeats, described in PMID: 11258910. This gene is called A2 in some publications. The mRNA is gamete-specific; there is no protein localization data. A pseudogene copy g16258.t1,MTA2 - - - - - - - - - Cre12.g500850 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - - - - g12559.t1 - - - - - - - - - Cre12.g498750 LIPG2,LIP2 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 SP n downregulated 15 Triacylglycerol lipase Triacylglycerol lipase. Related to gastric ligase. Previously annotated as LIPG2 g12610.t1,LIP2,LIPG2 PF00561,PF04083 PTHR11005 KOG2624 - - GO:0006629 AT5G14180.1 MPL1 Myzus persicae-induced lipase 1 Cre06.g278160 PRL5 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 SP n - 4 Predicted extracellular protein Similar to pathogenesis-related protein 1, extracellular g6303.t1,Cre13.g596350.t1.1,Cre13.g596350.t1.2,PRL5 PF00188 PTHR10334,PTHR10334:SF7 - - - - AT4G31470.1 - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Cre15.g637282 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 M n - 8 - - g15370.t1 - - - - - - - - - Cre02.g086300 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - 17 - - g1599.t2, g1599.t1 - - - - - - - - - Cre10.g444750 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 M n - 10 - - g10935.t1 - - - - - - AT4G33380.1 - - Cre08.g361800 RPC31 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n upregulated 1 - - g8470.t1,Cre08.g361800.t1.1,RPC31 PF11705 - - - - - - - - Cre08.g374100 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 M n - - - - g8815.t1, g8815.t2 - - - - - - - - - Cre01.g055316 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 SP n - - - - g1220.t1,Cre01.g055314.t2.1, g1220.t2,Cre01.g055314.t1.2 - - - - - - - - - Cre06.g297400 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - 10 - - g6879.t1 PF08240,PF00107 PTHR11695 KOG1198 - - GO:0008270,GO:0016491,GO:0055114 AT1G23740.1 - Oxidoreductase, zinc-binding dehydrogenase family protein Cre10.g427750 KIN9-3 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 C n - 13 - - g10565.t1,Cre10.g427750.t1.1,KIN9-3 PF00225 PTHR24115,PTHR24115:SF182 - - - GO:0003777,GO:0005524,GO:0007018 AT1G21730.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre17.g746147 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 SP n - 16 - - g18039.t2, g18039.t1 - - - - - - - - - Cre12.g533800 CYN22 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - 8 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID:15047905]; cytosolic; similar to At2g38730 (AtCYP22) g13130.t1,Cre12.g533800.t1.1 PF00160 PTHR11071:SF58,PTHR11071 KOG0879 5.2.1.8 K09567 GO:0003755,GO:0006457 AT2G38730.1 - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Cre16.g674000 WDR2 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - - - - g16642.t1,Cre16.g674000.t1.1,WDR2 PF00400 PTHR19919 KOG0290 - K11805 - AT1G12910.1 ATAN11,LWD1 Transducin/WD40 repeat-like superfamily protein Cre11.g468368 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 M n - - - - g11756.t1 - - - - - - - - - Cre12.g493250 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - 9 - - g12085.t1,Cre12.g493250.t1.1 PF00069,PF00027 PTHR24352:SF109,PTHR24352 KOG0614 2.7.11.12 K07376 GO:0004672,GO:0005524,GO:0006468 AT2G20050.2 - protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases Cre14.g618900 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - - - - g14913.t1,Cre14.g618900.t1.1 PF07707,PF00651 PTHR24412:SF168,PTHR24412 - - K10444 GO:0005515 AT3G56230.1 - BTB/POZ domain-containing protein Cre01.g022450 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 M n - 14 - - g517.t1 PF07707 - - - - - - - - Cre07.g350500 TSV - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 M n upregulated 3 - - g8154.t1,Cre07.g350500.t1.1,TSV PF00133,PF08264,PF10458 PTHR11946,PTHR11946:SF5 KOG0432 6.1.1.9 K01873 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418,GO:0004832,GO:0006438 AT5G16715.1 EMB2247 ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases Cre13.g577700 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - - - - g14194.t1,Cre13.g577700.t1.1 - - - - - - - - - Cre14.g615850 EFH8 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - 6 - - g14838.t1,EFH8, g14838.t2,EFH8 - PTHR10891 KOG0027 - - - - - - Cre03.g161250 CYP748A1,CYP14 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - - Cytochrome P450, CYP197 superfamily Cytochrome P450, CYP197 superfamily, CYP197B family. Previously annotated as CYP748A1 g3304.t1,Cre03.g161250.t1.1,CYP14 PF00067 PTHR24301,PTHR24301:SF127 KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT4G37430.1 CYP81F1,CYP91A2 cytochrome P450, family 91, subfamily A, polypeptide 2 Cre01.g028950 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 SP n - 14 - - g660.t1,Cre01.g028950.t1.1 PF00581 - KOG1530 - - - - - - Cre09.g407550 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - 6 - - g10104.t1,Cre09.g407550.t1.1 PF02037 - - - - GO:0003676 - - - Cre09.g398500 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - 9 - - g9311.t1 - - - - - - - - - Cre12.g489200 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 SP n downregulated 13 - - g12201.t1 - PTHR10794 KOG1838 - - - AT3G50790.1 - esterase/lipase/thioesterase family protein Cre01.g008750 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 C n - - - - g220.t1,Cre01.g008750.t1.1 - - - - - - - - - Cre08.g358250 MCA1 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 C n upregulated 3 Maturation/stability factor for petA mRNA Required for stability of chloroplast petA transcript. Characterized by Loiselay et al. 2008 [PMID: 18573878] g8331.t1,Cre08.g358250.t1.1 PF01535 PTHR24015,PTHR24015:SF207 - - - - AT5G02860.1 - Pentatricopeptide repeat (PPR) superfamily protein Cre12.g529301 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - 9 - - g13032.t1,Cre12.g529300.t1.3 PF00501 PTHR24095,PTHR24095:SF54 - - - GO:0003824,GO:0008152 AT5G35930.1 - AMP-dependent synthetase and ligase family protein Cre07.g345800 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - 17 - - g8046.t1 - - - - - - AT5G24610.1 - - Cre03.g181950 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - 14 - - g3771.t1, g3771.t2 - - - - - - - - - Cre16.g670261 - 1 2 0.0942955001713 1.0 0 3 1.0 1.0 O n - 10 - - g16114.t1,Cre01.g062800.t1.1 PF11916,PF02985 PTHR16023 KOG0212 - - GO:0005515 AT2G01690.1 - ARM repeat superfamily protein Cre13.g580000 - 3 77 0.746055467713 1.0 5 75 0.0955447743649 1.0 SP n - 10 - - g14250.t1, g14250.t2 - - - - - - - - - Cre14.g624950 DHC10,IDA2,DYH1B - 2 16 0.114567516228 1.0 2 16 0.101796932729 1.0 SP n - 13 Flagellar inner arm dynein 1 heavy chain beta Flagellar inner arm dynein 1 heavy chain beta (DHC1-beta, dynein fb; one heavy chain of a two-headed type dynein; other chain is DHC1, dynein fa) (DHC10). Identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714]). g15055.t1,DHC10,DYH1B,IDA2 PF08385,PF08393,PF07728,PF03028 PTHR10676:SF130,PTHR10676 KOG3595 - K10408 GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 - - - Cre05.g233303 - 2 15 0.103995174683 1.0 1 16 0.406830136425 1.0 C n - 8 - - g5108.t1, g5108.t2 PF01501,PF06427 PTHR11226 KOG1879 2.4.1.- K11718 GO:0016757,GO:0003980,GO:0006486 AT1G71220.2 EBS1,PSL2,UGGT UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups Cre09.g392750 - 2 15 0.103995174683 1.0 0 17 1.0 1.0 O n - 16 - - g9434.t1,Cre09.g392750.t1.1 PF01237 PTHR10972,PTHR10972:SF45 KOG2210 - - - AT5G59420.1 ORP3C OSBP(oxysterol binding protein)-related protein 3C Cre03.g208497 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - - - - g4443.t1,Cre19.g755300.t1.1 - - - - - - - - - Cre02.g088400 DEG1,DEG1A - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n upregulated 7 DegP-type protease (HtrA), similar to DegP protease; serine protease, trypsin family, DegP type (HtrA) (protease Do) most similar to At3g27925 (DegP1) and to degP5, localized in thylakoid membrane, lumen side [PMID: 15137941]; probably results from a recent duplication of D g1646.t2,DEG1A, g1646.t1,Cre02.g088400.t1.1,DEG1A PF00089 PTHR22939:SF21,PTHR22939 KOG1320 - - GO:0004252,GO:0006508 AT3G27925.1 Deg1,DEGP1 DegP protease 1 Cre13.g592200 GSN1 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n downregulated 10 Glutamate synthase, NADH-dependent NADH-dependent glutamate synthase (EC 1.4.1.14); NADH-dependent glutamine-2-oxoglutarate aminotransferase (NADH-GOGAT); plastid targeting predicted by Target-P g14518.t1,Cre13.g592200.t1.1,GSN1 PF07992,PF01645,PF04898,PF01493,PF00310 PTHR11938:SF1,PTHR11938 KOG0399 1.4.1.13,1.4.1.14 K00264 GO:0006537,GO:0015930,GO:0006807,GO:0055114,GO:0008152,GO:0016491 AT5G53460.1 GLT1 NADH-dependent glutamate synthase 1 Cre03.g197250 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - 11 - - g4085.t1 - - - - - - AT5G48340.2 - - Cre02.g145700 AOT1 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - 13 Amino acid transporter Belongs to AAAP family of amino acid/auxin permeases; most similar to plant relatives; linked to closely related AOT2 g2548.t1,Cre02.g145700.t1.1,AOT1 PF01490 PTHR22950 KOG1305 - - - AT3G30390.1 - Transmembrane amino acid transporter family protein Cre01.g009731 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 M n - 10 - - g246.t1,Cre01.g009731.t1.1 - - - - - - - - - Cre08.g383500 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 17 - - g9028.t1 - - - - - - - - - Cre01.g004651 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 12 - - g113.t1,Cre01.g004650.t1.2 PF00570 PTHR13710:SF17,PTHR13710 - - - GO:0003676,GO:0005622,GO:0006310,GO:0008026 - - - Cre17.g718050 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 9 - - g17378.t1,Cre17.g718050.t1.1 - - - - - - - - - Cre09.g398250 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 15 - - g9316.t1 - - - - - - - - - Cre02.g096350 DAO1 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - 8 - - g1956.t1,DAO1 PF01266 PTHR11530 KOG3923 1.4.3.3 K00273 GO:0016491 - - - Cre10.g420561 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - - - - g10409.t1,Cre10.g420561.t1.1 - - - - - - - - - Cre12.g543302 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - - - - g13705.t1,Cre12.g543250.t1.3 PF07714 PTHR26392:SF142,PTHR26392 - - - GO:0004672,GO:0006468 AT4G31170.1 - Protein kinase superfamily protein Cre04.g216050 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n - 14 - - g4649.t1 PF00560 PTHR24420,PTHR24420:SF494 KOG0472 - - GO:0005515 AT4G20140.1 GSO1 Leucine-rich repeat transmembrane protein kinase Cre12.g552150 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - - - - g13495.t1 PF01590,PF07714 PTHR23257:SF139,PTHR23257 KOG0192 - - GO:0005515,GO:0004672,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre03.g213201 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - - - - g4487.t1,Cre19.g757200.t1.1 - - - - - - - - - Cre02.g095130 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n - 17 - - g1903.t1,Cre11.g473700.t1.1 PF02469 - - - - - - - - Cre09.g389500 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 14 - - g9507.t1, g9507.t2 - - - - - - - - - Cre01.g034250 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 SP n - 2 - - g772.t1 - - - - - - - - - Cre09.g406432 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - 14 - - g10076.t2, g10076.t3, g10076.t1 PF07645 PTHR24838,PTHR24838:SF447 - - K08023 - - - - Cre09.g405500 MLDP1,MLD1 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 16 - - g10055.t1,MLD1 - - - - - - - - - Cre12.g495950 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 9 - - g12140.t1 - - - - - - - - - Cre06.g285001 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 16 - - g6626.t1,Cre06.g285000.t1.3 PF03417 - - - - GO:0042318 - - - Cre02.g101800 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - 4 - - g2078.t1 PF00472 PTHR11075,PTHR11075:SF12 KOG3429 - - GO:0003747,GO:0006415 AT1G62850.2 - Class I peptide chain release factor Cre17.g710800 NFU3,NIFU3 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C Y - 11 Iron-sulfur cluster assembly protein Pfam01106, NifU-like domain; contains a C-terminal NifU domain (involved in biogenesis of FeS clusters). Previously annotated as NIFU3 g17212.t2,Cre17.g710800.t1.1,NIFU3, g17212.t1,NIFU3 PF01106 PTHR11178 - - - GO:0005506,GO:0016226,GO:0051536 AT4G01940.1 AtCNFU1,NFU1 NFU domain protein 1 Cre17.g737350 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - - - - g17834.t1 - PTHR26393,PTHR26393:SF466 - - - - AT4G20940.1 - Leucine-rich receptor-like protein kinase family protein Cre02.g104100 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n downregulated 10 - - g2129.t1,Cre02.g104100.t1.1 - - - - - - AT4G13400.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre12.g556650 APC4 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 8 Anaphase promoting complex subunit 4 Subunit of anaphase promoting complex g13399.t1,Cre12.g556650.t1.1 - PTHR13260 - - K03351 - AT4G21530.1 - Transducin/WD40 repeat-like superfamily protein Cre16.g683550 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n upregulated 5 - - g16431.t1,Cre16.g683550.t1.1 PF00667,PF00175,PF00258 PTHR19384,PTHR19384:SF49 KOG1158 - - GO:0016491,GO:0055114,GO:0010181 AT4G24520.2 AR1,ATR1 P450 reductase 1 Cre14.g619000 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - 16 - - g14917.t1,Cre14.g619000.t1.1 - - - - - - - - - Cre09.g394473 LCI9 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n upregulated 5 Low-CO2-inducible protein Low-CO2 inducible protein, containing starch-binding domain of CBM_20 (pfam00686) found in glycoside hydrolases. Because Chlamydomonas cells develop pyrenoids under low-CO2 conditions, which are surrounded by a typical starch sheath, Lci9 may function in g9783.t1,Cre02.g130700.t1.1,LCI9 PF00686 - - - - GO:0003824,GO:0005975 AT5G01260.2 - Carbohydrate-binding-like fold Cre09.g402182 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 8 - - g10011.t1 - - - - - - - - - Cre03.g153150 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 M n - 17 - - g3119.t1,Cre03.g153150.t1.1 PF00069 PTHR24347 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT4G09570.1 ATCPK4,CPK4 calcium-dependent protein kinase 4 Cre03.g155650 CLC1 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - 10 Clathrin light chain Expressed Protein. Clathrin light chain, vesicle coat protein. g3175.t1,Cre03.g155650.t1.1,CLC1 PF01086 PTHR10639,PTHR10639:SF0 KOG4031 - - GO:0005198,GO:0006886,GO:0016192,GO:0030130,GO:0030132 - - - Cre08.g384355 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M Y - 15 - - g9046.t1 - - - - - - AT1G80770.1 PDE318 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre17.g722350 RABL2A - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 10 Small Rab-related GTPase Expressed Protein. Distantly similar to a class of Rab-like proteins from mammals. Previously annotated as RABL2A g17474.t1,Cre17.g722350.t1.1,RABL2A PF00071 PTHR24073,PTHR24073:SF134 KOG0087 - K07932 - AT1G02130.1 ARA-5,ARA5,ATRAB1B,ATRABD2A,RA-5,RABD2A RAS 5 Cre06.g278163 ARG9 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n upregulated 2 Acetylornithine aminotransferase Acetylornithine aminotransferase. Identification of Chlamydomonas ARG9 as acetylornithine aminotransferase: Loppes, R. and Heindricks, R. (1986) Arch. Microbiol. 143:348-352. Plastid resident N-acetyl ornithine aminotransferase [PMID: 19617392] g6306.t1,Cre13.g596500.t1.1,Cre13.g596500.t1.2,ARG9 PF00202 PTHR11986,PTHR11986:SF19 KOG1401 2.6.1.11 K00818 GO:0008483,GO:0030170,GO:0006525 AT1G80600.1 WIN1 HOPW1-1-interacting 1 Cre03.g199850 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - - - - g4330.t1,Cre03.g199850.t1.1 - - - - - - - - - Cre11.g478800 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 7 - - g11886.t1,Cre11.g478800.t1.1 - - - - - - - - - Cre09.g406600 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n - - - - g10080.t1 - - - - - - - - - Cre13.g585000 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n - 7 - - g14359.t3, g14359.t2, g14359.t1,Cre13.g585000.t1.1 - - - - - - - - - Cre11.g467683 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 SP n - - - - g11613.t1,Cre18.g744700.t1.1 PF05548 - - - - - - - - Cre11.g482750 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n upregulated 5 - - g11985.t2,Cre11.g482750.t1.1, g11985.t1 - - - - - - - - - Cre08.g373100 CYP97C3,CYP25 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 C n - 4 Cytochrome P450, CYP97 superfamily; carotenoid hydroxylase Cytochrome P450, CYP97 superfamily. CYP97A3 of Arabidopsis is a carotenoid beta-ring hydroxylase [PMID: 16492736]. CYP97C1 of Arabidopsis (LUT1) is a carotenoid epsilon-ring hydroxylase [PMID: 14709673]. Previously annotated as CYP97C3 g8737.t1,CYP25 PF00067 PTHR24290,PTHR24290:SF151 KOG0157 - K09837 GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT3G53130.1 CYP97C1,LUT1 Cytochrome P450 superfamily protein Cre17.g728150 YKT6 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n upregulated 2 Endosomal R-SNARE protein, Yky6-family (R.II) Endosomal R-SNARE protein, Yky6-family (R.II). Expressed Protein. Class R.II SNARE, involved in Golgi trafficking (PMID: 17596510). Previously annotated as YKT6 g17601.t1,Cre17.g728150.t1.1,YKT6 PF00957 PTHR21136,PTHR21136:SF5 KOG0861 - K08516 GO:0016021,GO:0016192 AT5G58060.1 ATGP1,ATYKT61,YKT61 SNARE-like superfamily protein Cre10.g432150 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 7 - - g10665.t1,Cre10.g432150.t1.1 PF00069 PTHR24055,PTHR24055:SF169 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT1G71530.1 - Protein kinase superfamily protein Cre09.g399550 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 C n - 16 - - g9284.t1,Cre09.g399550.t1.1 PF07002,PF04564 PTHR10857 - - - GO:0000151,GO:0004842,GO:0016567 AT5G14420.1 RGLG2 RING domain ligase2 Cre06.g278190 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - 14 - - g6333.t1,Cre13.g597800.t1.1 - PTHR10351:SF26,PTHR10351 KOG0487 - - - - - - Cre06.g264400 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 O n - - - - g5940.t1 PF00249 PTHR13992,PTHR13992:SF8 - - K04650 - AT3G52250.1 - Duplicated homeodomain-like superfamily protein Cre06.g262800 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 O n upregulated 11 - - g5903.t1,Cre06.g262800.t1.1 PF00628,PF12422 PTHR16199,PTHR16199:SF1 - - K11492 GO:0005515 AT1G64960.1 - ARM repeat superfamily protein Cre12.g560250 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - 3 - - g13314.t1,Cre12.g560250.t1.1 PF04884 PTHR12770,PTHR12770:SF6 KOG4249 - - - AT5G49820.1 EMB1879,RUS6 Protein of unknown function, DUF647 Cre01.g036400 SDR3 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - - - - g818.t1,Cre01.g036400.t1.1,SDR3 PF00106 PTHR24322:SF42,PTHR24322 KOG1205 1.-.-.- K00540 GO:0008152,GO:0016491 AT3G03330.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre18.g748497 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 11 - - g18086.t1 PF02383 - - - - GO:0042578 - - - Cre01.g001950 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 SP n - - - - g45.t1,Cre01.g001950.t1.1 - - - - - - - - - Cre06.g296900 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n downregulated 8 - - g6865.t1,Cre06.g296900.t1.1 - - - - - - - - - Cre12.g535150 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - 16 - - g13164.t1 - - - - - - - - - Cre02.g091000 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - - - - g1701.t1,Cre02.g091000.t1.1 PF05346 PTHR13317:SF6,PTHR13317 KOG0487 - - - AT1G67960.1 - - Cre06.g298150 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - - - - g6896.t1,Cre06.g298150.t1.1 - - - - - - - - - Cre11.g467711 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - 2 - - g11641.t1,Cre18.g743500.t3.1, g11641.t2,Cre18.g743500.t1.1, g11641.t3,Cre18.g743500.t2.1 PF07517,PF01043,PF07516 - - - - GO:0005524,GO:0016020,GO:0017038 AT1G21650.2 - Preprotein translocase SecA family protein Cre13.g585450 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - 17 - - g14370.t1 - - - - - - - - - Cre13.g579100 APC1 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 10 Anaphase promoting complex subunit 1 (partial) Subunit 1 of Anaphase Promoting Complex. Cell cycle regulated E3 ubiquitin ligase. Gene model should be combined with downstream model, Au9.Cre13.g579050(-) g14227.t1,APC1 - PTHR12827 - - K03348 - AT5G05560.1 EMB2771 E3 ubiquitin ligase, putative Cre08.g359900 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 O n - 16 - - g8429.t1 PF00069 PTHR24349,PTHR24349:SF102 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre03.g158200 HDA2 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - - - - g3238.t1,Cre03.g158200.t1.1,HDA2 PF00850 PTHR10625,PTHR10625:SF9 - 3.5.1.98 K11418 - AT5G26040.2 HDA2 histone deacetylase 2 Cre10.g425200 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 O n - 9 - - g10510.t1 PF07156 PTHR15944 - - - GO:0016670,GO:0030328,GO:0055114 AT5G63910.1 FCLY farnesylcysteine lyase Cre13.g567400 PDE16 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n - 7 3\',5\'-cyclic-nucleotide phosphodiesterase Similar to calcium/calmodulin-dependent 3\',5\'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain 3\',5\'-cyclic-nucleotide phosphodiesterase g13962.t1,PDE16 PF00233,PF03924 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre10.g443100 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n upregulated 8 - - g10898.t1,Cre10.g443100.t1.1 - - - - - - - - - Cre03.g182550 PNO3 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - - - - g3783.t1,PNO3 PF07992 PTHR22912:SF31,PTHR22912 KOG2755 - - - - - - Cre03.g146067 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - 16 - - g2968.t1,Cre01.g060650.t1.1 PF00069,PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G26970.1 - Protein kinase superfamily protein Cre01.g071662 ACS1 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 O n - 11 Acetyl-CoA synthetase/ligase Acetyl-CoA synthetase (EC 6.2.1.1); Acetate-CoA ligase; Not in mitochondrion or plastid based on Target-P prediction (predicted as other with high reliability); similar to rice ACS (GenBank XP_466041) g1290.t1,Cre23.g765700.t1.1,Cre23.g765700.t1.2,ACS1 PF00501,PF11930 PTHR24095:SF42,PTHR24095 KOG1175 6.2.1.1 K01895 GO:0003824,GO:0008152 AT5G36880.2 ACS acetyl-CoA synthetase Cre02.g095111 VSR1 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n - 13 Vacuolar Sorting Receptor Expressed protein, similar to vacuolar sorting receptor from land plants g1884.t1,Cre11.g472850.t1.1,Cre11.g472850.t1.2,VSR1 PF02225 PTHR24032,PTHR24032:SF22 - - - - AT2G14720.1 BP80-2;1,MTV4,VSR2;1,VSR4 vacuolar sorting receptor 4 Cre02.g088650 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n - 9 - - g1651.t1,Cre02.g088650.t1.1 - - - - - - - - - Cre10.g436500 XPP - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 5 - - g10761.t1,Cre10.g436500.t1.1,XPP PF01975 - - 3.1.3.5 K03787 GO:0016787 AT4G14930.1 - Survival protein SurE-like phosphatase/nucleotidase Cre02.g076466 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n downregulated 12 - - g1373.t1,Cre02.g076450.t1.2 - - - - - - - - - Cre02.g099550 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n - 17 - - g2026.t1 PF00069 PTHR23257,PTHR23257:SF99 - - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre17.g729550 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 O n - - - - g17632.t1 PF01753 - - - - GO:0008270 - - - Cre04.g212401 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - 9 - - g4730.t1,Cre04.g212401.t1.1 PF00179 PTHR10044,PTHR10044:SF77 KOG0417 - - GO:0016881 AT1G53023.1 - Ubiquitin-conjugating enzyme family protein Cre10.g438883 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - 17 - - g10809.t2,Cre10.g438900.t1.3, g10809.t1,Cre10.g438900.t2.1 - - - - - - - - - Cre12.g529450 DRP5A - 0 4 1.0 1.0 1 3 0.115651459611 1.0 O n - 10 Dynamin-related GTPase Expressed Protein. Similar to Arabidopsis DRP5A, a dynamin-type GTPase involved in plastid division. Previously annotated as DRP5A g13036.t1,Cre12.g529450.t1.1, g13036.t4, g13036.t3, g13036.t2 PF00350 PTHR11566:SF62,PTHR11566 KOG0446 - - GO:0003924,GO:0005525 AT1G53140.1 DRP5A Dynamin related protein 5A Cre04.g223250 LCIE - 0 4 1.0 1.0 1 3 0.115651459611 1.0 M n - 6 LCIB-like gene Gene homologous to limiting-CO2 inducible proteins LCIC, LCIB [PMID: 15235119] and to LCID [PMID 16777959]; part of the CAH1/2 cluster of inversely repeated CO2 responsive genes; LCIE and CCP1 are located in head-to-head orientation in the cluster. The i g4871.t1,LCIE - - - - - - - - - Cre15.g639350 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 17 - - g15421.t1 - - - - - - - - - Cre06.g282450 PHX11 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - 1 - - g6569.t1,Cre06.g282450.t1.1,PHX11 PF03171 PTHR10869 - - - GO:0016491 AT2G17720.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre07.g340250 STK8,STPK8 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n - - Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK8 g7915.t1,STK8,STPK8 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre16.g694403 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 SP n - 7 - - g15585.t1 - - - - - - - - - Cre02.g120001 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n - - - - g2492.t1,Cre02.g120000.t1.3 - - - - - - - - - Cre15.g637850 OPR68 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - 6 - - g15417.t1 - - - - - - - - - Cre16.g657750 CCD2 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n upregulated 18 Carotenoid cleavage dioxygenase Related to carotenoid 9,10-9\',10\' cleavage dioxygenase which in land plants participates in abscisic acid biosynthesis; could play a similar role (PMID: 16327238) g15893.t1,Cre16.g657750.t1.1,CCD2 PF03055 PTHR10543 - - - - - - - Cre17.g723250 CPP1,CPE1 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 C Y - 5 Chloroplast processing protease Metalloendopeptidase, M16 family, homologous to mitochondrial MPP; cleaves chloroplast transit peptide after import, probably in a two-step reaction (PMID: 12888578); the extended cTP of CPE must be cleaved to activate the enzyme. Previously annotated as g17495.t1,Cre17.g723250.t1.1,CPP1 PF00675,PF05193 PTHR11851,PTHR11851:SF34 - - - GO:0004222,GO:0006508,GO:0008270 AT5G42390.1 - Insulinase (Peptidase family M16) family protein Cre04.g212150 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n downregulated 17 - - g4736.t1 - - - - - - - - - Cre06.g272300 CPLD57 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C Y - 11 - - g6109.t1,Cre06.g272300.t1.1 - - - - - - AT5G62840.1 - Phosphoglycerate mutase family protein Cre17.g707700 NRAMP1,NRM1 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - - Manganese/metal transporter, NRAMP homolog Manganese/metal transport protein mntH, natural resistance associated macrophage protein; related to yeast NRAMP ScSMF1-3, see PMID: 15710683. Previously annotated as NRAMP1 g17145.t1,Cre17.g707700.t1.1,NRM1 PF01566 PTHR11706,PTHR11706:SF13 KOG1291 - - GO:0005215,GO:0006810,GO:0016020 AT1G15960.1 ATNRAMP6,NRAMP6 NRAMP metal ion transporter 6 Cre01.g014700 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - 12 - - g356.t1,Cre01.g014700.t1.1 - - - - - - - - - Cre13.g584600 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 O n - 8 - - g14349.t1 - - - - - - - - - Cre07.g342550 SMM28 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 M n - 8 - - g7934.t1,SMM28 PF08241 PTHR10108,PTHR10108:SF8 - - - GO:0008152,GO:0008168 AT1G69526.2 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre07.g337650 PDC1 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - 5 Mitochondrial pyruvate dehydrogenase complex, E1 component, alpha subunit Alpha subunit of the E1 component of the mitochondrial pyruvate dehydrogenase complex (mtPDC), that catalyzes the oxidative decarboxylation of pyruvate, yielding acetyl-CoA and NADH to support the Krebs cycle and oxidative phosphorylation g7854.t1,Cre07.g337650.t1.1,PDC1 PF00676 PTHR11516,PTHR11516:SF4 KOG0225 1.2.4.1 K00161 GO:0008152,GO:0016624 AT1G24180.1 IAR4 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein Cre05.g234600 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 SP n - 16 - - g5354.t1 - - - - - - - - - Cre12.g508500 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n - 13 - - g12385.t1,Cre12.g508500.t1.1 PF07687,PF01546 PTHR11014:SF9,PTHR11014 KOG2275 3.4.17.- K13049 GO:0016787,GO:0008152 AT4G38220.1 - Peptidase M20/M25/M40 family protein Cre09.g410000 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 16 - - g10158.t1 PF02586 PTHR13604 KOG2618 - - - AT2G26470.1 - - Cre10.g424100 IPY1 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - 6 Inorganic pyrophosphatase Inorganic pyrophosphatase, identical to GI:14571671=CAC42762 (ppaI); probably chloroplastic (by homology to At5g09650) g10487.t1,Cre10.g424100.t1.1,IPY1 PF00719 PTHR10286,PTHR10286:SF0 KOG1626 3.6.1.1 K01507 GO:0000287,GO:0004427,GO:0005737,GO:0006796 AT5G09650.1 AtPPa6,PPa6 pyrophosphorylase 6 Cre01.g018075 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O Y - 14 - - g426.t1 - - - - - - - - - Cre09.g401923 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 O n - 12 - - g10004.t1,Cre02.g139700.t1.1,Cre02.g139700.t1.2 - - - - - - - - - Cre09.g410950 NIT1 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - - Nitrate reductase Nitrate reductase (1.6.6.3), converts nitrate to nitrite, the first step in nitrate assimilation; this cytosolic enzyme contains a molybdopterin (MoCo) binding domain, a dimerization domain, a cytochrome B5, a FAD-binding and a NAD-binding domain [PMID: 2 g10178.t1,Cre09.g410950.t1.1 PF03404,PF00175,PF00174,PF00173,PF00970 PTHR19370:SF5,PTHR19370 KOG0535 1.7.1.1 K00360 GO:0016491,GO:0030151,GO:0055114,GO:0009055,GO:0020037 AT1G37130.1 ATNR2,B29,CHL3,NIA2,NIA2-1,NR,NR2 nitrate reductase 2 Cre17.g699600 SEBP2,SBP2 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n - 2 Sugar bisphosphatase Shows similarity to both fructose 1,6-bisphosphatase (FBPase) and sedoheptulose 1,7-bisphosphatase (SBPase); based on probable cytosolic localization, fructose appears as a more likely substrate, and the enzyme would participate in cytosolic glyconeogenes g16966.t1,Cre17.g699600.t1.1,SBP2,SEBP2 PF00316 PTHR11556,PTHR11556:SF2 KOG1458 - - GO:0005975,GO:0042578 AT3G55800.1 SBPASE sedoheptulose-bisphosphatase Cre14.g631750 BLZ12 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 M n downregulated 12 - - g15225.t2,BLZ12, g15225.t1,BLZ12 PF00170 - - - - GO:0003700,GO:0006355,GO:0043565,GO:0046983 - - - Cre17.g733350 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 SP n - 15 - - g17724.t1 - - - - - - - - - Cre16.g675300 MFT9,PHT8 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - 4 Sodium-dependent phosphate transporter, major facilitator superfamily Na+-dependent inorganic phosphate cotransporter. Previously annotated as MFT9 g16612.t1,MFT9,PHT8 PF07690 PTHR11662:SF23,PTHR11662 KOG2532 - - GO:0016021,GO:0055085 AT4G00370.1 ANTR2,PHT4;4 Major facilitator superfamily protein Cre06.g282250 NAT18 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 3 - - g6564.t1,NAT18 PF00583 - - - - GO:0008080,GO:0008152 - - - Cre13.g571200 HIK - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 17 - - g14047.t1,HIK PF00512,PF00072,PF02518,PF00989 PTHR24423 - 2.7.13.- K14509 GO:0000156,GO:0000160,GO:0006355,GO:0000155,GO:0007165,GO:0016020,GO:0005524 AT1G27320.1 AHK3,HK3 histidine kinase 3 Cre02.g098900 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - 13 - - g2011.t1 - - - - - - - - - Cre13.g587376 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 5 - - g14410.t1 - - - - - - - - - Cre01.g013801 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C Y - - - - g338.t1,Cre01.g013801.t1.1 - - - - K09834 - AT4G32770.1 ATSDX1,VTE1 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) Cre17.g720450 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 3 - - g17437.t1 - - - - - - - - - Cre06.g293800 ARS16 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 C n - - - - g6803.t1,ARS16 PF00884 PTHR10342:SF2,PTHR10342 - - - GO:0008152,GO:0008484 - - - Cre17.g696300 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 C n upregulated 2 - - g16890.t1 - PTHR22938 - - - - AT3G62240.1 - RING/U-box superfamily protein Cre24.g755997 PHC18,FAP150 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 SP n - 15 Cell wall protein pherophorin-C18 Pherophorin-C18 (PHC18) [PMID: 16367971]; partial sequence similar to extracellular matrix protein (cell wall protein) pherophorin-C5 [Genbank entry DQ196111], which belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxy g18268.t1,Cre05.g231850.t1.1,PHC18 PF12499 - - - - - - - - Cre03.g145347 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 C n - 2 - - g2932.t1,Cre01.g058950.t1.1 - - - - - - - - - Cre02.g118250 SWB1 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - - SWIB domain-containing protein Contains two SWIB domains, conserved in yeast and mammals, present in ATP-dependent chromatin-remodelling proteins that facilitate transcription activation. Similar to Arabidopsis SWIB complex BAF60b domain-containing protein encoded by F13F21.4. g2454.t1,SWB1 PF02201 PTHR13844 - - - GO:0005515 AT1G49520.1 - SWIB complex BAF60b domain-containing protein Cre02.g110200 THO1 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n downregulated 15 Oligoendopeptidase Belongs to M3 family of metalloproteases, like thimet oligopeptidase; most similar to eubacterial homologues; possibly organelle-targetted. Previously annotated as THO1 but this conflicts with series for Tho complex subunits g2261.t1,THO1 PF01432 - - - - GO:0004222,GO:0006508 - - - Cre11.g481115 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 C n - - - - g11945.t1 - - - - - - AT4G12240.1 - zinc finger (C2H2 type) family protein Cre09.g399701 - 0 4 1.0 1.0 1 3 0.115651459611 1.0 O n downregulated 14 - - g9926.t1,Cre02.g137000.t1.1 - - - - - - - - - Cre10.g429601 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 O n - 2 - - g10612.t1 PF01026 PTHR10060,PTHR10060:SF1 KOG3020 - - GO:0016888 AT3G03500.1 - TatD related DNase Cre02.g118700 - 1 3 0.123707141532 1.0 1 3 0.115651459611 1.0 M n - - - - g2463.t1 - - - - - - - - - Cre17.g728700 - 3 34 0.118014874483 1.0 2 35 0.308781999073 1.0 C n - - - - g17612.t1 PF00023,PF00069 PTHR26266,PTHR26266:SF144 KOG0198 - - GO:0005515,GO:0004672,GO:0005524,GO:0006468 AT1G54960.1 ANP2,MAPKKK2,NP2 NPK1-related protein kinase 2 Cre01.g021950 - 1 19 0.483236193898 1.0 2 18 0.12157957027 1.0 M n - 13 - - g507.t1 PF08393 PTHR10676,PTHR10676:SF136 - - - - - - - Cre14.g627917 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - - - - g15127.t2, g15127.t1 - PTHR11487 - - - GO:0009058 - - - Cre02.g103000 FKM3 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 SP n - 10 - - g2104.t1,Cre02.g103000.t1.1,FKM3 - - - - - - AT2G26680.1 - - Cre03.g199550 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - - - - g4337.t1,Cre03.g199550.t1.1 PF00035 - - - - GO:0003725,GO:0005622 - - - Cre10.g431750 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 SP n - 16 - - g10657.t1 - - - - - - - - - Cre06.g277500 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - - - - g6219.t1,Cre06.g277500.t1.1 - - - - - - - - - Cre12.g483750 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 13 - - g12008.t1,Cre12.g483750.t1.1 - - - - - - - - - Cre10.g462450 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - - - - g11336.t2, g11336.t1,Cre10.g462450.t1.1 - - - - - - - - - Cre01.g012950 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - - - - g319.t1, g319.t2 PF00069,PF07714 PTHR23257,PTHR23257:SF277 - - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre09.g387600 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 11 - - g9552.t1,Cre09.g387600.t1.1 - - KOG2991 - - - - - - Cre14.g632860 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 M n - - - - g15259.t1,Cre14.g632860.t1.1 PF00069,PF07714 PTHR23257 KOG1187 - - GO:0004672,GO:0005524,GO:0006468 AT4G32000.2 - Protein kinase superfamily protein Cre17.g734250 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 16 - - g17753.t1 PF00069,PF07714 PTHR26392,PTHR26392:SF141 - - - GO:0004672,GO:0005524,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre12.g496900 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 C n - 11 - - g12647.t1 PF01844,PF03235 - - - - GO:0003676,GO:0004519 - - - Cre12.g504400 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 M n - - - - g12480.t1,Cre12.g504400.t1.1 - PTHR11614,PTHR11614:SF26 - - - - - - - Cre01.g044900 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 M n - 15 - - g1003.t2,Cre01.g044900.t1.1, g1003.t1 - - - - - - - - - Cre02.g109366 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 M n - 1 - - g2243.t1,Cre02.g109350.t1.3 PF00856 PTHR12197,PTHR12197:SF78 - - - GO:0005515 AT1G26760.1 ATXR1,SDG35 SET domain protein 35 Cre12.g512400 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 13 - - g12298.t1 PF00158 PTHR10919,PTHR10919:SF248 - - - GO:0005524,GO:0005622,GO:0006355,GO:0008134 - - - Cre03.g188950 SMM11 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 10 - - g3913.t1,Cre03.g188950.t1.1,SMM11 PF07942 PTHR12303 KOG2798 - - - AT2G32170.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre10.g418600 RLS3 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 C n - - RegA/RlsA-like protein Member of a family of proteins [PMID: 16720695, 16622701] related to Volvox carteri RegA, which is a putative transcription repressor [PMID: 9895312] containing a SAND domain (IPR000770 SAND; PF01342). g10363.t1,RLS3 PF01342 - - - - GO:0003677,GO:0005634 - - - Cre01.g041351 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 7 - - g925.t1,Cre01.g041350.t1.2 PF10238 PTHR15967 - - - - AT5G08320.1 - - Cre10.g441600 OPR48 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 C n - - - - g10866.t1 - - - - - - - - - Cre10.g418950 IAR1,KIN4-4,KIN10-2 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 C n - - Kinesin motor protein, kinesin-4/10 family Kinesin motor protein, kinesin-4/10 family, a combined family of standard kinesin-4 and kinesin-10 families (PMID: 16481395). Previously annotated as IAR1 for InvA related kinesin g10371.t1,IAR1,KIN10-2,KIN4-4, g10371.t2,IAR1,KIN10-2,KIN4-4 PF00225 PTHR24115:SF121,PTHR24115 KOG4280 - - GO:0003777,GO:0005524,GO:0007018 AT5G47820.1 FRA1 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre10.g428900 CGL72,RRM9 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O Y - 15 Putative ribosomal RNA methyltransferase Putative ribosomal RNA methyltransferase of the RrmJ/FtsJ family; conserved expressed protein with hemolysin motif and RNA methyltransferase motif. Previously annotated as CGL72 g10595.t1,RRM9 PF01728,PF01479 PTHR10436,PTHR10436:SF37 - - K06442 GO:0003676,GO:0008168,GO:0032259,GO:0003723 AT3G25470.1 - bacterial hemolysin-related Cre03.g177300 HAP4 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 SP n - 6 Haloperoxidase-like protein Contains a PAP2/haloperoxidase domain found in vanadium chloroperoxidases and related to phosphoesterases; closely related to stress-induced HPX1 and HPX2; all available ESTs are from stress I and S-starvation libraries g3665.t1,Cre03.g177300.t1.1,HAP4 PF01569 - - - - GO:0003824,GO:0016020 - - - Cre03.g191150 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 9 - - g3956.t1,Cre03.g191150.t1.1 PF00789 PTHR23322:SF6,PTHR23322 KOG1364 - - GO:0005515 AT1G14570.1 - UBX domain-containing protein Cre02.g074700 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 C n - 7 - - g1332.t1,Cre02.g074700.t1.1 PF04359 - - - - - AT1G27385.1 - - Cre03.g180000 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 C n downregulated 13 - - g3730.t1,Cre03.g180000.t1.1 - - - - - - - - - Cre03.g164450 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 C n - 9 - - g3371.t1 - - - - - - - - - Cre02.g118801 GTR - 1 3 0.123707141532 1.0 0 4 1.0 1.0 C n - - - - g2465.t1,Cre02.g118800.t1.2,GTR PF00534 PTHR12526,PTHR12526:SF26 - - - GO:0009058 AT3G10630.1 - UDP-Glycosyltransferase superfamily protein Cre14.g618500 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 C n - 10 - - g14899.t1 PF07707 PTHR24412:SF248,PTHR24412 - - - - - - - Cre02.g095116 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 11 - - g1889.t1,Cre11.g473050.t1.1 - - - - - - - - - Cre10.g434900 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 M n - 9 - - g10725.t1 PF01565,PF02913 PTHR11748,PTHR11748:SF6 KOG1231 1.1.2.4 K00102 GO:0016491,GO:0050660,GO:0003824 AT5G06580.1 - FAD-linked oxidases family protein Cre15.g635800 SMC1 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 9 Structural Maintenance of Chromosomes protein Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1); ChromDB CPC3404 g15337.t1,SMC1 PF02463 PTHR18937,PTHR18937:SF12 KOG0018 - K06636 GO:0005524,GO:0005694 AT3G54670.3 ATSMC1,SMC1,TTN8 Structural maintenance of chromosomes (SMC) family protein Cre09.g386734 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 SP n - 8 - - g9116.t1,Cre29.g778150.t1.1,Cre29.g778150.t1.2 PF11051 - - 2.4.1.- K05535 GO:0006486 - - - Cre16.g676050 ARP3 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 8 Actin-related protein Actin related protein 3. Part of the Arp2/3 complex. ChromoDB ARP3403 g16596.t1,ARP3 PF00022 PTHR11937:SF31,PTHR11937 KOG0678 - - GO:0003779,GO:0005524,GO:0005856,GO:0030833 AT1G13180.1 ARP3,ATARP3,DIS1 Actin-like ATPase superfamily protein Cre06.g278103 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 SP n upregulated 2 - - g6246.t1,Cre13.g593700.t1.1,Cre13.g593700.t1.2 PF01082,PF03712,PF03351 PTHR10157:SF15,PTHR10157 - - - GO:0004497,GO:0005507,GO:0004500,GO:0006584,GO:0055114 - - - Cre10.g441700 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 10 - - g10868.t1 - - - - - - - - - Cre06.g298100 SUI1,SUI1A - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 11 Translation initiation protein Translation initiation protein, initiation factor 1 (eIF-1). Previously annotated as SUI1A g6895.t1,Cre06.g298100.t1.1,SUI1,SUI1A PF01253 PTHR10388 KOG1770 - K03113 GO:0003743,GO:0006413 AT4G27130.1 - Translation initiation factor SUI1 family protein Cre12.g508450 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 SP n - 11 - - g12386.t1 PF00400,PF01753 - - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre15.g641050 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 M n - - - - g15455.t1,Cre15.g641050.t1.1 - - - - - - - - - Cre10.g434500 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 M n - 15 - - g10716.t1 PF00069 PTHR24349,PTHR24349:SF126 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT3G07980.1 MAP3KE2,MAPKKK6 mitogen-activated protein kinase kinase kinase 6 Cre07.g313400 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 M n - 13 - - g7254.t2, g7254.t1 - - - - - - - - - Cre16.g679164 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - - - - g16140.t1,Cre01.g063900.t1.1,Cre01.g063900.t1.2 PF10036 PTHR15924 - - - - - - - Cre12.g522650 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - - - - g12872.t1 PF04488 - - 2.4.1.232,2.4.1.- K05528,K05534 - - - - Cre07.g356700 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - - - - g8292.t1 - - - - - - - - - Cre05.g246553 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 4 - - g5205.t1,Cre05.g246450.t2.1, g5205.t2,Cre05.g246450.t1.3 - - - - - - - - - Cre01.g027400 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 M n - 11 - - g626.t1, g626.t2 - - - - - - - - - Cre03.g174800 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 O n - 14 - - g3610.t1,Cre03.g174800.t1.1 - - - - - - - - - Cre10.g439000 - 1 3 0.123707141532 1.0 0 4 1.0 1.0 C n upregulated 5 - - g10811.t1 PF00005,PF06472 PTHR11384:SF18,PTHR11384 KOG0060 - - GO:0005524,GO:0016887,GO:0006810,GO:0016020 AT1G54350.1 - ABC transporter family protein Cre03.g198200 BGS4,GTR13,GTR11 - 2 17 0.125397908867 1.0 1 18 0.442173282756 1.0 O Y - 17 1,3-beta-D-glucan synthase 1,3-beta-D-glucan synthase and glycosyl transferase. Previously annotated as GTR11 and GTR13 g4105.t1,BGS4,GTR11,GTR13 PF02364 PTHR12741,PTHR12741:SF4 - - - GO:0000148,GO:0003843,GO:0006075,GO:0016020 AT3G59100.1 ATGSL11,gsl11 glucan synthase-like 11 Cre11.g476376 FAP221 - 1 20 0.500011871414 1.0 2 19 0.131793816903 1.0 C n - 14 - - g11833.t1 PF08221 PTHR12949 - - - - AT3G49000.1 - RNA polymerase III subunit RPC82 family protein Cre03.g178100 - 2 20 0.159165672282 1.0 2 20 0.142193955524 1.0 O n - 11 Lipoxygenase Identified by comparative genomics as being present only in organisms having motile (MOT) cilia. Putative lipoxygenase. Contains PLAT/LH2 domain. Probably an arachidonate 5-lipoxygenase; may also be a hydroperoxide dehydratase. Previously annotated as g3686.t1 PF00400,PF01477,PF03451 PTHR13720,PTHR13720:SF6 KOG2106 - - GO:0005515 AT2G41500.1 EMB2776,LIS WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related Cre03.g200550 HYD3 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 1 Iron hydrogenase/prelamin A binding protein Hydrogenase-like protein; similar to prelamin A binding protein. N-terminal region could be organelle targeting sequence. g4316.t1,Cre03.g200550.t1.1 PF02256,PF02906 PTHR11615:SF31,PTHR11615 KOG2439 - - - AT4G16440.1 - ferredoxin hydrogenases Cre11.g468600 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 M n - 13 - - g11766.t1,Cre11.g468600.t1.1 - - - - - - - - - Cre07.g320750 CYG12 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n downregulated 15 Adenylate/guanylate cyclase Internal domain similar to guanylate cyclase 1 from Homo sapiens g7416.t1 PF07701,PF00211,PF07700 PTHR11920:SF143,PTHR11920 KOG4171 - - GO:0004383,GO:0006182,GO:0009190,GO:0016849,GO:0035556,GO:0020037 - - - Cre03.g145967 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 M n - 2 - - g2963.t1,Cre01.g060450.t1.1 PF01588 PTHR11586,PTHR11586:SF4 KOG2241 - - GO:0000049 AT2G40660.1 - Nucleic acid-binding, OB-fold-like protein Cre17.g698550 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 15 - - g16943.t1 PF00069 PTHR24055:SF162,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT1G71530.1 - Protein kinase superfamily protein Cre03.g208721 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 M n - 17 - - g4446.t1,Cre19.g755400.t1.1 PF04607 PTHR21262 - - - GO:0015969 AT3G17470.1 ATCRSH,CRSH Ca2+-activated RelA/spot homolog Cre03.g145447 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 13 - - g2937.t1,Cre01.g059200.t1.1 PF03133 PTHR12241,PTHR12241:SF5 - - - GO:0004835,GO:0006464 AT1G77550.1 - tubulin-tyrosine ligases;tubulin-tyrosine ligases Cre01.g034050 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n upregulated 5 - - g768.t1,Cre01.g034050.t1.1 PF00155 PTHR11751,PTHR11751:SF125 KOG0257 - - GO:0009058,GO:0016769,GO:0030170 AT1G77670.1 - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Cre01.g014650 PHX2 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 M n - - - - g355.t1,Cre01.g014650.t1.1,PHX2 PF03171 PTHR10869 - - - GO:0016491 AT3G06300.1 AT-P4H-2 P4H isoform 2 Cre16.g662500 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 M n - 7 - - g15996.t1,Cre16.g662500.t1.1 PF00856 PTHR12197:SF82,PTHR12197 - - - GO:0005515 - - - Cre03.g188750 HEL21 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 O n - - - - g3909.t1,HEL21 PF00271,PF00622,PF00270 PTHR24031,PTHR24031:SF155 KOG0349 3.6.4.13 K13177 GO:0003676,GO:0004386,GO:0005524,GO:0005515,GO:0008026 AT5G60990.1 - DEA(D/H)-box RNA helicase family protein Cre08.g367950 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 15 - - g8621.t1 PF00027 PTHR11635 - - - - - - - Cre05.g248300 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 4 - - g5166.t1 PF01566 PTHR11706 KOG1291 - - GO:0005215,GO:0006810,GO:0016020 AT5G67330.1 ATNRAMP4,NRAMP4 natural resistance associated macrophage protein 4 Cre11.g481400 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 M n - 10 - - g11954.t1 PF00069 PTHR22974,PTHR22974:SF1 KOG1151 2.7.11.1 K08864 GO:0004672,GO:0005524,GO:0006468 AT5G20930.1 TSL Protein kinase superfamily protein Cre01.g031100 TEF30 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C Y - 4 Predicted protein Contains a PDZ domain; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]; similar to Glycine max. SHOOT1 protein (AAK37555); conserved in Viridiplantae g705.t1,Cre01.g031100.t1.1 PF00595 PTHR17130:SF11,PTHR17130 - - - GO:0005515 AT1G55480.1 ZKT protein containing PDZ domain, a K-box domain, and a TPR region Cre03.g159550 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 11 - - g3266.t2, g3266.t1 - - - - - - - - - Cre09.g393551 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 M n - 9 - - g9419.t1 PF00397,PF01846 PTHR11864 KOG0155 - K12824 GO:0005515 AT3G19840.1 ATPRP40C,PRP40C pre-mRNA-processing protein 40C Cre08.g377200 SRH16 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 O n - - - - g8883.t1,SRH16 PF00628,PF00271,PF00385,PF00176,PF06461 PTHR10799,PTHR10799:SF131 KOG0383 3.6.4.12 K11643 GO:0005515,GO:0003676,GO:0004386,GO:0005524,GO:0003677 AT2G25170.1 CHD3,CHR6,GYM,PKL,SSL2 chromatin remodeling factor CHD3 (PICKLE) Cre07.g339900 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 SP n - 15 - - g7907.t1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G24715.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre17.g730450 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 15 - - g17651.t1 - - - - - - - - - Cre02.g114050 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 SP n - - - - g2355.t1 - - - - - - - - - Cre10.g428650 CDPKK1 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - - Calcium-dependent protein kinase kinase - g10585.t1,Cre10.g428650.t1.1,CDPKK1 PF00069,PF00027 PTHR24347,PTHR24347:SF40 KOG0585 2.7.11.17 K07359 GO:0004672,GO:0005524,GO:0006468 AT5G60550.1 ATSNAK1,GRIK2 geminivirus rep interacting kinase 2 Cre01.g007251 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 M n - 11 - - g189.t1 - - - - - - - - - Cre05.g236802 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n - - - - g5447.t1 - PTHR12618 - - - - - - - Cre03.g173100 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n - 15 - - g3569.t1,Cre03.g173100.t1.1 PF00722 PTHR10963,PTHR10963:SF6 - - - GO:0004553,GO:0005975 - - - Cre08.g378351 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 O n - - - - g8906.t1,Cre08.g378350.t1.3 - - - - - - - - - Cre13.g577250 GOX14 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n - - Glyoxal or galactose oxidase The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate g14185.t1,Cre13.g577250.t1.1,GOX14 PF09118,PF07250 - - - - - AT1G14430.1 - glyoxal oxidase-related protein Cre09.g407150 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 11 - - g10095.t1 - - - - - - - - - Cre16.g648650 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 5 - - g15698.t1 - - - - - - - - - Cre06.g264100 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n downregulated 15 - - g5934.t1 - - - - - - - - - Cre01.g025450 FAP122,DRC9 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n downregulated 13 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. Phosphorylation characterized by Boesger et al. (2009) [PMID: 19429781] g584.t1,Cre01.g025450.t1.1,FAP122 PF00612 - - - - GO:0005515 - - - Cre08.g381050 CEP8 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 SP n - 6 - - g8967.t1,CEP8 PF00112 PTHR12411:SF146,PTHR12411 - - - GO:0006508,GO:0008234 AT5G45890.1 SAG12 senescence-associated gene 12 Cre09.g411450 MOT45,PRR1 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 13 Pre-rRNA processing protein Pre-rRNA processing protein with Pfam PIH1/Nop17 domain. May be required either for nucleolar retention or correct assembly of the C/D box snoRNP. Previous gene model MOT45, identified by comparative genomics as being present only in organisms having mo g10187.t1,Cre09.g411450.t1.1,PRR1 PF08190 PTHR22997 - - - - - - - Cre11.g467568 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 O n downregulated 12 - - g11497.t1,Cre18.g749950.t1.1,Cre18.g749950.t1.2 PF00069 PTHR24352 KOG0598 2.7.11.1 K06276 GO:0004672,GO:0005524,GO:0006468 AT5G04510.1 ATPDK1,PDK1 3\'-phosphoinositide-dependent protein kinase 1 Cre11.g467566 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - - - - g11495.t1,Cre18.g750050.t1.1,Cre18.g750050.t1.2 - - - - - - - - - Cre16.g680902 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 SP n - 14 - - g16781.t1,Cre01.g068450.t1.1 PF05548 - - - - - - - - Cre05.g245350 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 SP n - - - - g5226.t1 PF01549 PTHR15414 - - - - AT3G28490.1 - Oxoglutarate/iron-dependent oxygenase Cre02.g095105 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n - 11 - - g1878.t1,Cre11.g472650.t1.1,Cre11.g472650.t1.2 PF10184 - - - - - AT3G04890.1 - Uncharacterized conserved protein (DUF2358) Cre01.g039450 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 C n - 12 - - g881.t1 PF12263 - - - - - - - - Cre09.g413850 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 8 - - g10251.t1,Cre09.g413850.t1.1 PF05686 PTHR12203 - - - - AT1G63420.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre03.g168100 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 15 - - g3457.t1,Cre03.g168100.t1.1 - - - - - - - - - Cre13.g607300 MAPK5 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 9 Mitogen-Activated Protein Kinase Mitogen-activated protein kinase homolog 5; Downstream kinase in the canonical MAP kinase pathway g14642.t1,Cre13.g607300.t1.1,MAPK5 PF00069 PTHR24055,PTHR24055:SF66 KOG0660 2.7.11.24 K08293 GO:0004672,GO:0005524,GO:0006468 AT4G11330.1 ATMPK5,MPK5 MAP kinase 5 Cre02.g105600 EYE3 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n - 13 Eyespot assembly protein, ABC1 kinase family Conserved eyespot protein related to ABC1/COQ8 mitochondrial putative ser/thr kinase. ABC1 kinase family protein required for eyespot assembly; very similar to Arabidopsis thaliana proteins associated with plastoglobules (At1g71810, At1g79600); PMID: 1051 g2165.t1,EYE3, g2165.t2,EYE3 PF03109 PTHR10566,PTHR10566:SF10 KOG1235 - - - AT3G24190.1 - Protein kinase superfamily protein Cre04.g232602 GRX4 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - - Glutaredoxin, CGFS type Glutaredoxin 4, CGFS type, probably cytosolic, contains 2 glutaredoxin modules. PMID: 16328797 g5064.t1,Cre32.g781100.t1.1,Cre32.g781100.t1.2,GRX4 PF00085,PF00462 PTHR10293 KOG0911 - - GO:0045454,GO:0009055,GO:0015035 AT4G04950.1 - thioredoxin family protein Cre16.g688638 CYG33 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n - 13 Adenylate/guanylate cyclase Similar to membrane guanylyl cyclase OlGC7 [Oryzias latipes] g16850.t1,Cre01.g071500.t1.1,CYG33 PF00211 PTHR11920:SF135,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre01.g030100 PTK13 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 M n - 8 Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g683.t1,PTK13, g683.t2,PTK13 PF07714 PTHR23257:SF334,PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT2G40860.1 - protein kinase family protein / protein phosphatase 2C ( PP2C) family protein Cre13.g587250 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 15 - - g14407.t1 - - - - - - - - - Cre05.g239000 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 O n - 18 - - g5511.t1 - - - - - - - - - Cre02.g087900 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 SP n - - - - g1635.t1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G79570.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre07.g325725 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 M n - - - - g7540.t1,Cre26.g772600.t1.1 PF00106 PTHR24322 KOG1205 - - GO:0008152,GO:0016491 AT5G06060.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre03.g206705 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 8 - - g4427.t1 PF10250 - - - - - - - - Cre10.g448750 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n - 8 - - g11032.t1 PF05686 PTHR12203 - - - - - - - Cre08.g358561 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 O n downregulated 12 - - g8377.t1,Cre28.g776950.t1.1,Cre28.g776950.t1.2 - - - - - - - - - Cre02.g117150 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 M n - - - - g2425.t1,Cre02.g117150.t1.1 PF00004 PTHR23077,PTHR23077:SF10 KOG0744 - - GO:0005524 AT4G24710.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre15.g636800 GST12 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 2 - - g15359.t1,GST12 PF02798 PTHR11260 KOG0867 - - GO:0005515 AT2G02930.1 ATGSTF3,GST16,GSTF3 glutathione S-transferase F3 Cre03.g163650 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n - - - - g3355.t1,Cre03.g163650.t1.1 - - - - - - - - - Cre06.g303400 FAP16 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 12 Flagellar Associated Protein Putative flagellar protein, similar to echinoderm microtubule binding protein; WD40 repeat containing protein; found in flagellar proteome [PMID: 15998802] g7025.t1 PF00400 PTHR13720 KOG2106 - - - - - - Cre13.g575250 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 9 - - g14138.t1 - PTHR10663,PTHR10663:SF5 - - - - AT5G27970.2 - ARM repeat superfamily protein Cre17.g697000 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 M n - 16 - - g16905.t1 PF00560 PTHR23155,PTHR23155:SF251 KOG0617 - - GO:0005515 AT4G35470.1 PIRL4 plant intracellular ras group-related LRR 4 Cre03.g152550 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 SP n - 14 - - g3106.t1 PF00400,PF05729 PTHR26208:SF54,PTHR26208 KOG0279 - - - AT3G18130.1 RACK1C_AT receptor for activated C kinase 1C Cre09.g401145 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 9 - - g9983.t1,Cre02.g138750.t1.1,Cre02.g138750.t1.2 PF03372 PTHR12393 KOG3873 3.1.4.12 K12351 - - - - Cre02.g085900 IPP1 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n - 4 - - g1590.t1,Cre02.g085900.t1.1,IPP1 PF00459 PTHR20854:SF10,PTHR20854 KOG2951 - - GO:0004437 AT1G31190.1 IMPL1 myo-inositol monophosphatase like 1 Cre12.g555100 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - - - - g13431.t1,Cre12.g555100.t1.1 - PTHR11795:SF313,PTHR11795 - - - - AT2G40580.1 - Protein kinase superfamily protein Cre10.g440250 PGM19 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n upregulated 2 - - g10837.t1,PGM19 PF00300 PTHR11931 KOG0235 - - GO:0006096,GO:0016868 AT3G60450.1 - Phosphoglycerate mutase family protein Cre04.g226150 AOC1 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 O n downregulated 15 Amino acid carrier Amino acid carrier 1; belongs to APC (Amino acid Polyamine organoCation) family g4948.t1,AOC1 PF00324 PTHR11785,PTHR11785:SF13 KOG1289 - - GO:0006810,GO:0016020,GO:0055085,GO:0003333,GO:0015171 AT2G01170.1 BAT1 bidirectional amino acid transporter 1 Cre16.g669050 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n - 14 - - g16254.t1 - - - - - - - - - Cre06.g278141 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 16 - - g6286.t1,Cre13.g595550.t1.1 - - - - - - - - - Cre06.g278144 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 C n - 6 - - g6289.t1,Cre13.g595700.t1.1,Cre13.g595700.t1.2 PF01789 - - - - GO:0005509,GO:0009523,GO:0009654,GO:0015979,GO:0019898 - - - Cre07.g325752 FAP258 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 M n - - Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. g7566.t1,Cre26.g773700.t1.1,FAP258 - - - - - - - - - Cre02.g095131 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 O n - 14 - - g1904.t1,Cre11.g473750.t1.1 - - - - - - - - - Cre17.g741350 KIN7-4 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 16 - - g17932.t1,Cre17.g741350.t1.1,KIN7-4 PF00225 PTHR24115 - - - GO:0003777,GO:0005524,GO:0007018 AT5G60930.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre06.g259650 MPA7 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 O n - 16 - - g5837.t1,Cre06.g259650.t1.1,MPA7 PF00149 PTHR10161 KOG2679 - - GO:0016787 AT1G14700.1 ATPAP3,PAP3 purple acid phosphatase 3 Cre16.g674150 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 C n - - - - g16637.t1 - PTHR24362,PTHR24362:SF96 - - - - - - - Cre06.g288908 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 C n - 5 - - g6705.t1,Cre06.g288908.t1.1 PF00069 PTHR24349,PTHR24349:SF105 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT3G12690.1 AGC1.5 AGC kinase 1.5 Cre01.g018850 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n upregulated 2 - - g443.t1,Cre01.g018850.t1.1 PF03372 PTHR12121 KOG0620 - - - AT3G18500.2 - DNAse I-like superfamily protein Cre01.g007737 FBT1 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n - 13 - - g199.t1,FBT1 PF03092 PTHR24003:SF331,PTHR24003 - - - - AT2G32040.1 - Major facilitator superfamily protein Cre02.g095121 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n - 1 - - g1894.t1 PF01479,PF00849 PTHR21600 - - - GO:0003723,GO:0001522,GO:0009451,GO:0009982 AT2G39140.1 SVR1 pseudouridine synthase family protein Cre15.g637100 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 6 - - g15365.t1,Cre15.g637100.t1.1 PF00240,PF00627 PTHR10677,PTHR10677:SF3 KOG0010 - K04523 GO:0005515 AT2G17190.1 - ubiquitin family protein Cre01.g045450 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n downregulated 11 - - g1017.t1,Cre01.g045450.t1.1 - - - - - - - - - Cre17.g728850 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 M n - 12 - - g17615.t1 - - - - - - - - - Cre13.g602500 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n upregulated 4 - - g14560.t1 - - - - - - - - - Cre07.g333000 CEP4 - 0 5 1.0 1.0 1 4 0.142409436662 1.0 O n - 16 Cysteine endopeptidase Cysteine endopeptidases (EC 3.4.22), C1A family (papain-type); most similar to counting factor associated peptidase of Dictyostelium discoideum and to insect proteinases possibly involved in defense mechanisms (PMID: 10050046); contains N-terminal catheps g7746.t1,CEP4, g7746.t2,CEP4 PF00112,PF08246 PTHR12411:SF141,PTHR12411 KOG1543 - - GO:0006508,GO:0008234 AT4G36880.1 CP1 cysteine proteinase1 Cre36.g759597 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 M n - 7 - - g18365.t1,Cre05.g230150.t1.1,Cre05.g230150.t1.2 PF00097 - - - - - - - - Cre03.g165000 LPA1,EFG10 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O Y - 4 Translation elongation factor EFG/EF2, LepA-related Translation elongation factor EFG/EF2 related to membrane GTP-binding protein LepA. Previously annotated as LPA1 g3382.t1,Cre03.g165000.t1.1,EFG10 PF06421,PF03144,PF00679,PF00009 PTHR23115:SF76,PTHR23115 KOG0462 - K03596 GO:0005525,GO:0003924 AT5G08650.1 - Small GTP-binding protein Cre02.g108000 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 C n - 10 - - g2214.t2, g2214.t1 PF12330 PTHR11584:SF260,PTHR11584 KOG2464 - - - AT1G09450.1 - Protein kinase superfamily protein Cre12.g559450 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n downregulated 13 - - g13335.t1 PF00168 PTHR10774:SF28,PTHR10774 - - - GO:0005515 AT1G20080.1 ATSYTB,NTMC2T1.2,NTMC2TYPE1.2,SYT2,SYTB Calcium-dependent lipid-binding (CaLB domain) family protein Cre09.g394850 TEF24 - 1 4 0.152163117949 1.0 1 4 0.142409436662 1.0 O n - 7 LrgB-like protein LrgB-like protein, mitochondrial localization assumed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018] g9393.t1,Cre09.g394850.t1.1,TEF24 PF04172 - - - - - AT1G32080.1 - membrane protein, putative Cre07.g337100 - 3 38 0.147635740762 1.0 1 40 1.0 1.0 C n - 17 - - g7843.t1,Cre07.g337100.t1.1 - - - - - - - - - Cre02.g102500 RAD51C - 1 4 0.152163117949 1.0 0 5 1.0 1.0 SP n - 9 - - g2093.t1,RAD51C PF08423 PTHR22942,PTHR22942:SF14 KOG1434 - K10870 - AT2G45280.1 ATRAD51C,RAD51C RAS associated with diabetes protein 51C Cre06.g303751 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 SP n - 14 - - g7034.t1 - - - - - - - - - Cre12.g493450 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n - 15 - - g12081.t1 - - - - - - - - - Cre06.g285550 PTK - 1 4 0.152163117949 1.0 0 5 1.0 1.0 M n - 8 - - g6637.t1,PTK PF07714 PTHR23257:SF369,PTHR23257 - - - GO:0004672,GO:0006468 AT3G24715.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre01.g000250 SNR1 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 M n - 4 - - g8.t1,Cre01.g000250.t1.1,SNR1 PF09335 PTHR12677 KOG3140 - - - AT1G22850.1 - SNARE associated Golgi protein family Cre12.g536200 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n - 12 - - g13186.t1 - - - - - - - - - Cre06.g265850 TCP2,CTPA2,TSP2 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 M Y - 7 Tail-specific/C-terminal processing peptidase protease Serine peptidase of the S41 family; homologous to C-terminal processing peptidase, D1 processing peptidase; contains a PDZ domain; could be involved in TRPl mediated signaling cascade (Suneel Kateriya). Previously annotated as TSP2, but this conflicts wi g5968.t1,TCP2,TSP2 PF00595,PF03572 PTHR23136,PTHR23136:SF5 - - - GO:0005515,GO:0006508,GO:0008236 AT5G46390.2 - Peptidase S41 family protein Cre16.g668300 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n downregulated 15 - - g16272.t1 - - - - - - - - - Cre03.g185700 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 SP n - - - - g3848.t1 - - - - - - - - - Cre03.g176400 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 M n - - - - g3644.t1 PF00069,PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G67890.1 - PAS domain-containing protein tyrosine kinase family protein Cre17.g741500 KIL7 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 M n - 11 - - g17935.t1,KIL7 PF00225 PTHR24115:SF312,PTHR24115 KOG0244 - - GO:0003777,GO:0005524,GO:0007018 AT3G50240.1 KICP-02 ATP binding microtubule motor family protein Cre01.g031951 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n - 17 - - g723.t1,Cre01.g031950.t1.3 - - - - - - - - - Cre01.g021550 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n - 8 - - g499.t1 - PTHR12298,PTHR12298:SF13 - - - - - - - Cre01.g028423 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n - 6 - - g649.t1,Cre01.g028423.t1.1 PF00282 PTHR11999,PTHR11999:SF11 KOG0628 4.1.1.25 K01592 GO:0016831,GO:0019752,GO:0030170 AT2G20340.1 - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Cre04.g219450 DNJ30:MIDFRAG - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n - - - - g4782.t1,Cre04.g219450.t1.1,DNJ30:MIDFRAG PF00355 - - - - GO:0016491,GO:0051537,GO:0055114 - - - Cre14.g623000 PGP7 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 C n - 6 - - g15015.t1,PGP7 PF00702 PTHR18901 KOG2914 - - GO:0003824,GO:0008152 AT4G39970.1 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre07.g338602 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n downregulated 9 - - g7876.t1 PF00817,PF11799 PTHR11076,PTHR11076:SF11 - 2.7.7.7 K03509 GO:0003684,GO:0003887,GO:0006281 AT5G44740.2 POLH Y-family DNA polymerase H Cre02.g111750 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 M n - 4 - - g2300.t1,Cre02.g111750.t1.1 - - - - - - - - - Cre08.g382800 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 C n - 16 - - g9013.t1,Cre08.g382800.t1.1 PF00069,PF00036 PTHR24347,PTHR24347:SF13 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT5G12180.1 CPK17 calcium-dependent protein kinase 17 Cre17.g697650 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n - 8 - - g16920.t1 PF02897,PF00326 PTHR11757 KOG2237 3.4.21.83 K01354 GO:0004252,GO:0006508,GO:0008236 AT1G50380.1 - Prolyl oligopeptidase family protein Cre10.g424700 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 SP n - 17 - - g10499.t1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G58640.1 - Mitogen activated protein kinase kinase kinase-related Cre08.g362650 IFT140 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n - 14 Intraflagellar transport protein 140 subunit of IFT complex A; [PMID: 9585417; PMID: 11062270] g8492.t1 PF00400 PTHR15722 KOG3617 - - - AT5G13480.2 FY Transducin/WD40 repeat-like superfamily protein Cre16.g674515 IDA7 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n - 12 Flagellar inner dynein arm I1 intermediate chain IC140 Flagellar inner dynein arm I1 intermediate chain IC140 [AF159260, PMID: 9843574]. Previously annotated as IDA7 g16722.t1,Cre01.g065950.t1.1,IDA7 PF00400 PTHR12442,PTHR12442:SF5 KOG1587 - - - - - - Cre12.g512650 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n - 15 - - g12293.t1 - - - - - - - - - Cre17.g697600 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n - 9 - - g16918.t1 - - - - - - - - - Cre02.g095124 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 C n - 11 - - g1897.t1,Cre11.g473400.t1.1,Cre11.g473400.t1.2 PF01753 PTHR13244 - - - GO:0008270 AT5G65450.1 UBP17 ubiquitin-specific protease 17 Cre02.g094600 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 C n - 17 - - g1789.t1 PF03415,PF00431 PTHR10895 - - - - - - - Cre04.g213950 SRR23 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n - 7 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g4698.t1,SRR23 PF00530 PTHR19331:SF421,PTHR19331 KOG4462 - - GO:0005044,GO:0016020 AT5G10020.1 - Leucine-rich receptor-like protein kinase family protein Cre13.g578100 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 O n - 8 - - g14205.t1 PF11894 - - - - - AT5G51200.1 - Protein of unknown function (DUF3414) Cre04.g227600 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 C n - 16 - - g4981.t1,Cre04.g227600.t1.1 PF00560 PTHR26393 - - - GO:0005515 AT3G51740.1 IMK2 inflorescence meristem receptor-like kinase 2 Cre07.g338250 - 1 4 0.152163117949 1.0 0 5 1.0 1.0 SP n - 5 - - g7869.t1 PF04073 - - - - - AT4G16510.1 - YbaK/aminoacyl-tRNA synthetase-associated domain Cre09.g402515 AMX1 - 2 20 0.159165672282 1.0 1 21 0.491276673287 1.0 O n - - Copper amine oxidase Contains PTS1 canonical sequence g10020.t1,Cre02.g140300.t1.1,AMX1 PF01179,PF02728,PF02727 PTHR10638,PTHR10638:SF12 KOG1186 1.4.3.21 K00276 GO:0005507,GO:0008131,GO:0009308,GO:0048038,GO:0055114 AT2G42490.1 - Copper amine oxidase family protein Cre06.g269200 CYA7 - 1 23 0.547139730917 1.0 2 22 0.163470497089 1.0 M n - 16 - - g6040.t1, g6040.t3, g6040.t2 PF00560,PF08263, PF00211 PTHR24420 KOG0472 - - GO:0009190,GO:0016849,GO:0035556, GO:0005515 AT5G46330.1, AT2G25790.1 FLS2 Leucine-rich receptor-like protein kinase family protein Cre05.g232550 PGM4,GPM4 - 2 22 0.182495420229 1.0 2 22 0.163470497089 1.0 O Y downregulated 12 Phosphoglycerate mutase - g5123.t1,Cre05.g232550.t1.1,PGM4 PF00300 PTHR23029 KOG0235 - - - AT5G22620.3 - phosphoglycerate/bisphosphoglycerate mutase family protein Cre03.g149600 CYG53 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - - Adenylate/guanylate cyclase Protein domain similar to membrane guanylyl cyclase [Oryzias latipes] g3043.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre14.g623403 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 17 - - g15025.t1,Cre14.g623403.t1.1 - - - - - - - - - Cre10.g459900 PHX16 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - - - - g11277.t1,PHX16, g11277.t2,PHX16 PF01549,PF03171 PTHR10869 KOG1591 - - GO:0016491 AT5G18900.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre10.g458050 BCA3 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - - Branched chain amino acid aminotransferase Branched-chain amino acid aminotransferase (BCAT1) (EC:2.6.1.42); class IV aminotransferase g11235.t1,Cre10.g458050.t1.1,BCA3 PF01063 PTHR11825,PTHR11825:SF13 - - - GO:0003824,GO:0008152 AT5G27410.2 - D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein Cre04.g214050 SULTR4,SUL4 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 9 Sulfate transporter, MFS type Putative sulfate transporter of the MFS type; orthologous to At1g80310 and At2g25680; probably plasma membrane. Previously annotated as SULTR4 g4696.t1,Cre04.g214050.t1.1,SUL4 - - - - - - AT2G25680.1 MOT1 molybdate transporter 1 Cre07.g326500 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n upregulated 5 - - g7592.t1,Cre07.g326500.t1.1 - - - - - - - - - Cre04.g227400 FRE1 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - - Ferric-chelate reductase/ oxidoreductase Homolog to FRO1 in Arabidopsis. Expression changes with light intensity were studied by Long and Merchant 2008 [PMID: 19067961]. Cis-acting regulatory elements were characterized by Fei et al. 2009 [PMID: 19351705]. g4975.t1,Cre04.g227400.t1.1 PF01794,PF08022,PF08030 PTHR11972:SF3,PTHR11972 - - - GO:0005506,GO:0009055,GO:0016021,GO:0016491,GO:0050660 AT1G01580.1 ATFRO2,FRD1,FRO2 ferric reduction oxidase 2 Cre10.g425350 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - 17 - - g10513.t1,Cre10.g425350.t1.1 PF00069,PF07714 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT2G14440.1 - Leucine-rich repeat protein kinase family protein Cre03.g180300 SIR3 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 7 Sulfite reductase Sulfite reductase, bacterial type, flavoprotein subunit (CysJ); has flavodoxin, FAD-binding and NADPH-binding domains, plus potential organelle-targeting sequence; some similarity to NADP-binding domain of FNR and to cytochrome P450 reductases. In the cy g3737.t1,Cre03.g180300.t1.1,SIR3 PF00667,PF00175,PF00258 PTHR19384,PTHR19384:SF41 KOG1158 - - GO:0016491,GO:0055114,GO:0010181 AT4G30210.2 AR2,ATR2 P450 reductase 2 Cre12.g553450 CNG1 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 16 Cyclic-nucleotide gated potassium channel - g13467.t1,CNG1 PF00520,PF00027 PTHR10217:SF393,PTHR10217 KOG0500 - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G22200.1 AKT2,AKT2/3,AKT3,KT2/3 potassium transport 2/3 Cre01.g045601 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 C n - 14 - - g1021.t1,Cre01.g045601.t1.1 PF00089,PF00530 PTHR19331:SF16,PTHR19331 KOG3627 - K13912 GO:0004252,GO:0006508,GO:0005044,GO:0016020 - - - Cre12.g495959 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 C n - - - - g12149.t1 - - - - - - - - - Cre12.g528100 CPZ - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 13 Zinc carboxypeptidase Zinc carboxypeptidase, M14 peptidase class. Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA). Previously annotated as SSA2 g13006.t1,CPZ PF00246 PTHR12756 - - - GO:0004181,GO:0006508,GO:0008270 - - - Cre03.g145487 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 O n - 10 - - g2939.t1,Cre01.g059300.t1.1 PF00097 - KOG2177 - - - AT5G54990.1 - RING/U-box superfamily protein Cre13.g588100 CYN19-3,CYN5 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 6 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID:15047905]; similar to At3g56070 (AtCYP19-3, ROC2); A.t. ortholog is cytosolic, but CYN19-3 has N-terminal extension. Previously annotated as CYN19-3 g14426.t1,Cre13.g588100.t1.1,CYN5 PF00160 PTHR11071,PTHR11071:SF158 KOG0865 5.2.1.8 K09565 GO:0003755,GO:0006457 AT3G56070.1 ROC2 rotamase cyclophilin 2 Cre06.g278259 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 9 - - g6400.t1,Cre13.g601250.t1.1,Cre13.g601250.t1.2 PF10442 - - - - - - - - Cre02.g078000 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - 8 - - g1410.t1 - - - - - - - - - Cre02.g095077 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 C n upregulated 2 - - g1851.t1,Cre11.g471550.t1.1,Cre11.g471550.t1.2 PF04134,PF00571 PTHR11911 - - - GO:0005515 AT5G50100.1 - Putative thiol-disulphide oxidoreductase DCC Cre07.g312850 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 SP n - 13 - - g7240.t1,Cre07.g312850.t1.1 PF05078 - - - - - AT3G02430.1 - Protein of unknown function (DUF679) Cre10.g425251 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 10 - - g10511.t1 - - - - - - - - - Cre16.g663750 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - 10 - - g16025.t1 - - - - - - - - - Cre10.g453807 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 C n upregulated 13 - - g11144.t1, g11144.t2,Cre10.g453807.t1.1 PF00595,PF03572 PTHR18868:SF18,PTHR18868 - - - GO:0005515,GO:0006508,GO:0008236 AT3G57680.1 - Peptidase S41 family protein Cre17.g720700 ANK14 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 C n - 13 Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g17442.t2,ANK14, g17442.t1,ANK14 PF00023 PTHR23206 KOG0502, KOG4412 - - GO:0005515 AT2G28840.1, AT3G04710.3 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana, ankyrin repeat family protein Cre13.g576600 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n downregulated 16 - - g14169.t1,Cre13.g576600.t1.1 PF07714 PTHR23257,PTHR23257:SF293 KOG0192 - - GO:0004672,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre10.g463370 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - 7 - - g11356.t1,Cre10.g463370.t1.1 - - - - - - - - - Cre17.g718000 PHC7 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - 14 Cell wall protein pherophorin-C7 Pherophorin-C7 (PHC7) [PMID: 16367971]; very similar to extracellular matrix protein (cell wall protein) pherophorin-C1 [Genbank entry DQ196107], which belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich ( g17377.t1,PHC7 PF12499 - - - - - - - - Cre12.g547700 TTL14 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 9 - - g13599.t1,Cre12.g547700.t1.1,TTL14 PF03133 PTHR12241,PTHR12241:SF62 - - - GO:0004835,GO:0006464 AT1G77550.1 - tubulin-tyrosine ligases;tubulin-tyrosine ligases Cre01.g033050 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 13 - - g746.t1 - PTHR21290:SF13,PTHR21290 - - - - AT1G43580.1 - Sphingomyelin synthetase family protein Cre09.g390800 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n upregulated 2 - - g9476.t1,Cre09.g390800.t1.1 - - - - - - - - - Cre11.g467680 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - - - - g11610.t1,Cre18.g744850.t1.1 PF03372 PTHR12121 - - - - AT5G11350.1 - DNAse I-like superfamily protein Cre06.g305100 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - - - - g7062.t1 - - - - - - - - - Cre09.g411950 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 O n - 18 - - g10199.t1 PF00249 PTHR10641 - - - - AT3G13890.1 ATMYB26,MS35,MYB26 myb domain protein 26 Cre16.g687500 ARP2 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 O n - 8 Actin-related protein ChromDB ARP3404, similar to Arp2 of the Arp2/3 complex g16340.t1,ARP2 PF00022 PTHR11937,PTHR11937:SF37 KOG0677 - - - AT3G27000.1 ARP2,ATARP2,WRM actin related protein 2 Cre13.g591073 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 M n - 16 - - g14495.t1,Cre13.g591073.t1.1 PF00564 - - - - GO:0005515 - - - Cre01.g013000 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - 6 - - g320.t1 - PTHR11276:SF17,PTHR11276 - - - - - - - Cre04.g223050 CAH2 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n downregulated 6 Carbonic anhydrase, alpha type, periplasmic Carbonic anhydrase 2 (CA2), alpha type; periplasmic localization; high-CO2-inducible [PMID: 2124702]; identical to CAH2_CHLRE, P24258 (gi:115455). The inorganic carbon-concentrating mechanism has been reviewed by Spalding (2008) [PMID: 17597098]. g4866.t1,Cre04.g223050.t1.1,CAH2 PF00194 PTHR18952,PTHR18952:SF2 KOG0382 4.2.1.1 K01672 - AT4G20990.1 ACA4,ATACA4 alpha carbonic anhydrase 4 Cre12.g537641 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 SP n - 5 - - g13221.t1,Cre65.g793300.t1.1,Cre65.g793300.t1.2 PF03062 PTHR13906:SF4,PTHR13906 KOG2704 - - - AT1G12640.1 - MBOAT (membrane bound O-acyl transferase) family protein Cre10.g457150 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n downregulated 9 - - g11216.t1,Cre10.g457150.t1.1 - - KOG3707 - - - AT1G35220.1 - - Cre14.g613850 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 O n - 17 - - g14791.t1 PF00773 PTHR23355,PTHR23355:SF13 - 3.1.13.- K12585 GO:0003723,GO:0004540 AT2G17510.2 EMB2763 ribonuclease II family protein Cre14.g619825 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 M n - - - - g14935.t1,Cre14.g619839.t1.3 PF04406 PTHR10848 KOG2795 - - GO:0003677,GO:0003824,GO:0005524,GO:0005694,GO:0006259 AT1G63990.1 SPO11-2 sporulation 11-2 Cre12.g529550 CALK1,ALK1 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 13 Aurora-like kinase Aurora-Like Kinase; formerly known as CALK (Chlamydomonas Aurora-Like Kinase [gi:9716372; PMID: 11121779]. Serine/threonine protein kinase; regulates chromosome segregation and cytokinesis in mammals. Previously annotated as CALK1 g13038.t1,Cre12.g529550.t1.1,ALK1,CALK1 PF00069 PTHR24349:SF101,PTHR24349 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre01.g021450 TPR4 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 7 - - g497.t3,TPR4, g497.t2,TPR4, g497.t1,TPR4 PF07719,PF00515 PTHR23083,PTHR23083:SF96 KOG1126 - - GO:0005515 AT4G37460.1 SRFR1 Tetratricopeptide repeat (TPR)-like superfamily protein Cre03.g176300 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 C n - 9 - - g3641.t1 - PTHR11276 KOG2534 - - - - - - Cre01.g003650 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 9 - - g92.t2, g92.t1 - - - - - - - - - Cre12.g548500 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n downregulated - - - g13580.t1,Cre12.g548500.t1.1 - - - - - - - - - Cre06.g263000 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 15 - - g5908.t1 - - - - - - - - - Cre10.g463300 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - 7 - - g11353.t1,Cre10.g463300.t1.1 - - - - - - AT4G16180.2 - - Cre13.g572700 FLA15,FAP66,IFT144 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 14 Intraflagellar transport protein 144 Highly conserved Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] and previously annotated as FAP66. Identified by Iomini et al. (2009) as IFT144, corresponding to the FLA15 locus [PMID: 19720863]. Homolog of DYF2 in other g14083.t1,Cre13.g572700.t1.1,FAP66,FLA15 PF00400,PF04053 PTHR14920 KOG2247 - - GO:0005198,GO:0006886,GO:0016192,GO:0030117 AT5G13840.1 FZR3 FIZZY-related 3 Cre06.g280450 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 15 - - g6523.t1 - - - - - - - - - Cre02.g092150 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n downregulated 12 - - g1727.t1,Cre02.g092150.t1.1 PF00560 PTHR23155:SF252,PTHR23155 KOG0617 - - GO:0005515 AT1G35710.1 - Protein kinase family protein with leucine-rich repeat domain Cre16.g651950 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - - - - g15769.t1,Cre16.g651950.t1.1 - - - - - - - - - Cre07.g328250 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 M n - - - - g7636.t1,Cre07.g328250.t1.1 PF00806 PTHR12537:SF12,PTHR12537 - - - GO:0003723 AT3G10360.1 APUM4,PUM4 pumilio 4 Cre07.g346418 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 1 - - g8060.t1,Cre07.g346418.t1.1 - PTHR13271 - - - - AT3G56570.1 - SET domain-containing protein Cre09.g386912 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - 5 - - g9572.t1,Cre02.g121200.t1.1,Cre02.g121200.t1.2 PF03982 PTHR12317 KOG0831 - - GO:0016747 AT3G51520.1 - diacylglycerol acyltransferase family Cre17.g707200 LIC2 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 SP n - 13 Ligand-gated ion channel Some similarity to neuromediator-gated ion channels (nicotinic acetylcholine-gated ion channel); belongs to a small family of three linked genes g17135.t1,LIC2 PF02931 PTHR18945,PTHR18945:SF96 - - - GO:0006811,GO:0016021,GO:0005230,GO:0006810,GO:0016020 - - - Cre03.g174900 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 11 - - g3612.t1 PF00536 - KOG3910 - - - - - - Cre01.g016300 CAM3 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 C n - 2 - - g387.t1,CAM3 - PTHR10891 - - - - AT1G76650.1 CML38 calmodulin-like 38 Cre17.g746397 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 C n - 8 - - g18044.t1,Cre20.g758700.t1.1 PF01789 - - - - GO:0005509,GO:0009523,GO:0009654,GO:0015979,GO:0019898 - - - Cre02.g108250 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 17 - - g2219.t1 PF02696 PTHR12153:SF19,PTHR12153 KOG2542 - - - AT5G13030.1 - - Cre05.g242856 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 M n - 16 - - g5290.t1 PF00400,PF02225,PF00082 PTHR10795:SF112,PTHR10795 - - - GO:0004252,GO:0006508 AT5G50230.1 - Transducin/WD40 repeat-like superfamily protein Cre17.g734548 PPD2 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 M n - - Pyruvate phosphate dikinase, chloroplastic Pyruvate phosphate dikinase (PPDK) (EC 2.7.9.1), chloroplastic. Functions in phosphoenolpyruvate formation in the plastid and presumably governs the rate of CO2 fixation. Similar to Flavaria pringlei plastid PPDK (GenBank CAA53223). g17763.t1,Cre15.g644850.t1.1,PPD2 PF02896,PF01326,PF00391 PTHR22931,PTHR22931:SF9 - 2.7.9.1 K01006 GO:0016310,GO:0016772,GO:0005524,GO:0016301 AT4G15530.5 PPDK pyruvate orthophosphate dikinase Cre03.g183350 SRH7 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 10 - - g3800.t1,SRH7 PF00176,PF00271 PTHR10799,PTHR10799:SF49 KOG0387 - - GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT5G63950.1 CHR24 chromatin remodeling 24 Cre06.g265150 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 C n - 17 - - g5955.t1 PF00443 PTHR24006 - 3.1.2.15 K11833 GO:0004221,GO:0006511 AT5G22030.1 UBP8 ubiquitin-specific protease 8 Cre14.g616700 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 SP n - 18 - - g14857.t1 - - - - - - - - - Cre03.g200250 ICL3 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 C n - 6 - - g4322.t1,Cre03.g200250.t1.1,ICL3 PF00463 PTHR21631,PTHR21631:SF4 KOG1260 - - GO:0003824,GO:0008152 AT1G77060.1 - Phosphoenolpyruvate carboxylase family protein Cre07.g354900 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 O n downregulated 17 - - g8255.t1 - - - - - - - - - Cre02.g104126 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 11 - - g2130.t1 - - KOG4593 - - - - - - Cre08.g383800 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - 17 - - g9034.t1 - - - - - - - - - Cre01.g007811 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 C n - 10 - - g201.t1 - - - - - - - - - Cre06.g268750 MME,MME1 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 M n - 1 Malate dehydrogenase, decarboxylating Malic enzyme, NAD-dependent (EC 1.1.1.39); malate dehydrogenase (decarboxylating; probable mitochondrial location based on Target-P prediction g6029.t1,Cre06.g268750.t1.1,MME PF00390,PF03949 PTHR23406:SF2,PTHR23406 KOG1257 1.1.1.39 K00028 GO:0016616,GO:0051287 AT4G00570.1 NAD-ME2 NAD-dependent malic enzyme 2 Cre12.g535201 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 M n - 8 - - g13165.t1,Cre12.g535200.t1.3 - - - - - - - - - Cre09.g389600 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 M n - - - - g9505.t1 PF07714 PTHR26391,PTHR26391:SF393 KOG0192 - - GO:0004672,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre01.g020400 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - - - - g474.t1,Cre01.g020400.t1.1 PF00400 PTHR22848 KOG0275 - K13111 - AT1G73720.1 SMU1 transducin family protein / WD-40 repeat family protein Cre14.g623650 ADH7 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 C n downregulated 10 - - g15030.t1,Cre14.g623650.t1.1,ADH7 PF08240,PF00107 PTHR11695,PTHR11695:SF315 KOG0023 - - GO:0008270,GO:0016491,GO:0055114 AT4G37980.1 ATCAD7,CAD7,ELI3,ELI3-1 elicitor-activated gene 3-1 Cre07.g355650 AMT6 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 2 Ammonium transporter Belongs to AMT1 family [PMID: 15821986], related to Rhesus proteins; (Amt1:6 or Amt1.6). Previously annotated as AMT1F g8270.t1,AMT6 PF00909 PTHR11730:SF8,PTHR11730 KOG0682 - - GO:0008519,GO:0016020,GO:0072488 AT1G64780.1 AMT1;2,ATAMT1;2 ammonium transporter 1;2 Cre05.g238052 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 16 - - g5479.t1 PF00023 PTHR24188 KOG4412 - - GO:0005515 AT3G04710.3 - ankyrin repeat family protein Cre17.g720261 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 M n - 16 - - g17433.t1 PF05057 PTHR12482 - - - - AT1G58350.1 ZW18 Putative serine esterase family protein Cre03.g159200 UBC8 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 C Y - - Ubiquitin-protein ligase Putative ubiquitin-protein ligase (E3, HECT domain); HECT-domain-containing protein, ubiquitin-transferase family g3260.t1 PF00612,PF00632 PTHR11254,PTHR11254:SF145 KOG0170 - - GO:0005515,GO:0005622,GO:0006464,GO:0016881 AT3G53090.1 UPL7 ubiquitin-protein ligase 7 Cre12.g534350 HCD2 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 13 - - g13142.t1,Cre12.g534350.t1.1,HCD2 PF00725,PF02737 PTHR23309 KOG2304 1.1.1.157 K00074 GO:0006631,GO:0016491 AT3G15290.1 - 3-hydroxyacyl-CoA dehydrogenase family protein Cre06.g283250 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 O n - 12 - - g6587.t1,Cre06.g283250.t1.1 - - - - - - - - - Cre19.g751247 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 O n - 16 - - g18144.t1, g18144.t2 PF11527 PTHR15487,PTHR15487:SF2 - - - - - - - Cre13.g562300 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 O n - 14 - - g13838.t1 PF00538 PTHR11467 - - - GO:0000786,GO:0003677,GO:0005634,GO:0006334 AT2G18050.1 HIS1-3 histone H1-3 Cre08.g358571 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - 5 - - g8386.t1,Cre28.g776550.t1.1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre07.g328850 CNK8 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - - NimA-related protein kinase NimA-(never-in-mitosis) related protein kinase homolog 8 [gi:34334401, PMID: 15068267] g7647.t1,Cre07.g328850.t1.1,CNK8 PF00069 PTHR24362,PTHR24362:SF138 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT3G44200.1 ATNEK6,IBO1,NEK6 NIMA (never in mitosis, gene A)-related 6 Cre12.g523050 CCT11 - 0 6 1.0 1.0 1 5 0.168357281403 1.0 M n - 13 - - g12881.t1,CCT11 PF01504,PF00118 PTHR23086,PTHR23086:SF7 - 2.7.1.150 K00921 GO:0016307,GO:0046488,GO:0005524,GO:0044267 AT4G33240.3 FAB1A 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases Cre16.g693203 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - - - - g15616.t1 PF01061,PF00005 PTHR19241 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT4G15215.1 ATPDR13,PDR13 pleiotropic drug resistance 13 Cre01.g012500 PRA1 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n upregulated 7 Prenylated rab acceptor family protein Expressed Protein. Similar to Prenylated Rab Acceptor Protein g310.t1,Cre01.g012500.t1.1,PRA1 PF03208 PTHR19317 KOG3142 - - - AT5G01640.1 PRA1.B5 prenylated RAB acceptor 1.B5 Cre13.g566000 FTL1 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 6 - - g13929.t1,Cre13.g566000.t1.1,FTL1 PF01268 PTHR24508:SF8,PTHR24508 - - - GO:0004329,GO:0005524,GO:0009396 AT1G50480.1 THFS 10-formyltetrahydrofolate synthetase Cre09.g406700 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 M n - 17 - - g10083.t1 PF00082 PTHR10795,PTHR10795:SF75 - - - GO:0004252,GO:0006508 - - - Cre10.g434850 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP n - 10 - - g10724.t1 - - - - - - - - - Cre06.g276700 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 O n - 7 - - g6202.t1,Cre06.g276700.t1.1 PF01546 PTHR11014,PTHR11014:SF27 - - - GO:0008152,GO:0016787 AT5G43600.1 ATAAH-2,UAH ureidoglycolate amidohydrolase Cre06.g311000 FBT2 - 1 5 0.179694499711 1.0 1 5 0.168357281403 1.0 SP Y - 13 Folate transporter Belongs to BT1-family of transporters (also known as FBT) involved in folate/pteridine transport (PMID: 16162503); most closely related to the chloroplast folate transporter At2g32040 g7196.t1 PF03092 PTHR24003:SF331,PTHR24003 - - - - AT2G32040.1 - Major facilitator superfamily protein Cre10.g461500 - 2 21 0.170763989223 1.0 1 22 0.506663823719 1.0 O n - 18 - - g11314.t1,Cre10.g461500.t1.1 PF02656,PF09359 PTHR10783,PTHR10783:SF20 - - - - - - - Cre06.g292750 - 1 24 0.561839758461 1.0 2 23 0.174308846095 1.0 SP n upregulated - - - g6782.t1,Cre06.g292750.t1.1 PF05694 - - - - GO:0008430 - - - Cre09.g387282 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 M n - 3 - - g9582.t1,Cre02.g121700.t1.1 PF04072 - - - - GO:0008168 AT4G02405.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre04.g228300 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - 13 - - g4995.t1 PF00069 PTHR24349:SF116,PTHR24349 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre02.g079450 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 SP n downregulated 7 - - g1451.t1 - - - - - - - - - Cre11.g467670 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 SP n - 9 - - g11600.t2,Cre18.g745350.t2.1, g11600.t1,Cre18.g745350.t1.1 PF05686 PTHR12203 - - - - AT2G45830.1 DTA2 downstream target of AGL15 2 Cre01.g017200 FKB99,FKB24 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O Y - 9 Peptidyl-prolyl cis-trans isomerase, FKBP-type Peptidyl-prolyl cis-trans isomerase, FKBP-type. Contains 2 (or 3?) N-terminal domains similar to FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase); C-terminal TPR repeats; calmodulin-binding domain, nuclear localization signa g408.t1,Cre01.g017200.t1.1,FKB24 PF07719,PF00254 PTHR10516:SF27,PTHR10516 KOG0543 - - GO:0006457 AT3G54010.1 DEI1,PAS1 FKBP-type peptidyl-prolyl cis-trans isomerase family protein Cre09.g388650 CYG29 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - 14 Adenylate/guanylate cyclase C-terminal domain similar to guanylyl cyclase beta-3 [Apis mellifera] g9527.t1 PF00211 PTHR11920:SF124,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre14.g627251 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - - - - g15104.t1 PF01925 PTHR14255 - - - GO:0016021 AT4G21250.1 - Sulfite exporter TauE/SafE family protein Cre04.g216350 CPLD3,AKR7 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O Y - 7 Aldo/keto reductase Aldo/keto reductase. Conserved expressed protein. Previously annotated as CPLD3 g4640.t1,Cre04.g216350.t1.1,AKR7 PF00248 PTHR11732:SF88,PTHR11732 KOG1575 - - GO:0016491,GO:0055114 AT5G53580.1 - NAD(P)-linked oxidoreductase superfamily protein Cre13.g573650 SRS8 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - 12 - - g14103.t1,SRS8 PF00076 PTHR23147 KOG4207 - - GO:0003676 AT3G55460.1 SCL30 SC35-like splicing factor 30 Cre07.g357550 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - 16 - - g8314.t1,Cre07.g357550.t1.1 - - - - - - - - - Cre15.g639550 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 M n - - - - g15413.t2, g15413.t1 - - - - - - - - - Cre03.g150000 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - - - - g3051.t1 - - - - - - - - - Cre06.g307650 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 SP n - 9 - - g7124.t1, g7124.t2 PF03537,PF12138 - - - - - - - - Cre13.g564800 CYG67 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - 16 - - g13895.t1 PF07701,PF00211,PF07700 PTHR11920,PTHR11920:SF120 - - - GO:0004383,GO:0006182,GO:0009190,GO:0016849,GO:0035556,GO:0020037 - - - Cre02.g117050 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - - - - g2423.t2, g2423.t3, g2423.t1 PF07714 PTHR23257,PTHR23257:SF319 KOG1187 - - GO:0004672,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre02.g117250 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - 8 - - g2428.t2, g2428.t1 PF02449 - - - - GO:0004565,GO:0005975,GO:0009341 - - - Cre01.g017100 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 C n upregulated 10 - - g406.t1 - PTHR22753:SF5,PTHR22753 - - - - AT1G54570.1 - Esterase/lipase/thioesterase family protein Cre14.g620250 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - 10 - - g14949.t2, g14949.t1 - - - - - - - - - Cre04.g215550 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - 9 - - g4661.t1,Cre04.g215550.t1.1 - - - - - - - - - Cre13.g572200 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 M n upregulated 5 - - g14071.t1,Cre13.g572200.t1.1 PF03222 - - - - - AT5G19500.1 - Tryptophan/tyrosine permease Cre02.g095099 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - 11 - - g1873.t1,Cre11.g472400.t1.1 PF00069 PTHR24055:SF150,PTHR24055 KOG0984 - - GO:0004672,GO:0005524,GO:0006468 AT3G17750.1 - Protein kinase superfamily protein Cre13.g603650 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - - - - g14554.t1,Cre13.g603650.t1.1 - - - - - - - - - Cre12.g559400 PDE12 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 SP n - 17 3\',5\'-cyclic-nucleotide phosphodiesterase Similar to calcium/calmodulin-dependent 3\',5\'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain g13336.t1,PDE12 PF00233 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre06.g293300 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - 4 - - g6793.t1 PF07714 PTHR23257,PTHR23257:SF372 KOG0581 - - GO:0004672,GO:0006468 AT1G67890.1 - PAS domain-containing protein tyrosine kinase family protein Cre13.g566900 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 O n - 11 - - g13949.t1 PF09103,PF09169 PTHR11289 - - K08775 GO:0000724,GO:0003697,GO:0005634,GO:0006310,GO:0007090 AT5G01630.1 ATBRCA2(V),BRCA2(V),BRCA2B BRCA2-like B Cre03.g173300 - 1 5 0.179694499711 1.0 0 6 1.0 1.0 SP n - 15 - - g3574.t1,Cre03.g173300.t1.1, g3574.t2 PF04488 PTHR12042,PTHR12042:SF4 - - - - AT2G38150.1 - alpha 1,4-glycosyltransferase family protein Cre02.g094700 - 0 78 0.18549787841 1.0 1 77 0.733556257817 1.0 O n upregulated 11 - - g1791.t1,Cre02.g094700.t1.1 - - - - - - - - - Cre10.g458350 SRR16,CHI6 - 2 48 0.677787868568 1.0 3 47 0.192557025572 1.0 SP n - 9 Chitinase-like hydrolase Chitinase-like hydrolase. Scavenger receptor cysteine-rich protein with multiple C-type lectin domains and a glycoside hydrolase family 18 domain. Very large protein. Part of a group of 4 homologous proteins. Previously annotated as SRR16 g11243.t3,CHI6,SRR16, g11243.t2,CHI6,SRR16, g11243.t1,CHI6,SRR16 PF00704,PF00059,PF00530 PTHR11177:SF44,PTHR11177 KOG2806 - - GO:0004553,GO:0005975,GO:0005488,GO:0005044,GO:0016020 AT4G19800.1 - Glycosyl hydrolase family protein with chitinase insertion domain Cre17.g699500 TTL8,TTLL9,FAP267 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 14 Tubulin tyrosine ligase Flagellar Associated Protein with similarity to tubulin tyrosine ligase, found in the flagellar proteome [PMID: 15998802]. Previously annotated as FAP267 g16964.t1,Cre17.g699500.t1.1,FAP267,TTL8 PF03133 PTHR12241,PTHR12241:SF54 KOG2157 - - GO:0004835,GO:0006464 AT1G77550.1 - tubulin-tyrosine ligases;tubulin-tyrosine ligases Cre06.g278174 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 11 - - g6317.t1,Cre13.g597000.t1.1 - - - - - - AT5G64520.2 ATXRCC2,XRCC2 homolog of X-ray repair cross complementing 2 (XRCC2) Cre07.g320050 PTK1 - 0 7 1.0 1.0 1 6 0.193519537077 1.0 SP n downregulated 16 Putative tyrosine kinase Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g7401.t1,PTK1 PF00069 PTHR23257:SF318,PTHR23257 KOG2345 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre03.g200351 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 C n - - - - g4321.t1 - - - - - - - - - Cre09.g402775 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - - - - g10027.t1,Cre02.g140700.t1.1,Cre02.g140700.t1.2 PF02656,PF03105,PF09359 PTHR10783,PTHR10783:SF20 KOG1161 - - - AT4G22990.2 - Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein Cre09.g391282 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 8 - - g9691.t1,Cre02.g126700.t1.1,Cre02.g126700.t1.2 - - - - - - AT5G55500.1 ATXYLT,XYLT beta-1,2-xylosyltransferase Cre10.g433300 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 8 - - g10689.t1 - - - - - - - - - Cre07.g325050 ELG15 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 SP n - 7 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g7509.t1,ELG15 PF03016,PF07974 PTHR11062,PTHR11062:SF14 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre07.g314050 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 SP n - - - - g7267.t1 - - - - - - - - - Cre05.g239800 ARS14 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 SP n - 10 - - g5530.t2,ARS14, g5530.t1,ARS14 PF00884 PTHR10342:SF2,PTHR10342 KOG3731 - - GO:0008152,GO:0008484 - - - Cre10.g443000 ATM3 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 SP n downregulated 16 Half-size ABC transporter, membrane protein Related to the Chlamydomonas Cds1 protein, a mitochondrial half-size ABC transporter involved in cadmium detoxification [PMID: 11267764, PMID: 15710683], and to the S. pombe HMT1, a vacuolar phytochelatin-cadmium transporter. g10896.t1,Cre10.g443000.t1.1,ATM3 PF00664,PF00005 PTHR24221:SF69,PTHR24221 KOG0057 - K05663 GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT5G58270.1 ATATM3,ATM3,STA1 ABC transporter of the mitochondrion 3 Cre12.g508644 HDG1 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 SP n - 7 - - g12383.t1,HDG1 - PTHR10270 - - - - AT5G41410.1 BEL1 POX (plant homeobox) family protein Cre06.g288550 ECP76 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 SP n - 10 76 kDa extracellular polypeptide Extracellular polypeptide Ecp76; induced by sulfur starvation; PMID: 11598240 g6697.t1,Cre06.g288550.t1.1,ECP76 PF06742,PF06863 - - - - - - - - Cre13.g574400 CYG55 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 15 Adenylate/guanylate cyclase Protein with domain similar to Guanylate cyclase soluble, beta-2 chain (GCS-beta-2) [Bos taurus] g14120.t1 PF00211 PTHR11920:SF121,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre10.g428750 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 1 - - g10592.t1 PF05843,PF00575 PTHR23270 KOG1070 - - GO:0005634,GO:0006397,GO:0003723 AT3G11964.1 - RNA binding;RNA binding Cre10.g448850 FAP135,ODA5AK,CAL5 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 C n downregulated 13 Calpain cystein protease and Flagellar Associated Protein Calpain cystein protease and Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]. Previously annotated as FAP135 g11034.t1,Cre10.g448850.t1.1,CAL5,FAP135 PF00648,PF01067 PTHR10183,PTHR10183:SF154 KOG0045 - - GO:0004198,GO:0005622,GO:0006508 AT1G55350.5 ATDEK1,DEK1,EMB1275,EMB80 calpain-type cysteine protease family Cre13.g577550 DDB2 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 16 UV-damaged DNA binding complex subunit 2 protein Homologous to eukaryotic UV-DDB2(UV-damaged DNA binding complex subunit 2 protein); Nucleus g14191.t1,Cre13.g577550.t1.1,DDB2 PF00400 PTHR15169 - - K10140 - AT5G58760.1 DDB2 damaged DNA binding 2 Cre13.g567200 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 18 - - g13957.t2, g13957.t1 PF00069 PTHR23257:SF292,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre07.g351825 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 SP n - 5 - - g8184.t1 PF00069,PF07714 PTHR23257:SF339,PTHR23257 KOG1187 - - GO:0004672,GO:0005524,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre16.g657979 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 15 - - g15899.t1, g15899.t2,Cre16.g657979.t1.1 - - KOG1003 - - - - - - Cre02.g091950 CYG45 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 SP n - - Adenylate/guanylate cyclase Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g1722.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre12.g525050 SMC6A - 0 7 1.0 1.0 1 6 0.193519537077 1.0 O n downregulated 10 Structural Maintenance of Chromosomes protein Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation. g12924.t1 PF02463 PTHR19306,PTHR19306:SF2 KOG0250 - - GO:0005524,GO:0005694 AT5G07660.1 SMC6A structural maintenance of chromosomes 6A Cre07.g325721 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - - - - g7535.t1,Cre26.g772386.t1.1,Cre26.g772386.t1.2 - - - - - - AT1G16770.1 - - Cre03.g200050 CAL1 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 10 - - g4326.t1,Cre03.g200050.t1.1,CAL1 - PTHR10183,PTHR10183:SF144 KOG0037 - - - AT3G10300.3 - Calcium-binding EF-hand family protein Cre03.g174200 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 8 - - g3594.t1 PF00651 - KOG0487 - - GO:0005515 - - - Cre01.g053250 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 M n - 9 - - g1176.t1 - PTHR12706 KOG1513 - - - AT1G79350.1 EMB1135 RING/FYVE/PHD zinc finger superfamily protein Cre16.g650750 FAP268 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 C n - 14 Flagella Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g15744.t1 PF00036 PTHR10891,PTHR10891:SF44 KOG0027 - - - AT4G03290.1 - EF hand calcium-binding protein family Cre01.g045700 CAT2 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 SP n - 11 Catalase/peroxidase Haem-containing catalase-peroxidases, a bifunctional antioxidant enzyme that exhibit both catalase (EC:1.11.1.6) and peroxidase (EC:1.11.1.7) activity; functions as an oligomer; the primary structure of the subunit can be divided into two similar halves, g1024.t1,CAT2 PF00141 - - - - GO:0004601,GO:0006979,GO:0020037,GO:0055114 AT4G35970.1 APX5 ascorbate peroxidase 5 Cre03.g170150 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 10 - - g3503.t1 PF00168,PF07002 PTHR10857 KOG1327 - - GO:0005515 AT5G61910.4 - DCD (Development and Cell Death) domain protein Cre13.g571520 ANK12 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 C n - - - - g14053.t1,Cre13.g571550.t1.3,ANK12 PF00023 PTHR24188,PTHR24188:SF302 KOG4412 - - GO:0005515 AT4G19150.1 - Ankyrin repeat family protein Cre01.g025767 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 SP n - 11 - - g592.t1,Cre01.g025767.t1.1 PF08457 - - - - - - - - Cre12.g552900 DOI1 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 M n - 14 - - g13480.t1,Cre12.g552900.t1.1 PF00400 PTHR22847 KOG0266 - - - AT3G49660.1 - Transducin/WD40 repeat-like superfamily protein Cre06.g254917 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 SP n - - - - g5732.t2, g5732.t1 - PTHR24420:SF490,PTHR24420 KOG4462 - - - - - - Cre14.g611250 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 11 - - g14734.t1,Cre14.g611250.t1.1 PF06565 PTHR12086 KOG0043 - - - - - - Cre07.g327100 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 C n - 8 - - g7607.t1,Cre07.g327100.t1.1 PF01569 - - - - GO:0003824,GO:0016020 - - - Cre13.g592150 SPL28,PRP28 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 C n - - DEAD/DEAH box helicase, possible nuclear pre-mRNA splicing factor DEAD/DEAH box helicase, possible nuclear pre-mRNA splicing factor. Similar to yeast pre-mRNA-splicing ATP-dependent RNA helicase PRP28 (Helicase CA8)gi|1172596|sp|P23394|. Previously annotated as PRP28 g14517.t1,Cre13.g592150.t1.1,PRP28,SPL28 PF00271,PF00270 PTHR24031,PTHR24031:SF47 KOG0333 3.6.4.13 K12858 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT2G33730.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre01.g004157 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 C n downregulated 11 - - g103.t1,Cre01.g004157.t1.1 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre16.g650350 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 4 - - g15734.t1 PF03457 - - - - - - - - Cre02.g092500 UPF1 - 0 7 1.0 1.0 1 6 0.193519537077 1.0 O n - - UPF1-like RNA helicase, NMD protein Putative regulator of nonsense transcripts 1 (UPF1). Part of a post-splicing multiprotein complex involved in both mRNA nuclear export and mRNA surveillance. Cytoplasmic localization. High homology to Arabidopsis thaliana accession. g1734.t1,UPF1 PF09416,PF04851 PTHR10887:SF26,PTHR10887 KOG1802 3.6.4.- K14326 GO:0000184,GO:0003677,GO:0004386,GO:0005524,GO:0005737,GO:0008270,GO:0016787 AT5G47010.1 ATUPF1,LBA1,UPF1 RNA helicase, putative Cre04.g233202 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 SP n downregulated 14 - - g5070.t1,Cre32.g780800.t1.1,Cre32.g780800.t1.2 - - - - - - - - - Cre06.g257600 FA1 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 11 Flagellar Autonomy Protein Flagellar autotomy protein, required for pH-induced excision of flagella (gi:7671199); PMID: 10806107 g5790.t2, g5790.t1 - PTHR24106 KOG4308 - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre09.g417250 ELG27 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 8 Exostosin-like glycosyltransferase Seems to belong to the family of exostosin-like glycosyltransferases g10329.t1,ELG27 PF03016,PF07974 PTHR11062,PTHR11062:SF12 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre03.g179961 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 M n - 10 - - g3729.t1 PF03104,PF08490 PTHR10670 KOG1798 2.7.7.7 K02324 GO:0003887,GO:0006260,GO:0005634,GO:0008270 AT1G08260.1 ABO4,EMB142,EMB2284,EMB529,ESD7,POL2A,TIL1 DNA polymerase epsilon catalytic subunit Cre01.g012000 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 M n - 9 - - g297.t1 - - - - - - - - - Cre14.g624400 FAP99 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 M n - 13 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g15043.t1,Cre14.g624400.t1.1 - - - - - - - - - Cre14.g628533 CYG3 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 C n - 11 - - g15139.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre10.g433350 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 17 - - g10690.t1 PF03110 - - - - GO:0003677,GO:0005634 AT2G47070.1 SPL1 squamosa promoter binding protein-like 1 Cre12.g522200 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 13 - - g12861.t1,Cre12.g522200.t1.1 - - - - - - - - - Cre03.g152200 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 6 - - g3097.t1 - - - - - - - - - Cre03.g198800 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 O n - 16 - - g4354.t1,Cre03.g198800.t1.1 PF00249 PTHR25040:SF29,PTHR25040 - - - - AT5G61620.1 - myb-like transcription factor family protein Cre12.g532500 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 C n - 13 - - g13102.t1,Cre12.g532500.t1.1 PF01758 PTHR10361,PTHR10361:SF0 KOG2718 - K03453 GO:0006814,GO:0008508,GO:0016020 AT1G78560.1 - Sodium Bile acid symporter family Cre17.g723050 - 1 6 0.206331346417 1.0 1 6 0.193519537077 1.0 SP n - 17 - - g17491.t1 PF00743 PTHR23023:SF18,PTHR23023 - - - GO:0004499,GO:0050660,GO:0050661,GO:0055114 AT1G19250.1 FMO1 flavin-dependent monooxygenase 1 Cre02.g093750 NRX2 - 4 84 0.536535407069 1.0 5 83 0.195375164836 1.0 O n upregulated 2 Nucleoredoxin 2 Nucleoredoxin, nuclear thioredoxin-like protein, contains two thioredoxin motifs with a WCPPC active site in each motif. g1771.t1,Cre02.g093750.t1.1,NRX2 PF08534,PF00578 PTHR13871,PTHR13871:SF19 KOG2501 - - GO:0016491,GO:0016209 AT1G60420.1 - DC1 domain-containing protein Cre04.g214200 - 2 25 0.21828547618 1.0 2 25 0.196298045518 1.0 O n - 5 - - g4693.t1 - - - - - - - - - Cre01.g052750 - 2 24 0.20627526044 1.0 1 25 0.550087053255 1.0 SP n - 16 - - g1167.t1 PF06011 - KOG3903 - - - - - - Cre02.g117813 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 M n - 15 - - g2444.t1,Cre02.g117813.t1.1 PF00069 PTHR26392,PTHR26392:SF154 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT3G24715.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre03.g162333 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 SP n - 8 - - g3327.t1 PF01061,PF00005 PTHR19241 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT4G15236.1 - ABC-2 and Plant PDR ABC-type transporter family protein Cre08.g382250 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 O n - 15 - - g8993.t1,Cre08.g382250.t1.1 - PTHR11584,PTHR11584:SF273 - - - - - - - Cre17.g746897 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 M n - 13 - - g18054.t2,Cre20.g758300.t1.1, g18054.t1,Cre20.g758300.t2.1 - - - - - - AT2G25605.1 - - Cre03.g144144 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 M n upregulated 2 - - g2870.t1,Cre01.g056600.t1.1, g2870.t2,Cre01.g056600.t2.1 - - - - - - - - - Cre09.g400886 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 O n - 18 - - g9976.t1,Cre02.g138400.t1.1 PF00069,PF07714 PTHR23257:SF355,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre17.g746597 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 SP n - 9 - - g18048.t1,Cre20.g758550.t2.1, g18048.t2,Cre20.g758550.t1.1 PF00450 PTHR11802,PTHR11802:SF12 KOG1283, KOG1282 3.4.16.5 K13289 GO:0004185,GO:0006508 AT4G12910.1 scpl20 serine carboxypeptidase-like 20 Cre03.g192550 RAD50 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 O n - 8 DNA repair protein Part of MRE11-RAD50-NBS1 complex. Functions in DNA damage repair and signaling. g3985.t1,RAD50 PF02463 PTHR18867 KOG0962 3.6.-.- K10866 GO:0005524,GO:0005694 AT2G31970.1 ATRAD50,RAD50 DNA repair-recombination protein (RAD50) Cre06.g299150 PHC9 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 M n - 8 Cell wall protein pherophorin-C9 Pherophorin-C9 (PHC9) [PMID: 16367971]; very similar to extracellular matrix protein (cell wall protein) pherophorin-C1 [Genbank entry DQ196107], which belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich ( g6920.t1,PHC9 PF12499 - - - - - - - - Cre36.g759647 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 C n - 8 - - g18366.t1,Cre05.g230200.t1.1,Cre05.g230200.t1.2 PF05116 - - - - - AT2G35840.1 - Sucrose-6F-phosphate phosphohydrolase family protein Cre10.g429350 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 O n - 15 - - g10606.t1,Cre10.g429350.t1.1 PF05721 - - - - - - - - Cre05.g232300 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 M n downregulated 16 - - g5132.t1 PF01753 - - - - GO:0008270 - - - Cre03.g159150 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 M n - - - - g3259.t1 PF00069 PTHR23257:SF303,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT4G31170.1 - Protein kinase superfamily protein Cre03.g185350 GTR9,GTR15,BGS3 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 M n - 10 1,3-beta-D-glucan synthase 1,3-beta-D-glucan synthase and glycosyl transferase. Previously annotated as GTR9 and GTR15 g3841.t1,BGS3,GTR15,GTR9 PF02364 PTHR12741,PTHR12741:SF4 - - - GO:0000148,GO:0003843,GO:0006075,GO:0016020 AT2G13680.1 ATGSL02,CALS5,GLS2 callose synthase 5 Cre03.g200400 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 O n - 11 - - g4319.t1,Cre03.g200400.t1.1 PF00657 - - - - GO:0006629,GO:0016788 - - - Cre07.g343900 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 C n - - - - g8001.t1,Cre07.g343900.t1.1 - - - - - - - - - Cre24.g755597 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 C n upregulated 18 - - g18260.t1,Cre05.g231450.t1.1,Cre05.g231450.t1.2 PF00355 PTHR21266,PTHR21266:SF19 - - - GO:0016491,GO:0051537,GO:0055114 AT1G44446.3 ATCAO,CAO,CH1 Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain Cre07.g332300 1,GWD2 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 C n - 16 R1 Protein, alpha-glucan water dikinase Phosphorylates the C-3 and C-6 positions of alpha glucans with the beta phosphate of ATP g7731.t1,Cre07.g332300.t1.1,1,GWD2 PF01326 PTHR22931,PTHR22931:SF16 - - - GO:0005524,GO:0016301,GO:0016310 AT4G24450.1 ATGWD2,GWD3,PWD phosphoglucan, water dikinase Cre16.g682350 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 O n upregulated - - - g16455.t2, g16455.t1 PF01485 PTHR11685,PTHR11685:SF10 KOG1815 - - GO:0008270 AT1G65430.1 ARI8,ATARI8 IBR domain-containing protein Cre15.g641750 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 SP n upregulated 2 - - g15473.t1 PF05495 - - - - GO:0008270 AT1G74770.1 - zinc ion binding Cre06.g308650 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 O n - 13 - - g7144.t1 - - - - - - - - - Cre13.g607450 DAK1 - 1 6 0.206331346417 1.0 0 7 1.0 1.0 O n - 6 Dihydroxyacetone kinase Contains Pfam domains, PF02733: DAK1 domain and PF02734: DAK2 domain g14645.t1,DAK1 PF02733,PF02734 PTHR10854 KOG2426 - - GO:0004371,GO:0006071 AT3G17770.1 - Dihydroxyacetone kinase Cre12.g544114 CYN20-6 - 2 26 0.230352307288 1.0 2 26 0.207416645509 1.0 C n - 7 - - g13686.t1 PF00160 PTHR11071,PTHR11071:SF140 KOG0880 5.2.1.8 K03768 GO:0003755,GO:0006457 AT5G13120.1 ATCYP20-2,CYP20-2 cyclophilin 20-2 Cre06.g292000 - 0 8 1.0 1.0 1 7 0.217920002866 1.0 O n - 8 - - g6765.t1 PF03127,PF00790 PTHR13856,PTHR13856:SF27 - - - GO:0005622,GO:0006886 AT4G32760.2 - ENTH/VHS/GAT family protein Cre03.g176325 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 4 - - g3642.t1,Cre03.g176325.t1.1 - - - - - - - - - Cre12.g526883 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 SP n - - - - g12982.t2,Cre12.g526900.t2.1, g12982.t1,Cre12.g526900.t1.2 - - - - - - AT5G60580.2, AT5G60580.1 - RING/U-box superfamily protein Cre10.g424300 KIN12-2,KIN16-1 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 13 - - g10491.t1,Cre10.g424300.t1.1,KIN12-2,KIN16-1 PF00225 PTHR24115:SF360,PTHR24115 - - - GO:0003777,GO:0005524,GO:0007018 AT3G44050.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre04.g220350 ATPVA3,ATPvA3 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 8 Vacuolar ATP synthase subunit A Putative vacuolar H+-ATPase V0 sector, subunit A; vacuolar proton translocating ATPase subunit A (ATPvA) g4806.t1,ATPVA3,ATPvA3, g4806.t2,Cre04.g220350.t1.1,ATPVA3,ATPvA3 PF01496 PTHR11629,PTHR11629:SF11 KOG2189 3.6.3.14 K02154 GO:0015078,GO:0015991,GO:0033177 AT4G39080.1 VHA-A3 vacuolar proton ATPase A3 Cre09.g399663 FXL7 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - - FixL-like PAS domain protein FixL like homolog 7 (FXL). PAS region shows high identity to Rhizobial FixL proteins. g9925.t2,Cre02.g136950.t2.1,FXL7, g9925.t1,Cre02.g136950.t1.1,FXL7 PF00989 PTHR10919:SF179,PTHR10919 - - - GO:0006355 - - - Cre01.g023250 - 0 8 1.0 1.0 1 7 0.217920002866 1.0 O n - 7 - - g536.t1 - - - - - - - - - Cre16.g655200 PTB6 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 SP n - 17 Sodium/phosphate symporter PTB6b Putative phosphate transporter homolog type B6, splice variant b, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters. The 5\' end of this splice variant is supported by EST evidence. g15838.t2,Cre16.g655200.t1.1,PTB6, g15838.t1,PTB6 PF01384 PTHR11101:SF7,PTHR11101 KOG2493 - - GO:0005315,GO:0006817,GO:0016020 AT3G26570.2 ORF02,PHT2;1 phosphate transporter 2;1 Cre14.g616350 FAS4 - 0 8 1.0 1.0 1 7 0.217920002866 1.0 SP n - 11 Fasciclin-like protein Protein contains the fasciclin FAS1 domain (= BIgH3 domain), which is an extracellular module of about 140 amino acid residues; it has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals g14848.t1,Cre14.g616350.t1.1,FAS4 PF02469 - - - - - - - - Cre12.g486650 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n downregulated 13 - - g12259.t1,Cre12.g486650.t1.1 - - - - - - - - - Cre03.g171250 - 0 8 1.0 1.0 1 7 0.217920002866 1.0 O n - - - - g3529.t2, g3529.t1,Cre03.g171250.t1.1 - - - - - - - - - Cre04.g230928 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 7 - - g5046.t1,Cre32.g781800.t1.1 PF00085,PF04777 PTHR22897,PTHR22897:SF3 - - - GO:0045454,GO:0016972,GO:0055114 AT2G01270.1 AtQSOX2,QSOX2 quiescin-sulfhydryl oxidase 2 Cre02.g077800 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 SP n - 17 - - g1404.t1,Cre02.g077800.t1.1 - - - - - - - - - Cre17.g718900 FAP88 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g17397.t1,Cre17.g718900.t1.1 - - - - - - - - - Cre01.g010050 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 17 - - g253.t1 - - - - - - - - - Cre12.g560050 ERM11,ERM12,RVT1 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 SP n - - - - g13318.t1,ERM11,ERM12,RVT1 PF03372,PF00078,PF02714 PTHR13078,PTHR13078:SF14 KOG1134 - - GO:0003723,GO:0003964,GO:0006278,GO:0016020 AT3G21620.1 - ERD (early-responsive to dehydration stress) family protein Cre11.g478456 - 0 8 1.0 1.0 1 7 0.217920002866 1.0 SP n - 16 - - g11879.t1,Cre11.g478456.t1.1 - - - - - - AT3G03305.1 - Calcineurin-like metallo-phosphoesterase superfamily protein Cre10.g422750 MOT10 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 16 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g10459.t1,MOT10 PF00023,PF00520 PTHR24198 KOG4214 - - GO:0005515,GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT3G04710.1 - ankyrin repeat family protein Cre13.g575200 PPP42 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 11 - - g14137.t1,PPP42 PF00149 PTHR24980,PTHR24980:SF23 KOG0374 - - GO:0016787 AT1G03445.1 BSU1 Serine/threonine protein phosphatase family protein Cre17.g744997 - 0 8 1.0 1.0 1 7 0.217920002866 1.0 M Y - 1 - - g18016.t1,Cre20.g759750.t1.1 PF07992 PTHR10617,PTHR10617:SF52 - - - - AT4G30720.1 - FAD/NAD(P)-binding oxidoreductase family protein Cre14.g631250 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 M n - 18 - - g15214.t1 - PTHR12832,PTHR12832:SF2 - - - - AT1G22930.1 - T-complex protein 11 Cre06.g263650 - 0 8 1.0 1.0 1 7 0.217920002866 1.0 C n - 16 - - g5924.t1 PF08372 - - - - - AT3G61300.1 - C2 calcium/lipid-binding plant phosphoribosyltransferase family protein Cre03.g205050 DGTT4,CGLD24,DOT1 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 SP Y - 5 Diacylglycerol O-acyltransferase Diacylglycerol O-acyltransferase. Green-lineage-and-diatoms conserved expressed protein. Previously annotated as CGLD24 g4212.t1,Cre03.g205050.t1.1,CGLD24,DOT1 PF03982 PTHR12317 KOG0831 2.3.1.22 K14457 GO:0016747 AT3G51520.1 - diacylglycerol acyltransferase family Cre17.g730950 KIN2-2,KHP1,FLA10 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 14 Kinesin motor protein, kinesin-2 (KRP85/95) family Kinesin motor protein, kinesin-2 (KRP85/95) family. Motor subunit of heterotrimeric kinesin-II complex that drives anterograde intraflagellar transport. Previously annotated as FLA10. Also known as KHP1. Upregulated upon deflagellation g17664.t1,Cre17.g730950.t1.1,FLA10,KHP1,KIN2-2 PF00225 PTHR24115:SF159,PTHR24115 KOG4280 - K10394 GO:0003777,GO:0005524,GO:0007018 AT3G17360.1 POK1 phragmoplast orienting kinesin 1 Cre06.g266850 - 0 8 1.0 1.0 1 7 0.217920002866 1.0 O n downregulated 13 - - g5989.t1 PF00320 PTHR10071:SF54,PTHR10071 - - - GO:0003700,GO:0006355,GO:0008270,GO:0043565 AT4G36620.1 GATA19 GATA transcription factor 19 Cre12.g552750 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n upregulated 2 - - g13483.t1,Cre12.g552750.t1.1 - - - - - - - - - Cre06.g278116 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 C n - 8 - - g6259.t1,Cre13.g594300.t1.1,Cre13.g594300.t1.2 - - - - - - AT3G27610.1 - Nucleotidylyl transferase superfamily protein Cre14.g612633 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 18 - - g14763.t1 PF12499 - - - - - - - - Cre16.g652400 FAL18 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 15 Similar to Flagellar Associated Protein FAP183 Similar to Flagellar Associated Protein FAP183 that is found in the flagellar proteome [PMID: 15998802]; note that FAP243 is likely a part of FAP183. Thie gene model overlaps with FAP183 from v3 g15779.t1,Cre16.g652400.t1.1,FAL18 - PTHR10891,PTHR10891:SF44 KOG0027 - - - - - - Cre07.g355466 AGE2 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 M n - 15 - - g8266.t1,AGE2 PF00730 PTHR10359:SF3,PTHR10359 - - - GO:0006284 AT3G10010.1 DML2 demeter-like 2 Cre12.g558250 TML1,SNR7 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 9 Regulatory R-SNARE protein, Tomsyn/Sro family (R.Reg) Regulatory R-SNARE protein, Tomsyn/Sro family (R.Reg). Conserved Protein. Similar to At5g05570/Tomosyn, proteins that contain a C-terminal R-SNARE domain, but acts as regulator of SNARE assembly rather than as part of a SNARE complex. Class R.Reg SNARE g13365.t1,SNR7,TML1 PF00957 PTHR10241 KOG0860 - - GO:0016021,GO:0016192 AT5G05570.2 - transducin family protein / WD-40 repeat family protein Cre01.g011800 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 M n - 18 - - g293.t1 PF00069 PTHR23257:SF290,PTHR23257 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre04.g217954 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 C n - 13 - - g4585.t1,Cre03.g209150.t1.1 PF00689,PF00702,PF00690,PF08282,PF00122 PTHR24093 KOG0202 - - GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT4G29900.1 ACA10,ATACA10,CIF1 autoinhibited Ca(2+)-ATPase 10 Cre09.g392050 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 C n - 16 - - g9451.t1, g9451.t2 - - - - - - - - - Cre03.g199350 SRH9 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O Y - 10 - - g4341.t1,SRH9 PF00176,PF00271 PTHR10799,PTHR10799:SF43 KOG1000 3.6.4.12 K14440 GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT1G48310.1 CHA18,CHR18 chromatin remodeling factor18 Cre11.g467656 - 0 8 1.0 1.0 1 7 0.217920002866 1.0 SP n - - - - g11586.t1,Cre18.g745950.t1.1,Cre18.g745950.t1.2 - - - - - - - - - Cre17.g727900 CRC1 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 16 - - g17596.t1,CRC1 - PTHR10891 KOG0027 - - - AT3G50360.1 ATCEN2,CEN1,CEN2 centrin2 Cre17.g718100 - 0 8 1.0 1.0 1 7 0.217920002866 1.0 O n - - - - g17379.t1,Cre17.g718100.t1.1, g17379.t2 PF03765,PF00650 PTHR23324,PTHR23324:SF18 KOG1471 - - - AT3G24840.1 - Sec14p-like phosphatidylinositol transfer family protein Cre07.g328500 ARS17 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 11 - - g7641.t1,ARS17 PF00884 PTHR10342:SF2,PTHR10342 - - - GO:0008152,GO:0008484 - - - Cre13.g592050 DAL1 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 SP n - 9 Allantoinase - g14515.t1,Cre13.g592050.t1.1,DAL1 PF01979 PTHR11647,PTHR11647:SF4 KOG2584 3.5.2.5 K01466 GO:0016787 AT4G04955.1 ALN,ATALN allantoinase Cre17.g701250 FAP59 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 16 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g17002.t1,Cre17.g701250.t1.1 - PTHR18962 - - - - - - - Cre05.g234400 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - - - - g5085.t1 PF01061,PF00005 PTHR19241,PTHR19241:SF91 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT5G60740.1 - ABC transporter family protein Cre12.g561550 CDS1 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 SP n - 8 Mitochondrial half-size ABC transporter, membrane protein Half-size ABC transporter [AAQ19847], related to mitochondrial A. thaliana ATM3, yeast ATM1, human ABC7, and vacuolar S. pombe HMT1. Protein localized in the mitochondria and involved in cadmium detoxification in C. reinhardtii. Previously annotated as C g13286.t1,Cre12.g561550.t1.1,CDS1 PF00664,PF00005 PTHR24221:SF69,PTHR24221 KOG0056 - K05663 GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT5G58270.1 ATATM3,ATM3,STA1 ABC transporter of the mitochondrion 3 Cre12.g505350 ACA2 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n downregulated 15 P-type ATPase/cation transporter, plasma membrane P-type ATPase/cation transporter, plasma membrane. Related to plant potential calcium-transporting ATPase 9, plasma membrane-type (Ca(2+)-ATPase isoform 9); found in the flagellar proteome [PMID: 15998802]. Probably calcium-transporting. May be a phosp g12460.t1,Cre12.g505350.t1.1,ACA2 PF00689,PF00702,PF00690,PF00122 PTHR24093,PTHR24093:SF170 KOG0204 3.6.3.8 K01537 GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT3G57330.1 ACA11 autoinhibited Ca2+-ATPase 11 Cre13.g582270 FFT3 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - - - - g14297.t3,FFT3, g14297.t1,FFT3, g14297.t2,FFT3 PF00251 - - - - - AT1G62660.1 - Glycosyl hydrolases family 32 protein Cre13.g588600 KIN1-1 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 10 - - g14439.t1,KIN1-1 PF00225 PTHR24115 KOG0240 - - GO:0003777,GO:0005524,GO:0007018 AT1G12430.2 ARK3,PAK armadillo repeat kinesin 3 Cre07.g344702 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 11 - - g8021.t1 - - - - - - - - - Cre01.g031500 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 SP n - 8 - - g712.t1,Cre01.g031500.t1.1 PF00394,PF07731,PF07732 PTHR11709,PTHR11709:SF15 KOG1263 - - GO:0016491,GO:0055114,GO:0005507 AT4G39830.1 - Cupredoxin superfamily protein Cre08.g361000 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 SP n - 8 - - g8453.t2, g8453.t1 - - - - - - AT5G05310.3 - TLC ATP/ADP transporter Cre02.g114100 PDE22 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 SP n upregulated 5 3\',5\'-cyclic-nucleotide phosphodiesterase Calcium/calmodulin-dependent 3\',5\'-cyclic nucleotide phosphodiesterase. Similar to calcium/calmodulin-dependent 3\',5\'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus g2356.t1,PDE22 PF00233 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre11.g467660 ELG17 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 SP n - 9 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g11590.t1,Cre18.g745800.t1.1,ELG17 PF03016 PTHR11062,PTHR11062:SF12 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre07.g341900 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 O n - 6 - - g7950.t2, g7950.t1 - - - - - - - - - Cre10.g452250 - 0 8 1.0 1.0 1 7 0.217920002866 1.0 M n - 8 - - g11109.t1 - - - - - - - - - Cre06.g278245 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 C n upregulated 6 Pheophorbide a oxygenase, Rieske iron-sulfur cluster protein Rieske-type 2Fe-2S non-heme iron-binding protein with mononuclear-binding site and conserved CxxC domain at the C-terminus. TargetP prediction is chloroplast (0.895). Related to Tic55 (PMID: 9405363) and other non-heme Rieske proteins (PAO, Ptc52, CAO; PM g6387.t1,Cre13.g600650.t1.1,Cre13.g600650.t1.2 PF08417,PF00355 PTHR21266,PTHR21266:SF3 - 1.14.12.20 K13071 GO:0010277,GO:0055114,GO:0016491,GO:0051537 AT3G44880.1 ACD1,LLS1,PAO Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain Cre01.g012750 KCN7 - 0 8 1.0 1.0 1 7 0.217920002866 1.0 O n - 18 - - g315.t1,KCN7 PF00023,PF00520 PTHR10217:SF394,PTHR10217 KOG4214 - - GO:0005515,GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT5G37500.1 GORK gated outwardly-rectifying K+ channel Cre01.g033950 EXN2 - 1 7 0.232102739782 1.0 1 7 0.217920002866 1.0 C n - 9 - - g766.t1,EXN2 PF06839,PF00929 PTHR23044 KOG0542 - - GO:0008270 AT3G15140.1 - Polynucleotidyl transferase, ribonuclease H-like superfamily protein Cre06.g278107 - 3 199 0.226927103955 1.0 3 199 0.297621458639 1.0 C n upregulated 15 - - g6250.t2,Cre13.g593850.t1.1, g6250.t1,Cre13.g593850.t2.1 - - - - - - - - - Cre17.g728250 - 1 29 1.0 1.0 2 28 0.229827763922 1.0 O n - 11 - - g17603.t1 - PTHR16166,PTHR16166:SF68 - - - - AT1G48090.1 - calcium-dependent lipid-binding family protein Cre10.g451600 - 2 26 0.230352307288 1.0 1 27 0.576889792283 1.0 C n - 18 - - g11096.t1, g11096.t3, g11096.t2 PF00704,PF00059, PF00059 PTHR11177:SF44,PTHR11177 KOG2806, KOG4462 - - GO:0004553,GO:0005975,GO:0005488, GO:0005488 AT4G19800.1 - Glycosyl hydrolase family protein with chitinase insertion domain Cre03.g201850 SRH10 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 C n - 4 SNF-related DNA/RNA helicase SNF-related DNA/RNA helicase, identified as ChromDB CHR3412 g4285.t1,SRH10 PF00176,PF00271 PTHR10799,PTHR10799:SF208 KOG0387 - - GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT3G19210.1 ATRAD54,CHR25,RAD54 homolog of RAD54 Cre10.g426152 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 O n downregulated 17 - - g10530.t1 PF01053 PTHR11808,PTHR11808:SF9 KOG0053 4.4.1.11 K01761 GO:0006520,GO:0030170 AT1G64660.1 ATMGL,MGL methionine gamma-lyase Cre13.g581000 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 O n - 7 - - g14271.t1, g14271.t2 PF05686 PTHR12203 - - - - AT1G63420.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre13.g605850 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 C n - 17 - - g14611.t1 - - - - - - - - - Cre10.g456150 HLD3 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 O n - 6 - - g11192.t1,Cre10.g456150.t1.1,HLD3 PF00561 PTHR10992,PTHR10992:SF20 KOG1454 - - - AT4G36530.2 - alpha/beta-Hydrolases superfamily protein Cre14.g630000 KIR2 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 C n - 17 Ketoacid isomerase-like protein Related to a series of bacterial genes among which is a putative ketosteroid isomerase-related protein of Ralstonia; however, it is impossible to find a similarity with the well-characterized delta5-3-ketosteroid isomerase of Pseudomonas putida or Comamon g15172.t1,Cre14.g630000.t1.1,KIR2 - - - - - - - - - Cre11.g468353 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 C n - 15 - - g11751.t1,Cre43.g787450.t1.1,Cre43.g787450.t1.2 PF00520 PTHR11537,PTHR11537:SF96 - - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 - - - Cre02.g095068 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 C n - - - - g1842.t1 PF10162 PTHR15535,PTHR15535:SF1 KOG1217 - - - - - - Cre08.g360400 ERM1 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 SP n downregulated 15 ERD4-related membrane protein Protein with DUF221 domain; probably a transmembrane protein; the DUF221 domain is of unknown function, but is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration) and related proteins g8439.t1,ERM1 PF02714 PTHR13018:SF5,PTHR13018 - - - GO:0016020 AT4G02900.1 - ERD (early-responsive to dehydration stress) family protein Cre11.g479416 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 O n - - - - g11902.t1 - - - - - - - - - Cre14.g615700 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 C n - - - - g14834.t1 - - - - - - - - - Cre11.g480400 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 SP n - - - - g11926.t1 PF12499 - - - - - - - - Cre06.g290550 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 O n - - - - g6739.t1 - - - - - - - - - Cre10.g453900 CYN71 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 O n - - Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID:15047905]; similar to At3g44600 (AtCYP71) g11146.t1,Cre10.g453900.t1.1 PF00400,PF00160 PTHR11071,PTHR11071:SF40 KOG0882 5.2.1.8 K12736 GO:0003755,GO:0006457 AT3G44600.1 CYP71 cyclophilin71 Cre14.g619500 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 M n - 13 - - g14928.t1 - - - - - - - - - Cre06.g283900 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 O n upregulated 2 - - g6601.t1,Cre06.g283900.t1.1 PF04819 PTHR16007,PTHR16007:SF5 - - - - AT1G32120.1 - - Cre10.g432301 - 1 7 0.232102739782 1.0 0 8 1.0 1.0 C n - 13 - - g10668.t1 - - KOG0993 - - - - - - Cre07.g336650 MLH3 - 0 9 1.0 1.0 1 8 0.241581756498 1.0 O n - 11 - - g7834.t2,MLH3, g7834.t1,MLH3 PF02518,PF08676 PTHR10073,PTHR10073:SF7 - - K08739 GO:0005524,GO:0006298,GO:0030983 AT4G35520.1 ATMLH3,MLH3 MUTL protein homolog 3 Cre12.g551100 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 O n upregulated 2 - - g13523.t1,Cre12.g551100.t1.1 PF07172 - - - - - AT2G44870.1 - - Cre12.g545752 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 SP n - - - - g13641.t1 - - - - - - - - - Cre06.g282000 SSS3,STA3 - 0 9 1.0 1.0 1 8 0.241581756498 1.0 C n - 6 Soluble starch synthase III Pfam07036, SSIII, Starch synthase III ADP-glucose alpha-1,4 glucane alpha-4-glucanotransferase. This family represents a conserved region approximately 160 residues long that is repeated multiple times in plant starch synthase III (EC:2.4.1.21). Starch sy g6559.t1,SSS3, g6559.t2,SSS3 PF03423,PF00534,PF08323 PTHR12526,PTHR12526:SF17 - - - GO:0009058 AT1G11720.2 ATSS3,SS3 starch synthase 3 Cre02.g095137 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 C n downregulated 11 Pyruvate-ferredoxin oxidoreductase Pyruvate-ferredoxin oxidoreductase. COG0674, PorA, Pyruvate:ferredoxin oxidoreductase; pfam01855, Pyruvate flavodoxin/ferredoxin oxidoreductase (= NIFJ), thiamine diP-binding domain suggests it requires thiamine pyrophosphate (TPP) as a co-factor. Previ g1910.t1,Cre11.g473950.t2.1, g1910.t2,Cre11.g473950.t1.1,Cre11.g473950.t1.2 PF01558,PF02775,PF01855,PF10371 PTHR19384,PTHR19384:SF15 - - - GO:0016903,GO:0055114,GO:0003824,GO:0030976,GO:0016491 - - - Cre01.g021500 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 SP n - 9 - - g498.t1 PF04515 PTHR12385,PTHR12385:SF22 KOG1362 - - - AT3G15380.1 - Plasma-membrane choline transporter family protein Cre17.g709900 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 M n - 7 - - g17194.t2, g17194.t1 PF00069 PTHR23257:SF337,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre12.g537150 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 SP n - - - - g13208.t1,Cre12.g537150.t1.1 - - - - - - - - - Cre01.g018350 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 O n - 17 - - g433.t1,Cre01.g018350.t1.1 - - - - - - - - - Cre12.g553850 TUL1 - 0 9 1.0 1.0 1 8 0.241581756498 1.0 C n - - Tubulin-like protein Contains conserved tubulin site g13456.t1,TUL1 - - - - - - - - - Cre09.g388875 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 SP n - - - - g9626.t1,Cre02.g123800.t1.1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre01.g029250 AAH1 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 M n downregulated 18 Aromatic amino acid hydroxylase-related protein Related to phenylalanine hydroxylase and tryptophan monooxygenase, not usually found in angiosperms g666.t1,Cre01.g029250.t1.1,AAH1 PF00351 PTHR11473 - 1.14.16.1 K00500 GO:0016714,GO:0055114,GO:0004497,GO:0005506,GO:0009072 - - - Cre12.g525100 SMC6B - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 O n - 16 Structural Maintenance of Chromosomes protein Structural maintenance of chromosomes-like protein similar to Rad18. g12925.t1,Cre12.g525100.t1.1 - PTHR19306,PTHR19306:SF2 KOG0250 - - - AT5G15920.1 SMC5 structural maintenance of chromosomes 5 Cre14.g625350 MAE17 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 M n - 4 - - g15064.t1,MAE17 PF01554 PTHR11206:SF40,PTHR11206 KOG1347 - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT1G66760.2 - MATE efflux family protein Cre12.g510500 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 SP n upregulated 2 - - g12339.t1 - - - - - - - - - Cre07.g325720 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 C n - - - - g7534.t1,Cre26.g772350.t1.1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre17.g702850 CAV5 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 M n - 16 Voltage-gated Ca2+ channel, alpha subunit Voltage-dependent 4-domain calcium channel, alpha subunit; may exhibit altered ion selectivity as conserved P-loop loci differ from mammalian Ca2+ channels (PMID: 8968582) g17038.t1,CAV5 PF00520 PTHR10037:SF138,PTHR10037 KOG2301 - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G03560.1 ATCCH1,ATTPC1,FOU2,TPC1 two-pore channel 1 Cre02.g145850 FAP112 - 0 9 1.0 1.0 1 8 0.241581756498 1.0 O n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g2545.t1,Cre02.g145850.t1.1 - - - - - - - - - Cre04.g215700 - 0 9 1.0 1.0 1 8 0.241581756498 1.0 O n - - - - g4657.t1,Cre04.g215700.t1.1 PF07699 PTHR22727 - - - - - - - Cre10.g464800 - 0 9 1.0 1.0 1 8 0.241581756498 1.0 SP n - 15 - - g11389.t1,Cre10.g464800.t1.1 - PTHR11017 - - - - - - - Cre03.g185250 SSS2 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 C n - 18 Soluble starch synthase II ADP-glucose alpha-1,3-glucan synthase. Catalyses the transfer of the glucosyl moiety of the ADP-glc to the non-reducing end of a pre-existing alpha-1,3-linked chain g3839.t1,Cre03.g185250.t1.1 PF00534,PF08323 PTHR12526,PTHR12526:SF17 - 2.4.1.21 K00703 GO:0009058 AT3G01180.1 AtSS2,SS2 starch synthase 2 Cre12.g537250 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 SP n - 7 - - g13211.t1,Cre12.g537250.t1.1 - - - - - - - - - Cre01.g010250 PPP2 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 C n - 10 - - g257.t1,PPP2 PF07228 PTHR12320 KOG1379 - - GO:0003824 AT2G30170.1 - Protein phosphatase 2C family protein Cre01.g046324 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 O n - - - - g1035.t1 - - - - - - - - - Cre03.g204100 ELG5 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 SP n - 8 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g4234.t1,ELG5 PF03016 PTHR11062,PTHR11062:SF14 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre04.g219000 - 0 9 1.0 1.0 1 8 0.241581756498 1.0 SP n - 7 - - g4773.t1,Cre04.g219000.t1.1 PF00004 PTHR10887:SF165,PTHR10887 - - - GO:0005524 AT5G47010.1 ATUPF1,LBA1,UPF1 RNA helicase, putative Cre04.g217950 - 0 9 1.0 1.0 1 8 0.241581756498 1.0 O n downregulated 15 - - g4751.t1,Cre04.g217950.t1.1 PF00069 PTHR24347 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT4G04720.1 CPK21 calcium-dependent protein kinase 21 Cre01.g024050 - 0 9 1.0 1.0 1 8 0.241581756498 1.0 C n - 15 - - g556.t1,Cre01.g024050.t1.1 - PTHR23083,PTHR23083:SF208 - - - - - - - Cre07.g355900 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 M n upregulated 2 - - g8275.t1 - - - - - - - - - Cre03.g199050 - 0 9 1.0 1.0 1 8 0.241581756498 1.0 O n - - - - g4348.t1,Cre03.g199050.t1.1 PF00069,PF00027 PTHR24353 KOG0614 - - GO:0004672,GO:0005524,GO:0006468 AT1G30640.1 - Protein kinase family protein Cre06.g266300 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 C n - 17 - - g5978.t1,Cre06.g266300.t1.1 - PTHR12291,PTHR12291:SF16 - - - - - - - Cre06.g295050 - 0 9 1.0 1.0 1 8 0.241581756498 1.0 SP n - 13 - - g6830.t1 - - - - - - - - - Cre10.g447700 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 M n - 17 - - g11010.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre12.g505100 - 0 9 1.0 1.0 1 8 0.241581756498 1.0 M n upregulated 2 - - g12466.t1 PF03851 - - 3.-.-.- K13281 GO:0004519,GO:0006289,GO:0009411 - - - Cre12.g498800 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 O n - - - - g12609.t1 - - - - - - - - - Cre03.g210065 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 M n - 17 - - g4458.t1,Cre19.g755900.t1.1 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT5G49760.1 - Leucine-rich repeat protein kinase family protein Cre03.g207750 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 SP n - 17 - - g4154.t1 PF00211 PTHR11017 - 4.6.1.1 K01768 GO:0009190,GO:0016849,GO:0035556 AT5G49770.1 - Leucine-rich repeat protein kinase family protein Cre16.g692500 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 SP n - 17 - - g15628.t1 PF03110 - - - - GO:0003677,GO:0005634 AT1G27370.1 SPL10 squamosa promoter binding protein-like 10 Cre10.g449200 ANK5 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 O n upregulated 17 Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g11045.t1,ANK5 PF00023,PF04564 PTHR24198:SF302,PTHR24198 KOG4177 - - GO:0005515,GO:0000151,GO:0004842,GO:0016567 AT3G04710.3 - ankyrin repeat family protein Cre03.g186450 LNM1 - 1 8 0.257036815542 1.0 1 8 0.241581756498 1.0 M n - - Lysine N-methylase Putative SET domain lysine N-methylase, possibly involved in histone modification. ChromoDB SDG3414 g3863.t1,LNM1 PF09273,PF00856 PTHR13271 - - - GO:0005515 AT1G24610.1 - Rubisco methyltransferase family protein Cre02.g107050 DHC5 - 2 30 0.278873441036 1.0 2 30 0.252381471941 1.0 C n - 13 Dynein heavy chain 5, inner arm dynein b (monomeric) Flagellar inner arm dynein heavy chain, dynein b (monomeric). Identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714] g2194.t1 PF08393,PF07728,PF03028 PTHR10676,PTHR10676:SF138 KOG3595 - K10408 GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 - - - Cre12.g520150 SPLH3,SPL23 - 1 8 0.257036815542 1.0 0 9 1.0 1.0 O n - 16 DEAD/DEAH box helicase, possible nuclear pre-mRNA splicing factor DEAD/DEAH box helicase, possible nuclear pre-mRNA splicing factor. Homologue of S. cerevisiae mRNA splicing helicases Prp2, Prp16, Prp22 and Prp43 which are required at different steps of the spliceosome cycle. Previously annotated as SPLH3 g12817.t1,SPL23,SPLH3 PF00271,PF07717,PF00270,PF04408 PTHR18934 KOG0922 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G27900.1 - RNA helicase family protein Cre16.g676850 - 1 8 0.257036815542 1.0 0 9 1.0 1.0 C n - 18 - - g16578.t1,Cre16.g676850.t1.1 PF00004 PTHR20953 - - - GO:0005524 AT1G73170.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre12.g487950 - 1 8 0.257036815542 1.0 0 9 1.0 1.0 SP n downregulated 16 - - g12228.t1 - - KOG4462 - K06252 - AT5G42620.2 - metalloendopeptidases;zinc ion binding Cre16.g686400 FAO13 - 1 8 0.257036815542 1.0 0 9 1.0 1.0 C n upregulated 4 - - g16366.t1,Cre16.g686400.t1.1,FAO13 - PTHR11938:SF68,PTHR11938 - - - - - - - Cre06.g281200 - 1 8 0.257036815542 1.0 0 9 1.0 1.0 O n - 11 - - g6540.t1 PF00612,PF11971 PTHR13140,PTHR13140:SF200 - - - GO:0005515 AT4G21820.1 - binding;calmodulin binding Cre11.g467597 - 1 8 0.257036815542 1.0 0 9 1.0 1.0 O n - 10 - - g11527.t1 PF01061,PF08370,PF00005 PTHR19241,PTHR19241:SF90 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT3G30842.1 ATPDR10,PDR10 pleiotropic drug resistance 10 Cre01.g008850 HLM2 - 1 8 0.257036815542 1.0 0 9 1.0 1.0 O n - 7 - - g222.t1,HLM2 - - - - - - AT5G47490.1 - RGPR-related Cre09.g410050 - 1 8 0.257036815542 1.0 0 9 1.0 1.0 O n downregulated 17 - - g10159.t1,Cre09.g410050.t1.1 PF00689,PF00702,PF00690,PF00122 PTHR24093,PTHR24093:SF176 KOG0202 3.6.3.8 K01537 GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT1G07810.1 ACA3,ATECA1,ECA1 ER-type Ca2+-ATPase 1 Cre12.g547651 - 1 8 0.257036815542 1.0 0 9 1.0 1.0 M n - 9 - - g13601.t2,Cre12.g547550.t1.3, g13601.t3,Cre12.g547550.t2.1, g13601.t4,Cre12.g547550.t3.1, g13601.t1,Cre12.g547550.t4.1 - - KOG1003 - - - AT1G05320.1 - - Cre06.g278183 - 1 8 0.257036815542 1.0 0 9 1.0 1.0 O n - 13 - - g6326.t1,Cre13.g597450.t1.1,Cre13.g597450.t1.2 PF04784,PF00462 PTHR23054 KOG1752 - - GO:0009055,GO:0015035,GO:0045454 AT4G08550.1 - electron carriers;protein disulfide oxidoreductases Cre04.g215150 SSS1 - 1 8 0.257036815542 1.0 0 9 1.0 1.0 C n - 7 Soluble starch synthase I Putative soluble starch synthase I; catalyses the transfer of a glucosyl moiety of the ADP-glucose to the non-reducing end of a pre-existing alpha 1-4 linked chain. g4668.t2,Cre04.g215150.t1.1, g4668.t1 PF00534,PF08323 PTHR12526,PTHR12526:SF17 - - - GO:0009058 AT5G24300.1 ATSS1,SSI,SSI1 Glycogen/starch synthases, ADP-glucose type Cre10.g459450 SUB10 - 1 8 0.257036815542 1.0 0 9 1.0 1.0 SP n - - - - g11268.t1,Cre10.g459450.t1.1,SUB10 PF00082 PTHR10795,PTHR10795:SF32 - - - GO:0004252,GO:0006508 AT2G19170.1 SLP3 subtilisin-like serine protease 3 Cre17.g717850 PHC8 - 1 8 0.257036815542 1.0 0 9 1.0 1.0 SP n - 17 Cell wall protein pherophorin-C8 Pherophorin-C8 (PHC8) [PMID: 16367971]; very similar to extracellular matrix protein (cell wall protein) pherophorin-C6 [Genbank entry DQ196112], which belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich ( g17373.t1,PHC8 PF12499 - - - - - - - - Cre10.g433800 - 2 31 0.290997380889 1.0 2 31 0.263681140893 1.0 O n - 12 - - g10700.t1,Cre10.g433800.t1.1 - - - - - - - - - Cre13.g572850 FBB17 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 O n - 13 Flagellar/basal body protein Conserved protein found in ciliated organisms, unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation g14087.t1,FBB17 PF00246 PTHR12756 - - - GO:0004181,GO:0006508,GO:0008270 - - - Cre10.g456600 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 O n downregulated 16 - - g11205.t1 - - - - - - - - - Cre03.g197050 HTV2 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 C n - 12 Histone H3 variant - g4081.t1,Cre03.g197050.t1.1,HTV2 PF00125 PTHR11426 KOG1745 - - GO:0003677,GO:0000786,GO:0006334 AT5G65360.1 - Histone superfamily protein Cre05.g240100 EXN9 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 C n - 10 - - g5537.t1,EXN9 - - - - - - - - - Cre17.g734805 - 0 10 1.0 1.0 1 9 0.264527176185 1.0 O n - - - - g17781.t2, g17781.t1 - - - - - - - - - Cre01.g007700 - 0 10 1.0 1.0 1 9 0.264527176185 1.0 C n - 5 - - g198.t1 PF02789,PF00883 PTHR11963:SF3,PTHR11963 KOG2597 3.4.11.1 K01255 GO:0004177,GO:0005737,GO:0008235,GO:0019538,GO:0030145,GO:0005622,GO:0006508 AT2G24200.1 - Cytosol aminopeptidase family protein Cre10.g441850 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 O n - 11 - - g10872.t2, g10872.t1 - - - - - - - - - Cre06.g303650 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 O n - 5 - - g7032.t1 PF01253 PTHR12217,PTHR12217:SF4 KOG2522 - - GO:0003743,GO:0006413 AT1G71350.1 - eukaryotic translation initiation factor SUI1 family protein Cre07.g344100 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 O n - 17 - - g8005.t1, g8005.t2, g8005.t3 - PTHR11006,PTHR11006:SF4 - - - - AT4G16570.1 ATPRMT7,PRMT7 protein arginine methyltransferase 7 Cre03.g144607 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 C n - 13 - - g2894.t1,Cre60.g792100.t1.1,Cre60.g792100.t1.2 - - - - - - - - - Cre03.g144887 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 C n - 15 - - g2908.t1,Cre01.g058000.t1.1 PF00612 PTHR23125 - - - GO:0005515 AT1G10510.1 emb2004 RNI-like superfamily protein Cre14.g613550 FAP203 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g14785.t1,Cre14.g613550.t1.1 - - - - - - - - - Cre05.g245700 ANK25 - 0 10 1.0 1.0 1 9 0.264527176185 1.0 M n - 13 Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g5220.t1,ANK25 PF00023,PF06985 PTHR24123,PTHR24123:SF297 KOG4412 - K10380 GO:0005515 AT5G14230.1 - - Cre17.g706600 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 O n - 11 - - g17123.t1,Cre17.g706600.t1.1 - - - - - - - - - Cre12.g526701 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 SP n - 14 - - g12978.t1,Cre12.g526701.t1.1 PF00999 PTHR10110:SF20,PTHR10110 KOG1965 - - GO:0006812,GO:0015299,GO:0016021,GO:0055085 AT3G06370.1 ATNHX4,NHX4 sodium hydrogen exchanger 4 Cre11.g479450 - 0 10 1.0 1.0 1 9 0.264527176185 1.0 SP n - 16 - - g11903.t1 - - - - - - - - - Cre01.g017600 PQQ2 - 0 10 1.0 1.0 1 9 0.264527176185 1.0 O n - 9 Putative quinoprotein Presents motifs found on quinoproteins whose redox cofactor is a pyrrolo-quinoline quinone (PQQ); closely related to linked PPQ1 gene; most similar to bacterial quinoproteins; no orthologue found in Volvox g416.t1,PQQ2, g416.t2,PQQ2 PF01011 - - - - - - - - Cre17.g746047 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 SP n - 9 - - g18037.t1 - - - - - - - - - Cre03.g202150 DMC2 - 0 10 1.0 1.0 1 9 0.264527176185 1.0 O n - 9 - - g4279.t1,DMC2 PF00145 PTHR10629 - - - GO:0003677,GO:0006306 AT4G19020.1 CMT2 chromomethylase 2 Cre06.g278156 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 SP n - 11 - - g6299.t1,Cre13.g596150.t1.1 - - - - - - - - - Cre02.g088750 ATR2 - 0 10 1.0 1.0 1 9 0.264527176185 1.0 O n - 9 - - g1654.t1,Cre02.g088750.t1.1,ATR2 PF02260,PF02259,PF00454 PTHR11139,PTHR11139:SF1 KOG0889 - K08874 GO:0005515,GO:0016773 AT4G36080.2 - phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases Cre08.g358569 - 0 10 1.0 1.0 1 9 0.264527176185 1.0 SP n - 7 - - g8384.t1,Cre28.g776650.t1.1,Cre28.g776650.t1.2 - - - - - - - - - Cre11.g467692 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 C n upregulated 2 - - g11622.t1,Cre18.g744300.t1.1 PF07466 - - - - - AT1G54520.1 - - Cre03.g156000 - 0 10 1.0 1.0 1 9 0.264527176185 1.0 O n - 17 - - g3184.t1 - - - - - - - - - Cre16.g650650 AGT3 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 O n - 18 Alanine-glyoxylate aminotransferase Probable alanine-glyoxylate aminotransferase, most similar to the Mammalian AGT2-like enzyme; plant and mammalian homologues are usually located in the peroxisome, but the Chlamydomonas AGT3 protein misses a C-terminal PTS1 peroxisomal targeting sequence; g15742.t1,AGT3 PF00202 PTHR11986,PTHR11986:SF23 KOG1403 - - GO:0008483,GO:0030170 AT4G39660.1 AGT2 alanine:glyoxylate aminotransferase 2 Cre12.g518050 FAP261 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 M n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g12776.t1,Cre12.g518050.t1.1 PF10211 - - - - - - - - Cre05.g240225 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 O n - 4 - - g5540.t1, g5540.t2 PF05572 - - - - - - - - Cre09.g393321 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 M n - 7 - - g9751.t1 PF00685 - - - - GO:0008146 - - - Cre02.g083065 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 M n - 4 - - g1527.t1,Cre02.g083065.t1.1 PF00557,PF05195 PTHR10804,PTHR10804:SF17 KOG2737 - - GO:0009987,GO:0004177,GO:0030145 AT4G29490.1 - Metallopeptidase M24 family protein Cre13.g579500 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 M n - - - - g14236.t1,Cre13.g579500.t1.1 PF12146 PTHR11614 KOG1455 - - - AT2G39420.1 - alpha/beta-Hydrolases superfamily protein Cre11.g467500 - 0 10 1.0 1.0 1 9 0.264527176185 1.0 O n - 10 - - g11729.t1,Cre11.g467500.t1.1 PF05664 - - - - - AT4G11670.1 - Protein of unknown function (DUF810) Cre01.g032850 PTK23 - 0 10 1.0 1.0 1 9 0.264527176185 1.0 O n - 18 Protein tyrosine kinase, serine/threonine protein kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g742.t1,PTK23 PF00069 PTHR23257,PTHR23257:SF335 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre09.g413400 - 0 10 1.0 1.0 1 9 0.264527176185 1.0 M n downregulated 18 - - g10239.t1 PF00069,PF07714 PTHR26392:SF152,PTHR26392 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G79570.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre03.g185650 FAP251 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation g3847.t1,Cre03.g185650.t1.1 PF00400 PTHR13720 KOG2106 - - - - - - Cre02.g099100 - 1 9 0.281160794158 1.0 1 9 0.264527176185 1.0 C n - 13 - - g2016.t1 PF00632,PF00415,PF00627 PTHR11254,PTHR11254:SF123 KOG0941 - - GO:0005622,GO:0006464,GO:0016881,GO:0005515 AT1G55860.1 UPL1 ubiquitin-protein ligase 1 Cre06.g275950 - 1 60 0.724659100219 1.0 0 61 0.266365656906 1.0 O n - 13 - - g6186.t1 - - KOG1003 - - - - - - Cre01.g044850 - 0 62 0.271006420965 1.0 0 62 0.266769721094 1.0 O n - 8 - - g1002.t1,Cre01.g044850.t1.1 - PTHR15600:SF1,PTHR15600 KOG4172 - - - AT5G23110.1 - Zinc finger, C3HC4 type (RING finger) family protein Cre12.g549550 RSP19,TUB2 - 1 70 0.731124068447 1.0 0 71 0.280281576717 1.0 O n - 11 Beta tubulin 2 Beta-tubulin 2, GI:167458; major constituent of microtubules [PMID: 3460413]; it binds one mole of GTP that is hydrolyzed and alters dynamic instability of the microtubule cytoskeleton. The TUB1 and TUB2 genes encode identical proteins [PMID: 6098820]. T g13557.t1,Cre12.g549550.t1.1,RSP19 PF03953,PF00091 PTHR11588 KOG1375 - K07375 GO:0003924,GO:0005525,GO:0006184,GO:0043234,GO:0051258,GO:0005874,GO:0007017 AT5G62690.1 TUB2 tubulin beta chain 2 Cre01.g014450 - 1 9 0.281160794158 1.0 0 10 1.0 1.0 O n downregulated 17 - - g351.t1 - - - - - - - - - Cre11.g475950 HLM16 - 1 9 0.281160794158 1.0 0 10 1.0 1.0 O n - - - - g11822.t1,HLM16, g11822.t2,HLM16 PF00856 PTHR22884,PTHR22884:SF73 KOG2985 2.1.1.43 K11422 GO:0005515 AT5G42400.1 ATXR7,SDG25 SET domain protein 25 Cre02.g110050 - 1 9 0.281160794158 1.0 0 10 1.0 1.0 O n - 13 - - g2258.t2, g2258.t1 PF00400 PTHR18937,PTHR18937:SF117 KOG0963, KOG0978 - - - AT1G24530.1 - Transducin/WD40 repeat-like superfamily protein Cre07.g322350 - 1 9 0.281160794158 1.0 0 10 1.0 1.0 M n - 18 - - g7447.t1 PF00069,PF07714 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre13.g579582 - 1 9 0.281160794158 1.0 0 10 1.0 1.0 O n - 17 - - g14239.t1 PF03423 - - - - - AT1G11720.2 ATSS3,SS3 starch synthase 3 Cre16.g651150 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 O n - 17 - - g15752.t1, g15752.t2, g15752.t3 - - - - - - - - - Cre06.g297850 DHC12 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 M n - 16 - - g6889.t1 PF08393,PF07728,PF03028 PTHR10676,PTHR10676:SF137 KOG3595 - - GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 - - - Cre05.g234500 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 C n - - - - g5351.t1 PF00400 PTHR19847 KOG0265 - K11801 - AT4G03020.1 - transducin family protein / WD-40 repeat family protein Cre08.g364550 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 O n - 2 - - g8535.t1 PF00632,PF00415 PTHR11254,PTHR11254:SF121 KOG0941 6.3.2.19 K10587 GO:0005622,GO:0006464,GO:0016881 AT1G55860.1 UPL1 ubiquitin-protein ligase 1 Cre13.g588271 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 O n - 10 - - g14430.t1,Cre13.g588271.t1.1 PF07556 - - - - - - - - Cre07.g334300 TRP6 - 0 11 1.0 1.0 1 10 0.286777961798 1.0 O n - 16 Transient receptor potential ion channel protein C-terminal domain similar to transient receptor potential Ca2+ channel, involved in Ca2+ homeostasis; N-terminal region has G-protein beta WD-40 repeats; member of a family of at least 8 TRP proteins g7785.t1,TRP6 PF00400,PF00520 PTHR22847,PTHR22847:SF134 KOG0271 - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre06.g270400 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 O n - 16 - - g6067.t1,Cre06.g270400.t1.1 PF05686 PTHR12203 - - - - AT3G61270.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre13.g604050 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 SP n - 18 - - g14575.t1,Cre13.g604050.t1.1 - PTHR23244,PTHR23244:SF105 - - - - AT1G03445.1 BSU1 Serine/threonine protein phosphatase family protein Cre02.g103200 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 SP n - 16 - - g2108.t1 PF00211 PTHR11017,PTHR11017:SF7 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre16.g648750 - 0 11 1.0 1.0 1 10 0.286777961798 1.0 M n - - - - g15700.t1 PF10374 PTHR15696 - - K14409 - AT5G19400.1 SMG7 Telomerase activating protein Est1 Cre03.g174950 TGL7 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 SP n - 16 - - g3613.t1,TGL7 PF01764 PTHR21493:SF7,PTHR21493 - - - GO:0004806,GO:0006629 AT3G14075.1 - Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 Cre07.g340400 RSP17 - 0 11 1.0 1.0 1 10 0.286777961798 1.0 O n downregulated 13 Radial spoke protein 17 A subunit in the radial spoke stalk; containing a coiled coil typical of filamentous polypeptides [PMID: 16507594; GI:83284727 g7918.t1,Cre07.g340400.t1.1 - - - - - - - - - Cre03.g175926 - 0 11 1.0 1.0 1 10 0.286777961798 1.0 SP n - 16 - - g3634.t1 - - KOG3815 - - - AT2G10940.1 - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Cre03.g190900 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 O n - 9 - - g3951.t1 - PTHR10351:SF26,PTHR10351 - - - - - - - Cre09.g402330 - 0 11 1.0 1.0 1 10 0.286777961798 1.0 O n - 18 - - g10015.t1,Cre02.g140050.t1.1 PF00069 PTHR11795:SF315,PTHR11795 - - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre16.g650500 - 0 11 1.0 1.0 1 10 0.286777961798 1.0 C n - 12 - - g15738.t1,Cre16.g650500.t1.1 PF04379 PTHR14289:SF12,PTHR14289 - - K10290 - AT1G06110.1 SKIP16 SKP1/ASK-interacting protein 16 Cre10.g445000 SLT2 - 0 11 1.0 1.0 1 10 0.286777961798 1.0 SP n upregulated 7 Sodium/sulfate co-transporter SAC1-like transporter 2, putative sodium/sulfate co-transporter, transcript is up-regulated during sulfur-deprivation; related to the SAC1 protein which regulates sulfur-deficiency responses [PMID: 16307308] g10940.t2, g10940.t1,Cre10.g445000.t1.1 PF03600,PF02080 PTHR10283:SF52,PTHR10283 - - - GO:0015137,GO:0015746,GO:0016021,GO:0055085,GO:0006813,GO:0008324 AT5G47560.1 ATSDAT,ATTDT,TDT tonoplast dicarboxylate transporter Cre11.g478184 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 SP n - 13 - - g11872.t1 - PTHR10066,PTHR10066:SF12 - 3.2.1.25 K01192 - AT1G09010.1 - glycoside hydrolase family 2 protein Cre11.g467757 - 0 11 1.0 1.0 1 10 0.286777961798 1.0 O n - 2 - - g11686.t1,Cre22.g763900.t1.1, g11686.t2,Cre22.g763900.t2.1 - - KOG2992 - - - - - - Cre09.g388726 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 O n - 11 - - g9621.t4, g9621.t1, g9621.t3, g9621.t2 PF08645 PTHR12083 - 2.7.1.78,3.1.3.32 K08073 - AT3G14890.1, AT3G14890.2 - phosphoesterase Cre04.g218450 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 O n - 8 - - g4761.t1,Cre04.g218450.t1.1 - - - - - - AT3G08550.1 ABI8,ELD1,KOB1 elongation defective 1 protein / ELD1 protein Cre04.g217850 - 0 11 1.0 1.0 1 10 0.286777961798 1.0 O n - 17 - - g4749.t1 PF01061,PF00005 PTHR19241 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT2G37280.1 ATPDR5,PDR5 pleiotropic drug resistance 5 Cre12.g528300 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 M n - - - - g13010.t1 - - - - - - - - - Cre03.g197750 GPX3 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 C n upregulated 6 Glutathione peroxidase Homologous to glutathione peroxidase from other organisms. Possibly mitochondrial (prediction programs) g4096.t1,Cre03.g197750.t1.1 PF00255 PTHR11592 KOG1651 - - GO:0004602,GO:0006979,GO:0055114 AT2G25080.1 ATGPX1,GPX1 glutathione peroxidase 1 Cre12.g501150 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 O n - 15 - - g12553.t1,Cre12.g501150.t1.1 - - KOG4308 - - - - - - Cre13.g603100 - 0 11 1.0 1.0 1 10 0.286777961798 1.0 SP n downregulated 9 - - g14544.t1, g14544.t2 PF05686 PTHR12203 - - - - AT1G63420.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre09.g396750 - 0 11 1.0 1.0 1 10 0.286777961798 1.0 SP n - 8 - - g9351.t1, g9351.t3, g9351.t2 - - KOG4571 - - - - - - Cre01.g024650 CTL1 - 0 11 1.0 1.0 1 10 0.286777961798 1.0 SP n - 15 C-type lectin C-type lectin, contains C-type lectin domain responsible for carbohydrate binding activity (PMID: 16336259) g568.t1,CTL1 PF07714,PF00024 PTHR11612,PTHR11612:SF57 KOG0192 - - GO:0004672,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre17.g740000 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 O n - - - - g17898.t1 PF01753 - - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre10.g457400 - 1 10 0.304501010709 1.0 1 10 0.286777961798 1.0 O n - 16 - - g11222.t1 - PTHR24761,PTHR24761:SF37 KOG3910 - - - - - - Cre14.g622000 - 0 11 1.0 1.0 1 10 0.286777961798 1.0 C n - - - - g14986.t1 - - - - - - - - - Cre09.g392000 - 2 31 0.290997380889 1.0 1 32 1.0 1.0 O n - 13 - - g9452.t1, g9452.t2 PF09763 PTHR16092:SF13,PTHR16092 KOG2148 - - - AT1G47550.2 SEC3A exocyst complex component sec3A Cre16.g665050 CAV2 - 1 10 0.304501010709 1.0 0 11 1.0 1.0 O n - 16 Voltage-gated Ca2+ channel, alpha subunit Voltage-dependent 4-domain calcium channel, alpha subunit g16053.t1,Cre16.g665050.t1.1,CAV2 PF00520 PTHR10037:SF138,PTHR10037 KOG2301 - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G03560.1 ATCCH1,ATTPC1,FOU2,TPC1 two-pore channel 1 Cre11.g479000 CYG7 - 1 10 0.304501010709 1.0 0 11 1.0 1.0 O n - 15 Adenylate/guanylate cyclase Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g11893.t1,CYG7 PF00211 PTHR11920 - 4.6.1.2 K12323 GO:0009190,GO:0016849,GO:0035556 - - - Cre07.g346000 - 1 10 0.304501010709 1.0 0 11 1.0 1.0 SP n - 17 - - g8050.t1,Cre07.g346000.t1.1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre04.g221550 FAO5 - 1 10 0.304501010709 1.0 0 11 1.0 1.0 C n upregulated 6 - - g4835.t1,Cre04.g221550.t1.1,FAO5 - PTHR13847:SF34,PTHR13847 - - - - AT2G32640.1 - Lycopene beta/epsilon cyclase protein Cre12.g534200 - 1 10 0.304501010709 1.0 0 11 1.0 1.0 C n - 13 - - g13138.t1 - PTHR10588 - - - - - - - Cre03.g175600 - 1 10 0.304501010709 1.0 0 11 1.0 1.0 M n - 17 - - g3626.t1 PF00069 PTHR23257:SF326,PTHR23257 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT4G24480.1 - Protein kinase superfamily protein Cre01.g049826 - 1 10 0.304501010709 1.0 0 11 1.0 1.0 C n - 17 - - g1103.t1 PF12499 - - - - - - - - Cre16.g661500 - 1 10 0.304501010709 1.0 0 11 1.0 1.0 SP n - 15 - - g15973.t1,Cre16.g661500.t1.1 PF00089 - - - - GO:0004252,GO:0006508 - - - Cre02.g109100 PDE23 - 1 11 0.327082943647 1.0 1 11 0.308355155377 1.0 SP n - 18 3\',5\'-cyclic-nucleotide phosphodiesterase Similar to calcium/calmodulin-dependent 3\',5\'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain g2236.t1,PDE23 PF00233,PF03924 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre03.g176150 - 0 12 1.0 1.0 1 11 0.308355155377 1.0 M n upregulated 12 - - g3638.t1,Cre03.g176150.t1.1 - - - - - - - - - Cre09.g393850 MAPKKK2,PTK28 - 1 11 0.327082943647 1.0 1 11 0.308355155377 1.0 O n upregulated 6 Mitogen-Activated Protein Kinase Kinase Kinase Putative mitogen-activated protein kinase kinase kinase homolog 2. MOT23; identified by comparative genomics as being present only in organisms having motile (MOT) cilia g9412.t1,MAPKKK2,PTK28 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G38210.1 - Protein kinase family protein Cre13.g574850 ERM6 - 1 11 0.327082943647 1.0 1 11 0.308355155377 1.0 O n - - ERD4-related membrane protein Transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration) g14129.t2,ERM6, g14129.t1,ERM6 PF02714 PTHR13018:SF18,PTHR13018, PTHR13018:SF5,PTHR13018 KOG1134 - - GO:0016020 AT4G22120.1 - ERD (early-responsive to dehydration stress) family protein Cre16.g677950 QOR1 - 0 12 1.0 1.0 1 11 0.308355155377 1.0 O n - 16 - - g16556.t1,QOR1 PF08240,PF00106,PF00107 PTHR11695,PTHR11695:SF236 KOG1197 - K07119 GO:0008270,GO:0016491,GO:0055114,GO:0008152 AT1G49670.1 NQR ARP protein (REF) Cre14.g617650 PDE1 - 0 12 1.0 1.0 1 11 0.308355155377 1.0 SP n downregulated 15 3\',5\'-cyclic-nucleotide phosphodiesterase Ca+-calmodulin dependent 3\',5\'-cyclic-nucleotide phosphodiesterase similar to that from Mus musculus: PDE1B_mouse. Adjacent to PDE2 and PDE3 g14881.t1,PDE1 PF00233 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre03.g183150 - 1 11 0.327082943647 1.0 1 11 0.308355155377 1.0 O n - 11 - - g3796.t1 PF01549 - - - - - AT3G28480.1 - Oxoglutarate/iron-dependent oxygenase Cre02.g076200 - 1 11 0.327082943647 1.0 1 11 0.308355155377 1.0 O n - 7 - - g1367.t1 PF01433 PTHR11533:SF96,PTHR11533 KOG1046 3.4.11.3 K01257 GO:0006508,GO:0008237,GO:0008270 AT4G33090.1 APM1,ATAPM1 aminopeptidase M1 Cre09.g390134 - 1 11 0.327082943647 1.0 1 11 0.308355155377 1.0 O n - 18 - - g9660.t1,Cre78.g795700.t1.1,Cre78.g795700.t1.2 PF00069,PF07714 PTHR23257:SF297,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT2G35050.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre07.g335050 - 0 12 1.0 1.0 1 11 0.308355155377 1.0 SP n - 17 - - g7801.t1 - - - - - - - - - Cre10.g430950 SRH18 - 1 11 0.327082943647 1.0 1 11 0.308355155377 1.0 O n - 11 - - g10641.t1,SRH18 PF00176,PF00271 PTHR10799,PTHR10799:SF208 KOG0390 3.6.4.- K10875 GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT3G19210.1 ATRAD54,CHR25,RAD54 homolog of RAD54 Cre19.g750197 - 0 12 1.0 1.0 1 11 0.308355155377 1.0 O n - 15 - - g18121.t1 PF00225 PTHR24115:SF360,PTHR24115 - - - GO:0003777,GO:0005524,GO:0007018 AT2G28620.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre10.g455190 - 1 11 0.327082943647 1.0 1 11 0.308355155377 1.0 C n - 8 - - g11171.t1 PF04989 - - - - GO:0008168,GO:0008610 - - - Cre09.g409300 - 0 12 1.0 1.0 1 11 0.308355155377 1.0 SP n - 7 - - g10143.t1,Cre09.g409300.t1.1 PF06742,PF06863 - - - - - - - - Cre12.g533700 CYA12 - 0 12 1.0 1.0 1 11 0.308355155377 1.0 O n - 16 - - g13128.t1,CYA12 - PTHR11017 - - - - - - - Cre14.g613050 - 0 12 1.0 1.0 1 11 0.308355155377 1.0 SP n - - - - g14772.t2, g14772.t1 - - KOG3544 - - - - - - Cre12.g547351 - 1 11 0.327082943647 1.0 1 11 0.308355155377 1.0 M n - 2 - - g13605.t1,Cre12.g547351.t1.1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre07.g326800 PPP29 - 0 12 1.0 1.0 1 11 0.308355155377 1.0 O n - 7 - - g7600.t1,PPP29 PF08321,PF00515,PF00149 PTHR11668,PTHR11668:SF12 KOG0376 3.1.3.16 K04460 GO:0004722,GO:0046872,GO:0005515,GO:0016787 AT2G42810.1 PAPP5,PP5,PP5.2 protein phosphatase 5.2 Cre12.g520100 CYG66 - 0 12 1.0 1.0 1 11 0.308355155377 1.0 O n - 17 - - g12816.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre03.g198050 - 0 12 1.0 1.0 1 11 0.308355155377 1.0 M n - 18 - - g4102.t1,Cre03.g198050.t1.1 - - KOG2761 - - - AT4G14500.1 - Polyketide cyclase/dehydrase and lipid transport superfamily protein Cre16.g683371 ODC2 - 1 11 0.327082943647 1.0 1 11 0.308355155377 1.0 O n - 9 Ornithine decarboxylase 2 Pyridoxal-dependent decarboxylase acting on ornithine to produce putrescine, first step in polyamine biosynthesis(PMID: 11950995); fully active, based on conservation of important residues (PMID: 16847581), in particular a conserved lysine residue which i g16803.t1,Cre01.g069400.t1.1,Cre01.g069400.t1.2,ODC2 PF02784,PF00278 PTHR11482,PTHR11482:SF28 KOG0622 4.1.1.17 K01581 GO:0003824 AT3G14390.1 - Pyridoxal-dependent decarboxylase family protein Cre09.g392867 FMG1-B - 1 36 1.0 1.0 2 35 0.308781999073 1.0 SP n - 11 Flagella membrane glycoprotein, major form Flagella membrane protein, major form. Only one expressed in Chlamydomonas during vegetative growth (and likely even in gametes). A gene model for this was present in v2, lost in v3, and and recovered with Augustus (first noticed in Au5 update). This g g9144.t1,Cre29.g778950.t1.1,Cre29.g778950.t1.2,FMG1-B - - KOG1218 - - - - - - Cre01.g009500 CDPK3 - 1 37 1.0 1.0 2 36 0.319985493808 1.0 O n - 6 - - g239.t1,Cre01.g009500.t1.1,CDPK3 PF00069,PF00036 PTHR24347,PTHR24347:SF13 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT3G10660.1 ATCPK2,CPK2 calmodulin-domain protein kinase cdpk isoform 2 Cre01.g006900 - 1 11 0.327082943647 1.0 0 12 1.0 1.0 O n - 15 - - g181.t2, g181.t1 PF05548,PF00415 PTHR22870,PTHR22870:SF58 - - - - AT3G55580.1 - Regulator of chromosome condensation (RCC1) family protein Cre10.g431950 - 1 11 0.327082943647 1.0 0 12 1.0 1.0 O n - 15 - - g10661.t1,Cre10.g431950.t1.1 PF00069 PTHR23257:SF374,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre03.g192450 CYA3 - 1 11 0.327082943647 1.0 0 12 1.0 1.0 SP n - 15 - - g3983.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre17.g718750 - 1 11 0.327082943647 1.0 0 12 1.0 1.0 O n downregulated 12 - - g17394.t1,Cre17.g718750.t1.1 - PTHR10891 KOG0027 - - - AT2G41100.3 ATCAL4,TCH3 Calcium-binding EF hand family protein Cre09.g393617 - 1 11 0.327082943647 1.0 0 12 1.0 1.0 SP n upregulated 13 - - g9759.t1,Cre02.g129622.t1.1 - - - - - - - - - Cre09.g394400 - 1 11 0.327082943647 1.0 0 12 1.0 1.0 M n - 17 - - g9401.t1 PF00069 PTHR23257,PTHR23257:SF349 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre15.g640000 - 1 11 0.327082943647 1.0 0 12 1.0 1.0 O n - 16 - - g15401.t1 - - - - - - - - - Cre16.g694201 - 1 11 0.327082943647 1.0 0 12 1.0 1.0 O n - 13 - - g15589.t1 - PTHR12461:SF2,PTHR12461 - - - - AT3G20810.3 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre14.g627576 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 C n - 13 - - g15117.t1 PF08393,PF03028 PTHR10676,PTHR10676:SF136 KOG3595 - - GO:0003777,GO:0007018,GO:0030286 - - - Cre07.g330200 RSP9 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 SP n - 12 Radial spoke protein 9 A subunit in the flagellar radial spoke head; gene originally termed PF17 [PMID: 7204490, PMID: 16507594; GI:83284713] g7684.t1,Cre07.g330200.t1.1 - PTHR22069 - - - - - - - Cre02.g105750 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 O n upregulated 17 - - g2168.t1 - - - - - - - - - Cre16.g655950 TRP2 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 O n - 15 Transient receptor potential ion channel protein TRP-like ion channel protein, homology to TRPL Channel. g15856.t1,TRP2, g15856.t3,TRP2, g15856.t2,TRP2, g15856.t4,TRP2 - PTHR10117,PTHR10117:SF26 - - - - - - - Cre10.g456950 CEP10 - 0 13 1.0 1.0 1 12 0.329279161263 1.0 O n - 7 - - g11212.t1,CEP10 PF00112,PF01476 PTHR12411:SF103,PTHR12411 - - - GO:0006508,GO:0008234,GO:0016998 AT3G43960.1 - Cysteine proteinases superfamily protein Cre01.g010750 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 O n - 16 - - g267.t1,Cre01.g010750.t1.1 PF01342 - - - - GO:0003677,GO:0005634 - - - Cre03.g182050 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 O n - 8 - - g3773.t1,Cre03.g182050.t1.1 PF00501 PTHR24096 KOG1256 - - GO:0003824,GO:0008152 AT4G23850.1 LACS4 AMP-dependent synthetase and ligase family protein Cre12.g519950 FAP42 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 O n downregulated 13 Flagellar Associated Protein, adenylate/guanylate kinase-like Flagellar Associated Protein similar to adenylate/guanylate kinases, found in the flagellar proteome [PMID: 15998802]. May exhibit calpain cysteine endopeptidase activity g12812.t1 PF00406,PF00648,PF00625 PTHR23359,PTHR23359:SF22 KOG3078 - - GO:0005524,GO:0006139,GO:0019205,GO:0004198,GO:0005622,GO:0006508,GO:0005515 AT5G35170.1 - adenylate kinase family protein Cre16.g676800 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 SP n - - - - g16579.t1,Cre16.g676800.t1.1 PF01547,PF00211 PTHR11017 - 4.6.1.1 K01768 GO:0005215,GO:0006810,GO:0009190,GO:0016849,GO:0035556 - - - Cre17.g741950 BBS1 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 O n - 12 Bardet-Biedl syndrome-1 associated protein Similar to Bardet-Biedl syndrome 1 g17944.t1,BBS1 - PTHR20870 - - - - - - - Cre02.g096000 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 O n - 11 - - g1949.t2, g1949.t1 PF01061,PF00005 PTHR19241,PTHR19241:SF20 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT1G17840.1 ABCG11,ATWBC11,COF1,DSO,WBC11 white-brown complex homolog protein 11 Cre03.g162400 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 M n - 10 - - g3329.t1 - PTHR16216,PTHR16216:SF2 - - - - - - - Cre10.g450850 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 O n upregulated 2 - - g11079.t1 PF00168 - - - - GO:0005515 - - - Cre03.g206257 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 O n - 13 - - g4423.t1,Cre19.g754450.t1.1 PF00069 PTHR23257 KOG1187 - - GO:0004672,GO:0005524,GO:0006468 AT2G48010.1 RKF3 receptor-like kinase in in flowers 3 Cre10.g426292 PYK6 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 O n - - - - g10533.t1,PYK6 PF00224,PF02887 PTHR11817 KOG2323 - - GO:0000287,GO:0004743,GO:0006096,GO:0030955 AT2G36580.1 - Pyruvate kinase family protein Cre06.g266350 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 SP n - 15 - - g5979.t1 PF00400,PF00646,PF01753 PTHR12291,PTHR12291:SF16 KOG0266 - - GO:0005515,GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre06.g264850 - 1 12 0.348931242748 1.0 1 12 0.329279161263 1.0 O n - 13 - - g5949.t1 - - - - - - - - - Cre16.g677050 - 0 13 1.0 1.0 1 12 0.329279161263 1.0 M n downregulated 18 - - g16574.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre01.g024750 - 0 13 1.0 1.0 1 12 0.329279161263 1.0 O n - 9 - - g569.t1 PF00069 PTHR11612,PTHR11612:SF57 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre02.g106450 LCA1 - 2 84 1.0 1.0 4 82 0.334195239381 1.0 SP n upregulated 2 - - g2182.t2,LCA1, g2182.t1,LCA1 PF00004 PTHR23070:SF3,PTHR23070 - - - GO:0005524 AT3G50940.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre10.g450000 - 2 38 0.374531398257 1.0 2 38 0.342248266967 1.0 O n upregulated 16 - - g11061.t1,Cre10.g450000.t1.1 - - - - - - - - - Cre17.g721750 ELG9 - 1 12 0.348931242748 1.0 0 13 1.0 1.0 SP n - 9 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g17462.t1,ELG9 PF03016 PTHR11062,PTHR11062:SF12 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre06.g304876 - 1 12 0.348931242748 1.0 0 13 1.0 1.0 C n - 10 - - g7057.t1 - PTHR18063,PTHR18063:SF6 - - - - - - - Cre12.g536600 FAP78 - 1 12 0.348931242748 1.0 0 13 1.0 1.0 O n - 15 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g13195.t1 - PTHR11584:SF273,PTHR11584 - - - - - - - Cre16.g674700 AGH1 - 1 12 0.348931242748 1.0 0 13 1.0 1.0 M n - 11 - - g16625.t1,Cre16.g674700.t1.1,AGH1 PF03747 PTHR16222,PTHR16222:SF10 - - - - - - - Cre07.g346317 - 1 12 0.348931242748 1.0 0 13 1.0 1.0 SP n - 11 - - g8057.t2, g8057.t1 - PTHR12203 - - - - - - - Cre06.g291850 - 1 12 0.348931242748 1.0 0 13 1.0 1.0 O n - - - - g6762.t1, g6762.t3,Cre06.g291850.t1.1, g6762.t2 - - - - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre17.g726950 - 1 13 0.370069755852 1.0 1 13 0.349569765191 1.0 O n - - - - g17576.t1 PF00069 PTHR11042:SF16,PTHR11042 - - - GO:0004674,GO:0005524,GO:0006468,GO:0006950,GO:0004672 AT3G59410.2 GCN2 protein kinase family protein Cre12.g513900 - 0 14 1.0 1.0 1 13 0.349569765191 1.0 SP n downregulated 16 - - g12686.t1 - - - - - - - - - Cre06.g306900 SRR9 - 1 13 0.370069755852 1.0 1 13 0.349569765191 1.0 SP n - 8 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g7109.t1,SRR9 PF00530 PTHR19331,PTHR19331:SF376 - - - GO:0005044,GO:0016020 - - - Cre03.g188500 VPS46 - 1 13 0.370069755852 1.0 1 13 0.349569765191 1.0 O n - 13 Subunit of the ESCRT-III complex Expressed Protein. Similar to yeast Did2p/Vps46p, SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes) g3904.t1,Cre03.g188500.t1.1,VPS46 PF03357 PTHR10476,PTHR10476:SF2 KOG3232 - K12197 GO:0015031 AT1G17730.1 CHMP1B,VPS46.1 vacuolar protein sorting 46.1 Cre06.g278164 - 1 13 0.370069755852 1.0 1 13 0.349569765191 1.0 M n - 17 - - g6307.t1,Cre13.g596550.t1.1 PF05548 - - - - - - - - Cre03.g210625 - 1 13 0.370069755852 1.0 1 13 0.349569765191 1.0 C n - 9 - - g4463.t1,Cre19.g756150.t1.1 PF00271,PF00097,PF00176 PTHR10799,PTHR10799:SF165 KOG1001 - - GO:0003676,GO:0004386,GO:0005524,GO:0003677 AT5G22750.1 RAD5 DNA/RNA helicase protein Cre13.g590850 - 1 13 0.370069755852 1.0 1 13 0.349569765191 1.0 O n - 16 - - g14489.t1,Cre13.g590850.t1.1 - - - - - - - - - Cre14.g621100 - 1 13 0.370069755852 1.0 1 13 0.349569765191 1.0 SP n - 9 - - g14967.t1 - - - - - - - - - Cre03.g164550 FRA2 - 0 14 1.0 1.0 1 13 0.349569765191 1.0 O n - 14 - - g3373.t1,Cre03.g164550.t1.1,FRA2 PF01722 PTHR12735 KOG3348 - - - AT5G09830.1 - BolA-like family protein Cre07.g328000 - 0 14 1.0 1.0 1 13 0.349569765191 1.0 SP n - 17 - - g7630.t1,Cre07.g328000.t1.1 - - - - - - - - - Cre10.g440550 - 1 13 0.370069755852 1.0 1 13 0.349569765191 1.0 O n - 16 - - g10843.t1 PF00415 PTHR22870 - - - - AT5G63860.1 UVR8 Regulator of chromosome condensation (RCC1) family protein Cre16.g654600 - 1 13 0.370069755852 1.0 1 13 0.349569765191 1.0 SP n - 17 - - g15825.t1 PF12499 - - - - - - - - Cre17.g700700 - 1 13 0.370069755852 1.0 1 13 0.349569765191 1.0 SP n - 15 - - g16991.t1 - - - - - - - - - Cre02.g104250 - 0 14 1.0 1.0 1 13 0.349569765191 1.0 M n - 17 - - g2133.t1 PF02932,PF02931 PTHR18945 KOG3645 - K05312 GO:0006811,GO:0016021,GO:0016020,GO:0005230,GO:0006810 - - - Cre09.g396950 CGL15,MFT25 - 1 13 0.370069755852 1.0 1 13 0.349569765191 1.0 C Y - 17 Sodium-dependent phosphate transporter, major facilitator superfamily Sodium-dependent phosphate transporter, major facilitator superfamily. Green-lineage conserved expressed protein. Previously annotated as CGL15 g9347.t1,CGL15,MFT25 PF07690 PTHR11662:SF23,PTHR11662 KOG2532 - - GO:0016021,GO:0055085 AT5G20380.1 PHT4;5 phosphate transporter 4;5 Cre16.g654950 SRR3 - 1 13 0.370069755852 1.0 1 13 0.349569765191 1.0 SP n - 16 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g15832.t1,SRR3 PF00530 PTHR19331 - - - GO:0005044,GO:0016020 - - - Cre03.g201300 - 1 13 0.370069755852 1.0 1 13 0.349569765191 1.0 SP n - 17 - - g4299.t1 PF01082,PF03712,PF03351 PTHR10157:SF15,PTHR10157 KOG3568 1.14.17.1 K00503 GO:0004497,GO:0005507,GO:0004500,GO:0006584,GO:0055114 - - - Cre12.g500550 - 7 256 0.727689355471 1.0 5 258 0.366439986225 1.0 M n upregulated 11 - - g12565.t1,Cre12.g500550.t1.1 PF00092 PTHR13789,PTHR13789:SF63 - - - GO:0005515 AT3G54780.1 - Zinc finger (C3HC4-type RING finger) family protein Cre13.g603550 - 0 15 1.0 1.0 1 14 0.36924615329 1.0 C n downregulated 17 - - g14552.t1,Cre13.g603550.t1.1 - - - - - - - - - Cre13.g585700 - 1 14 0.390521555299 1.0 1 14 0.36924615329 1.0 O n - 11 - - g14375.t1 - - - - - - AT1G05500.1 ATSYTE,NTMC2T2.1,NTMC2TYPE2.1,SYT5,SYTE Calcium-dependent lipid-binding (CaLB domain) family protein Cre05.g240700 - 1 14 0.390521555299 1.0 1 14 0.36924615329 1.0 SP n - - - - g5551.t1 PF05572,PF00530 - - - - GO:0005044,GO:0016020 - - - Cre17.g717950 - 1 14 0.390521555299 1.0 1 14 0.36924615329 1.0 SP n - 14 - - g17376.t1,Cre17.g717950.t1.1, g17376.t2 PF12499 - - - - - - - - Cre01.g044350 - 1 14 0.390521555299 1.0 1 14 0.36924615329 1.0 SP n - 15 - - g992.t1 PF07699 - - - - - - - - Cre12.g531400 NPH4,NPHP4 - 1 14 0.390521555299 1.0 1 14 0.36924615329 1.0 M n - 11 Nephrocystin-4-like protein Found in basal body proteome as POC10 [PMID: 15964273]. Mammalian homolog is NPHP-4, also known as nephroretinin, gene mutated in Senior-Loken syndrome. g13078.t1,NPH4 PF00612 - - - - GO:0005515 - - - Cre10.g440350 - 1 14 0.390521555299 1.0 1 14 0.36924615329 1.0 O n - 17 - - g10839.t1 PF07887 - KOG0487 - - - - - - Cre04.g227500 SRR18 - 1 14 0.390521555299 1.0 1 14 0.36924615329 1.0 M n - 3 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g4977.t1,SRR18 PF00530 PTHR19331,PTHR19331:SF419 - - K06558 GO:0005044,GO:0016020 - - - Cre17.g728450 - 1 14 0.390521555299 1.0 1 14 0.36924615329 1.0 SP n - 1 - - g17607.t1,Cre17.g728450.t1.1 - - - - - - - - - Cre06.g303200 - 1 14 0.390521555299 1.0 1 14 0.36924615329 1.0 SP n downregulated 17 - - g7021.t1 PF07202 - KOG4361 - - - - - - Cre13.g572750 AMX3 - 1 14 0.390521555299 1.0 1 14 0.36924615329 1.0 M n - - Copper amine oxidase, amiloride-sensitive Amiloride-binding protein (ABP); (Histaminase); Diamine oxidase (DAO); could be involved in putrescine degradation; functions as a homodimer, each subunit containing a Cu ion and a 2,4,5-trihydroxyphenylalanine quinone (TPQ) cofactor g14085.t3,AMX3, g14085.t1,AMX3, g14085.t2,AMX3 PF01179,PF02727 PTHR10638,PTHR10638:SF12 KOG1186 1.4.3.22 K11182 GO:0005507,GO:0008131,GO:0009308,GO:0048038,GO:0055114 AT1G31690.1 - Copper amine oxidase family protein Cre02.g095125 - 1 14 0.390521555299 1.0 1 14 0.36924615329 1.0 SP n - 16 - - g1898.t1,Cre11.g473450.t1.1,Cre11.g473450.t1.2 - PTHR22870:SF117,PTHR22870 - - - - AT5G63860.1 UVR8 Regulator of chromosome condensation (RCC1) family protein Cre04.g217908 FAP79 - 1 13 0.370069755852 1.0 0 14 1.0 1.0 O n - 11 Flagellar Associated Protein Flagellar Associated Protein with ankyrin repeats. Found in the flagellar proteome [PMID: 15998802]. Possible phospholipase A2 or serine endopeptidase activity g4539.t1,Cre03.g211250.t1.1,FAP79 PF00023 PTHR24189:SF258,PTHR24189 KOG4412 - - GO:0005515 AT2G03430.1 - Ankyrin repeat family protein Cre11.g467675 - 1 13 0.370069755852 1.0 0 14 1.0 1.0 C n - - - - g11605.t1,Cre18.g745100.t1.1 - - KOG4412 - - - AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre10.g437300 - 1 13 0.370069755852 1.0 0 14 1.0 1.0 SP n - 10 - - g10776.t1 PF00053 - - - - - - - - Cre10.g424350 - 1 13 0.370069755852 1.0 0 14 1.0 1.0 C n upregulated - - - g10492.t1 PF12315,PF00412 PTHR24209,PTHR24209:SF104 KOG1701 - - GO:0008270 AT1G19270.1 DA1 DA1 Cre03.g176833 - 1 15 0.410308962986 1.0 1 15 0.388326930188 1.0 C n - 2 - - g3654.t1 PF00022 PTHR11937,PTHR11937:SF76 KOG0676 - - - AT3G18780.2 ACT2,DER1,ENL2,LSR2 actin 2 Cre13.g591100 MSC5,MSCL3 - 1 15 0.410308962986 1.0 1 15 0.388326930188 1.0 O n - 9 Predicted protein with mechanosensitive ion channel domain Protein of unknown function with mechanosensitive ion channel (MSC) like domain. Previously annotated as MSCL3 g14496.t1,MSC5,MSCL3 PF00924 - KOG4462 - - GO:0016020,GO:0055085 AT1G53470.1 MSL4 mechanosensitive channel of small conductance-like 4 Cre07.g331150 - 1 15 0.410308962986 1.0 1 15 0.388326930188 1.0 M n - 8 - - g7705.t1,Cre07.g331150.t1.1 PF00141,PF07731,PF07732 PTHR11709,PTHR11709:SF31 - - - GO:0004601,GO:0006979,GO:0020037,GO:0055114,GO:0005507,GO:0016491 AT1G23010.1 LPR1 Cupredoxin superfamily protein Cre06.g262400 - 1 15 0.410308962986 1.0 1 15 0.388326930188 1.0 O n downregulated 16 - - g5895.t1 PF00027 PTHR14226 - 3.1.1.5 K14676 - - - - Cre10.g424600 - 1 15 0.410308962986 1.0 1 15 0.388326930188 1.0 O n - 15 - - g10497.t1 - PTHR24114:SF43,PTHR24114 - - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre04.g229494 - 1 15 0.410308962986 1.0 1 15 0.388326930188 1.0 O n upregulated 1 - - g5026.t1 PF00481 PTHR13832 - - - GO:0003824 AT5G53140.1 - Protein phosphatase 2C family protein Cre03.g211073 - 1 15 0.410308962986 1.0 1 15 0.388326930188 1.0 O n - 16 Phosphoprotein phosphatase 2C Phosphoprotein phosphatase 2C. Previously annoated as PP2C3 g4468.t1,Cre19.g756350.t1.1,Cre19.g756350.t1.2 PF00481 PTHR13832,PTHR13832:SF118 KOG0698 3.1.3.16 K14497 GO:0003824 AT5G57050.1 ABI2,AtABI2 Protein phosphatase 2C family protein Cre12.g527100 - 1 15 0.410308962986 1.0 1 15 0.388326930188 1.0 SP n - 18 - - g12986.t1, g12986.t2 PF00005 PTHR19241:SF99,PTHR19241 KOG0061 - - GO:0005524,GO:0016887 AT5G60740.1 - ABC transporter family protein Cre03.g201450 - 1 15 0.410308962986 1.0 1 15 0.388326930188 1.0 SP n - 15 - - g4293.t1 - PTHR11017 - - - - - - - Cre02.g100950 - 0 16 1.0 1.0 1 15 0.388326930188 1.0 M n - 13 - - g2060.t1 PF00023 - - - - GO:0005515 - - - Cre17.g736750 - 0 16 1.0 1.0 1 15 0.388326930188 1.0 O n - 8 - - g17821.t1 - - - - - - - - - Cre08.g384150 - 1 14 0.390521555299 1.0 0 15 1.0 1.0 C n upregulated 17 - - g9041.t1 - - - - - - - - - Cre01.g004124 - 1 14 0.390521555299 1.0 0 15 1.0 1.0 M n downregulated 9 - - g102.t2, g102.t1 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre02.g075050 PTA1 - 1 14 0.390521555299 1.0 0 15 1.0 1.0 O n - - Proton/phosphate symporter Gi|21218039|gb|AB074874.1: Putative phosphate transporter homolog type A-1, similar to yeast Pho84 proton/phosphate symporter. g1342.t1,Cre02.g075050.t1.1,PTA1 PF00083 PTHR24064:SF16,PTHR24064 KOG0252 - K08176 GO:0016021,GO:0022857,GO:0055085 AT5G43340.1 PHT1;6,PHT6 phosphate transporter 1;6 Cre07.g343333 - 1 14 0.390521555299 1.0 0 15 1.0 1.0 M n - 11 - - g7986.t2,Cre07.g343350.t1.3, g7986.t1,Cre07.g343350.t2.1 PF00580 PTHR11070 - - - GO:0003677,GO:0004003,GO:0005524,GO:0006281 AT4G25120.1 ATSRS2,SRS2 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre04.g217935 - 0 43 0.404802430133 1.0 0 43 0.641747721549 1.0 O n - 8 - - g4566.t1 - PTHR23346,PTHR23346:SF1 - - K11886 - AT2G26780.1 - ARM repeat superfamily protein Cre13.g589426 - 1 46 1.0 1.0 0 47 0.40540053615 1.0 O n - 2 - - g14460.t1 - - - - - - - - - Cre03.g170200 - 1 16 0.429453574738 1.0 1 16 0.406830136425 1.0 O n - 13 - - g3504.t2, g3504.t1 PF00168,PF07002 PTHR10857 KOG1327 - - GO:0005515 AT1G08860.1 BON3 Calcium-dependent phospholipid-binding Copine family protein Cre06.g285900 - 1 16 0.429453574738 1.0 1 16 0.406830136425 1.0 C n - 15 - - g6644.t1 - PTHR24106 - - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre07.g321400 FAP113 - 1 16 0.429453574738 1.0 1 16 0.406830136425 1.0 SP n downregulated 15 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802], contains Myxococcus cysteine-rich repeat g7429.t1 - - KOG3544 - - - - - - Cre10.g434650 CTR3 - 1 16 0.429453574738 1.0 1 16 0.406830136425 1.0 SP n downregulated 6 Copper transport accessory protein Copper transport related; high similarity to CTR type copper ion transporter CTR2 (q.v.), of which it is a close neighbour in the genome (33.5 kb away); has the motif MxxxM-X13-GxxxG per Vinzenz Unger, but appears to lack TM2 and TM3; appears to have clea g10719.t1 - PTHR12483:SF9,PTHR12483 - - - GO:0005375,GO:0016021,GO:0035434 - - - Cre09.g406448 - 1 16 0.429453574738 1.0 1 16 0.406830136425 1.0 O n - 11 - - g10077.t1 - - - - - - - - - Cre13.g578501 - 1 16 0.429453574738 1.0 1 16 0.406830136425 1.0 O n - 10 - - g14212.t1 - PTHR12706 KOG1513 - - - AT1G79350.1 EMB1135 RING/FYVE/PHD zinc finger superfamily protein Cre10.g436800 - 1 16 0.429453574738 1.0 1 16 0.406830136425 1.0 SP n - - - - g10766.t2, g10766.t1 PF01833,PF10162,PF07691 PTHR25069:SF29,PTHR25069 KOG4462 - - GO:0005515 - - - Cre16.g670754 - 0 52 0.417636822197 1.0 0 52 0.410083573302 1.0 C n - 16 - - g16305.t1 PF07885,PF00027 PTHR10217:SF393,PTHR10217 - - - - AT3G02850.1 SKOR STELAR K+ outward rectifier Cre09.g387400 POLZ1 - 1 15 0.410308962986 1.0 0 16 1.0 1.0 O n - 13 DNA polymerase zeta Homologous to eukaryotic DNA polymerase zeta. Involved in bypass synthesis/translesion synthesis/mutagenic DNA replication; a class B polymerase. See Burgers et al. (2001) (PMID: 11579108). Previously annotated as POLZ1 g9557.t1,POLZ1 PF00136,PF03104 PTHR10322,PTHR10322:SF5 - 2.7.7.7 K02350 GO:0000166,GO:0003677,GO:0003887,GO:0006260 AT1G67500.2 ATREV3,REV3 recovery protein 3 Cre09.g390356 - 1 15 0.410308962986 1.0 0 16 1.0 1.0 SP n - 13 - - g9666.t1,Cre02.g125700.t1.1 PF04564 - - - - GO:0000151,GO:0004842,GO:0016567 AT4G25160.1 - U-box domain-containing protein kinase family protein Cre07.g337582 - 1 15 0.410308962986 1.0 0 16 1.0 1.0 O n - 15 - - g7853.t1 PF03448 - - - - - - - - Cre09.g397327 - 1 15 0.410308962986 1.0 0 16 1.0 1.0 O n - 9 ATM/ATR-related hosphatidylinositol 3-kinase ATM/ATR-related hosphatidylinositol 3-kinase. May be DNA-PKcs, catalytic subunit of a nuclear DNA-dependent serine/threonine protein kinase (DNA-PK). The second component is the autoimmune antigen Ku. On its own, the catalytic subunit of DNA-PK is inacti g9861.t1,Cre02.g134200.t1.1 PF02260,PF00454 PTHR11139:SF8,PTHR11139 - - - GO:0005515,GO:0016773 AT1G50030.1 TOR target of rapamycin Cre04.g219750 HEL22 - 1 15 0.410308962986 1.0 0 16 1.0 1.0 O n - 11 - - g4790.t1,HEL22 PF00271,PF00270,PF09382 PTHR13710 KOG0353 3.6.4.12 K10901 GO:0003676,GO:0004386,GO:0005524,GO:0006310,GO:0008026,GO:0006260,GO:0006281,GO:0043140 AT1G10930.1 ATRECQ4A,ATSGS1,RECQ4A DNA helicase (RECQl4A) Cre06.g305750 - 1 17 0.447976284129 1.0 1 17 0.424773266102 1.0 O n - 16 - - g7077.t1,Cre06.g305750.t1.1 PF00168 PTHR16122,PTHR16122:SF14 - - - GO:0005515 AT4G34150.1 - Calcium-dependent lipid-binding (CaLB domain) family protein Cre05.g244250 DHC6 - 1 17 0.447976284129 1.0 1 17 0.424773266102 1.0 C n - 13 Flagellar inner arm dynein heavy chain, dynein a (monomeric) Flagellar inner arm dynein heavy chain, dynein a (monomeric). Identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714] g5249.t1,Cre05.g244250.t1.1 PF08393,PF07728,PF03028 PTHR10676,PTHR10676:SF138 KOG3595 - - GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 - - - Cre07.g339104 - 1 17 0.447976284129 1.0 1 17 0.424773266102 1.0 M n - 16 - - g7888.t1,Cre07.g339104.t1.1, g7888.t2 PF00005 PTHR19241 KOG0061 - - GO:0005524,GO:0016887 AT1G53390.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre11.g467629 - 0 18 1.0 1.0 1 17 0.424773266102 1.0 M n - - - - g11559.t2,Cre18.g747200.t1.1, g11559.t1,Cre18.g747200.t2.1 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre16.g651450 - 1 16 0.429453574738 1.0 0 17 1.0 1.0 SP n - 11 - - g15758.t1 PF12359,PF12340 - - - - - - - - Cre04.g224800 VAMP74,VAM4 - 2 122 0.445253109655 1.0 5 119 0.429666633633 1.0 O n upregulated 16 Endosomal R-SNARE protein, Vamp7/Nyv1-family (R.III) Endosomal R-SNARE protein, Vamp7/Nyv1-family (R.III). Expressed Protein. Class R.III SNARE, involved in Golgi/PM and Golgi/endosomal trafficking (PMID: 17596510). Most similar to VAMP72-family of land plants, part of 4-member gene family in Chlamydomona g4906.t1,Cre04.g224800.t1.1,VAM4,VAMP74 PF00957 PTHR21136,PTHR21136:SF46 KOG0859 - - GO:0016021,GO:0016192 AT1G04760.1 ATVAMP726,VAMP726 vesicle-associated membrane protein 726 Cre04.g219150 - 0 19 1.0 1.0 1 18 0.442173282756 1.0 SP n - - - - g4776.t1 - - - - - - - - - Cre06.g271850 - 1 18 0.465897304943 1.0 1 18 0.442173282756 1.0 C n - 3 - - g6100.t1,Cre06.g271850.t1.1 PF00005 PTHR19211 KOG0062 - - GO:0005524,GO:0016887 AT5G60790.1 ATGCN1,GCN1 ABC transporter family protein Cre01.g009550 NAT6 - 1 18 0.465897304943 1.0 1 18 0.442173282756 1.0 M n upregulated - - - g240.t1,NAT6 PF00583 - - - - GO:0008080,GO:0008152 - - - Cre11.g467665 - 1 18 0.465897304943 1.0 1 18 0.442173282756 1.0 O n - 6 - - g11595.t1,Cre18.g745650.t1.1 PF01833,PF10162 PTHR25069,PTHR25069:SF115 KOG3544 - - GO:0005515 AT1G49490.1 - Leucine-rich repeat (LRR) family protein Cre14.g614400 SRH23 - 1 18 0.465897304943 1.0 1 18 0.442173282756 1.0 O n - 8 - - g14804.t1,SRH23 PF08797,PF00271,PF00097,PF00176 PTHR10799,PTHR10799:SF61 KOG1001 - - GO:0003676,GO:0008270,GO:0016818,GO:0004386,GO:0005524,GO:0003677 AT5G05130.1 - DNA/RNA helicase protein Cre10.g449750 PKS1 - 1 18 0.465897304943 1.0 1 18 0.442173282756 1.0 O n - 10 - - g11056.t1,PKS1 PF00501,PF00109,PF02801,PF08659,PF00107,PF00550 PTHR11712,PTHR11712:SF58 KOG1176 - - GO:0003824,GO:0008152,GO:0009058,GO:0008270,GO:0016491,GO:0055114,GO:0048037 AT3G16910.1 AAE7,ACN1 acyl-activating enzyme 7 Cre01.g023350 THO2 - 1 17 0.447976284129 1.0 0 18 1.0 1.0 C n - 7 Oligoendopeptidase Belongs to M3 family of metalloproteases, like thimet oligopeptidase, oligopeptidase F; most similar to eubacterial homologues. Previously annotated as THO2 but this conflicts with series for Tho complex subunits g539.t1 PF01432 - - - - GO:0004222,GO:0006508 - - - Cre12.g500650 RNB2 - 1 17 0.447976284129 1.0 0 18 1.0 1.0 C Y - 2 3\'-5\' exoribonuclease II Expressed conserved 3\'-5\' Exoribonuclease II; RNase R. Genbank accession EF431887, PMID: 17351118. Chloroplast targeting experimentally verified. g12563.t1,Cre12.g500650.t1.1 PF00773 PTHR23355:SF5,PTHR23355 - - - GO:0003723,GO:0004540 AT5G02250.1 ATMTRNASEII,EMB2730,RNR1 Ribonuclease II/R family protein Cre04.g225200 - 1 19 0.483236193898 1.0 1 19 0.459046636041 1.0 M n downregulated 15 - - g4922.t1 - - - - - - - - - Cre12.g518350 CYG18 - 1 19 0.483236193898 1.0 1 19 0.459046636041 1.0 SP n - 16 Adenylate/guanylate cyclase Protein has potential GAF domain and C-terminal domain similar to guanylyl cyclase family member (gcy-38) [Caenorhabditis elegans]. Contains domain similarity to protease inhibitor I4, serpin g12782.t1 PF00211 PTHR11920:SF130,PTHR11920 KOG0870 - - GO:0009190,GO:0016849,GO:0035556 - - - Cre09.g400850 CTL4 - 1 19 0.483236193898 1.0 1 19 0.459046636041 1.0 SP n - 18 Putative polycystin cation channel Putative polycystin cation channel. Contains C-type lectin domain responsible for carbohydrate binding activity (PMID: 16336259) g9250.t1,CTL4 PF08016,PF01822,PF09458 - KOG4462 - - GO:0005529,GO:0007155 AT3G19020.1 - Leucine-rich repeat (LRR) family protein Cre16.g658900 TRP10 - 1 19 0.483236193898 1.0 1 19 0.459046636041 1.0 O n - 15 Transient receptor potential ion channel protein Transient potential receptor channel;putative cation (not K+) channel g15918.t1,TRP10 - - - - - - - - - Cre08.g375801 - 1 18 0.465897304943 1.0 0 19 1.0 1.0 M n - 12 - - g8854.t1 - - - - - - - - - Cre13.g588650 - 1 20 0.500011871414 1.0 1 20 0.475409277023 1.0 SP n - 17 - - g14441.t1,Cre13.g588650.t1.1 - - - - - - - - - Cre14.g633300 - 1 20 0.500011871414 1.0 1 20 0.475409277023 1.0 SP n - 16 - - g15268.t1 PF01549 - - - - - AT4G25600.1 - Oxoglutarate/iron-dependent oxygenase Cre12.g536050 ALA1 - 0 21 1.0 1.0 1 20 0.475409277023 1.0 O n - 17 Phospholipid-transporting ATPase P-type ATPase; putative phospholipid-transporting ATPase (Aminophospholipid flippase) g13183.t1,Cre12.g536050.t1.1,ALA1 PF00122 PTHR24092:SF18,PTHR24092 KOG0206 - - GO:0000166,GO:0046872 AT3G27870.1 - ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein Cre12.g552700 - 1 20 0.500011871414 1.0 1 20 0.475409277023 1.0 SP n upregulated 2 - - g13484.t1 PF00530 PTHR19331 KOG2748 - - GO:0005044,GO:0016020 AT2G20960.1 pEARLI4 Arabidopsis phospholipase-like protein (PEARLI 4) family Cre13.g589450 - 29 1015 0.478838005791 1.0 32 1012 0.927141391914 1.0 O n upregulated 2 - - g14461.t1,Cre13.g589450.t1.1 PF00092,PF08487 PTHR10338,PTHR10338:SF8 - - - GO:0005515 - - - Cre04.g226700 - 1 19 0.483236193898 1.0 0 20 1.0 1.0 SP n - 17 - - g4961.t1,Cre04.g226700.t1.1 - - - - - - - - - Cre17.g726850 - 1 21 0.516242642895 1.0 1 21 0.491276673287 1.0 O n upregulated 2 - - g17574.t1,Cre17.g726850.t1.1 PF05731 PTHR14202 KOG4465 - K11089 GO:0003723,GO:0030529 - - - Cre12.g510350 BLZ17 - 1 21 0.516242642895 1.0 1 21 0.491276673287 1.0 C n - - - - g12342.t1,BLZ17 PF08016 - - - - - - - - Cre13.g586650 FXL1 - 1 21 0.516242642895 1.0 1 21 0.491276673287 1.0 M n downregulated 11 FixL-like PAS domain protein - g14394.t1,FXL1 PF00989 PTHR10919:SF179,PTHR10919 - - - GO:0006355 - - - Cre12.g537500 - 1 21 0.516242642895 1.0 1 21 0.491276673287 1.0 O n - 16 - - g13217.t1 PF02383 PTHR11200:SF9,PTHR11200 - - - GO:0042578 AT1G22620.1 ATSAC1 Phosphoinositide phosphatase family protein Cre05.g241202 - 0 22 1.0 1.0 1 21 0.491276673287 1.0 O n - 15 - - g5561.t1 PF00648 PTHR10183,PTHR10183:SF154 - - - GO:0004198,GO:0005622,GO:0006508 AT1G55350.1 ATDEK1,DEK1,EMB1275,EMB80 calpain-type cysteine protease family Cre13.g584450 - 0 23 1.0 1.0 1 22 0.506663823719 1.0 SP n - 16 - - g14346.t1, g14346.t2 PF08263 PTHR24420,PTHR24420:SF488 KOG3815 - - - AT5G65700.1 BAM1 Leucine-rich receptor-like protein kinase family protein Cre10.g427850 - 1 22 0.531946217979 1.0 1 22 0.506663823719 1.0 C n - 18 - - g10567.t1 PF00989 PTHR10919:SF179,PTHR10919 KOG4462 - - GO:0006355 - - - Cre08.g380151 - 1 22 0.531946217979 1.0 1 22 0.506663823719 1.0 M n - 8 - - g8948.t1,Cre08.g380150.t1.3 PF00628 - - - - GO:0005515 AT3G01460.1 ATMBD9,MBD9 methyl-CPG-binding domain 9 Cre17.g723500 - 1 22 0.531946217979 1.0 1 22 0.506663823719 1.0 O n - 17 - - g17500.t1 PF01061,PF08370,PF00005 PTHR19241,PTHR19241:SF10 KOG0065 - - GO:0016020,GO:0005524,GO:0016887 AT2G29940.1 ATPDR3,PDR3 pleiotropic drug resistance 3 Cre11.g476650 PUL1 - 1 22 0.531946217979 1.0 1 22 0.506663823719 1.0 C Y - 11 Pullulanase-type starch debranching enzyme - g11839.t1 PF00128,PF11852,PF02922,PF03714 PTHR10357:SF22,PTHR10357 KOG0470 - - GO:0003824,GO:0005975,GO:0043169,GO:0004553,GO:0030246 AT5G04360.1 ATLDA,ATPU1,LDA,PU1 limit dextrinase Cre02.g095200 - 1 22 0.531946217979 1.0 1 22 0.506663823719 1.0 O n upregulated 2 - - g1932.t1,Cre02.g095200.t1.1 PF00005 PTHR19211:SF30,PTHR19211 KOG0062 - - GO:0005524,GO:0016887 AT1G64550.1 ATGCN3,GCN3 general control non-repressible 3 Cre01.g004900 - 1 21 0.516242642895 1.0 0 22 1.0 1.0 O n - 14 - - g118.t1,Cre01.g004900.t1.1 PF01965 PTHR11019,PTHR11019:SF30 - - - - - - - Cre02.g109501 - 0 24 1.0 1.0 1 23 0.521585272697 1.0 SP n - 18 - - g2246.t1 - - - - - - - - - Cre06.g303150 PTK4 - 0 24 1.0 1.0 1 23 0.521585272697 1.0 O n - - Putative tyrosine kinase Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g7017.t1,PTK4 PF00069 PTHR23257,PTHR23257:SF282 KOG4462 - - GO:0004672,GO:0005524,GO:0006468 AT2G24360.1 - Protein kinase superfamily protein Cre01.g025400 - 1 23 0.547139730917 1.0 1 23 0.521585272697 1.0 O n - 13 - - g583.t1,Cre01.g025400.t1.1 - PTHR23053 - - - - - - - Cre09.g402256 - 1 23 0.547139730917 1.0 1 23 0.521585272697 1.0 O n - 2 - - g10013.t2, g10013.t1 PF01433 PTHR11533 - - - GO:0006508,GO:0008237,GO:0008270 AT4G33090.1 APM1,ATAPM1 aminopeptidase M1 Cre02.g095550 - 1 22 0.531946217979 1.0 0 23 1.0 1.0 M n - 10 - - g1940.t1 PF00092,PF07728 PTHR14187:SF34,PTHR14187 - - - GO:0005515,GO:0005524,GO:0016887 AT1G67120.1 - ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding Cre17.g706050 - 1 24 0.561839758461 1.0 1 24 0.536055123831 1.0 SP n - 11 - - g17113.t3, g17113.t2, g17113.t1 PF00530 PTHR19331,PTHR19331:SF377 KOG4462 - - GO:0005044,GO:0016020 AT3G19020.1 - Leucine-rich repeat (LRR) family protein Cre07.g339500 - 1 25 0.576062338373 1.0 1 25 0.550087053255 1.0 SP n - 8 - - g7896.t1,Cre07.g339500.t1.1 - - - - - - - - - Cre06.g278212 CGL46 - 1 25 0.576062338373 1.0 1 25 0.550087053255 1.0 O Y - 11 Predicted protein Conserved expressed protein of unknown function g6354.t1,Cre13.g598850.t1.1,Cre13.g598850.t1.2,CGL46 - - - - - - AT4G24610.2 - - Cre13.g589350 FBB6 - 4 98 0.575794835226 1.0 4 98 0.554237142492 1.0 O n upregulated 8 Flagellar/basal body protein Conserved protein found in ciliated organisms, with an unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation g14458.t1,Cre13.g589350.t1.1,FBB6 PF00092,PF08487 PTHR10338,PTHR10338:SF8 - - - GO:0005515 - - - Cre16.g685450 DHC8 - 1 26 0.589822986947 1.0 1 26 0.563694322808 1.0 O n - 16 Flagellar inner arm dynein heavy chain, dynein e (monomeric) Flagellar inner arm dynein heavy chain, dynein e (monomeric). Identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714] g16388.t1 PF08393,PF07728,PF03028 PTHR10676,PTHR10676:SF138 KOG3595 - - GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 - - - Cre03.g210513 - 1 26 0.589822986947 1.0 1 26 0.563694322808 1.0 C n upregulated 2 - - g4462.t1,Cre19.g756100.t1.1,Cre19.g756100.t1.2 PF00724 PTHR22893,PTHR22893:SF13 KOG0134 1.3.1.42 K05894 GO:0010181,GO:0016491 AT1G76690.1 ATOPR2,OPR2 12-oxophytodienoate reductase 2 Cre17.g706700 - 1 26 0.589822986947 1.0 1 26 0.563694322808 1.0 SP n - 16 - - g17125.t2, g17125.t1 PF06011,PF01344 PTHR23244 - - - GO:0005515 AT1G74150.1 - Galactose oxidase/kelch repeat superfamily protein Cre05.g234661 BCS1 - 9 225 0.576302700645 1.0 7 227 1.0 1.0 SP n upregulated 2 Ubiquinol:cytochrome c oxidoreductase biogenesis factor Related to ubiquinol:cytochrome c oxidoreductase (Complex III) BCS1 biogenesis factor; similar to yeast Bcs1p mitochondrial protein required for expression of functional Rieske iron-sulfur protein; region related to AAA family ATPase [PMID: 15710684] g5380.t1,Cre24.g768900.t1.1,Cre24.g768900.t1.2,BCS1 PF00004 PTHR23070,PTHR23070:SF2 - - K08900 GO:0005524 AT2G18190.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre11.g476050 ODA2,DHC15,DYHG - 1 27 0.603136715807 1.0 1 27 0.576889792283 1.0 O n downregulated 16 Flagellar outer arm dynein heavy chain gamma Flagellar outer arm dynein heavy chain gamma, also known as PF28. An ATPase/microtubule motor containing IQ motifs in N-terminal region and is phosphorylated on AAA domain. Previously annotated as ODA2 g11825.t1,Cre11.g476050.t1.1,ODA2,DYHG PF08385,PF07728,PF03028 PTHR10676,PTHR10676:SF35 KOG3595 - - GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 - - - Cre02.g095076 MFT10 - 1 26 0.589822986947 1.0 0 27 1.0 1.0 M n upregulated 17 Major facilitator superfamily transporter, involved in circadian rhythm control Major facilitator superfamily transporter. Matsuo et al.\'s (2008) roc39 (rhythm of chloroplast) circadian rhythm mutant locus maps here g1850.t1,Cre11.g471500.t1.1,Cre11.g471500.t1.2,MFT10 PF07690 PTHR24004,PTHR24004:SF23 KOG0255 - - GO:0016021,GO:0055085 AT5G13740.1 ZIF1 zinc induced facilitator 1 Cre13.g591300 - 1 26 0.589822986947 1.0 0 27 1.0 1.0 SP n - 16 - - g14500.t1 - - - - - - - - - Cre10.g441650 - 1 29 1.0 1.0 1 29 0.602094834441 1.0 SP n - - - - g10867.t1 PF06650 - - - - GO:0008104 - - - Cre04.g219700 BBS9 - 1 29 1.0 1.0 1 29 0.602094834441 1.0 O n - 13 Bardet-Biedl syndrome-9 associated protein Similar to Bardet-Biedl syndrome protein 9 in humans g4788.t2,BBS9, g4788.t3,BBS9, g4788.t1,BBS9 - PTHR20991 KOG3679 - - - - - - Cre10.g435400 - 0 30 0.625896729901 1.0 1 29 0.602094834441 1.0 O n - 9 - - g10738.t1,Cre10.g435400.t1.1 PF03398 PTHR12161:SF4,PTHR12161 - - - - AT1G34220.2 - Regulator of Vps4 activity in the MVB pathway protein Cre03.g211185 - 1 30 1.0 1.0 1 30 0.61412822525 1.0 O n upregulated 16 - - g4469.t1,Cre19.g756400.t1.1 - - - - - - - - - Cre06.g293100 - 4 135 1.0 1.0 5 134 0.616567828133 1.0 O n upregulated 2 - - g6789.t1,Cre06.g293100.t1.1 PF09177 PTHR12380 - - - GO:0016020,GO:0048193 AT1G28490.1 ATSYP61,OSM1,SYP61 syntaxin of plants 61 Cre11.g467737 - 0 30 0.625896729901 1.0 0 30 1.0 1.0 C n - 11 - - g11667.t1,Cre22.g764700.t1.1 - - - - - - AT5G66030.2 ATGRIP,GRIP Golgi-localized GRIP domain-containing protein Cre16.g656150 - 0 30 0.625896729901 1.0 0 30 1.0 1.0 SP n upregulated 17 - - g15860.t1,Cre16.g656150.t1.1 PF07690 PTHR24003:SF218,PTHR24003 KOG2816 - - GO:0016021,GO:0055085 AT2G16970.1 MEE15 Major facilitator superfamily protein Cre06.g296700 HYDG1,HYDG - 0 30 0.625896729901 1.0 0 30 1.0 1.0 C n downregulated 13 Hydrogenase assembly factor/biotin synthase Related to thiazole biosynthesis protein thiH/O. Pfam motif found in thiamin and biotin biosynthesis genes. Radical SAM protein required for the assembly of an active [Fe]-hydrogenase [PMID: 15082711]. Previously annotated as HYDG g6861.t1,Cre06.g296700.t1.1,HYDG PF06968 PTHR22976,PTHR22976:SF2 - - - GO:0051186,GO:0051536 - - - Cre03.g185050 FAP53 - 0 30 0.625896729901 1.0 0 30 1.0 1.0 O n - 13 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g3835.t1 - - - - - - - - - Cre10.g455750 SRH19 - 0 33 0.62724556515 1.0 0 33 0.626326389273 1.0 M n - 8 - - g11184.t1,SRH19 PF00097,PF00176 PTHR10799,PTHR10799:SF189 KOG1001 - - GO:0003677,GO:0005524 AT5G22750.1 RAD5 DNA/RNA helicase protein Cre02.g107350 DHC4 - 0 32 0.626423947207 1.0 0 32 1.0 1.0 M n - 16 Dynein heavy chain 4, novel minor type dynein (monomeric) Flagellar inner arm dynein heavy chain (monomeric). Has not been identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714]. Novel minor type found exclusively at the flagellar basal portion g2201.t1 PF08393,PF07728,PF03028 PTHR10676,PTHR10676:SF138 KOG3595 - - GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 AT2G22720.2 - SPT2 chromatin protein Cre06.g278157 - 0 33 0.62724556515 1.0 1 32 1.0 1.0 C n upregulated 10 - - g6300.t1,Cre13.g596200.t1.1,Cre13.g596200.t1.2 PF03747 PTHR16222 - - - - - - - Cre07.g347600 - 0 36 0.631656867266 1.0 0 36 0.628207341368 1.0 M n - 10 - - g8089.t1, g8089.t2 - PTHR11059 - - - - - - - Cre12.g521300 - 1 36 1.0 1.0 0 37 0.629426945489 1.0 O n - 12 - - g12842.t1,Cre12.g521300.t1.1 - - - - - - - - - Cre12.g555950 DHC11 - 0 39 0.638541494382 1.0 0 39 0.632645703502 1.0 O n - 13 Putative flagellar inner arm dynein heavy chain, novel minor type dynein (monomeric) Putative flagellar inner arm dynein heavy chain, novel minor type dynein (monomeric). Has not been identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714]; novel minor type found exclusively at the flagellar basa g13413.t1,Cre12.g555950.t1.1,DHC11 PF08393,PF07728,PF03028 PTHR10676,PTHR10676:SF138 KOG3595 - - GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 - - - Cre06.g278108 - 1 39 1.0 1.0 0 40 0.634611304043 1.0 M n - 15 N-acetyltransferase N-acetyltransferase related to GCN5 g6251.t2,Cre13.g593900.t1.1,Cre13.g593900.t1.2, g6251.t1,Cre13.g593900.t2.1 PF00583 - - - - GO:0008080,GO:0008152 - - - Cre01.g044800 PFL1 - 1 41 1.0 1.0 0 42 0.639176843832 1.0 C n - 16 Pyruvate-formate lyase Pyruvate-formate lyase; may contain organelle targeting peptide; corresponds to GI:585666 (a C-terminal fragment), induced under phosphate deprivation; also known as formate acetyltransferase. Genbank AJ620191, GI:92084841; PMID: 16452484. Characterized g1001.t1,Cre01.g044800.t1.1 PF01228,PF02901 - - - - GO:0003824,GO:0008152,GO:0005737,GO:0006006,GO:0008861 - - - Cre04.g216850 TUA2 - 0 42 0.647394189519 1.0 1 41 1.0 1.0 O n - 11 Alpha tubulin 2 Alpha tubulin 2 [GI:27358004; PMID: 3855249, PMID: 3460413, PMID: 14676280]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145]. g4512.t1,Cre04.g216850.t1.1 PF03953,PF00091 PTHR11588 KOG1376 - K07374 GO:0003924,GO:0005525,GO:0006184,GO:0043234,GO:0051258,GO:0005874,GO:0007017 AT1G50010.1 TUA2 tubulin alpha-2 chain Cre02.g093600 TEH3 - 1 44 1.0 1.0 0 45 0.647398135291 1.0 O n - 16 - - g1768.t1,Cre02.g093600.t1.1,TEH3 PF03061 - - - - - - - - Cre04.g217930 - 2 46 0.66957018483 1.0 1 47 1.0 1.0 O n upregulated 16 - - g4561.t2,Cre03.g210150.t1.1,Cre03.g210150.t1.2, g4561.t1,Cre03.g210150.t2.1 PF06911 PTHR21068:SF12,PTHR21068 - - - - AT4G35985.1 - Senescence/dehydration-associated protein-related Cre02.g093800 NRX3 - 1 51 1.0 1.0 2 50 0.671540449767 1.0 O n upregulated 2 Nucleoredoxin Related to animal thioredoxin, nucleoredoxin g1772.t2,NRX3, g1772.t1,Cre02.g093800.t1.1,NRX3 - PTHR13871,PTHR13871:SF20 - - - - AT1G60420.1 - DC1 domain-containing protein Cre16.g661626 - 2 51 0.690649562802 1.0 2 51 0.675350365104 1.0 O n - 17 - - g15976.t1,Cre16.g661626.t1.1,Cre16.g661631.t1.2 - - - - - - - - - Cre17.g719950 - 2 48 0.677787868568 1.0 1 49 1.0 1.0 C n - 16 - - g17425.t1,Cre17.g719950.t1.1 - - - - - - - - - Cre02.g095080 - 2 48 0.677787868568 1.0 1 49 1.0 1.0 SP n - 12 - - g1854.t1,Cre11.g471700.t1.1,Cre11.g471700.t1.2 PF01145 PTHR14165,PTHR14165:SF2 - - - - - - - Cre06.g265950 DHC3 - 1 54 1.0 1.0 2 53 0.683172016859 1.0 O n - 16 Flagellar inner arm dynein heavy chain, novel minor type dynein (monomeric) Flagellar inner arm dynein heavy chain (monomeric). Has not been identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714]; novel minor type found exclusively at the flagellar basal portion. Most similar to DHC7 g5970.t1 PF08393,PF07728,PF03028 PTHR10676,PTHR10676:SF136 KOG3595 - - GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 - - - Cre04.g217951 LCI33 - 15 480 0.898663170825 1.0 13 482 0.693237140722 1.0 O n upregulated 17 Low-CO2-inducible protein Low-CO2 inducible gene (homologous to unknown protein in Trypanosoma brucei) revealed by cDNA array analyses g4581.t1,Cre03.g209350.t1.1,Cre03.g209350.t1.2,LCI33 - PTHR13555,PTHR13555:SF2 - - - - - - - Cre09.g400312 - 1 57 1.0 1.0 2 56 0.695299253734 1.0 C n - 14 - - g9262.t1 PF00400 PTHR22847:SF228,PTHR22847 KOG0299 - - - AT5G49430.1 - WD40/YVTN repeat-like-containing domain;Bromodomain Cre09.g390615 FAP12 - 1 71 0.732410823968 1.0 1 71 0.727378803418 1.0 O n - 12 Triacylglycerol lipase and Flagellar Associated Protein Triacylglycerol lipase. Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. Previously annotated as FAP12 g9673.t1,Cre02.g126050.t1.1,Cre02.g126050.t1.2 PF01764 PTHR21493,PTHR21493:SF22 - - - GO:0004806,GO:0006629 AT4G16070.1 - Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 Cre12.g554400 - 3 86 0.766165252372 1.0 3 86 0.752289790801 1.0 M n upregulated 16 - - g13445.t1 - - - - - - - - - Cre02.g115508 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g2388.t1 PF00560 PTHR23155 KOG0472 - - GO:0005515 AT3G26500.1 PIRL2 plant intracellular ras group-related LRR 2 Cre17.g716101 POLL1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g17335.t1,Cre17.g716100.t1.3,POLL1 PF10391 PTHR11276:SF16,PTHR11276 - 2.7.7.7,4.2.99.- K03512 GO:0016779 AT1G10520.1 - DNA polymerase lambda (POLL) Cre07.g334450 EFH4 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - - - - g7788.t1,EFH4 - PTHR23050:SF89,PTHR23050 - - - - - - - Cre16.g654800 - 0 20 1.0 1.0 0 20 1.0 1.0 SP n - 9 - - g15829.t1 - - - - - - AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre12.g556600 GAPN1,GAP4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 5 Glyceraldehyde 3-phosphate dehydrogenase, nonphosphorylating Glyceraldehyde 3-phosphate dehydrogenase, nonphosphorylating, NADP-dependent (EC 1.2.1.9), probably cytosolic; based on similarity to GAPN from Nicotiana plumbaginifolia (Swissprot P93338). Previously annotated as GAPN1 g13400.t1,Cre12.g556600.t1.1,GAP4 PF00171 PTHR11699,PTHR11699:SF29 KOG2450 1.2.1.9 K00131 GO:0008152,GO:0016491,GO:0055114 AT2G24270.4 ALDH11A3 aldehyde dehydrogenase 11A3 Cre03.g152950 PUS12 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g3114.t1,PUS12 PF01416 PTHR11142 KOG2554 - - GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT2G30320.1 - Pseudouridine synthase family protein Cre03.g157350 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g3213.t1 - - - - - - - - - Cre06.g298950 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g6916.t1,Cre06.g298950.t1.1 PF10343 PTHR21314 KOG2524 - - - - - - Cre13.g590450 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g14480.t1 - - - - - - - - - Cre07.g316992 - 0 18 1.0 1.0 0 18 1.0 1.0 C n - 13 - - g7327.t2, g7327.t1, g7327.t3,Cre07.g316992.t1.1, g7327.t4, g7327.t5 PF00702, PF00122 PTHR24092:SF18,PTHR24092 KOG0206 - - GO:0003824,GO:0008152, GO:0000166,GO:0046872 AT3G27870.1, AT1G59820.1 ALA3 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein, aminophospholipid ATPase 3 Cre16.g690431 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g16866.t2,Cre01.g072200.t2.1, g16866.t1,Cre01.g072200.t1.1,Cre01.g072200.t1.2 PF01494 PTHR10617:SF8,PTHR10617 KOG2614 - - GO:0004497,GO:0055114 - - - Cre01.g040100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 12 - - g895.t1,Cre01.g040100.t1.1 - - - - - - AT1G03250.1 - - Cre01.g048350 CGL53,EBM1 - 0 1 1.0 nan 0 1 1.0 nan C Y - - Mannan endo-1,4-beta-mannosidase Mannan endo-1,4-beta-mannosidase. Green-lineage conserved protein related to carbohydrate hydrolase. Previously annotated as CGL53 g1074.t1,Cre01.g048350.t1.1,EBM1 PF00150 - - - - GO:0004553,GO:0005975 AT4G28320.1 - Glycosyl hydrolase superfamily protein Cre03.g167351 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g3435.t1,Cre03.g167350.t1.2 - - - - - - - - - Cre09.g400200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9265.t1 - - - - - - - - - Cre09.g387578 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 - - g9590.t1,Cre02.g122050.t1.1 PF10497 - - - - - AT4G37110.1 - Zinc-finger domain of monoamine-oxidase A repressor R1 Cre10.g442150 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g10879.t1 - - - - - - - - - Cre05.g243150 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 13 - - g5283.t1 PF00484,PF04357 - - 4.2.1.1 K01673 GO:0004089,GO:0008270,GO:0015976 AT2G25660.1 emb2410 embryo defective 2410 Cre12.g537100 TSV - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 2 - - g13207.t1,Cre12.g537100.t1.1,TSV PF00133,PF08264,PF00043 PTHR11946,PTHR11946:SF5 KOG0432 6.1.1.9 K01873 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418,GO:0004832,GO:0006438 AT1G14610.1 TWN2,VALRS valyl-tRNA synthetase / valine--tRNA ligase (VALRS) Cre02.g116850 HLM6,SETb - 0 1 1.0 nan 0 1 1.0 nan O n - - Histone-lysine N-methyltransferase Protein contains an interrupted SET domain with very weak similarity to Arabidopsis thaliana ASHR2, SET39, SDG39 (At2g19640) and Zea mays SET123. Previously annotated as SETb. ChromoDB SDG3406 g2419.t1,Cre02.g116850.t1.1,HLM6,SETb PF00856 PTHR12197 - - - GO:0005515 AT5G06620.1 ATXR4,SDG38 SET domain protein 38 Cre09.g415600 - 0 1 1.0 nan 0 1 1.0 nan C n - 3 - - g10289.t2, g10289.t1 PF00686 PTHR15048 - - - GO:0003824,GO:0005975 AT5G01260.2 - Carbohydrate-binding-like fold Cre10.g447500 KIN12-3,KIN16-2 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 10 - - g11006.t1,KIN12-3,KIN16-2 PF00225 PTHR24115,PTHR24115:SF358 - - - GO:0003777,GO:0005524,GO:0007018 AT2G28620.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre08.g381800 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 2 - - g8984.t1 PF00293 PTHR23422 KOG0142 - - GO:0016787 AT1G79690.1 atnudt3,NUDT3 nudix hydrolase homolog 3 Cre17.g711650 NUDC1,NUDC,NUD1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Nuclear distribution/movement family protein Nuclear distribution/movement family protein, orthologous to NudC protein from Aspergillus. May be associated with dynein g17235.t1,Cre17.g711650.t1.1,NUD1,NUDC PF04969 PTHR12356 KOG2265 - - - AT5G53400.1 BOB1 HSP20-like chaperones superfamily protein Cre07.g357500 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 16 - - g8313.t1 - - - - - - - - - Cre16.g676085 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 - - g16736.t1,Cre01.g066600.t1.1 - - - - - - - - - Cre13.g580350 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g14257.t1,Cre13.g580350.t1.1 - - - - - - - - - Cre06.g278132 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g6277.t1,Cre13.g595050.t1.1 - - - - - - - - - Cre06.g278131 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g6276.t1,Cre13.g595000.t1.1 - PTHR24006,PTHR24006:SF262 - - - - AT5G06600.3 UBP12 ubiquitin-specific protease 12 Cre13.g602850 SRS11,SRP23 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 RNA recognition motif containing protein, putative splicing factor RNA recognition motif containing protein (RRM, RBD, or RNP domain in N-terminus), putative splicing factor. Previously annotated as SRP23 for an SR-related protein, but the protein product for this gene model lacks SR repeats and the name conflicts with g14539.t1,SRP23,SRS11 PF00076 PTHR15241 KOG0130 - K12885 GO:0003676 AT1G07350.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre06.g278137 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g6282.t1,Cre13.g595350.t1.1,Cre13.g595350.t1.2 - - - - - - - - - Cre03.g168000 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g3455.t1,Cre03.g168000.t1.1 - - - - - - - - - Cre02.g114750 CDPK6 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 14 - - g2371.t1,Cre02.g114750.t1.1,CDPK6 PF00069,PF00036 PTHR24347,PTHR24347:SF13 KOG0032 2.7.11.1 K13412 GO:0004672,GO:0005524,GO:0006468 AT3G20410.1 CPK9 calmodulin-domain protein kinase 9 Cre02.g098350 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - - - g2000.t1 PF00394,PF07731,PF07732 PTHR11709,PTHR11709:SF14 KOG1263 - - GO:0016491,GO:0055114,GO:0005507 AT5G01050.1 - Laccase/Diphenol oxidase family protein Cre08.g372050 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g8715.t1,Cre08.g372050.t1.1 - - - - - - - - - Cre11.g469187 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g11778.t1 - - KOG4549 - - - - - - Cre03.g153300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g3122.t1 - - - - - - - - - Cre03.g153306 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3123.t1,Cre03.g153306.t1.1 - - - - - - - - - Cre07.g314833 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g7284.t1 - - - - - - - - - Cre10.g418550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g10362.t1,Cre10.g418550.t1.1 - - - - - - - - - Cre16.g658075 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g15901.t1 PF00293 PTHR11839 - 3.6.1.13 K01515 GO:0016787 - - - Cre06.g284900 CYN6,CYN20-1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID:15047905]; secretory pathway; similar to At5g58710 (ROC7, AtCYP20-1) and At2g29960 (Cyp5, AtCYP19-4). Previously annotated as CYN20-1 g6624.t1,Cre06.g284900.t1.1,CYN6, g6624.t2,CYN6 PF00160 PTHR11071 KOG0880 5.2.1.8 K01802 GO:0003755,GO:0006457 AT2G29960.1 ATCYP5,CYP19-4,CYP5 cyclophilin 5 Cre05.g242200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g5309.t1 PF00400 PTHR26208,PTHR26208:SF55 KOG0295 - K03130 - AT3G16650.1 - Transducin/WD40 repeat-like superfamily protein Cre04.g232502 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 17 - - g5063.t1,Cre32.g781150.t1.1 - - - - - - - - - Cre07.g339000 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g7885.t1 PF02341 - - - - - AT4G04330.1 - Chaperonin-like RbcX protein Cre17.g734596 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g17766.t1,Cre15.g644950.t1.1,Cre15.g644950.t1.2 - - - - - - - - - Cre17.g712300 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g17249.t1 - - - - - - - - - Cre08.g363750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g8519.t1 PF00036 PTHR23056,PTHR23056:SF4 KOG0027 - K06268 - AT1G64480.1 CBL8 calcineurin B-like protein 8 Cre14.g610850 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 4 - - g14726.t1 - - - - - - - - - Cre17.g712900 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 14 - - g17262.t1 - - - - - - - - - Cre15.g637216 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g15368.t1 - - - - - - - - - Cre01.g011376 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g284.t1 - - - - - - - - - Cre16.g677350 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g16568.t1,Cre16.g677350.t1.1 - PTHR19297,PTHR19297:SF2 - - - - - - - Cre10.g422100 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g10443.t1,Cre10.g422100.t1.1 - - - - - - - - - Cre03.g178450 CPN10 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 5 Chaperonin 10 Cochaperonin for CPN60 with MW of the mature protein of 10 kD; heptamers of Cpn10-like cochaperonins bind to one of the two Cpn60 heptameric rings and trigger ATP hydrolysis; CPN10 is closely related to mitochondrial CPN10 from Arabidopsis, thus very like g3695.t1,Cre03.g178450.t1.1,CPN10 PF00166 PTHR10772 KOG1641 - K04078 GO:0005737,GO:0006457 AT1G23100.1 - GroES-like family protein Cre17.g724550 DIP13 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Deflagellation inducible protein Deflagellation inducible protein, 13 kDa [gi:4689324, PMID: 12640030]; found in the flagellar proteome [PMID: 15998802]; similar to Sjogren\'s syndrome nuclear autoantigen 1. g17523.t1,Cre17.g724550.t1.1 - - - - - - - - - Cre08.g377100 ADK6 - 0 1 1.0 nan 0 1 1.0 nan M n - 6 Adenylate kinase Putative adenylate kinase g8881.t1,Cre08.g377100.t1.1,ADK6 PF00406 PTHR23359 KOG3078 2.7.4.3 K00939 GO:0005524,GO:0006139,GO:0019205 AT2G37250.1 ADK,ATPADK1 adenosine kinase Cre06.g251550 SPP3,SPP1C - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 2 Signal peptide peptidase SppA, protease IV, signal peptide peptidase, serine endopeptidase of S49 family (ClpP clan)1; expressed only in zygotes; nt sequence corresponds to probe 2 of MT+ locus in Ferris [PMID: 11805055], except for 6 missing nt in second exon (CDS) and a missing g5633.t1,SPP1C,SPP3 PF01343 PTHR10381,PTHR10381:SF2 - - - GO:0006508,GO:0008233 AT1G73990.1 SPPA,SPPA1 signal peptide peptidase Cre12.g506050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g12446.t1 PF05843 PTHR19980 KOG1914 - K14408 GO:0005634,GO:0006397 AT1G17760.1 ATCSTF77,CSTF77 Tetratricopeptide repeat (TPR)-like superfamily protein Cre01.g025900 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g595.t1,Cre01.g025900.t1.1 PF00415 PTHR22870 KOG1427 - - - AT5G08710.1 - Regulator of chromosome condensation (RCC1) family protein Cre09.g392106 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9450.t1,Cre09.g392100.t1.3 - - - - - - - - - Cre09.g392105 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g9449.t1,Cre09.g392105.t1.1 - - - - - - - - - Cre17.g698450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 - - g16939.t1,Cre17.g698450.t1.1 PF00763,PF02882 PTHR10025 KOG0089 - - GO:0003824,GO:0009396 AT3G12290.1 - Amino acid dehydrogenase family protein Cre04.g218526 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g4763.t1 - - - - - - - - - Cre02.g095040 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g1810.t1 - - - - - - - - - Cre02.g095045 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 9 - - g1819.t1,Cre11.g470350.t1.1 PF00628 PTHR12706 KOG1513 - - GO:0005515 AT1G79350.1 EMB1135 RING/FYVE/PHD zinc finger superfamily protein Cre02.g095047 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g1822.t1 - - - - - - - - - Cre17.g704100 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 - - g17070.t1,Cre17.g704100.t1.1 - - - - - - - - - Cre17.g709750 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g17190.t1 PF00069 PTHR24055:SF164,PTHR24055 KOG0594 - - GO:0004672,GO:0005524,GO:0006468 AT1G73670.1 ATMPK15,MPK15 MAP kinase 15 Cre13.g607000 XHP1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 5 - - g14636.t1,Cre13.g607000.t1.1,XHP1 PF01546 PTHR11014:SF2,PTHR11014 - 3.4.13.3 K01270 GO:0006508,GO:0008152,GO:0016787 - - - Cre06.g289450 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g6717.t1 PF02141 PTHR15288 - - - - AT2G20320.1 - DENN (AEX-3) domain-containing protein Cre04.g214650 BGS5,GTR19 - 0 21 1.0 1.0 0 21 1.0 1.0 O n - 6 1,3-beta-D-glucan synthase 1,3-beta-D-glucan synthase and glycosyl transferase. Previously annotated as GTR19 g4680.t1,BGS5,GTR19 PF02364 PTHR12741 - - - GO:0000148,GO:0003843,GO:0006075,GO:0016020 AT5G13000.1 ATGSL12,gsl12 glucan synthase-like 12 Cre09.g395843 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g9820.t1,Cre02.g132450.t1.1 PF00092 PTHR13789,PTHR13789:SF63 - - - GO:0005515 AT3G54780.1 - Zinc finger (C3HC4-type RING finger) family protein Cre03.g189650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3928.t1 PF00569,PF02135,PF08214 PTHR13808 KOG0702 2.3.1.48 K04498 GO:0008270,GO:0003712,GO:0004402,GO:0005634,GO:0006355 AT1G79000.1 ATHAC1,ATHPCAT2,HAC1,PCAT2 histone acetyltransferase of the CBP family 1 Cre07.g338350 CPLD50 - 0 7 1.0 1.0 0 7 1.0 1.0 C Y upregulated 2 Predicted protein Conserved protein g7871.t1,Cre07.g338350.t1.1 - PTHR10072:SF29,PTHR10072 - - - - AT5G03900.2 - Iron-sulphur cluster biosynthesis family protein Cre02.g147550 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g2510.t1 - PTHR11584,PTHR11584:SF4 - - - - - - - Cre12.g492851 EBM7 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 8 - - g12094.t1,EBM7 PF00150 - - - - GO:0004553,GO:0005975 AT1G02310.1 MAN1 Glycosyl hydrolase superfamily protein Cre12.g492850 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 12 - - g12093.t1 PF10595 - - - - - - - - Cre11.g467738 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g11668.t1,Cre22.g764650.t1.1,Cre22.g764650.t1.2 PF04117 PTHR11266 KOG1944 - K13348 GO:0016021 AT4G33905.1 - Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Cre03.g187550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3885.t1 PF04858 - - - - GO:0005634,GO:0045892 - - - Cre16.g690991 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 Eukaryotic elongation factor 1, gamma chain Eukaryotic elongation factor 1, gamma chain. Previously annotated as ELF1G g16871.t2,Cre01.g072400.t2.1, g16871.t1,Cre01.g072400.t1.1,Cre01.g072400.t1.2 PF00647 - - - - GO:0003746,GO:0005853,GO:0006414 AT1G09640.1 - Translation elongation factor EF1B, gamma chain Cre11.g467730 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g11660.t2, g11660.t3, g11660.t1 - PTHR24608:SF49,PTHR24608 - - - - - - - Cre11.g467736 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g11666.t1,Cre22.g764750.t1.1,Cre22.g764750.t1.2 - PTHR10366,PTHR10366:SF1 - - - - - - - Cre11.g467735 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g11665.t1,Cre22.g764800.t1.1,Cre22.g764800.t1.2 - PTHR24608:SF49,PTHR24608 - - - - - - - Cre11.g467734 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11664.t1 PF00077 - - - - - - - - Cre14.g630700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g15188.t1,Cre14.g630700.t1.1, g15188.t2 PF07699 PTHR22727 - - - - - - - Cre12.g533900 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 15 - - g13132.t1 - - - - - - - - - Cre10.g421450 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g10429.t1 - - - - - - - - - Cre08.g374450 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 14 - - g8823.t1 - - - - - - - - - Cre06.g258450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g5810.t1, g5810.t2,Cre06.g258450.t1.1 - - - - - - - - - Cre07.g349250 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 - - g8126.t1,Cre07.g349250.t1.1 PF07883 - - - - - AT4G02980.1 ABP,ABP1 endoplasmic reticulum auxin binding protein 1 Cre12.g527550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 4 - - g12995.t1,Cre12.g527550.t1.1 - - - - - - - - - Cre06.g250600 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g5613.t1 - - - - - - - - - Cre02.g108300 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 16 - - g2220.t1 - - - - - - - - - Cre17.g703450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g17054.t1 - - - - - - - - - Cre10.g444086 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g10918.t1,Cre10.g444086.t1.1 - - - - - - - - - Cre04.g212550 TTL7 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g4727.t1,TTL7 PF03133 PTHR12241 - - - GO:0004835,GO:0006464 AT1G77550.1 - tubulin-tyrosine ligases;tubulin-tyrosine ligases Cre05.g244200 TMA1 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 15 - - g5251.t1,TMA1 PF08757 - - - - - - - - Cre16.g684550 HAR2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g16407.t1,HAR2 - PTHR22981,PTHR22981:SF21 - - - GO:0016491 AT1G17650.1 GLYR2,GR2 glyoxylate reductase 2 Cre15.g637750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g15379.t3, g15379.t2, g15379.t1 - - - - - - - - - Cre08.g360050 DUR1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - Urea carboxylase/allophanate hydrolase Urea carboxylase [EC:6.3.4.]; Allophanate hydrolase subunit 2; catalyses first reaction of ATP:urea amidolyase; homologous to C-terminus of yeast protein, whose N-terminus is homologous to DUR2, upstream divergent; in green algae, the two activities are s g8432.t1,DUR1, g8432.t2,DUR1 PF02682,PF02786,PF02785,PF00364,PF00289,PF02626 PTHR18866:SF67,PTHR18866 KOG0238 3.5.1.54,6.3.4.6 K14541 GO:0003824,GO:0005524,GO:0008152,GO:0016874 AT5G35360.1 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit Cre02.g145150 MAM3A - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 13 Protein putatively involved in mitochondrial biogenesis Contains a DUF21 transmembrane domain of unknown function and 2 CBS domains (found in Hemolysins and Mg2+/CO2 transporters CorB CorC); similarity to many Arabidopsis proteins and to yeast Mam3p (mitochondrial aberrant morphology), involved in mitochondria g2565.t2,MAM3A, g2565.t1,MAM3A PF00571,PF01595 PTHR12064 - - - GO:0005515 AT1G03270.1 - CBS domain-containing protein with a domain of unknown function (DUF21) Cre03.g145767 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 13 - - g2953.t1,Cre01.g059950.t2.1, g2953.t2,Cre01.g059950.t1.1 PF00570,PF01612 PTHR12124 - - - GO:0003676,GO:0005622,GO:0006139,GO:0008408 AT2G32415.1 - Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain Cre03.g205250 ELG4 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g4208.t1,ELG4 PF03016 PTHR11062,PTHR11062:SF13 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre08.g368700 RMT4 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g8641.t1,RMT4 PF09273,PF00856 PTHR13271 - - - GO:0005515 AT3G07670.1 - Rubisco methyltransferase family protein Cre02.g101100 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g2063.t1 PF09756 PTHR13270 KOG3054 - - - AT4G27120.1 - - Cre02.g089750 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g1676.t1,Cre02.g089750.t1.1 - - - - - - - - - Cre08.g370350 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g8679.t1,Cre08.g370350.t1.1 PF09409 - - - - - - - - Cre11.g475200 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 9 - - g11805.t1 - - - - - - - - - Cre01.g040350 MSH8 - 0 8 1.0 1.0 0 8 1.0 1.0 C n upregulated 4 - - g900.t1,MSH8 PF00488 PTHR11361,PTHR11361:SF67 - - - GO:0005524,GO:0006298,GO:0030983 AT5G54090.1 - DNA mismatch repair protein MutS, type 2 Cre07.g342000 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 16 - - g7947.t1 PF00651,PF01135 PTHR11579 KOG1661 - - GO:0005515,GO:0004719,GO:0006464 AT3G48330.1 ATPIMT1,PIMT1 protein-l-isoaspartate methyltransferase 1 Cre06.g281100 ROC94,MUT9 - 0 3 1.0 1.0 0 3 1.0 1.0 C Y - - Casein kinase-related serine/threonine kinase, transcription repression, involved in circadian rhythms Casein kinase-related serine/threonine kinase involved in transcriptional gene silencing (AAL60199) [PMID: 11782532]. Matsuo et al.\'s (2008) roc96 (rhythm of chloroplast) circadian mutant locus maps here g6537.t1,ROC94 PF00069 PTHR11909:SF20,PTHR11909 KOG1164 - - GO:0004672,GO:0005524,GO:0006468 AT2G25760.1 - Protein kinase family protein Cre04.g219600 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 - - g4786.t1,Cre04.g219600.t1.1 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 AT5G19330.1 ARIA ARM repeat protein interacting with ABF2 Cre17.g707750 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 17 - - g17146.t1,Cre17.g707750.t1.1 - PTHR12714 - - - - - - - Cre11.g479050 FKB15-1,FAP229,FKB1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase); secreted isoform; Target P prediction: TP length=23; [PMID: 15701785] g11894.t1,Cre11.g479050.t1.1,FKB1,FKB15-1 PF00254 PTHR10516 KOG0549 5.2.1.8 K09569 GO:0006457 AT5G48580.1 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 Cre12.g537371 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 10 - - g13214.t1,Cre12.g537371.t1.1 - - - - - - - - - Cre12.g536425 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g13191.t1,Cre12.g536425.t1.1 - - - - - - - - - Cre12.g503800 RMT5 - 0 3 1.0 1.0 0 3 1.0 1.0 C Y upregulated 4 - - g12493.t1 PF09273 PTHR13271 KOG1337 - - - AT3G07670.1 - Rubisco methyltransferase family protein Cre06.g292100 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g6767.t1,Cre06.g292100.t1.1 - - - - - - AT1G31410.1 - putrescine-binding periplasmic protein-related Cre17.g734961 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 2 - - g17784.t1, g17784.t2 PF05670,PF11923 PTHR15239 - - - - AT5G49930.1 emb1441 zinc knuckle (CCHC-type) family protein Cre01.g033500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g756.t1,Cre01.g033500.t1.1 - - - - - - - - - Cre08.g363500 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g8515.t1,Cre08.g363500.t1.1 PF04387 PTHR11035 KOG3187 - - - AT5G59770.1 - Protein-tyrosine phosphatase-like, PTPLA Cre05.g236300 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5433.t1 - - - - - - - - - Cre12.g545101 XDH1 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 17 - - g13658.t1,Cre12.g545050.t1.3,XDH1 PF02738,PF01315,PF03450,PF01799,PF00941,PF00111 PTHR11908,PTHR11908:SF8 KOG0430 1.17.1.4,1.17.3.2 K00106 GO:0016491,GO:0055114,GO:0046872,GO:0009055,GO:0051536 AT4G34890.1 ATXDH1,XDH1 xanthine dehydrogenase 1 Cre04.g227251 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g4972.t1,Cre04.g227250.t1.3 - - - - - - - - - Cre10.g461200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11307.t1 - - - - - - - - - Cre01.g026750 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 10 - - g613.t1 - - - - - - - - - Cre04.g218950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g4772.t1 PF00023 - - - - GO:0005515 AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre11.g476850 DRC4,PF2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 14 Component of dynein regulatory complex Component (DRC4) of dynein regulatory complex (DRC) of flagellar axoneme, originally identified by pf2 mutation [PMID: 12847082]; has similarity to mammalian growth-arrest specific gene product (Gas11/Gas8); component of dynein regulatory complex (DRC) of g11843.t1,Cre11.g476850.t1.1,PF2 - - - - - - - - - Cre02.g141700 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 14 - - g2656.t1 PF05517 - - - - - - - - Cre11.g477450 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 17 - - g11855.t1 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre10.g456800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g11209.t1 PF09733 - - - - - AT4G16810.1 - VEFS-Box of polycomb protein Cre16.g686950 CTF18 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 DNA damage repair and chromosome cohesion protein CTF18-related; an RFC complex required for sister chromatid cohesion contains the RFC1-like Ctf18 subunit. g16353.t1,Cre16.g686950.t1.1,CTF18 PF00004 PTHR13779,PTHR13779:SF3 - - K11269 GO:0005524 AT1G04730.1 CTF18 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre02.g147700 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 - - g2507.t1,Cre02.g147700.t1.1 PF01979 PTHR11271,PTHR11271:SF13 - - - GO:0016787 - - - Cre02.g096601 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g1962.t1 PF00515 PTHR26224,PTHR26224:SF44 - - - GO:0005515 AT1G62740.1 - stress-inducible protein, putative Cre08.g359100 TRM11,TMG14 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 1 - - g8411.t1,Cre08.g359100.t1.1,TMG14,TRM11 PF01170 PTHR13370 KOG2671 - - - AT3G26410.1 - methyltransferases;nucleic acid binding Cre16.g685901 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g16379.t1 PF08506,PF03378,PF03810 PTHR10997:SF8,PTHR10997 KOG1992 - - GO:0006886,GO:0005634,GO:0005737,GO:0008262,GO:0008283,GO:0008565 AT2G46520.1 - cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative Cre16.g685900 PRMT3,PRM3 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 Protein-/Histone-arginine N-methyltransferase Protein-/Histone-arginine N-methyltransferase, ChromDB PRMT3403; putative ortholog of Homo sapiens PRMT3 and Arabidopsis thaliana At3g12270; a cytoplasmic, type I ribosomal PRMT g16378.t1,Cre16.g685900.t1.1,PRM3 PF08241 PTHR11006:SF35,PTHR11006 KOG1499 2.1.1.- K11436 GO:0008152,GO:0008168 AT3G12270.1 ATPRMT3,PRMT3 protein arginine methyltransferase 3 Cre03.g178200 CCT10 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g3688.t1,CCT10 PF00118 - - - - GO:0005524,GO:0044267 - - - Cre01.g018750 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 15 - - g441.t1,Cre01.g018750.t1.1 - - - - - - - - - Cre04.g224750 VAM1,VAMP71 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 Endosomal R-SNARE protein, Vamp7/Nyv1-family (R.III) Endosomal R-SNARE protein, Vamp7/Nyv1-family (R.III). Expressed Protein. Class R.III SNARE, involved in Golgi/PM and Golgi/endosomal trafficking (PMID: 17596510). Most similar to VAMP72-family of land plants, part of 4-member gene family in Chlamydomona g4905.t1,Cre04.g224750.t1.1,VAM1,VAMP71 PF00957 PTHR21136,PTHR21136:SF46 KOG0859 - - GO:0016021,GO:0016192 AT3G54300.1 ATVAMP727,VAMP727 vesicle-associated membrane protein 727 Cre01.g010100 NAT7 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n - 16 - - g254.t1,Cre01.g010100.t1.1,NAT7 PF00583 - - - - GO:0008080,GO:0008152 - - - Cre13.g587600 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 7 - - g14415.t1,Cre13.g587600.t1.1 PF03423,PF00756 PTHR10907:SF13,PTHR10907 - - - - AT1G11720.2 ATSS3,SS3 starch synthase 3 Cre03.g174750 CYN26 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 6 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID: 15047905]; chloroplast thylakoid lumen; similar to At1g74070 (AtCYP26-2 g3609.t1,Cre03.g174750.t1.1 PF00160 PTHR11071,PTHR11071:SF130 KOG0880 - - GO:0003755,GO:0006457 AT1G74070.1 - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Cre13.g580650 PYP1 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 8 - - g14263.t1,Cre13.g580650.t1.1,PYP1 PF03095 PTHR10012 - - - GO:0019211 AT4G08960.1 - phosphotyrosyl phosphatase activator (PTPA) family protein Cre06.g283500 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 - - g6592.t1 - - KOG0963 - - - AT5G41140.1 - Myosin heavy chain-related protein Cre10.g460150 ERM9 - 0 9 1.0 1.0 0 9 1.0 1.0 O Y - 8 ERD4-related membrane protein Transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration) g11282.t1,Cre10.g460150.t1.1,ERM9 PF02714 PTHR13018:SF20,PTHR13018 - - - GO:0016020 AT4G02900.1 - ERD (early-responsive to dehydration stress) family protein Cre02.g098650 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g2006.t1 - - - - - - - - - Cre13.g572950 E2F2,E2FR1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 Transcription factor, E2F and DP-related Related to E2F and DP transcription factors, Chlamydomonas specific. Previously annotated as E2FR1 g14089.t1,E2FR1 PF02319,PF08781 - - - - GO:0003700,GO:0005667,GO:0006355 AT5G03415.1 ATDPB,DPB Transcription factor DP Cre09.g395473 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g9810.t1,Cre02.g131950.t1.1 - - - - - - - - - Cre01.g009900 CDJ3 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - Chloroplast DnaJ-like protein DnaJ-like protein, targeted to the chloroplast; contains N-terminal J-domain (pfam00226) and Ferredoxin domain (COG1141); described in Henselmann and Schroda, Diploma thesis, University of Freiburg. Characterized by Dorn et al. 2010 [PMID: 20113313] g250.t1 PF00226 PTHR25040:SF173,PTHR25040 - - - GO:0031072 AT2G42750.1 - DNAJ heat shock N-terminal domain-containing protein Cre06.g262200 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5891.t1,Cre06.g262200.t1.1 - - - - - - - - - Cre02.g086200 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 13 - - g1597.t1,Cre02.g086200.t1.1 - - - - - - - - - Cre01.g035900 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 7 - - g808.t1 - - - - - - - - - Cre12.g549900 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g13550.t1 - - - - - - - - - Cre19.g750297 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g18123.t1,Cre33.g783000.t1.1 PF01636 - - - - - - - - Cre02.g143627 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g2841.t1 - - - - - - - - - Cre03.g144404 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 - - g2884.t1,Cre01.g057250.t1.1 PF03133 PTHR12241,PTHR12241:SF62 - - - GO:0004835,GO:0006464 - - - Cre16.g689423 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g16857.t1,Cre01.g071800.t1.1,Cre01.g071800.t1.2 PF00892 PTHR13146 KOG3912 - - GO:0016020 - - - Cre04.g223400 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 14 - - g4875.t1,Cre04.g223400.t1.1 - - - - - - - - - Cre06.g271050 URN1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n downregulated 12 - - g6081.t1,URN1 PF01156 PTHR12304 KOG2938 - - - AT2G36310.1 URH1 uridine-ribohydrolase 1 Cre06.g270900 SUV3 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 8 Mitochondrial DEAD-box DNA/RNA helicase Mitochondrial DEAD-box DNA/RNA helicase putatively involved in 3\'-5\' RNA decay (See PMID: 12466530 and PMID: 10570936). Discussed by Zimmer et al. 2008 [PMID: 18493045]. Previously annotated as SUV3 g6078.t1,Cre06.g270900.t1.1,SUV3 PF00271,PF12513 PTHR12131 KOG0953 - - GO:0003676,GO:0004386,GO:0005524,GO:0016817 AT5G39840.1 - ATP-dependent RNA helicase, mitochondrial, putative Cre08.g368550 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8637.t1 PF01753 PTHR13244 - - - GO:0008270 AT4G31670.1 UBP18 ubiquitin-specific protease 18 Cre12.g552050 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 16 - - g13498.t1 - - - - - - - - - Cre17.g722650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g17482.t1,Cre17.g722650.t1.1 - - - - - - - - - Cre06.g294350 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6814.t1,Cre06.g294350.t1.1 - - KOG3119 - - - AT2G10940.1 - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Cre11.g468850 FAP152 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g11771.t1,Cre11.g468850.t1.1 - - - - - - - - - Cre10.g458150 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g11237.t1 - - - - - - - - - Cre06.g299550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g6928.t1,Cre06.g299550.t1.1 - - - - - - - - - Cre04.g225800 CPLD71 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 9 - - g4935.t1,Cre04.g225800.t1.1 PF00023 - - - - GO:0005515 AT4G27780.1 ACBP2 acyl-CoA binding protein 2 Cre16.g670350 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g16222.t1,Cre16.g670350.t1.1 PF01636 PTHR21064 - - - - - - - Cre16.g660024 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g15943.t1 - - - - - - - - - Cre09.g402738 - 0 1 1.0 nan 0 1 1.0 nan SP n - 17 - - g10026.t1,Cre02.g140650.t1.1 PF00211 PTHR13620 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre17.g707100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 10 - - g17132.t1 - - - - - - AT3G12590.1 - - Cre03.g171800 FAP123 - 0 7 1.0 1.0 0 7 1.0 1.0 C n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g3541.t1,Cre03.g171800.t1.1 - - - - - - - - - Cre12.g534100 CON2,COL - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 3 - - g13136.t1,COL,CON2 PF06203 - - - - GO:0005515 AT5G15840.1 CO,FG B-box type zinc finger protein with CCT domain Cre06.g267050 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g5993.t1,Cre06.g267050.t1.1 PF03370 PTHR12307 - - - GO:0005515 - - - Cre01.g038500 CYP746A1,CYP3 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 Cytochrome P450, CYP197 superfamily, CYP197B family Cytochrome P450, CYP97 superfamily, CYP197B family. CYP746B1 is found in moss Physcomitrella patens. Previously annotated as CYP746A1 g862.t1,Cre01.g038500.t1.1,CYP3 PF00067 PTHR24305 KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT1G31800.1 CYP97A3,LUT5 cytochrome P450, family 97, subfamily A, polypeptide 3 Cre02.g087551 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g1626.t1,Cre02.g087550.t1.3 PF07928,PF10475 PTHR12965 - - - GO:0042147 AT4G19490.1 ATVPS54,VPS54 VPS54 Cre02.g107850 MOB1 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 Cytokinesis-related protein MOB1 proteins are involved in mitotic exit and regulation of cytokinesis. g2211.t1,Cre02.g107850.t1.1,MOB1 PF03637 PTHR22599:SF8,PTHR22599 KOG0440 - K06685 - AT5G45550.1 - Mob1/phocein family protein Cre13.g606000 EFG7 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 5 Elongation factor-like protein Elongation factor, GTP-binding-like hypothetical protein; possibly organellar g14614.t1,Cre13.g606000.t1.1 PF00009,PF00679,PF03144 PTHR23115:SF14,PTHR23115 KOG0462 - - GO:0003924,GO:0005525 AT2G31060.2 - elongation factor family protein Cre02.g112000 AOT7 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 14 Amino acid transporter Belongs to AAAP family of amino acid/auxin permeases; most similar to animal and protist relatives g2305.t1,AOT7 PF01490 PTHR22950 KOG1305 - - - AT1G80510.1 - Transmembrane amino acid transporter family protein Cre12.g542900 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g13711.t1 PF00069 PTHR23257,PTHR23257:SF99 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre17.g744297 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g18002.t1,Cre20.g760350.t1.1,Cre20.g760350.t1.2 PF03629 - - - - - AT3G53010.1 - Domain of unknown function (DUF303) Cre09.g391208 PSRP4 - 0 1 1.0 nan 0 1 1.0 nan M n - - Plastid-specific ribosomal protein 4 Plastid-specific ribosomal protein 4, imported to chloroplast; Chloroplast ribosomal protein Plastid-Specific Ribosomal Protein 4; Chloroplast small ribosomal subunit protein Plastid-Specific Ribosomal Protein 4. This is a different protein from plastid r g9689.t1,Cre02.g126600.t1.1,Cre02.g126600.t1.2,PSRP4 - - - - - - - - - Cre06.g289100 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 15 - - g6710.t1 - - - - - - - - - Cre10.g459200 ACA4,PMA2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 4 P-type ATPase/cation transporter, plasma membrane P-type ATPase/cation transporter, plasma membrane, see GI:16751320; Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2 g11262.t1,Cre10.g459200.t1.1,ACA4,PMA2 PF00702,PF00690,PF00122 PTHR24093:SF61,PTHR24093 KOG0205 3.6.3.6 K01535 GO:0003824,GO:0008152,GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0000166,GO:0046872 AT2G18960.1 AHA1,HA1,OST2,PMA H(+)-ATPase 1 Cre03.g202750 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 8 - - g4265.t1 - - - - - - - - - Cre03.g151950 LZY1B - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 10 Zygote-specific protein Late zygote protein; the mRNA appears at about 90 min post fusion; possibly secreted; cysteine-rich; originally called class V [PMID: 1552907; Genbank S90874] g3092.t1,Cre03.g151950.t1.1,LZY1B - - - - - - - - - Cre12.g541550 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g13743.t1,Cre12.g541550.t1.1 - - - - - - - - - Cre12.g517925 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g12771.t1 - - - - - - - - - Cre07.g334650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g7792.t1 PF00097 - KOG0311 - - - AT4G21070.1 ATBRCA1,BRCA1 breast cancer susceptibility1 Cre02.g099350 SRR8 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g2021.t1,SRR8 PF00530 PTHR19331,PTHR19331:SF418 - - - GO:0005044,GO:0016020 - - - Cre01.g014900 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 16 - - g360.t1 - - - - - - - - - Cre01.g022850 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g528.t1,Cre01.g022850.t1.1 - - - - - - - - - Cre10.g440600 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 - - g10844.t1,Cre10.g440600.t1.1 - - - - - - - - - Cre12.g533450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 15 - - g13123.t1,Cre12.g533450.t1.1 - - - - - - - - - Cre02.g091400 CLPB2 - 0 5 1.0 1.0 0 5 1.0 1.0 M n upregulated 18 ClpB chaperone, Hsp100 family Incomplete; localization unknown; could be inactive, as it lack the Walker B DE sequence in the second AAA domain g1711.t1 PF00004,PF07724 PTHR11638:SF60,PTHR11638 - - - GO:0005524 AT2G25140.1 CLPB-M,CLPB4,HSP98.7 casein lytic proteinase B4 Cre13.g574750 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14127.t2, g14127.t1 - - - - - - - - - Cre10.g443550 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g10906.t1,Cre10.g443550.t1.1 PF00069,PF00481,PF00027 PTHR13832,PTHR13832:SF160 KOG0614 2.7.11.11 K04345 GO:0004672,GO:0005524,GO:0006468,GO:0003824 AT2G20050.2 - protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases Cre15.g639504 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g15453.t1 PF00023 PTHR24128 - - - GO:0005515 AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre02.g085150 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 9 - - g1573.t2, g1573.t1 PF03110 - - - - GO:0003677,GO:0005634 AT2G47070.1, AT5G18830.3 SPL1, ATSPL7,SPL7 squamosa promoter binding protein-like 7, squamosa promoter binding protein-like 1 Cre15.g639500 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g15415.t1,Cre15.g639500.t1.1 - - - - - - - - - Cre15.g639503 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 5 - - g15416.t1 PF07714 PTHR23257:SF341,PTHR23257 - - - GO:0004672,GO:0006468 AT3G22750.1 - Protein kinase superfamily protein Cre10.g442600 XUV5,UAPA2 - 0 1 1.0 nan 0 1 1.0 nan O n - - Xanthine/uracil/vitamin C permease-like Xanthine/uracil/vitamin C permease-like. Previously annotated as UAPA2 g10888.t1,UAPA2, g10888.t2,Cre10.g442600.t1.1,UAPA2 PF00860 PTHR11119,PTHR11119:SF3 KOG1292 - K03458 GO:0005215,GO:0006810,GO:0016020,GO:0055085 AT5G49990.1 - Xanthine/uracil permease family protein Cre06.g278139 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 Small Rab-related GTPase Conserved Hypothetical Protein. Similar to the RabC/Rab18 family of small GTP-ases; One of 3 C-type Rabs. Previously annotated as RABC2 g6284.t1,Cre13.g595450.t1.1 PF00071 PTHR24073,PTHR24073:SF482 KOG0080 - K07910 - AT1G43890.1 ATRAB-C1,ATRAB18,ATRABC1,RAB18,RAB18-1,RABC1 RAB GTPASE HOMOLOG B18 Cre01.g002100 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 - - g48.t1,Cre01.g002100.t1.1 PF01753 - - - - GO:0008270 - - - Cre15.g638450 OPR77,RAP13 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 9 - - g15443.t1,Cre15.g638450.t1.1,RAP13 PF08373 - - - - - - - - Cre03.g176050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g3636.t1,Cre03.g176050.t1.1 - - - - - - AT5G53800.1 - - Cre07.g335300 KAS2 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 3-ketoacyl-ACP-synthase 3-ketoacyl-ACP-synthase component of plastidic multimeric fatty acid synthase g7807.t1,Cre07.g335300.t1.1 PF00109,PF02801 PTHR11712:SF52,PTHR11712 KOG1394 2.3.1.179 K09458 GO:0003824,GO:0009058 AT1G74960.1 ATKAS2,FAB1,KAS2 fatty acid biosynthesis 1 Cre03.g208945 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g4448.t1,Cre19.g755500.t1.1,Cre19.g755500.t1.2 - - - - - - - - - Cre13.g581350 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g14278.t1,Cre13.g581350.t1.1 - - - - - - - - - Cre12.g544750 - 0 11 1.0 1.0 0 11 1.0 1.0 C n - 13 - - g13666.t1 PF00023 PTHR12544,PTHR12544:SF9 KOG4462 - - GO:0005515,GO:0004359,GO:0006541 AT3G03790.2 - ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein Cre06.g311950 ELG3 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 Exostosin-like glycosyltransferase Exostosin-like glycosyltransferases g7215.t1,ELG3 PF03016 PTHR11062,PTHR11062:SF12 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre07.g320100 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g7403.t1 - - - - - - - - - Cre09.g390150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g9492.t1 - - - - - - - - - Cre06.g290250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g6733.t1 - - KOG3263 - - - - - - Cre07.g351600 HEL40 - 0 4 1.0 1.0 0 4 1.0 1.0 M Y - 3 - - g8179.t1,Cre07.g351600.t1.1 PF00271,PF00270 PTHR24031,PTHR24031:SF8 KOG0330 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G12770.1 EMB1586,ISE1 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre01.g023100 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g533.t1 PF00847 - - - - GO:0003700,GO:0006355 AT5G67180.1 TOE3 target of early activation tagged (EAT) 3 Cre07.g325550 KDG3 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - Diacylglycerol kinase - g7519.t1,KDG3 PF00609,PF00781 PTHR11255:SF32,PTHR11255 - - - GO:0004143,GO:0007205 AT5G57690.1 ATDGK4,DGK4 diacylglycerol kinase 4 Cre12.g484600 DMC6 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 2 - - g12028.t1,Cre12.g484600.t1.1,DMC6 PF00145 PTHR10629,PTHR10629:SF8 KOG0919 2.1.1.37 K00558 GO:0003677,GO:0006306 AT5G25480.1 AtDNMT2,DNMT2 DNA methyltransferase-2 Cre15.g642000 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g15481.t1,Cre15.g642000.t1.1 - - - - - - - - - Cre07.g343433 OGD4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g7988.t1,OGD4 PF00198 PTHR23151:SF8,PTHR23151 - - - GO:0008152,GO:0008415 AT4G26910.1 - Dihydrolipoamide succinyltransferase Cre02.g076800 ERG4 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 7 Delta14-sterol reductase, mitochondrial Delta14-sterol reductase, membrane protein involved in ergosterol biosynthesis and related to the ERG4/ERG24 protein family. Has homology to the lamin B receptor g1382.t1,Cre02.g076800.t1.1 PF01222 PTHR21257,PTHR21257:SF26 KOG1435 1.3.1.70 K00222 GO:0016020 AT3G52940.1 ELL1,FK,HYD2 Ergosterol biosynthesis ERG4/ERG24 family Cre06.g269150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g6039.t1 - - - - - - - - - Cre06.g249700 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 13 - - g5593.t1 - PTHR23081 - - - - - - - Cre14.g626300 - 0 1 1.0 nan 0 1 1.0 nan - n - 8 - - g15083.t1,Cre14.g626300.t1.1 - - - - - - - - - Cre17.g730250 PIT - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g17647.t1,PIT PF06201 PTHR12175 KOG1730 - - - AT3G04780.1 - Protein of unknown function (DUF1000) Cre12.g555050 CJE1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g13432.t1,CJE1 - PTHR13451 - 3.1.22.- K08991 - AT4G30870.1 ATMUS81,MUS81 Restriction endonuclease, type II-like superfamily protein Cre12.g523250 MAE15 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g12885.t1,MAE15 PF01554 PTHR11206 KOG1347 - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT4G00350.1 - MATE efflux family protein Cre16.g669750 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g16235.t1,Cre16.g669750.t1.1 - - - - - - - - - Cre15.g636500 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15353.t1,Cre15.g636500.t1.1 - - - - - - - - - Cre08.g366101 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 13 - - g8579.t1,Cre08.g366100.t1.3 PF00023,PF06985 PTHR24123,PTHR24123:SF297 KOG4412 - - GO:0005515 AT5G14230.1 - - Cre09.g406500 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 10 - - g10078.t1, g10078.t2 - - - - - - - - - Cre01.g018100 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g427.t1,Cre01.g018100.t1.1 PF00782 PTHR10159,PTHR10159:SF97 - - - GO:0006470,GO:0008138 AT2G35680.1 - Phosphotyrosine protein phosphatases superfamily protein Cre10.g439450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 14 - - g10821.t1 PF05517 - - - - - - - - Cre16.g663700 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 - - g16024.t1 PF01847,PF02577 PTHR15160 - - - GO:0005634,GO:0016567 - - - Cre07.g330600 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 10 - - g7693.t1 PF01150 PTHR11782 KOG1386 - - GO:0016787 AT2G02970.1 - GDA1/CD39 nucleoside phosphatase family protein Cre07.g353600 MMP7 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 18 Metalloproteinase of VMP family Belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoprotein g8226.t1,MMP7, g8226.t2,Cre07.g353600.t1.1,MMP7 PF05548 - - - - - - - - Cre15.g643354 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15496.t1 - - - - - - - - - Cre04.g214097 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 7 - - g4495.t1 PF01839 - - - - - AT3G09090.1 DEX1 defective in exine formation protein (DEX1) Cre02.g097000 DHP1 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 14 - - g1971.t1,Cre02.g097000.t1.1,DHP1 PF01979 PTHR11647,PTHR11647:SF1 KOG2584 3.5.2.2 K01464 GO:0016787 AT5G12200.1 PYD2 pyrimidine 2 Cre13.g588386 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g14434.t1,Cre13.g588400.t1.3 - - - - - - - - - Cre16.g650900 - 0 17 1.0 1.0 0 17 1.0 1.0 M n - 15 - - g15747.t1 - PTHR25355:SF2,PTHR25355 KOG4176 - K10767 - AT5G48090.1 ELP1 EDM2-like protein1 Cre03.g171050 GHL1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 Glycosyl hydrolase - g3524.t1,GHL1 PF00232 PTHR10353 KOG0626 3.2.1.147 K01237 GO:0004553,GO:0005975 AT2G44470.3 BGLU29 beta glucosidase 29 Cre10.g464133 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g11373.t2,Cre10.g464150.t2.1, g11373.t1,Cre10.g464150.t1.3 - - - - - - AT4G28690.1 - - Cre07.g327950 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - - - - g7628.t1 - - KOG0702 - - - - - - Cre13.g566350 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g13936.t1 PF00069,PF07714 PTHR23257:SF359,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT4G24480.1 - Protein kinase superfamily protein Cre11.g467535 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 Mitochondrial substrate carrier protein Mitochondrial substrate carrier protein. Previously annotated as MITC1 g11465.t1,Cre18.g750950.t1.1,Cre18.g750950.t1.2 PF00153 PTHR24089:SF156,PTHR24089 KOG0758 - - - - - - Cre11.g467534 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g11464.t1 - - - - - - - - - Cre11.g467537 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g11467.t1,Cre18.g750850.t1.1 - - - - - - - - - Cre11.g467536 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g11466.t1,Cre18.g750900.t1.1 PF00069 PTHR24056,PTHR24056:SF120 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT1G51660.1 ATMEK4,ATMKK4,MKK4 mitogen-activated protein kinase kinase 4 Cre11.g467531 FAP15 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g11461.t1,Cre18.g751100.t1.1,Cre18.g751100.t1.2,FAP15 - - - - - - - - - Cre11.g467530 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g11460.t1,Cre18.g751150.t1.1 - - - - - - - - - Cre02.g085600 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 11 - - g1584.t1,Cre02.g085600.t1.1 PF03959 PTHR22778 KOG2551 - - - AT5G65400.1 - alpha/beta-Hydrolases superfamily protein Cre11.g467532 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 13 - - g11462.t2, g11462.t3, g11462.t1 - - - - - - - - - Cre12.g546633 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g13278.t1,Cre12.g561750.t1.2 - - - - - - - - - Cre09.g396661 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g9842.t1,Cre02.g133350.t1.1 - - - - - - AT1G64570.1 DUO3 Homeodomain-like superfamily protein Cre03.g154200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3141.t1 PF09816 - KOG4795 - - - AT5G38050.1 - RNA polymerase II transcription elongation factor Cre16.g656500 ALA3 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - ATPase, phospholipid transporter Potential phospholipid-transporting P-type ATPase, flippase g15868.t2,ALA3, g15868.t1,ALA3 PF00122 PTHR24092:SF18,PTHR24092 KOG0206 3.6.3.1 K01530 GO:0000166,GO:0046872 AT1G59820.1 ALA3 aminophospholipid ATPase 3 Cre13.g584400 FAP189 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 14 Flagellar Associated Protein Conserved uncharacterized coiled-coil Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g14345.t1,Cre13.g584400.t1.1 - - - - - - - - - Cre13.g606250 CYG41 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 Adenylate/guanylate cyclase Protein with C-terminal domain similar to guanylate cyclase isoform A [Drosophila melanogaster] g14619.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre12.g561500 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 13 - - g13287.t1,Cre12.g561500.t1.1 - - - - - - - - - Cre03.g186150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 6 - - g3857.t1 PF07047 PTHR12499 - - - - AT1G28510.1 - Optic atrophy 3 protein (OPA3) Cre08.g361450 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g8463.t1,Cre08.g361450.t1.1 PF07173 - - - - - AT2G22660.2 - Protein of unknown function (duplicated DUF1399) Cre07.g333850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g7776.t1, g7776.t2 PF08325 PTHR10183:SF154,PTHR10183 - - - - AT1G55915.1 - zinc ion binding Cre10.g436600 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g10763.t1,Cre10.g436600.t1.1 PF03193 PTHR11089:SF39,PTHR11089 - 3.6.1.- K06949 GO:0003924,GO:0005525 AT1G67440.1 emb1688 Minichromosome maintenance (MCM2/3/5) family protein Cre16.g692116 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g16881.t1,Cre01.g073000.t1.1 PF07690 PTHR24003,PTHR24003:SF263 KOG1330 - - GO:0016021,GO:0055085 AT5G10190.1 - Major facilitator superfamily protein Cre03.g187200 LC6,DLL2,ODA13 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar outer arm dynein light chain 6, LC6 Flagellar outer arm dynein light chain 6 (11 kDa dynein light chain), LC6. Previously annotated as ODA13 g3878.t1,Cre03.g187200.t1.1,ODA13,LC6 PF01221 PTHR11886,PTHR11886:SF20 KOG3430 - - GO:0005875,GO:0007017 AT4G15930.1 - Dynein light chain type 1 family protein Cre07.g332100 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 16 - - g7727.t1,Cre07.g332100.t1.1 PF00141,PF07731 PTHR11709,PTHR11709:SF31 - - - GO:0004601,GO:0006979,GO:0020037,GO:0055114,GO:0005507,GO:0016491 AT1G23010.1 LPR1 Cupredoxin superfamily protein Cre04.g228450 CPL10 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 Predicted protein Expressed protein of unknown function; possibly conserved in higher plants and cyanobacteria g4998.t1,Cre04.g228450.t1.1 PF10063 - - - - - AT1G28140.1 - - Cre08.g370401 CYCB1 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g8680.t1,Cre08.g370400.t1.2 PF00134 PTHR10177,PTHR10177:SF24 - - - - AT1G76310.1 CYCB2;4 CYCLIN B2;4 Cre01.g042402 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g950.t1 - - - - - - - - - Cre03.g202561 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g4389.t2,Cre19.g752950.t2.1, g4389.t1,Cre19.g752950.t1.1 - - - - - - - - - Cre10.g448150 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 14 - - g11020.t1 - - - - - - - - - Cre16.g678350 CAM19 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 12 - - g16547.t1,Cre16.g678350.t1.1,CAM19 - PTHR10891,PTHR10891:SF40 KOG0027 - - - AT5G23580.1 ATCDPK9,ATCPK12,CDPK9,CPK12 calmodulin-like domain protein kinase 9 Cre01.g021100 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g490.t1,Cre01.g021100.t1.1 - - - - - - - - - Cre09.g407750 CGL130 - 0 1 1.0 nan 0 1 1.0 nan O Y - 11 - - g10108.t1,Cre09.g407750.t1.1 - - - - - - AT4G15790.1 - - Cre09.g402500 ATPVA2,ATPvA2 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 Vacuolar ATP synthase subunit A Vacuolar proton pump subunit 1; Vacuolar H+-ATPase V0 sector, subunit A g9212.t1,Cre09.g402500.t1.1,ATPVA2,ATPvA2 PF01496 PTHR11629,PTHR11629:SF11 KOG2189 3.6.3.14 K02154 GO:0015078,GO:0015991,GO:0033177 AT2G21410.1 VHA-A2 vacuolar proton ATPase A2 Cre02.g074400 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g1322.t1 - - - - - - - - - Cre06.g256100 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g5755.t1 - - - - - - AT4G27680.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre16.g684715 DCL2 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 11 Dicer-like protein Dicer-like protein presumably involved in posttranscriptional gene silencing/RNA interference g16815.t1,Cre01.g070000.t1.1,DCL2 PF00636,PF03368,PF00271 PTHR11207 KOG4462 - - GO:0003723,GO:0004525,GO:0006396,GO:0016891,GO:0003676,GO:0004386,GO:0005524 AT1G01040.2 ASU1,ATDCL1,CAF,DCL1,EMB60,EMB76,SIN1,SUS1 dicer-like 1 Cre06.g260050 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 4 - - g5845.t1,Cre06.g260050.t1.1 - - - - - - - - - Cre02.g078950 MMP17 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 15 - - g1441.t1,MMP17 PF05548 - - - - - - - - Cre06.g280475 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g6524.t1,Cre06.g280475.t1.1 - - - - - - - - - Cre12.g493650 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g12077.t1,Cre12.g493650.t1.1 - - - - - - - - - Cre10.g428720 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g10590.t1,Cre69.g794050.t1.1 PF01753 PTHR13244 - - - GO:0008270 - - - Cre10.g420250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g10400.t1 - - - - - - AT3G05040.1 HST,HST1 ARM repeat superfamily protein Cre01.g024100 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 12 - - g557.t1 - - - - - - - - - Cre16.g679400 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 9 - - g16522.t1 - - KOG3756 - - - - - - Cre03.g182350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3779.t1,Cre03.g182350.t1.1 PF05615 PTHR14854 KOG3215 - - - AT3G02950.1 AtTHO7,THO7 Tho complex subunit 7/Mft1p Cre12.g560750 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 6 - - g13303.t1 PF02536 - - - - - AT5G55580.1 - Mitochondrial transcription termination factor family protein Cre17.g742100 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g17947.t1,Cre17.g742100.t1.1 - - - - - - - - - Cre10.g432600 ARS18 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 17 - - g10674.t1,ARS18 PF00884 PTHR10342:SF2,PTHR10342 KOG3867 - - GO:0008152,GO:0008484 - - - Cre18.g748747 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g18091.t1,Cre46.g788950.t1.1,Cre46.g788950.t1.2 - - - - - - - - - Cre16.g670973 GST3 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Glutathione S-transferase Glutathione S-transferase (GST) (sigma class) with 59-61% identity with GSTS1 and GSTS2; similar to Glutathione-requiring prostaglandin D synthase (Glutathione-dependent PGD synthetase) [gi|6225842]. Possible prostaglandin-D synthase activity. Previousl g16116.t1,Cre01.g062900.t1.1,Cre01.g062900.t1.2,GST3 PF02798,PF00043 PTHR11571:SF16,PTHR11571 KOG1695 - - GO:0005515 - - - Cre06.g249555 - 0 1 1.0 nan 0 1 1.0 nan O Y - - - - g5590.t1,Cre06.g249555.t1.1 - - - - - - - - - Cre09.g390097 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - - - - g9659.t1,Cre78.g795750.t1.1 PF00069,PF07714 PTHR23257:SF296,PTHR23257 KOG0192 2.7.11.1 K04367 GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre09.g414050 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g10255.t1,Cre09.g414050.t1.1 PF06068 PTHR11093 KOG1942 - K04499 GO:0003678,GO:0005524 AT5G22330.1 ATTIP49A,RIN1 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre16.g653338 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g15799.t1 - - - - - - - - - Cre07.g346900 - 0 1 1.0 nan 0 1 1.0 nan SP n - 6 - - g8072.t1 - - - - - - - - - Cre01.g007350 MOT42 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 11 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g191.t1,Cre01.g007350.t1.1,MOT42 - PTHR10825:SF30,PTHR10825 KOG4172 - - - AT5G12310.1 - RING/U-box superfamily protein Cre07.g354150 MFT22 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g8239.t1,Cre07.g354150.t1.1,MFT22 - PTHR24003,PTHR24003:SF142 - - - - - - - Cre09.g401367 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g9989.t1,Cre02.g139050.t1.1,Cre02.g139050.t1.2 - - - - - - AT5G42470.1 - - Cre10.g425750 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g10522.t1 - PTHR11227,PTHR11227:SF18 KOG2111 - - - AT3G62770.1 AtATG18a Transducin/WD40 repeat-like superfamily protein Cre02.g117600 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g2438.t1 - - - - - - - - - Cre18.g748297 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g18082.t1,Cre31.g779650.t1.1 - - - - - - - - - Cre10.g424400 PBB1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 20S proteasome beta subunit B, type beta 2 20S proteasome beta subunit B, type beta 2; (PSMB7) (PSMB10) (PUP1), trypsin-like activity. Previously annotated as PBB1 g10493.t1,Cre10.g424400.t1.1,PBB1 PF00227 PTHR11599:SF1,PTHR11599 KOG0173 3.4.25.1 K02739 GO:0004298,GO:0005839,GO:0051603 AT3G27430.2 PBB1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Cre09.g403293 FCL1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 5-Formyltetrahydrofolate cycloligase Putative 5-Formyltetrahydrofolate cycloligase (5,10-methenytetrahydrofolate synthetase), probably mitochondrial protein, metabolism of tetrahydrofolate-bound one-carbon units. Possibly mitochondrial g10042.t1,Cre02.g120950.t1.1,Cre02.g120950.t1.2,FCL1 PF01812 PTHR23407:SF1,PTHR23407 KOG3093 - - GO:0005524,GO:0009396,GO:0030272 AT5G13050.1 5-FCL 5-formyltetrahydrofolate cycloligase Cre01.g044276 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g990.t1 - - - - - - - - - Cre09.g387949 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 15 - - g9600.t1,Cre02.g122550.t1.1,Cre02.g122550.t1.2 - - - - - - - - - Cre03.g183000 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g3793.t1,Cre03.g183000.t1.1 - - - - - - - - - Cre01.g020918 PREP1 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 5 - - g486.t1,Cre01.g020900.t1.3,PREP1 PF00675,PF08367,PF05193 PTHR11851:SF68,PTHR11851 KOG2019 - K06972 GO:0004222,GO:0006508,GO:0008237,GO:0008270 AT3G19170.1 ATPREP1,ATZNMP,PREP1 presequence protease 1 Cre17.g699200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g16958.t1,Cre17.g699200.t1.1 PF00240 - - - - GO:0005515 AT3G09790.1 UBQ8 ubiquitin 8 Cre02.g107200 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 12 - - g2197.t1 - - - - - - - - - Cre10.g433550 LIG2 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 13 - - g10695.t1,LIG2 PF04679,PF01068,PF04675 PTHR10459:SF7,PTHR10459 KOG0967 6.5.1.1 K10777 GO:0003910,GO:0006281,GO:0006310,GO:0005524,GO:0003677 AT5G57160.1 ATLIG4,LIG4 DNA ligase IV Cre09.g392803 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 - - g9734.t1 - - - - - - - - - Cre03.g188001 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g3894.t1,Cre03.g188000.t1.3 - - - - - - - - - Cre07.g340750 EXN11 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g7924.t1,Cre07.g340750.t1.1,EXN11 PF00929 PTHR12801,PTHR12801:SF39 - - - - AT5G05540.2 SDN2 small RNA degrading nuclease 2 Cre09.g392800 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 - - g9433.t1 - - - - - - - - - Cre07.g337516 SMM27,CGL75 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 17 - - g7852.t1,Cre07.g337550.t1.3,CGL75,SMM27 - PTHR18895:SF7,PTHR18895 - - - - AT5G64150.1 - RNA methyltransferase family protein Cre05.g243050 TRX3,TRXf2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 Chloroplastic thioredoxin f2 Thioredoxin f2, chloroplast precursor [Lemaire et al (2003) Plant Physiol. Biochem. 41, 513-521]. Involved in the activation by light of carbon metabolism enzymes, including calvin cycle enzymes. Probably regulated by glutathionylation [PMID: 16263928]. T g5285.t1,Cre05.g243050.t1.1,TRX3 PF00085 PTHR10438:SF15,PTHR10438 KOG0907 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT3G02730.1 ATF1,TRXF1 thioredoxin F-type 1 Cre16.g678437 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 Cytochrome P450, CYP97 superfamily; carotenoid hydroxylase Cytochrome P450, CYP97 superfamily. CYP97A3 of Arabidopsis is a carotenoid beta-ring hydroxylase [PMID: 16492736]. CYP97C1 of Arabidopsis (LUT1) is a carotenoid epsilon-ring hydroxylase [PMID: 14709673]. Previously annotated as CYP97A6, and listed as CHY g16758.t1,Cre01.g067400.t1.1 PF00067 PTHR24301,PTHR24301:SF127 KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT1G31800.1 CYP97A3,LUT5 cytochrome P450, family 97, subfamily A, polypeptide 3 Cre06.g292216 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g6770.t1 - - - - - - - - - Cre06.g305550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g7073.t1,Cre06.g305550.t1.1 - - - - - - - - - Cre03.g193400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g4001.t1,Cre03.g193400.t1.1 PF04542 - - - - GO:0003677,GO:0003700,GO:0006352,GO:0006355,GO:0016987 AT1G08540.1 ABC1,ATSIG1,ATSIG2,SIG1,SIG2,SIGA,SIGB RNApolymerase sigma subunit 2 Cre11.g477300 PPP36 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g11852.t1,PPP36 PF02985 PTHR10648:SF4,PTHR10648 KOG0211 - K03456 GO:0005515 AT3G25800.1 PDF1,PP2AA2,PR 65 protein phosphatase 2A subunit A2 Cre17.g730750 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g17659.t1 PF07648 - - - - - - - - Cre08.g364862 - 0 26 1.0 1.0 0 26 1.0 1.0 O n - - - - g8544.t1,Cre08.g364862.t1.1 PF01590,PF00069 PTHR23257 KOG0192 - - GO:0005515,GO:0004672,GO:0005524,GO:0006468 AT5G49470.4 - PAS domain-containing protein tyrosine kinase family protein Cre06.g252100 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 - - g5645.t1,Cre06.g252100.t1.1 - PTHR12389 - - - - AT5G58410.1 - HEAT/U-box domain-containing protein Cre09.g396326 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 - - g9833.t1,Cre02.g132950.t1.1 PF02213 - - - - GO:0005515 - - - Cre09.g410750 NII1 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Nitrite reductase Nitrite reductase structural gene (Nii1) [GI:3776043, PMID: 9737004] g10174.t1,Cre09.g410750.t1.1,NII1 PF03460,PF01077 PTHR11493:SF37,PTHR11493 KOG0560 1.7.7.1 K00366 GO:0016491,GO:0055114,GO:0020037,GO:0051536 AT2G15620.1 ATHNIR,NIR,NIR1 nitrite reductase 1 Cre17.g733550 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g17728.t1,Cre17.g733550.t1.1 - - - - - - - - - Cre16.g669000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g16255.t1 - - - - - - - - - Cre09.g387050 FRK1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g9564.t1,Cre09.g387050.t1.1,FRK1 PF00294 PTHR10584,PTHR10584:SF34 KOG2855 - - - AT1G06730.1 - pfkB-like carbohydrate kinase family protein Cre09.g407100 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 6 - - g10092.t1, g10092.t2 PF03719 PTHR13718,PTHR13718:SF2 - - K02988 GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT1G64880.1 - Ribosomal protein S5 family protein Cre10.g418450 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g10360.t1,Cre10.g418450.t1.1 - - - - - - - - - Cre07.g355850 - 0 11 1.0 1.0 0 11 1.0 1.0 C n - 14 - - g8274.t1,Cre07.g355850.t1.1 - - - - - - - - - Cre05.g242900 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 - - g5288.t1,Cre05.g242900.t1.1 - PTHR15341 KOG4835 - - - AT5G25080.1 - Sas10/Utp3/C1D family Cre17.g703950 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - - - g17066.t1,Cre17.g703950.t1.1 - - - - - - - - - Cre11.g469375 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11782.t1 PF01753 PTHR13244 - - - GO:0008270 - - - Cre04.g218750 THB4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Truncated hemoglobin Truncated hemoglobin, plastid-located. Orthologous to C. eugametos LI637 and LI410 [PMID: 8177215, PMID: 10563822]; Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, other eubacteria and unicellular eukaryo g4768.t1,THB4, g4768.t2,Cre04.g218750.t1.1,THB4 PF01152 PTHR10681,PTHR10681:SF47 - - - GO:0015671,GO:0019825 - - - Cre03.g201851 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 4 - - g4286.t1 - - - - - - - - - Cre06.g308100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g7133.t1,Cre06.g308100.t1.1 PF01575 PTHR13078,PTHR13078:SF5 KOG1206 1.1.1.35,4.2.1.107 K12405 GO:0008152,GO:0016491 AT1G76150.1 ATECH2,ECH2 enoyl-CoA hydratase 2 Cre07.g341154 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g7972.t1 - - - - - - - - - Cre12.g549650 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 13 - - g13555.t1,Cre12.g549650.t1.1 - - - - - - - - - Cre12.g510100 APG4 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 Autophagy-related protein Hypothetical Conserved Protein. Similar to the Apg4p/Aut2p cysteine protease involved in autophagy. g12348.t1,APG4 PF03416 PTHR22624,PTHR22624:SF28 KOG2674 3.4.22.- K08342 - AT2G44140.1 - Peptidase family C54 protein Cre16.g672600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g16673.t1,Cre16.g672600.t1.1 PF00400 PTHR10971:SF2,PTHR10971 - - - - - - - Cre16.g672602 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 - - g16674.t1 PF00069 PTHR24349:SF110,PTHR24349 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre16.g672609 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 14 - - g16704.t1,Cre01.g065250.t1.1 - - - - - - - - - Cre06.g271526 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g6093.t1 - - - - - - - - - Cre07.g344500 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 4 - - g8016.t1,Cre07.g344500.t1.1 PF05686 PTHR12203 - - - - - - - Cre08.g369150 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 4 - - g8650.t1 PF03109 PTHR10566,PTHR10566:SF10 KOG1235 - - - AT3G07700.1 - Protein kinase superfamily protein Cre12.g559750 PRL2 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 Predicted extracellular protein Similar to pathogenesis-related protein 1, extracellular g13324.t1,Cre12.g559750.t1.1,PRL2 PF00188 PTHR10334 - - - - AT5G57625.1 - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Cre10.g420400 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 - - g10402.t1 - PTHR18841 - - - GO:0030704 AT3G05040.1 HST,HST1 ARM repeat superfamily protein Cre16.g695700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 12 - - g15554.t1,Cre16.g695700.t1.1 PF04749 - - - - - AT2G45010.1 - PLAC8 family protein Cre05.g236525 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g5440.t1,Cre05.g236544.t1.2 - - - - - - - - - Cre16.g674600 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g16627.t1,Cre16.g674600.t1.1 - - - - - - - - - Cre10.g445650 SMC3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 Structural Maintenance of Chromosomes protein Structural Maintenance of Chromosomes protein 3 homolog, ChromDB CPC3403; Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation g10965.t1,Cre10.g445650.t1.1,SMC3 PF02463,PF06470 PTHR18937,PTHR18937:SF8 KOG0964 - K06669 GO:0005524,GO:0005694,GO:0005515,GO:0051276 AT2G27170.1 SMC3,TTN7 Structural maintenance of chromosomes (SMC) family protein Cre09.g401626 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g9996.t1,Cre02.g139400.t1.1 PF01753 PTHR13244 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre07.g319000 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g7373.t1 - - - - - - - - - Cre07.g319001 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g7375.t1,Cre07.g319001.t1.1 - - - - - - - - - Cre14.g609100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g14685.t1,Cre14.g609100.t1.1 - - - - - - - - - Cre12.g505300 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g12461.t1,Cre12.g505300.t1.1 PF08317 - - - - - - - - Cre01.g003475 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - - - g81.t1 PF06742,PF06863 - - - - - - - - Cre13.g579250 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 15 - - g14230.t1,Cre13.g579250.t1.1 PF01753 PTHR23151:SF8,PTHR23151 - - - GO:0008270 - - - Cre16.g653100 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 - - g15793.t1 - - - - - - - - - Cre01.g007500 NSS1 - 0 19 1.0 1.0 0 19 1.0 1.0 O n - 15 - - g194.t2,NSS1, g194.t1,NSS1 PF00474 PTHR11819,PTHR11819:SF4 KOG2349 - - GO:0005215,GO:0006810,GO:0016020,GO:0055085 - - - Cre03.g196050 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g4061.t1,Cre03.g196050.t1.1 PF07162 PTHR12968 KOG4028 - - - - - - Cre01.g054950 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g1212.t1,Cre01.g054950.t1.1 PF02466 - - - - GO:0005743,GO:0008565,GO:0015031 - - - Cre07.g316200 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g7313.t1 - PTHR24362,PTHR24362:SF96 - - - - - - - Cre03.g184000 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g3813.t1,Cre03.g184000.t1.1 - - - - - - - - - Cre16.g668250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g16273.t1 - - - - - - - - - Cre04.g220768 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 - - g4817.t1,Cre04.g220751.t1.2 - - - - - - - - - Cre03.g204600 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 - - g4222.t1 - - - - - - - - - Cre17.g739900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g17896.t1,Cre17.g739900.t1.1 - PTHR10887 - - - - AT5G35970.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre09.g399200 SDR19 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g9291.t1,Cre09.g399200.t1.1,SDR19 PF00106 PTHR24322 KOG0725 1.-.-.- K00540 GO:0008152,GO:0016491 AT1G54870.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre12.g558800 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g13352.t1 - - - - - - - - - Cre08.g384500 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 4 - - g9048.t1,Cre08.g384500.t1.1 PF08856 - - - - - - - - Cre17.g732100 SSA4 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 6 Predicted protein Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA) g17693.t1,Cre17.g732100.t1.1,SSA4 PF10188 PTHR21439 - - - - - - - Cre04.g228150 FAE1 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated - - - g4992.t1,Cre04.g228150.t1.1,FAE1 PF08392,PF08541 - - - - GO:0006633,GO:0016020,GO:0016747,GO:0008610 AT2G26250.1 FDH,KCS10 3-ketoacyl-CoA synthase 10 Cre17.g723900 FAP131,ROC103 - 0 14 1.0 1.0 0 14 1.0 1.0 O n downregulated 13 Flagellar Associated Protein Protein of unknown function; gene (S926) maps to linkage group XIX [PMID: 1814934; found in the flagellar proteome [PMID: 15998802]. Matsuo et al.\'s (2008) roc103 (rhythm of chloroplast) circadian rhythm mutant locus maps here g17508.t1,Cre17.g723900.t1.1,ROC103 - - - - - - - - - Cre02.g095048 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g1823.t1,Cre11.g470450.t1.1 - - - - - - - - - Cre01.g057426 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g1249.t1 - - - - - - - - - Cre06.g258226 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 8 - - g5804.t1 PF02449 - - - - GO:0004565,GO:0005975,GO:0009341 - - - Cre14.g624450 - 0 12 1.0 1.0 0 12 1.0 1.0 M n - - - - g15044.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre11.g475432 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g11809.t1,Cre11.g475432.t1.1 - - - - - - - - - Cre05.g234801 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - - - g5391.t1 PF00561,PF04083 PTHR11005 KOG2624 3.1.1.3 K14452 GO:0006629 AT5G14180.1 MPL1 Myzus persicae-induced lipase 1 Cre17.g725500 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g17546.t1,Cre17.g725500.t1.1 - - - - - - - - - Cre14.g608275 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g14664.t1 - - - - - - - - - Cre12.g502650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g12518.t1 - PTHR18870,PTHR18870:SF9 - - - - - - - Cre02.g141000 DCL1 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 Dicer-like protein Dicer-like protein presumably involved in posttranscriptional gene silencing/RNA interference. ChromoDB DCL3401 g2670.t1,DCL1 PF00636,PF03368,PF00271,PF00270 PTHR14950,PTHR14950:SF9 - 3.1.26.- K11592 GO:0003723,GO:0004525,GO:0006396,GO:0016891,GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G01040.2 ASU1,ATDCL1,CAF,DCL1,EMB60,EMB76,SIN1,SUS1 dicer-like 1 Cre02.g141004 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g2671.t1 - - - - - - - - - Cre02.g094100 NRX1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 Nucleoredoxin 1 Nucleoredoxin, nuclear thioredoxin-like protein, contains two thioredoxin motifs with a WCPPC active site in each motif; may be a redox regulator of nuclear protein, such as transcriptional factors, under stress conditions [PMID: 9119370]. Low-CO2 inducib g1778.t1,Cre02.g094100.t1.1,NRX1 PF08534,PF00578 PTHR13871,PTHR13871:SF21 KOG2501 - - GO:0016491,GO:0016209 AT1G60420.1 - DC1 domain-containing protein Cre08.g360150 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 7 - - g8434.t1 - - - - - - - - - Cre16.g678600 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g16542.t1,Cre16.g678600.t1.1 - - - - - - AT2G03370.1 - Glycosyltransferase family 61 protein Cre09.g393954 FAP106 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 12 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation g9768.t1,Cre02.g130000.t1.1,Cre02.g130000.t1.2 - PTHR21490 - - - - - - - Cre09.g393953 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9410.t2, g9410.t1 - - - - - - - - - Cre09.g393950 FHL8 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 4 - - g9409.t1,Cre09.g393950.t1.1,FHL8 PF00004 PTHR23076:SF35,PTHR23076 - - - GO:0005524 AT3G02450.1 - cell division protein ftsH, putative Cre06.g290150 CGL65 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 Predicted protein Conserved expressed protein g6731.t1,CGL65 PF02576 - - - - - AT1G69210.1 - Uncharacterised protein family UPF0090 Cre04.g213900 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g4699.t1,Cre04.g213900.t1.1 - - - - - - - - - Cre16.g667750 RPB7A,RPB7 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 DNA-directed RNA polymerase II, 19 kDa polypeptide DNA-directed RNA polymerase II, 19 kDa polypeptide. Previously annotated as RPB7A g16283.t1,Cre16.g667750.t1.1,RPB7,RPB7A PF03876,PF00575 PTHR12709 KOG3298 - K03015 GO:0003899,GO:0006351,GO:0003723 AT5G59180.1 NRPB7 DNA-directed RNA polymerase II Cre12.g509350 FAP238 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g12365.t1,Cre12.g509350.t1.1,FAP238 - - - - - - AT4G37010.1 CEN2 centrin 2 Cre04.g214657 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 6 - - g4500.t1 PF02705 - - - - GO:0015079,GO:0016020,GO:0071805 AT1G60160.1 - Potassium transporter family protein Cre16.g693700 UBC9 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 Ubiquitin-conjugating enzyme E2 E2 Ubiquitin conjugating enzyme g15604.t1,Cre16.g693700.t1.1,UBC9 PF00179 PTHR24068 KOG0417 6.3.2.19 K06689 GO:0016881 AT1G64230.1 UBC28 ubiquitin-conjugating enzyme 28 Cre01.g031800 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g719.t1 PF08409 PTHR23083,PTHR23083:SF85 - - - - - - - Cre17.g740750 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g17917.t1,Cre17.g740750.t1.1 - - - - - - AT5G47490.1 - RGPR-related Cre07.g324150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g7487.t1 PF07173 - - - - - - - - Cre06.g278177 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 16 - - g6320.t1,Cre13.g597150.t1.1 PF04679,PF07522,PF01068,PF04675 PTHR10459 KOG0967 - - GO:0003910,GO:0006281,GO:0006310,GO:0005524,GO:0003677 AT1G66730.1 AtLIG6,LIG6 DNA LIGASE 6 Cre06.g278176 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 16 - - g6319.t1,Cre13.g597100.t1.1,Cre13.g597100.t1.2 PF00400 PTHR22847,PTHR22847:SF118 KOG0645 - - - AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre13.g586850 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g14398.t1 - - - - - - - - - Cre06.g278173 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g6316.t1,Cre13.g596950.t1.1 PF08373 - - - - - - - - Cre04.g215250 FAP26 - 0 16 1.0 1.0 0 16 1.0 1.0 O n - 15 Flagellar Associated Protein Flagellar Associated Protein with ankyrin repeats, found in the flagellar proteome [PMID: 15998802] g4666.t1 - - - - - - - - - Cre06.g278171 - 0 6 1.0 1.0 0 6 1.0 1.0 O Y - 1 - - g6314.t1,Cre13.g596850.t1.1,Cre13.g596850.t1.2 PF04720 - - - - - AT2G39650.1 - Protein of unknown function (DUF506) Cre06.g278170 FAP237,FAS7 - 0 13 1.0 1.0 0 13 1.0 1.0 SP n upregulated 2 Fasciclin-like protein Similar to fasciclin/TGFbeta-induced protein/Volvox CAM (algal-CAM); contains 7 (!) FAS1 (BIgH3) domains, involved in cell recognition; probably extracellular, GPI-anchored (by homology) [PMID: 7925267]; this protein was also found in the flagellar proteo g6313.t1,Cre13.g596800.t1.1,Cre13.g596800.t1.2,FAS7 PF02469 PTHR10900:SF53,PTHR10900 - - - - - - - Cre07.g323550 PUS8 - 0 1 1.0 nan 0 1 1.0 nan C n - 3 tRNA-pseudouridine synthase RNA Pseudouridine synthase, mitochondrial precursor, putative g7474.t1,Cre07.g323550.t1.1,PUS8 PF00849 PTHR21600,PTHR21600:SF6 - - - GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT2G39140.1 SVR1 pseudouridine synthase family protein Cre06.g278179 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g6322.t1,Cre13.g597250.t1.1 - - - - - - - - - Cre17.g738751 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 12 - - g17868.t1,Cre17.g738750.t1.2 - - - - - - - - - Cre09.g389282 FAP114 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 Flagellar Associated Protein, C1a-32 Coiled-coil flagellar associated protein C1a-32; found in the flagellar proteome [PMID: 15998802]. Associated with central apparatus C1 microtubule [PMID: 16188941] g9637.t1,Cre02.g124250.t1.1 - - - - - - - - - Cre10.g456100 AGG3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 Flagellar flavodoxin, involved in phototaxis One of four highly similar, tandemly-repeated flavodoxins. Other proteins in cluster include the flagellar associated proteins FAP191, and AGG4. Found in the flagellar proteome as FAP142 [PMID: 15998802]; Associated with detergent-resistant membranes and g11191.t1,Cre10.g456100.t1.1,AGG3 PF03358 - KOG3135 - - - AT5G54500.1 FQR1 flavodoxin-like quinone reductase 1 Cre02.g081100 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1483.t1,Cre02.g081100.t1.1 PF02893 - - - - - - - - Cre17.g747197 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g18060.t1,Cre20.g758050.t2.1, g18060.t2,Cre20.g758050.t1.1,Cre20.g758050.t1.2 PF04045 - - - - GO:0005856,GO:0030833 AT1G30825.1 ARPC2A,DIS2 Arp2/3 complex, 34 kD subunit p34-Arc Cre16.g672450 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g16676.t2, g16676.t1 - - - - - - - - - Cre07.g331401 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g7710.t1 - - - - - - - - - Cre04.g229948 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 1 - - g5036.t1 PF01207,PF00642 PTHR11082,PTHR11082:SF8 KOG2333 1.-.-.- K05544 GO:0008033,GO:0017150,GO:0050660,GO:0055114,GO:0003676,GO:0008270 AT4G38890.1 - FMN-linked oxidoreductases superfamily protein Cre04.g223300 CCP1 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 Low-CO2-inducible chloroplast envelope protein Low-CO2-inducible 36kDa chloroplast envelope protein (LIP36-1), CO2-responsive gene; related to mitochondrial carriers; Chen et al. 1997 [PMID: 9159951]. CCP1 and LCIE are located in head-to-head orientation; regulated by CCM1 [PMID: 15235119]. Acclimatio g4872.t1,Cre04.g223300.t1.1,CCP1 PF00153 PTHR24089:SF128,PTHR24089 KOG0758 - K03454 - AT5G46800.1 BOU Mitochondrial substrate carrier family protein Cre05.g238000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 - - g5478.t1,Cre05.g238000.t1.1 PF07707 - - - - - - - - Cre05.g233051 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g5113.t2,Cre05.g233000.t2.1, g5113.t1,Cre05.g233000.t1.3 - - - - - - - - - Cre13.g605100 PDE20 - 0 9 1.0 1.0 0 9 1.0 1.0 O n upregulated 17 3\',5\'-cyclic-nucleotide phosphodiesterase Similarity to Dictyostelium PDE encoded by regA gene g14595.t1,Cre13.g605100.t1.1,PDE20 PF01590,PF00233 PTHR11347:SF75,PTHR11347 KOG3689 3.1.4.35 K13761 GO:0005515,GO:0004114,GO:0007165 - - - Cre03.g177700 NIT2 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - - Transcription factor regulating nitrogen metabolism Transcription factor regulating nitrogen metabolism; contains an RWPxRK box (but RWPxRQ); cloning of NIT2 by transposon tagging - PMID: 8394263. mRNA sequence: DQ311647. Note: this allele carries the nit2-137 mutation like all 137c strains g3674.t1 PF02042 - - - - - AT1G20640.1 - Plant regulator RWP-RK family protein Cre13.g571500 CST2 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 11 Chlamy-specific membrane transporter of unknown function Transmembrane protein; shows similarity to various transporters and permeases; highly expressed; small gene family appears specific to Chlamydomonas g14052.t1,Cre13.g571500.t1.1,CST2 - - - - - - - - - Cre08.g380500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8955.t1,Cre08.g380500.t1.1 - - - - - - - - - Cre01.g025200 MMP4 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - Metalloproteinase of VMP family Belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoprotein g579.t1,Cre01.g025200.t1.1,MMP4 PF05548 - - - - - - - - Cre01.g009200 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 12 - - g232.t1,Cre01.g009200.t1.1 - - - - - - AT2G39760.1 ATBPM3,BPM3 BTB/POZ/MATH-domains containing protein Cre02.g103250 MRP5 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 17 ABC transporter, multidrug resistance associated protein Putative ABC transporter, MRP subfamily, membrane protein PMID: 15710683 g2109.t1,MRP5 PF00664,PF00005 PTHR24223,PTHR24223:SF197 KOG0054 - - GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT2G34660.1 ATMRP2,EST4,MRP2 multidrug resistance-associated protein 2 Cre13.g588453 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14436.t1 - - - - - - - - - Cre12.g557928 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g13825.t1,Cre27.g775950.t1.1 PF08592 - - - - - - - - Cre12.g518107 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g12778.t1,Cre12.g518107.t1.1 PF04182 - - - - - AT1G17450.2 - B-block binding subunit of TFIIIC Cre12.g515350 - 0 18 1.0 1.0 0 18 1.0 1.0 SP n - 13 - - g12714.t1, g12714.t3, g12714.t2 PF00415,PF00754,PF08016,PF09458, PF00024,PF00754,PF09458 PTHR22870:SF117,PTHR22870 KOG0487 - - GO:0007155,GO:0005529 AT5G63860.1 UVR8 Regulator of chromosome condensation (RCC1) family protein Cre13.g566626 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g13943.t1 - - - - - - - - - Cre12.g518100 FAL16 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 Similar to Flagellar Associated Protein FAP261 Similar to Flagellar Associated Protein FAP261 that is found in the flagellar proteome [PMID: 15998802]. Overlaps FAP261 gene model in v3 g12777.t1,FAL16 - - - - - - - - - Cre12.g485500 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g12050.t1 PF02897,PF00326 PTHR11757,PTHR11757:SF3 KOG2237 - - GO:0004252,GO:0006508,GO:0008236 AT1G69020.1 - Prolyl oligopeptidase family protein Cre03.g196600 RAD17 - 0 1 1.0 nan 0 1 1.0 nan O Y - 9 DNA damage checkpoint protein Acts as RFC-like clamp loader for RAD9-HUS1-RAD1 complex. Homolog of yeast Rad24 [PMID: 17992532] g4072.t1 PF03215 PTHR12172 - - - GO:0005634,GO:0006281,GO:0007049 AT5G66130.1 ATRAD17,RAD17 RADIATION SENSITIVE 17 Cre04.g214612 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g4681.t1,Cre04.g214612.t1.1 - - - - - - - - - Cre02.g077600 FAP51 - 0 16 1.0 1.0 0 16 1.0 1.0 M n - 14 Flagellar Associated Protein Flagellar Associated Coiled-Coil Protein, found in the flagellar proteome [PMID: 15998802] g1399.t1,Cre02.g077600.t1.1 - - KOG4787 - - - - - - Cre04.g224650 FAP296 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 Flagellar Associated importin alpha-like protein Flagellar Associated Protein similar to importin alpha, found in the flagellar proteome [PMID: 15998802] g4901.t1 PF00514 PTHR23316 - - - GO:0005515 AT4G16143.1 IMPA-2 importin alpha isoform 2 Cre06.g270000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g6058.t1 - - - - - - - - - Cre10.g444900 MAE4,MFT4 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 MATE efflux family protein Putative MATE efflux family protein, Na+-driven multidrug efflux pump. Previously annotated as MFT4 g10938.t1,MAE4,MFT4 PF01554 PTHR11206:SF38,PTHR11206 KOG1347 - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT5G52450.1 - MATE efflux family protein Cre17.g739150 CTPA5,TSP5 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 16 - - g17876.t1,Cre17.g739150.t1.1,TSP5 PF00595,PF03572 PTHR18868:SF10,PTHR18868 - - - GO:0005515,GO:0006508,GO:0008236 AT4G17740.2 - Peptidase S41 family protein Cre05.g239750 ARS13 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 8 - - g5529.t1,Cre05.g239750.t1.1,ARS13 PF00884 PTHR10342:SF2,PTHR10342 KOG3867 - - GO:0008152,GO:0008484 - - - Cre16.g674852 HAP2 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 18 Gamete-specific protein Minus-gamete-specific protein required for fusion with plus gametes. Related to the generative cell specific protein (GCS1) expressed in developing male gametes in higher plants (PMID: 16378100) (partial Chlamy mRNA - Genbank AB206813). The GCS1 gene in h g16725.t1,Cre01.g066100.t1.1,HAP2 PF10699 - - - - - AT4G11720.1 GCS1,HAP2 hapless 2 Cre16.g674850 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g16622.t1 - - - - - - - - - Cre13.g579734 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 7 - - g14243.t1 PF03200 PTHR10412 KOG2161 3.2.1.106 K01228 GO:0004573,GO:0009311 AT1G67490.1 GCS1,KNF glucosidase 1 Cre12.g538050 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - - - g13230.t1,Cre12.g538050.t1.1 - - - - - - - - - Cre12.g514750 CIS1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 Citrate synthase Citrate synthase (EC 2.3.3.1), mitochondrial form; similarity to carrot citrate synthase mitochondrial precursor (GenBank O80433) g12702.t1,Cre12.g514750.t1.1 PF00285 PTHR11739 KOG2617 2.3.3.1 K01647 GO:0044262,GO:0046912 AT2G44350.2 ATCS,CSY4 Citrate synthase family protein Cre01.g024550 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 16 - - g566.t1 PF00069 PTHR23257:SF278,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G08720.1 ATEDR1,EDR1 Protein kinase superfamily protein Cre03.g168950 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g3478.t1,Cre03.g168950.t1.1 - - - - - - - - - Cre01.g008150 RPK1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g208.t1,RPK1 PF00069,PF00481 PTHR13832 - - - GO:0004672,GO:0005524,GO:0006468,GO:0003824 AT3G63340.1 - Protein phosphatase 2C family protein Cre14.g614300 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g14802.t1,Cre14.g614300.t1.1 PF00571,PF00478 PTHR11911,PTHR11911:SF6 KOG2550 1.1.1.205 K00088 GO:0005515,GO:0003824,GO:0055114,GO:0003938 AT1G16350.1 - Aldolase-type TIM barrel family protein Cre09.g388700 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g9526.t1 PF00069 PTHR23257:SF348,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre09.g409350 RLI1 - 0 1 1.0 nan 0 1 1.0 nan O n - - Fe-S ABC transporter Essential Fe-S protein required for ribosome biogenesis and translation initiation. ABC-type ATPase. g10145.t1,Cre09.g409350.t1.1,RLI1 PF04068,PF00037,PF00005 PTHR19248 KOG0063 - K06174 GO:0009055,GO:0051536,GO:0005524,GO:0016887 AT4G19210.1 ATRLI2,RLI2 RNAse l inhibitor protein 2 Cre16.g661588 OPR102 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 1 - - g15975.t1 - - - - - - - - - Cre17.g733162 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 4 - - g17718.t1,Cre17.g733188.t1.2, g17718.t2,Cre17.g733188.t2.1 - - - - - - - - - Cre03.g148050 POLI1 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 13 - - g3011.t1,POLI1 PF00817,PF11799 PTHR11076,PTHR11076:SF10 - 2.7.7.7 K03510 GO:0003684,GO:0003887,GO:0006281 AT5G44740.2 POLH Y-family DNA polymerase H Cre13.g570751 CHI8 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g14038.t1,CHI8 - - - - - - - - - Cre06.g291600 ETK1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 Ethanolamine kinase - g6757.t2,ETK1, g6757.t1,ETK1 PF01633 PTHR22603:SF15,PTHR22603 KOG4720 - - GO:0016773 AT2G26830.1 emb1187 Protein kinase superfamily protein Cre02.g113050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g2328.t1,Cre02.g113050.t1.1 PF03009 PTHR23344 - 3.1.4.43 K01124 GO:0006071,GO:0008889 - - - Cre05.g241633 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 14 - - g5328.t1,Cre24.g770600.t1.1,Cre24.g770600.t1.2 - - - - - - - - - Cre04.g225301 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g4924.t1 - - - - - - - - - Cre05.g241631 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g5326.t1,Cre24.g770700.t1.1,Cre24.g770700.t1.2 PF10812,PF01753 PTHR13244 - - - GO:0008270 - - - Cre05.g241630 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5325.t1 PF00078 - - - - GO:0003723,GO:0003964,GO:0006278 - - - Cre05.g241637 FAP32 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Intraflagellar transport protein 46 Conserved uncharacterized protein; found in the flagellar proteome [PMID: 15998802] and flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation. Previously annotated as FAP32. Interacts with the ODA15 gene product; Ahmed et al. 200 g5332.t1,Cre24.g770400.t1.1,Cre24.g770400.t1.2 PF12317 PTHR13376 - - - - - - - Cre05.g241636 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g5331.t1,Cre24.g770450.t1.1,Cre24.g770450.t1.2 PF00010 PTHR23042,PTHR23042:SF20 - - - GO:0006355,GO:0030528 AT3G23210.1 bHLH34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Cre05.g241635 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 15 - - g5330.t1,Cre24.g770500.t1.1 PF00271,PF00270 PTHR14074:SF4,PTHR14074 - - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G01040.2 ASU1,ATDCL1,CAF,DCL1,EMB60,EMB76,SIN1,SUS1 dicer-like 1 Cre11.g467777 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g11707.t1 - - - - - - - - - Cre11.g467775 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g11705.t1 - - - - - - - - - Cre05.g241638 - 0 6 1.0 1.0 0 6 1.0 1.0 M n upregulated 1 - - g5333.t1,Cre24.g770350.t1.1,Cre24.g770350.t1.2 PF01612 PTHR13620 - - - GO:0003676,GO:0005622,GO:0006139,GO:0008408 AT1G56310.1 - Polynucleotidyl transferase, ribonuclease H-like superfamily protein Cre11.g467773 - 0 5 1.0 1.0 0 5 1.0 1.0 C n upregulated 5 - - g11703.t1,Cre22.g763150.t1.1,Cre22.g763150.t1.2 - PTHR24128,PTHR24128:SF309 KOG4214 - - - AT5G65860.1 - ankyrin repeat family protein Cre11.g467772 CYCD1 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 D-type cyclin D-type cyclin homolog; contains LXCXE motif. Putative function in G1/S g11702.t1,Cre22.g763200.t1.1,CYCD1 PF00134 PTHR10177,PTHR10177:SF76 - - - - AT5G25380.1 CYCA2;1 cyclin a2;1 Cre17.g746647 PUF2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 13 Puf protein RNA-binding protein of the Puf family, translational repressor, may affect mRNA stability g18049.t2,Cre20.g758500.t1.1,PUF2, g18049.t1,Cre20.g758500.t2.1,PUF2 PF00806 PTHR12537:SF12,PTHR12537 KOG1488 - - GO:0003723 AT2G29140.1 APUM3,PUM3 pumilio 3 Cre11.g467770 PGK1 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Phosphoglycerate kinase, chloroplast precursor Phosphoglycerate kinase, chloroplast precursor [EC:2.7.2.3]; catalyses the conversion of 1,3-diphosphoglycerate to 3-phosphoglycerate (the second step of the second phase in glycolysis) forming one molecule of ATP; catalyses also the reverse reaction [PMI g11700.t1,Cre22.g763250.t1.1,Cre22.g763250.t1.2,PGK1 PF00162 PTHR11406 KOG1367 2.7.2.3 K00927 GO:0004618,GO:0006096 AT1G56190.1 - Phosphoglycerate kinase family protein Cre04.g226650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g4960.t1 PF01753 - - - - GO:0008270 - - - Cre15.g640502 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g15386.t1 - - - - - - - - - Cre02.g142326 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g2764.t1 - - - - - - - - - Cre03.g151850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g3090.t1,Cre03.g151850.t1.1 PF06884 - - - - - AT2G31985.1 - Protein of unknown function (DUF1264) Cre07.g335400 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 4 - - g7809.t1 PF00005 PTHR19211:SF37,PTHR19211 KOG0927 - - GO:0005524,GO:0016887 AT5G64840.1 ATGCN5,GCN5 general control non-repressible 5 Cre01.g055966 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 9 - - g1245.t1 - - - - - - - - - Cre17.g744647 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 17 - - g18009.t1,Cre20.g760050.t1.1 - - - - - - - - - Cre15.g641451 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 16 - - g15465.t1,Cre15.g641450.t1.3 - - - - - - - - - Cre01.g050300 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g1111.t1 - - - - - - - - - Cre14.g624201 - 0 1 1.0 nan 0 1 1.0 nan M Y - 8 - - g15041.t1 - PTHR10438:SF70,PTHR10438 KOG0907 - - GO:0006662,GO:0009055,GO:0015035,GO:0045454 AT1G76080.1 ATCDSP32,CDSP32 chloroplastic drought-induced stress protein of 32 kD Cre03.g150101 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3053.t1,NRT2.4 - PTHR24003,PTHR24003:SF250 - - - - AT5G60770.1 ATNRT2.4,NRT2.4 nitrate transporter 2.4 Cre14.g610566 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g14716.t1, g14716.t2 PF02209 - - - - GO:0003779,GO:0007010 - - - Cre08.g377850 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 14 - - g8896.t1,Cre08.g377850.t1.1 - - - - - - - - - Cre02.g118350 MFT14 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g2456.t1,MFT14 - PTHR16172,PTHR16172:SF2 - - - - - - - Cre14.g628752 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g15144.t1 PF01569 PTHR10165,PTHR10165:SF46 KOG3030 - - GO:0003824,GO:0016020 AT3G02600.1 ATLPP3,LPP3 lipid phosphate phosphatase 3 Cre04.g229163 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g5016.t1 PF00169,PF02181 PTHR23213,PTHR23213:SF18 KOG3815 - - GO:0005515 AT5G07740.1 - actin binding Cre10.g443450 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g10904.t1,Cre10.g443450.t1.1 - - - - - - - - - Cre06.g304250 RLS2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 15 RegA/RlsA-like protein Member of a family of proteins [PMID: 16720695, 16622701] related to Volvox carteri RegA, which is a putative transcription repressor [PMID: 9895312] containing a SAND domain (IPR000770 SAND; PF01342) g7043.t1,RLS2 PF01342 - - - - GO:0003677,GO:0005634 - - - Cre10.g434700 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g10720.t1,Cre10.g434700.t1.1 - - - - - - - - - Cre08.g358326 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g8333.t1 - - - - - - - - - Cre12.g501350 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g12549.t1,Cre12.g501350.t1.1 - - - - - - - - - Cre15.g639200 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - - - - g15425.t2, g15425.t1 - - - - - - - - - Cre01.g036550 ERV14 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 Cornichon-like protein Expressed Protein. Similar to Erv14p/cornichon, an ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation g821.t1,Cre01.g036550.t1.1,ERV14 PF03311 PTHR12290:SF8,PTHR12290 KOG2729 - - GO:0016020,GO:0035556 AT1G12340.1 - Cornichon family protein Cre07.g334750 PPP30 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - - - - g7794.t1,PPP30 PF07228 PTHR12320 KOG1379 - - GO:0003824 AT5G66720.1 - Protein phosphatase 2C family protein Cre02.g099251 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g2019.t1 PF02517 - - - - GO:0016020 - - - Cre06.g268450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g6023.t1 PF00400 PTHR22850,PTHR22850:SF14 KOG0264 - K10752 - AT2G19520.1 ACG1,ATMSI4,FVE,MSI4,NFC04,NFC4 Transducin family protein / WD-40 repeat family protein Cre07.g350250 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g8148.t1,Cre07.g350250.t1.1 - - - - - - - - - Cre10.g466450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 2 - - g11432.t1 PF00076 PTHR24012:SF196,PTHR24012 KOG1457 - - GO:0003676 AT3G53460.4 CP29 chloroplast RNA-binding protein 29 Cre16.g691950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g15640.t1 - PTHR24412:SF248,PTHR24412 - - - - - - - Cre03.g157450 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g3216.t1,Cre03.g157450.t1.1, g3216.t2 - - - - - - - - - Cre10.g432950 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g10682.t1 - - - - - - - - - Cre03.g153750 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 14 - - g3132.t1,Cre03.g153750.t1.1 - - - - - - AT1G71480.1 - Nuclear transport factor 2 (NTF2) family protein Cre12.g496400 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 17 - - g12656.t1 - - - - - - - - - Cre12.g515500 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g12718.t1 PF04780 - KOG1003 - - - AT3G47890.1 - Ubiquitin carboxyl-terminal hydrolase-related protein Cre07.g342950 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g7925.t1,Cre07.g342950.t1.1 - - - - - - - - - Cre02.g141746 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g2729.t1,Cre15.g647100.t1.1 PF07647 - - - - GO:0005515 - - - Cre15.g638551 OPR78 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g15441.t1 - - - - - - - - - Cre14.g620233 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g14947.t1 - - - - - - - - - Cre18.g748547 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g18087.t1,Cre46.g789100.t1.1,Cre46.g789100.t1.2 - - - - - - - - - Cre07.g357157 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n downregulated 16 - - g8305.t1,Cre07.g357157.t1.1 PF00067 - KOG0684 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 - - - Cre08.g373688 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 16 - - g8806.t1, g8806.t2 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre01.g049950 VLE1,SPO - 0 18 1.0 1.0 0 18 1.0 1.0 SP n downregulated 15 - - g1105.t1,SPO,VLE1 PF00082 PTHR10795,PTHR10795:SF75 - - - GO:0004252,GO:0006508 - - - Cre07.g340550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g7920.t1 PF04046 - - - - - - - - Cre07.g356283 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8283.t1 - PTHR10666:SF9,PTHR10666 - - - - - - - Cre16.g685949 - 0 1 1.0 nan 0 1 1.0 nan - n - 7 - - g16827.t2, g16827.t3, g16827.t1 - - - - - - - - - Cre09.g404800 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g9161.t1 - - - - - - - - - Cre02.g082877 SERRS1,TSS1 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 4 - - g1522.t1,SERRS1,TSS1 PF07460,PF00587,PF02403 PTHR11778 KOG2509 6.1.1.11 K01875 GO:0004519,GO:0000166,GO:0004828,GO:0005524,GO:0005737,GO:0006412,GO:0006434,GO:0004812,GO:0006418 AT1G11870.2 ATSRS,OVA7,SRS Seryl-tRNA synthetase Cre01.g012650 KCN9 - 0 12 1.0 1.0 0 12 1.0 1.0 SP n - - - - g313.t1,KCN9 PF00023,PF00520 PTHR10217:SF394,PTHR10217 KOG4214 - - GO:0005515,GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT5G37500.1 GORK gated outwardly-rectifying K+ channel Cre02.g073150 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 15 - - g1293.t1,Cre02.g073150.t1.1 - - - - - - - - - Cre10.g447225 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11000.t1 - - - - - - - - - Cre17.g699950 - 0 1 1.0 nan 0 1 1.0 nan M n - 5 - - g16975.t1 - - - - - - - - - Cre06.g266052 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 14 - - g5972.t1 PF00400 PTHR12291,PTHR12291:SF16 - - - - - - - Cre02.g075650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1354.t1,Cre02.g075650.t1.1 PF00076 PTHR14089:SF6,PTHR14089 KOG0153 - K12872 GO:0003676 AT1G07360.1 - CCCH-type zinc fingerfamily protein with RNA-binding domain Cre07.g325748 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 18 - - g7563.t1,Cre26.g773550.t1.1,Cre26.g773550.t1.2 PF05378,PF01968,PF02538 PTHR11365 KOG1939 3.5.2.9 K01469 GO:0016787,GO:0003824 AT5G37830.1 OXP1 oxoprolinase 1 Cre07.g325749 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 - - g7564.t1,Cre26.g773600.t1.1,Cre26.g773600.t1.2 - - - - - - - - - Cre02.g100900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g2059.t1,Cre02.g100900.t1.1 PF01753 - - - - GO:0008270 - - - Cre07.g325740 PTB3 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - Sodium/phosphate symporter Putative phosphate transporter, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters; clusters with PTB3 on scaffold 81. PTB2 and PTB3 are flanked by transposable element sequences, suggesting a possible means of gene duplication. g7555.t1,Cre26.g773300.t1.1,Cre26.g773300.t1.2,PTB3 PF01384 PTHR11101:SF7,PTHR11101 KOG2493 - - GO:0005315,GO:0006817,GO:0016020 AT3G26570.1 ORF02,PHT2;1 phosphate transporter 2;1 Cre07.g325741 PTB2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 Sodium/phosphate symporter Gi|21218058|dbj|AB074881.1 Putative phosphate transporter, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters; clusters with PTB3 on scaffold 81. PTB2 and PTB3 are flanked by transposable element sequences, suggesting a possible means o g7556.t1,Cre26.g773350.t1.1,Cre26.g773350.t1.2,PTB2 PF01384 PTHR11101:SF7,PTHR11101 KOG2493 - - GO:0005315,GO:0006817,GO:0016020 AT3G26570.1 ORF02,PHT2;1 phosphate transporter 2;1 Cre07.g325745 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g7560.t1 - - - - - - - - - Cre06.g288950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 15 - - g6706.t1,Cre06.g288950.t1.1 - - - - - - - - - Cre03.g154900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 1 - - g3158.t1 - PTHR23102:SF13,PTHR23102 - - - - AT1G21580.1 - Zinc finger C-x8-C-x5-C-x3-H type family protein Cre02.g078450 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g1421.t1 - - - - - - - - - Cre11.g469600 HDA9 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 8 - - g11787.t1,Cre11.g469600.t1.1,HDA9 PF00023,PF00850 PTHR10625,PTHR10625:SF22 KOG1342 3.5.1.98 K11407 GO:0005515 AT5G61060.1 ATHDA5,HDA05,HDA5 histone deacetylase 5 Cre01.g055420 - 0 1 1.0 nan 0 1 1.0 nan O n - - Ser/Thr specific protein phosphatase 2A, regulatory subunit B Ser/Thr specific protein phosphatase 2A ,regulatory subunit B (beta isoform); homolog in Drosophila it is involved in the circadian clock. Contains WD domain and G-beta repeat. Previously annotated as PP2A1 and PP2Ab. g1227.t1,Cre23.g768350.t1.1,Cre23.g768350.t1.2 PF00400 PTHR11871 KOG1354 - K04354 GO:0000159,GO:0007165,GO:0008601 AT1G17720.2 ATB BETA Protein phosphatase 2A, regulatory subunit PR55 Cre04.g217937 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g4568.t1 - - - - - - - - - Cre04.g217934 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g4565.t1 PF00156 - - - K07101 GO:0009116 - - - Cre03.g186050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g3855.t1 - - - - - - - - - Cre04.g217931 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g4562.t1,Cre03.g210100.t1.1,Cre03.g210100.t1.2 PF01549,PF03171 PTHR10869 - - - GO:0016491 AT3G06300.1 AT-P4H-2 P4H isoform 2 Cre06.g291450 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g6754.t1,Cre06.g291450.t1.1 - - - - - - - - - Cre04.g218000 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 - - g4752.t1 - - - - - - AT2G26840.1 - - Cre04.g217938 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g4569.t1 PF00612 PTHR23244,PTHR23244:SF38 - - - GO:0005515 AT5G50310.1 - Galactose oxidase/kelch repeat superfamily protein Cre16.g658750 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 7 - - g15914.t1 PF01925 PTHR14255 - - - GO:0016021 AT1G61740.1 - Sulfite exporter TauE/SafE family protein Cre12.g550277 MRS2 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 Mg2+ transporter protein, CorA-like and putative mitochondrial splicing factor Mg2+ transporter protein, CorA-like and putative mitochondrial splicing factor, membrane protein g13807.t1,Cre27.g775050.t1.1,MRS2 PF01544 PTHR13890 KOG2662 - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 AT1G16010.1 MGT2,MRS2-1 magnesium transporter 2 Cre14.g633626 - 0 1 1.0 nan 0 1 1.0 nan SP n - 4 - - g15276.t1 - - - - - - - - - Cre14.g612000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g14749.t1,Cre14.g612000.t1.1 PF00069 PTHR24360:SF96,PTHR24360 KOG0597 - - GO:0004672,GO:0005524,GO:0006468 AT5G18700.1 EMB3013,RUK Protein kinase family protein with ARM repeat domain Cre16.g673821 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g16124.t1,Cre01.g063250.t1.1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G11850.1 - Protein kinase superfamily protein Cre07.g315050 GGH1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 6 Gamma-glutamyl hydrolase Putative gamma-glutamyl hydrolase, folate metabolism, ER targeting sequence predicted by Predotar. g7289.t1,GGH1, g7289.t2,GGH1 PF07722 PTHR11315 KOG1559 - - GO:0003824,GO:0006541,GO:0008242, GO:0006541,GO:0016787,GO:0003824,GO:0008242 AT1G78670.1, AT1G78660.1 ATGGH1,GGH1, ATGGH3,GGH3 gamma-glutamyl hydrolase 3, gamma-glutamyl hydrolase 1 Cre06.g261050 - 0 4 1.0 1.0 0 4 1.0 1.0 C n downregulated - - - g5868.t1,Cre06.g261050.t1.1 - - - - - - - - - Cre06.g256800 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g5771.t2, g5771.t1 - - - - - - AT4G27910.1 ATX4,SDG16 SET domain protein 16 Cre14.g621000 SPL27 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g14965.t1,Cre14.g621000.t1.1,SPL27 PF02184 PTHR11246:SF3,PTHR11246 KOG1915 - K12869 GO:0005622,GO:0006396 AT5G41770.1 - crooked neck protein, putative / cell cycle protein, putative Cre12.g531150 XYI1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 9 - - g13073.t1,XYI1 PF01261,PF00294 PTHR10584,PTHR10584:SF94 KOG2855 - - - AT1G17160.1 - pfkB-like carbohydrate kinase family protein Cre12.g490800 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 7 - - g12169.t1 PF07714 PTHR23257:SF318,PTHR23257 - - - GO:0004672,GO:0006468 AT3G58640.1 - Mitogen activated protein kinase kinase kinase-related Cre07.g348600 SLP1,SULP1 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 5 Chloroplast sulfate permease Transmembrane component of chloroplast sulfate-transporting ABC transporter; ATP-dependent sulfate-transport system of chloroplast envelope [GI:18542422]. Discussed by Lindberg and Melis 2008 [PMID: 18682979]. Previously annotated as SULP1 g8110.t1,SLP1 PF00528 - - - - GO:0005215,GO:0006810,GO:0016020 - - - Cre09.g397900 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 8 - - g9324.t1,Cre09.g397900.t1.1 PF05602 PTHR21347 KOG2489 - - - AT5G08500.1 - Transmembrane CLPTM1 family protein Cre13.g568550 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 17 - - g13991.t1 PF00069 PTHR24356 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT3G08730.1 ATPK1,ATPK6,ATS6K1,PK1,PK6,S6K1 protein-serine kinase 1 Cre09.g395436 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g9809.t1,Cre02.g131900.t1.1,Cre02.g131900.t1.2 PF00076 PTHR24622:SF207,PTHR24622 KOG4205 - K13219 GO:0003676 AT4G34110.1 ATPAB2,PAB2,PABP2 poly(A) binding protein 2 Cre12.g541600 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 - - g13742.t1,Cre12.g541600.t1.1 - - - - - - - - - Cre01.g036700 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g824.t1,Cre01.g036700.t1.1 PF00069 PTHR24351,PTHR24351:SF123 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT1G54960.1 ANP2,MAPKKK2,NP2 NPK1-related protein kinase 2 Cre14.g616650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 3 - - g14856.t1,Cre14.g616650.t1.1 - - - - - - - - - Cre03.g200650 CHI2 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g4313.t1,CHI2 PF00704 PTHR11177:SF6,PTHR11177 KOG2091 - - GO:0004553,GO:0005975 AT4G01040.1 - Glycosyl hydrolase superfamily protein Cre03.g200655 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 14 - - g4372.t1,Cre19.g752200.t2.1, g4372.t2,Cre19.g752200.t1.1 PF00089,PF00933,PF01915 PTHR22939,PTHR22939:SF1 - - - GO:0004252,GO:0006508,GO:0004553,GO:0005975 AT5G40200.1 DegP9 DegP protease 9 Cre16.g678250 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g16549.t1,Cre16.g678250.t1.1 - - - - - - - - - Cre13.g584619 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 16 - - g14350.t1,Cre13.g584619.t1.1 - - - - - - - - - Cre03.g181700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g3766.t1 PF00069 PTHR24356:SF125,PTHR24356 - - - GO:0004672,GO:0005524,GO:0006468 AT2G30360.1 CIPK11,PKS5,SIP4,SNRK3.22 SOS3-interacting protein 4 Cre03.g205025 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - - - - g4411.t1,Cre19.g753950.t1.1,Cre19.g753950.t1.2 - - - - - - - - - Cre12.g548900 ROC23,ROC112 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g13571.t1,ROC112,ROC23 PF00169,PF00397 PTHR22835:SF91,PTHR22835 - - - GO:0005515 AT5G05710.1 - Pleckstrin homology (PH) domain superfamily protein Cre06.g250250 ATPVC,ATPvC - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 5 Vacuolar ATP synthase subunit C Vacuolar ATP synthase subunit C, vacuolar H+ ATPase V1 sector, subunit C g5604.t1,Cre06.g250250.t1.1,ATPVC,ATPvC PF03223 PTHR10137 KOG2909 3.6.3.14 K02148 GO:0015991,GO:0016820,GO:0033180 AT1G12840.1 ATVHA-C,DET3 vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) Cre06.g273413 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 1 - - g6134.t1 PF01189 PTHR22807 KOG1122 - - - AT4G26600.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre02.g091193 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g1705.t1,Cre02.g091193.t1.1 - - - - - - AT3G17668.1 ENA DnaJ/Hsp40 cysteine-rich domain superfamily protein Cre12.g499000 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g12605.t1,Cre12.g499000.t1.1 - - - - - - - - - Cre06.g304000 SRH14 - 0 18 1.0 1.0 0 18 1.0 1.0 M n - 17 - - g7039.t1,Cre06.g304000.t1.1,SRH14 PF00176 PTHR10799:SF152,PTHR10799 KOG4709 - - GO:0003677,GO:0005524 AT2G40770.1 - zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding Cre07.g345031 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g8029.t1,Cre07.g345031.t1.1 PF01936 - - - - - - - - Cre10.g450879 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g11080.t1,Cre10.g450879.t1.1 PF04427 PTHR12661 KOG2963 - - - AT5G61770.2 PPAN PETER PAN-like protein Cre03.g195100 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 15 - - g4040.t1 - - - - - - - - - Cre12.g537700 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 13 - - g13223.t1,Cre12.g537700.t1.1 - - - - - - AT3G08780.1 - - Cre16.g684900 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 3 - - g16400.t1 - - - - - - - - - Cre11.g467619 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g11549.t1 - - - - - - - - - Cre14.g608788 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g14675.t1,Cre14.g608788.t1.1 PF00892 - - - - GO:0016020 - - - Cre12.g493750 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g12075.t1,Cre12.g493750.t1.1 - - - - - - - - - Cre09.g388060 VDR1 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 9 Violaxanthin de-epoxidase-related protein Related to violaxanthin de-epoxidase (may be the locus for NPQ1); orthologous to At2g21860; probably chloroplast-targeted; may play a role in Energization-dependent Non-Photochemical Quenching (NPQ) [PMID: 16143839] g9603.t1,Cre02.g122650.t1.1,Cre02.g122650.t1.2,VDR1 - - - - - - AT2G21860.1 - violaxanthin de-epoxidase-related Cre09.g400738 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g9971.t1,Cre02.g138150.t1.1 PF00097 PTHR23012,PTHR23012:SF25 - - - - AT2G02960.1 - RING/FYVE/PHD zinc finger superfamily protein Cre06.g269300 CGL120 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y upregulated 17 - - g6042.t1,Cre06.g269300.t1.1 PF07103 - - - - - AT1G30130.1 - - Cre03.g146047 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g2967.t1,Cre01.g060600.t1.1 - PTHR24782:SF30,PTHR24782 - - - - - - - Cre03.g205700 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g4198.t1, g4198.t2 - PTHR12948:SF1,PTHR12948 - - - - - - - Cre17.g706900 CNG3 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 Cyclic-nucleotide gated potassium channel - g17128.t1,Cre17.g706900.t1.1,CNG3 PF00520,PF00027 PTHR10217:SF393,PTHR10217 KOG0498 2.7.11.1 K08282 GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT3G02850.1 SKOR STELAR K+ outward rectifier Cre06.g286300 UMM5,COQ5B - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - Ubiquinone/menaquinone biosynthesis methyltransferase Ubiquinone/menaquinone biosynthesis methyltransferase. Previously annotated as COQ5B g6653.t1,Cre06.g286300.t1.1,COQ5B,UMM5 PF08241 PTHR10108,PTHR10108:SF238 - - - GO:0008152,GO:0008168 - - - Cre17.g748047 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g18077.t1 PF00078 PTHR19446:SF123,PTHR19446 - - - GO:0003723,GO:0003964,GO:0006278 - - - Cre13.g582755 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g14307.t2, g14307.t1 - - - - - - - - - Cre16.g657250 GOX17 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 14 Glyoxal or galactose oxidase The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate g15883.t1,Cre16.g657250.t1.1,GOX17 PF09118,PF07250 - - - - - AT1G67290.1 - glyoxal oxidase-related protein Cre06.g287650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 17 - - g6681.t1,Cre06.g287650.t1.1 PF00023 PTHR24128,PTHR24128:SF158 KOG4412 - - GO:0005515 AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre02.g075500 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g1351.t1 - - - - - - - - - Cre03.g190700 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3947.t1,Cre03.g190700.t1.1 - - - - - - - - - Cre03.g208300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g4141.t1,Cre03.g208300.t1.1 - - - - - - - - - Cre13.g604350 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 18 - - g14580.t1, g14580.t2 PF00069 PTHR23257:SF309,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre17.g724125 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g17513.t1 - - - - - - - - - Cre07.g339200 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 11 - - g7890.t1, g7890.t2,Cre07.g339200.t1.1 - - - - - - AT3G19220.1 CYO1,SCO2 protein disulfide isomerases Cre08.g363150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g8504.t1,Cre08.g363150.t1.1 PF01607 PTHR23301 - - - GO:0005576,GO:0006030,GO:0008061 - - - Cre16.g682026 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g16791.t1,Cre01.g068950.t1.1 - - - - - - - - - Cre16.g686500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g16364.t1 PF03767 - - - - GO:0003993 AT2G38600.1 - HAD superfamily, subfamily IIIB acid phosphatase Cre16.g686501 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g16365.t1 - PTHR22731 - - - - AT4G34310.1 - alpha/beta-Hydrolases superfamily protein Cre16.g671250 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - - - g16294.t1,Cre16.g671250.t1.1 PF00999 PTHR10110 KOG1965 - K12041 GO:0006812,GO:0015299,GO:0016021,GO:0055085 AT1G79610.1 ATNHX6,NHX6 Na+/H+ antiporter 6 Cre10.g422300 PRX6 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 4 Thioredoxin dependent peroxidase Peroxiredoxin Q, chloroplastic thioredoxin dependent peroxidase, chloroplast precursor. Attached to thylakoids in Arabidopsis [PMID: 16507087; PMID: 15531707; PMID: 14976238; PMID: 12529539; PMID: 15890615] g10447.t1,Cre10.g422300.t1.1 PF00578 PTHR10681:SF5,PTHR10681 KOG0855 1.11.1.15 K03564 GO:0016209,GO:0016491 AT3G26060.2 ATPRX Q Thioredoxin superfamily protein Cre15.g635900 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g15339.t1 - - - - - - - - - Cre16.g674100 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 15 - - g16640.t2, g16640.t1 - - - - - - - - - Cre12.g506350 HFO18 - 0 1 1.0 nan 0 1 1.0 nan O n - - Histone H4 Replication linked H4 cluster XVIII (type 43AB) g12442.t1,Cre12.g506350.t1.1,HFO18 PF00125 PTHR10484 KOG3467 - K11254 GO:0000786,GO:0003677,GO:0005634,GO:0006334 AT5G59970.1 - Histone superfamily protein Cre14.g615600 SDR35 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 7 - - g14830.t1,Cre14.g615600.t1.1,SDR35 PF05057 - - - - - AT4G25770.2 - alpha/beta-Hydrolases superfamily protein Cre06.g279750 MAP1A - 0 1 1.0 nan 0 1 1.0 nan O n - - Methionine aminopeptidase MetAP1, Peptidase M [PMID: 11060042] g6504.t1,Cre06.g279750.t1.1 PF00557,PF01753 PTHR10804,PTHR10804:SF13 KOG2738 3.4.11.18 K01265 GO:0009987,GO:0008270 AT2G45240.1 MAP1A methionine aminopeptidase 1A Cre02.g085800 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 5 - - g1588.t1 - - - - - - - - - Cre13.g563850 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g13873.t1 PF11977 - - - - - AT4G21900.1 PRORP3 proteinaceous RNase P 3 Cre03.g174525 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g3603.t1,Cre03.g174543.t1.2 - - - - - - - - - Cre09.g399626 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 15 - - g9924.t1,Cre02.g136900.t1.1 PF04339 - - - K09919 - AT2G23390.1 - - Cre17.g731950 ATP9B - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 Mitochondrial F1F0 ATP synthase subunit 9, isoform B Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid. Note: ATP9A encodes a related protein also predicted to encode subunit C of an organellar F1F0-ATP synthase. ATP9A and ATP9B are adjacent on genome, and divergently transcribed g17690.t1,Cre17.g731950.t1.1,ATP9B PF00137 PTHR10031 KOG3025 - - GO:0015078,GO:0015991,GO:0033177 AT2G07671.1 - ATP synthase subunit C family protein Cre13.g576000 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g14156.t1 - - - - - - - - - Cre02.g105500 AOD1 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 11 Acetylornithine deacetylase Putative acetylornithine deacetylase (EC 3.5.1.16); arginine biosynthesis pathway; Target-P predicts no organelle targeting g2163.t1,Cre02.g105500.t1.1,AOD1 PF07687,PF01546 PTHR11014:SF7,PTHR11014 KOG2276 3.5.1.16 K01438 GO:0016787,GO:0008152 AT4G17830.1 - Peptidase M20/M25/M40 family protein Cre09.g396512 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated - - - g9838.t1,Cre02.g133150.t1.1,Cre02.g133150.t1.2 - - - - - - - - - Cre01.g001200 MAPKKK14 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 18 - - g27.t1,MAPKKK14 PF07714 PTHR23257:SF366,PTHR23257 - - - GO:0004672,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre03.g164250 FAP262 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 15 Flagellar Associated Protein, protein kinase Flagellar Associated Protein, similar to protein kinases, found in the flagellar proteome [PMID: 15998802] g3367.t1 PF00612,PF00069 PTHR24055:SF175,PTHR24055 KOG0593 - - GO:0005515,GO:0004672,GO:0005524,GO:0006468 AT1G67580.1 - Protein kinase superfamily protein Cre08.g358541 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g8357.t1,Cre41.g787050.t1.1 - - - - - - - - - Cre05.g238280 FAP205 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g5487.t1,Cre56.g791300.t1.1,Cre56.g791300.t1.2 - - - - - - - - - Cre01.g025950 PPR8 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - Pentatrichopeptide repeat protein - g596.t1,Cre01.g025950.t1.1 PF01535 PTHR24015,PTHR24015:SF207 - - - - AT4G31850.1 PGR3 proton gradient regulation 3 Cre02.g142950 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2627.t1,Cre02.g142950.t1.1 - - - - - - - - - Cre12.g495800 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g12137.t1 - - KOG0978 - - - AT2G46180.1 GC4 golgin candidate 4 Cre02.g147350 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g2513.t1,Cre02.g147350.t1.1 - - - - - - - - - Cre16.g654250 - 0 9 1.0 1.0 0 9 1.0 1.0 O n downregulated 13 - - g15817.t2, g15817.t3,Cre16.g654250.t1.1, g15817.t1 - - - - - - - - - Cre07.g338150 RNP1,AML1 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 RNA-binding protein with RRM (RNP-1) motif Similar to plant AML and TEL genes and to yeast mei2 (PMID: 15356386); contains a RRM (RNP-1) motif g7867.t1,AML1,RNP1 PF04059,PF00076 PTHR24011,PTHR24011:SF200 KOG4660 - - GO:0003676 AT1G29400.1 AML5,ML5 MEI2-like protein 5 Cre03.g191300 LCI34,LCI35 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 17 Low-CO2-inducible protein Low-CO2 inducible gene revealed by cDNA array analyses; TargetP prediction: Mitochondria (confidence: 4); regulated by CCM1. PMID:15235119. g3959.t1,Cre03.g191300.t1.1,LCI34 - - - - - - - - - Cre07.g321900 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g7439.t1,Cre07.g321900.t1.1 - - - - - - - - - Cre03.g191900 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g3972.t1,Cre03.g191900.t1.1 PF00443 PTHR24006,PTHR24006:SF48 KOG1872 3.1.2.15 K11840 GO:0004221,GO:0006511 AT3G11910.1 UBP13 ubiquitin-specific protease 13 Cre10.g421650 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 13 - - g10434.t1,Cre10.g421650.t1.1 PF03083 PTHR10791,PTHR10791:SF18 KOG1623 - - GO:0016021 AT1G21460.1 - Nodulin MtN3 family protein Cre03.g145927 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g2961.t1 PF01753 PTHR13244 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre06.g274050 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 15 - - g6147.t1 PF00855 - - - - - - - - Cre12.g489600 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 - - g12193.t1 PF00575 - - - - GO:0003723 - - - Cre08.g368900 TSA2 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g8645.t2,Cre08.g368900.t1.1,TSA2, g8645.t1,TSA2 PF02272,PF07973,PF01411 PTHR11777 KOG0188 6.1.1.7 K01872 GO:0003676,GO:0005524,GO:0005737,GO:0006412,GO:0016876,GO:0043039,GO:0000166,GO:0004813,GO:0006419 AT5G22800.1 EMB1030,EMB263,EMB86 Alanyl-tRNA synthetase, class IIc Cre12.g507400 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g12414.t1,Cre12.g507400.t1.1 PF00501 PTHR24096 KOG1256 6.2.1.3 K01897 GO:0003824,GO:0008152 AT5G27600.1 ATLACS7,LACS7 long-chain acyl-CoA synthetase 7 Cre04.g212100 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 16 - - g4737.t1 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 AT2G04740.1 - ankyrin repeat family protein Cre05.g237950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated - - - g5477.t1 - - - - - - - - - Cre17.g732600 GOX5 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 Glyoxal or galactose oxidase - g17704.t1,Cre17.g732600.t1.1,GOX5 PF07250,PF09118 - - - - - AT1G67290.1 - glyoxal oxidase-related protein Cre09.g413100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g10228.t1 PF03407 - - - - - - - - Cre17.g723200 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - - - g17494.t1,Cre17.g723200.t1.1 - - - - - - - - - Cre01.g017701 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g418.t1,Cre01.g017700.t1.3 PF03372,PF00078 PTHR13078,PTHR13078:SF14 KOG1995 - - GO:0003723,GO:0003964,GO:0006278 - - - Cre13.g578400 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 8 - - g14210.t1,Cre13.g578400.t1.1 - - - - - - - - - Cre07.g323700 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g7477.t1 - - - - - - - - - Cre09.g416550 FAP193,MBO2 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 Coiled-coil flagellar protein, Move Backward Only 2 Novel coiled-coil flagellar protein corresponding to the genetically defined MBO2 locus. mbo2 (move backward only) mutants are defective in the production of the ciliary waveform. g10309.t1,Cre09.g416550.t1.1,FAP193 - - - - - - - - - Cre13.g570650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g14036.t1 - - - - - - - - - Cre12.g541500 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 16 - - g13744.t1 - - - - - - - - - Cre16.g681700 NUOS4B,NUOS4b - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - NADH:ubiquinone oxidoreductase subunit Related to NUOS4 encoding NADH:ubiquinone oxidoreductase (Complex I) 18 kD-like subunit (45% id.) [PMID: 15710684] g16470.t2,NUOS4b, g16470.t1,NUOS4b, g16470.t3,NUOS4b PF04800 PTHR12219,PTHR12219:SF12 - - - GO:0005743,GO:0016651,GO:0022900 AT5G67590.1 FRO1 NADH-ubiquinone oxidoreductase-related Cre08.g366350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g8584.t1 - - KOG4462 - - - - - - Cre02.g095750 ZXE1,ZEP1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 5 - - g1944.t1,Cre02.g095750.t1.1,ZXE1 PF01494 PTHR13789 - - - GO:0004497,GO:0055114 AT5G67030.1 ABA1,ATABA1,ATZEP,IBS3,LOS6,NPQ2,ZEP zeaxanthin epoxidase (ZEP) (ABA1) Cre09.g394917 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g9795.t1,Cre02.g131300.t1.1,Cre02.g131300.t1.2 PF02582 PTHR16255 KOG2861 - - - AT1G69380.1 - Protein of unknown function (DUF155) Cre11.g467572 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g11501.t2,Cre18.g749800.t2.1, g11501.t1,Cre18.g749800.t1.1,Cre18.g749800.t1.2 - - - - - - - - - Cre11.g467575 - 0 1 1.0 nan 0 1 1.0 nan SP n - 2 - - g11504.t1, g11504.t2 PF00004,PF07724,PF10431 PTHR11638, PTHR11638:SF18,PTHR11638 KOG1051 - - GO:0005524 AT5G15450.1 APG6,CLPB-P,CLPB3 casein lytic proteinase B3 Cre11.g467574 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g11503.t3,Cre18.g749700.t1.1,Cre18.g749700.t1.2, g11503.t1,Cre18.g749700.t2.1, g11503.t2,Cre18.g749700.t3.1 - PTHR12170:SF3,PTHR12170, PTHR12170 KOG2817 - - - AT2G22690.1, AT4G37880.1 - LisH/CRA/RING-U-box domains-containing protein, zinc ion binding Cre11.g467577 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g11506.t1,Cre18.g749550.t1.1,Cre18.g749550.t1.2 PF00319 PTHR11945:SF52,PTHR11945 - - K09262 GO:0003700,GO:0005634,GO:0006355,GO:0043565 AT3G30260.1 AGL79 AGAMOUS-like 79 Cre11.g467576 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g11505.t3,Cre18.g749600.t1.1, g11505.t2,Cre18.g749600.t3.1, g11505.t1,Cre18.g749600.t2.1 PF02037 - - - - GO:0003676 AT1G69230.1 SP1L2 SPIRAL1-like2 Cre09.g404250 CEP9 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 18 - - g9174.t1,CEP9 PF07645,PF00112,PF01476 PTHR12411:SF147,PTHR12411 KOG1543 - - GO:0006508,GO:0008234,GO:0016998 AT3G48350.1 - Cysteine proteinases superfamily protein Cre02.g094801 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 10 - - g1793.t1,Cre02.g094800.t1.3 - - - - - - - - - Cre11.g468400 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 10 - - g11762.t1 PF07466 - - - - - AT1G54520.1 - - Cre16.g692150 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g15635.t1, g15635.t2 PF05686 PTHR12203,PTHR12203:SF16 - - - - - - - Cre12.g488550 FKM8 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 13 - - g12214.t1,Cre12.g488550.t1.1,FKM8 - - - - - - AT2G26680.1 - - Cre17.g745647 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 9 - - g18029.t1,Cre20.g759300.t1.1 PF09350 PTHR24016:SF24,PTHR24016 - - - - - - - Cre01.g028650 - 0 14 1.0 1.0 0 14 1.0 1.0 SP n - 18 - - g654.t1,Cre01.g028650.t1.1 - - - - - - - - - Cre04.g224850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g4908.t1 - - - - - - - - - Cre03.g158100 SMM9 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g3236.t1,Cre03.g158100.t1.1,SMM9 PF01170 PTHR13610 KOG4058 - - - - - - Cre12.g552350 - 0 1 1.0 nan 0 1 1.0 nan SP n - 9 - - g13491.t1 - - - - - - - - - Cre16.g679445 FAS6 - 0 1 1.0 nan 0 1 1.0 nan SP n - - Fasciclin-like protein Similar to putative cyanobacterial secreted and surface proteins [PMID: 7925267]; contains 1 FAS1 (BIgH3) domains, involved in cell recognition; probably extracellular (by homology) g16768.t1,Cre01.g067800.t1.1,Cre01.g067800.t1.2,FAS6 PF02469 PTHR10900:SF53,PTHR10900 - - - - - - - Cre17.g722150 PKS3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 8 Type III polyketide synthase Similar to chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemica g17470.t1,Cre17.g722150.t1.1,PKS3 PF02797,PF08392 - - - - GO:0008415,GO:0006633,GO:0016020,GO:0016747 AT1G19440.1 KCS4 3-ketoacyl-CoA synthase 4 Cre11.g479250 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g11898.t1,Cre11.g479250.t1.1 - PTHR24106 KOG1909 - - - AT3G63130.1 ATRANGAP1,RANGAP1 RAN GTPase activating protein 1 Cre10.g450600 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g11073.t1 PF00168 PTHR10024 - - - GO:0005515 AT5G06850.1 - C2 calcium/lipid-binding plant phosphoribosyltransferase family protein Cre02.g083400 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 16 - - g1535.t1 PF07000 PTHR13379 KOG4529 - - - AT1G73380.1 - - Cre12.g503400 PRP38 - 0 1 1.0 nan 0 1 1.0 nan O n - - Pre-mRNA splicing factor, SR-related protein Pre-mRNA splicing factor, SR-related protein. Similar to pre-mRNA splicing factor PRP38 family protein. Contains SR repeats in C-terminal half g12502.t1,Cre12.g503400.t1.1,PRP38 PF03371 PTHR23142 KOG2889 - K12849 - AT2G40650.1 - PRP38 family protein Cre10.g444317 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g10926.t1,Cre10.g444317.t1.1 - - - - - - - - - Cre03.g163376 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g3349.t1,Cre03.g163376.t1.1 - - - - - - - - - Cre09.g403700 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9187.t1 - - - - - - - - - Cre01.g016150 - 0 7 1.0 1.0 0 7 1.0 1.0 O n upregulated 4 - - g384.t1,Cre01.g016150.t1.1 PF03747 - - - - - - - - Cre12.g501800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g12537.t1,Cre12.g501800.t1.1 PF03669 PTHR13193 KOG3462 - - - AT5G07960.1 - - Cre07.g323500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated - - - g7473.t1 PF08609 PTHR19316:SF6,PTHR19316 - - K14001 - AT3G51980.1 - ARM repeat superfamily protein Cre06.g311500 - 0 1 1.0 nan 0 1 1.0 nan SP n - 17 - - g7206.t1 - - - - - - - - - Cre09.g400050 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g9268.t1 - - - - - - - - - Cre17.g719522 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g17411.t1,Cre17.g719522.t1.1 PF03959,PF00581 PTHR18838:SF15,PTHR18838 - - - - AT1G09280.1 - - Cre06.g279100 DPY30 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 Subunit of chromatin modifying protein Chromatin modifying protein complex member, identified by mutations in C. elegans defective in male sensory behavior. Identified in the flagellar and basal body proteome as FBB12 [PMID: 15137946]. Transcript upregulated during flagellar regeneration [PMID g6489.t1,Cre06.g279100.t1.1,DPY30 PF05186 PTHR23356 - - - - - - - Cre09.g399439 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 - - g9919.t1,Cre02.g136650.t1.1 - PTHR12183 KOG4172 - - - AT5G19080.1 - RING/U-box superfamily protein Cre04.g214800 VMP6,VMPL1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Endosomal R-SNARE protein, VAMP-like family (R.III) Endosomal R-SNARE protein, VAMP-like family (R.III). Expressed Protein. Contains R-SNARE motif distantly similar to VAMP4, not found in land plants. Part of 2 member gene family on same scaffold. Class R.III SNARE, involved in endosomal trafficking (PMI g4675.t1,Cre04.g214800.t1.1,VMP6,VMPL1 PF00957 PTHR21136:SF87,PTHR21136 KOG0860 - - GO:0016021,GO:0016192 AT5G11150.1 ATVAMP713,VAMP713 vesicle-associated membrane protein 713 Cre06.g295950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g6846.t1 - - - - - - - - - Cre03.g199450 MINE2 - 0 4 1.0 1.0 0 4 1.0 1.0 C n downregulated 11 Chloroplast division site determinant Putative MinE homolog, chloroplast division site-determinant g4339.t1,Cre03.g199450.t1.1 - - - - - - - - - Cre04.g221400 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g4832.t1,Cre04.g221400.t1.1 - - - - - - - - - Cre11.g478128 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 2 - - g11870.t1 PF00005 PTHR19211:SF18,PTHR19211 KOG0066 - K06158 GO:0005524,GO:0016887 AT1G64550.1 ATGCN3,GCN3 general control non-repressible 3 Cre03.g207825 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 Eukaryotic translation initiation factor 2B subunit 2, eIF-2B gamma subunit Eukaryotic translation initiation factor 2B subunit 2, eIF-2B gamma subunit. eIF-2B is a complex of five subunits that functions as a guanine nucleotide exchange factor for the eukaryotic initiation factor 2 eIF2; it converts the inactive eIF2-GDP to the g4437.t2,Cre19.g755100.t1.1,Cre19.g755100.t1.2, g4437.t3,Cre19.g755100.t3.1, g4437.t1,Cre19.g755100.t2.1 PF00483 PTHR22572 KOG1462 - K03241 GO:0009058,GO:0016779 AT5G19485.1 - transferases;nucleotidyltransferases Cre16.g649050 CYG38 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 Adenylate/guanylate cyclase Similar to guanylate cyclase soluble, beta-2 chain(GCS-beta-2) [Bos taurus] g15706.t1, g15706.t2 PF07701,PF00211,PF07700 PTHR11920:SF134,PTHR11920 KOG4171 4.6.1.2 K12319 GO:0004383,GO:0006182,GO:0009190,GO:0016849,GO:0035556,GO:0020037 - - - Cre07.g314351 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 7 - - g7273.t1 PF00782 PTHR10159:SF129,PTHR10159 KOG2914 3.1.3.16,3.1.3.48 K14165 GO:0006470,GO:0008138 AT4G18593.1 - dual specificity protein phosphatase-related Cre05.g234638 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 1 - - g5357.t1 PF00156,PF00310 PTHR11907 KOG0572 2.4.2.14 K00764 GO:0009116,GO:0004044,GO:0009113,GO:0008152 AT2G16570.1 ASE1,ATASE,ATASE1 GLN phosphoribosyl pyrophosphate amidotransferase 1 Cre05.g234637 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g5356.t1 PF00410 PTHR11758 KOG1754 - K02957 GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT5G59850.1 - Ribosomal protein S8 family protein Cre10.g431000 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g10642.t1 - - - - - - - - - Cre09.g397586 - 0 10 1.0 1.0 0 10 1.0 1.0 O n downregulated 18 - - g9868.t1,Cre02.g134550.t1.1 - - - - - - - - - Cre10.g457950 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 5 - - g11233.t1 - - - - - - - - - Cre03.g167500 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g3438.t1,Cre03.g167500.t1.1 - PTHR22904,PTHR22904:SF108 - - - - AT4G22670.1 AtHip1,HIP1 HSP70-interacting protein 1 Cre16.g683035 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g16800.t1,Cre01.g069250.t1.1,Cre01.g069250.t1.2 PF00437 PTHR20953 - - - GO:0005524,GO:0005622,GO:0006810 AT1G73170.2 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre12.g530876 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g13066.t1 - - - - - - - - - Cre01.g020850 CYG49 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 18 Adenylate/guanylate cyclase Protein with domain similar to guanylate cyclase [Aedes aegypti] g484.t1 PF07714,PF00211 PTHR11920 - - - GO:0004672,GO:0006468,GO:0009190,GO:0016849,GO:0035556 - - - Cre08.g363837 POLG1X,POL1A - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g8521.t1,POL1A,POLG1X PF00476 PTHR10133 - 2.7.7.7 K02335 GO:0003677,GO:0003887,GO:0006260 AT1G50840.1 POLGAMMA2 polymerase gamma 2 Cre01.g010700 SYP2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 16 Endosomal Qa-SNARE protein, Syntaxin7/Syx7/Pep12/Syp2-family (Qa.III.b) Endosomal Qa-SNARE protein, Syntaxin7/Syx7/Pep12/Syp2-family (Qa.III.b). Conserved Protein. Class Qa.III.b SNARE, involved in Golgi/endosomal trafficking (PMID: 17596510). Previously annotated as SYP2 g266.t1,Cre01.g010700.t1.1,SYP2 PF00804,PF05739 PTHR19957,PTHR19957:SF11 KOG0811 - K08488 GO:0016020,GO:0005515 AT5G46860.1 ATSYP22,ATVAM3,SGR3,SYP22,VAM3 Syntaxin/t-SNARE family protein Cre13.g580050 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - - - - g14251.t2, g14251.t1,Cre13.g580050.t1.1 PF00004 PTHR23074,PTHR23074:SF20 KOG0737 - - GO:0005524 AT5G53540.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre17.g717000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g17357.t1 PF02190 - - - - GO:0004176,GO:0006508 AT1G18660.1 - zinc finger (C3HC4-type RING finger) family protein Cre07.g354800 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g8253.t1 - - - - - - - - - Cre06.g269250 FKM5 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g6041.t1,Cre06.g269250.t1.1,FKM5 - - - - - - - - - Cre09.g393173 ELI2 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 4 Early light-inducible protein A homolog of ELIP (early light-inducible protein) gene which was originally identified as transiently expressed during the early phase of greening in etiolated pea seedlings [PMID: 6692824]. It has three TMH, whose sequences are closely related to LHC pro g9747.t1,Cre02.g129000.t1.1,Cre02.g129000.t1.2,ELI2 PF00504 PTHR14154 - - - - AT3G22840.1 ELIP,ELIP1 Chlorophyll A-B binding family protein Cre13.g589200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 10 - - g14455.t1 - - - - - - - - - Cre07.g327500 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g7618.t1,Cre07.g327500.t1.1 - - - - - - - - - Cre09.g387097 - 0 16 1.0 1.0 0 16 1.0 1.0 SP n - - - - g9577.t1,Cre02.g121450.t1.1,Cre02.g121450.t1.2 - - - - - - - - - Cre17.g698516 - 0 1 1.0 nan 0 1 1.0 nan - n - 15 - - g16941.t1,Cre17.g698519.t1.2 - - - - - - - - - Cre12.g541750 ZPD1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g13738.t1,ZPD1 PF01593 PTHR10668,PTHR10668:SF3 KOG4254 - - - AT1G57770.1 - FAD/NAD(P)-binding oxidoreductase family protein Cre02.g077850 FAP212 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g1405.t1,Cre02.g077850.t1.1 - - - - - - - - - Cre03.g182800 AGT2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 16 Alanine-glyoxylate transaminase Transaminase, Class III; similar to alanine-glyoxylate transaminase (EC 2.6.1.44); predicted by Target-P as mitochondrial; peroxisomal location supported by C-terminal PTS1 signal CKL g3789.t1,AGT2 PF00202 PTHR11986,PTHR11986:SF23 KOG1404 2.6.1.40,2.6.1.44 K00827 GO:0008483,GO:0030170 AT4G39660.1 AGT2 alanine:glyoxylate aminotransferase 2 Cre13.g569150 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g14004.t2,Cre13.g569150.t1.1, g14004.t1 - - - - - - - - - Cre16.g672397 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 12 Protein phosphatase 2C catalytic subunit Protein phosphatase 2C gamma homolog; serine/threonine protein phosphatase. Previously annotatated as PP2C2 g16120.t1,Cre01.g063100.t1.1,Cre01.g063100.t1.2 PF00481 PTHR13832,PTHR13832:SF140 KOG0697 3.1.3.16 K01090 GO:0003824 AT2G25070.1 - Protein phosphatase 2C family protein Cre08.g372600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g8726.t1,Cre08.g372600.t1.1 - - - - - - - - - Cre10.g465700 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g11411.t1,Cre10.g465700.t1.1 PF01082,PF03712,PF03351 PTHR10157:SF15,PTHR10157 - - - GO:0004497,GO:0005507,GO:0004500,GO:0006584,GO:0055114 - - - Cre02.g097800 HLA3,MRP1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 17 ABC transporter Putative ABC transporter, high light-induced, requiring both high light and low CO2 (ambient) levels for activation [PMID: 12000678]; MRP subfamily of ABC transporters [PMID: 15710683]; MRP1 is regulated by CCM1 [PMID: 15235119]. Previously annotated as g1989.t1,HLA3,MRP1 PF00664,PF00005 PTHR24223,PTHR24223:SF9 KOG0054 - K05672 GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT2G34660.1 ATMRP2,EST4,MRP2 multidrug resistance-associated protein 2 Cre10.g453650 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 10 - - g11136.t1,Cre10.g453650.t1.1 - - - - - - AT4G14970.1 - - Cre06.g305516 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g7072.t1, g7072.t2 - - - - - - - - - Cre12.g521950 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 5 - - g12856.t1 - PTHR18640:SF1,PTHR18640 KOG2718 - - - AT3G56160.1 - Sodium Bile acid symporter family Cre10.g455551 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 16 - - g11179.t1 - - - - - - - - - Cre06.g294150 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g6810.t1 - - - - - - - - - Cre05.g243900 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 - - g5258.t1 - - - - - - - - - Cre01.g021300 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g494.t1,Cre01.g021300.t1.1 - - - - - - - - - Cre16.g677450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g16567.t1,Cre16.g677450.t1.1 PF01263 PTHR11122:SF9,PTHR11122 KOG1594 - - GO:0005975,GO:0016853 AT5G66530.1 - Galactose mutarotase-like superfamily protein Cre14.g622900 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 8 - - g15012.t1 - - - - - - - - - Cre17.g724250 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g17516.t1 - - - - - - - - - Cre09.g413350 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10238.t1 - - - - - - - - - Cre02.g117950 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g2447.t1 - - - - - - AT5G01010.1 - - Cre10.g446400 KAT2 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 Katanin p60 catalytic subunit Putative katanin p60 catalytic subunit GI:6466293, PMID: 10401578 g10983.t1,KAT2 PF00004 PTHR23074,PTHR23074:SF19 KOG0739 - - GO:0005524 AT2G34560.2 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre08.g358950 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g8408.t2, g8408.t1 PF09731 - - - - GO:0031305 AT4G39690.1 - - Cre10.g439350 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 4 - - g10819.t1,Cre10.g439350.t1.1 - - - - - - AT1G55480.1 ZKT protein containing PDZ domain, a K-box domain, and a TPR region Cre06.g262000 SNR5 - 0 5 1.0 1.0 0 5 1.0 1.0 M n upregulated 10 - - g5887.t1,Cre06.g262000.t1.1,SNR5 PF09335 PTHR12677 - - - - AT1G03260.1 - SNARE associated Golgi protein family Cre13.g588550 SYP1 - 0 1 1.0 nan 0 1 1.0 nan O n - - Plasma membrane Qa-SNARE, Syx1/Sso1/Syntaxin1/Syp1 family (Qa.IV) Plasma membrane Qa-SNARE, Syx1/Sso1/Syntaxin1/Syp1 family (Qa.IV). Expressed Protein. Involved in Plasma Membrane trafficking. Class Q.IV SNARE, targeted to the plasma membrane (PMID: 17596510). Previously annotated as SYP1 g14438.t1,Cre13.g588550.t1.1,SYP1 PF00804,PF05739 PTHR19957:SF26,PTHR19957 KOG0810 - K08486 GO:0016020,GO:0005515 AT3G03800.1 ATSYP131,SYP131 syntaxin of plants 131 Cre13.g573600 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g14102.t1,Cre13.g573600.t1.1 - - - - - - - - - Cre11.g482101 - 0 12 1.0 1.0 0 12 1.0 1.0 SP n - 14 - - g11969.t1,Cre11.g482100.t1.2 PF10274 - - - - - - - - Cre16.g662951 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - - - - g16006.t1,Cre16.g662951.t1.1 PF00023,PF06985 PTHR24123,PTHR24123:SF297 KOG4412 - - GO:0005515 AT1G05640.1 - Ankyrin repeat family protein Cre16.g662950 ANK3 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g16005.t1,ANK3 - - - - - - - - - Cre13.g574375 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g14119.t1,Cre13.g574375.t1.1 - - - - - - - - - Cre09.g394584 GID2 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 Methyltransferase Probable methyltransferase activity; related to glucose inhibited division protein g9786.t1,Cre02.g130850.t1.1,GID2 PF02527 - - 2.1.-.- K03501 GO:0005737,GO:0006364,GO:0008649 AT5G50110.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre17.g739752 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g17893.t1 PF01434,PF00004 PTHR23076,PTHR23076:SF10 - - - GO:0004222,GO:0005524,GO:0006508 AT4G23940.1 - FtsH extracellular protease family Cre10.g440800 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g10848.t1 - - - - - - - - - Cre12.g506600 LPN1 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 18 - - g12437.t1,Cre12.g506600.t1.1,LPN1 PF04571,PF08235 PTHR12181 - - - - AT5G42870.2 ATPAH2,PAH2 phosphatidic acid phosphohydrolase 2 Cre03.g169100 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 - - g3481.t1 PF00069 PTHR24349:SF113,PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT1G49580.1 - Calcium-dependent protein kinase (CDPK) family protein Cre02.g112200 - 0 15 1.0 1.0 0 15 1.0 1.0 O n - 15 - - g2309.t1,Cre02.g112200.t1.1 PF00400,PF00520 PTHR22847,PTHR22847:SF184 KOG0319 - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre13.g568200 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g13982.t1 PF03407 PTHR10994:SF5,PTHR10994 - - - GO:0005783 AT2G35610.1 XEG113 xyloglucanase 113 Cre09.g397697 RPL4 - 0 1 1.0 nan 0 1 1.0 nan O n - - Ribosomal protein L4, component of cytosolic 80S ribosome and 60S large subunit Cytosolic 80S ribosomal protein L4; Cytosolic 60S large ribosomal subunit protein L4 g9871.t1,Cre02.g134700.t1.1,Cre02.g134700.t1.2,RPL4 PF00573 PTHR19431 KOG1475 - K02930 GO:0003735,GO:0005840,GO:0006412 AT5G02870.2 - Ribosomal protein L4/L1 family Cre03.g149001 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g3030.t1 - - - - - - - - - Cre03.g187650 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated - - - g3887.t1 PF04884 PTHR12770,PTHR12770:SF2 KOG4249 - - - AT5G01510.1 RUS5 Protein of unknown function, DUF647 Cre02.g109800 CPLD32,FAO3 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - - FAD-dependent oxidoreductase Conserved FAD dependent oxidoreductase; predicted targeting to mitochondrion for Arabidopsis homologue. Previously annotated as CPLD32 g2253.t1,FAO3 PF01266 - - - - GO:0016491 AT2G22650.1 - FAD-dependent oxidoreductase family protein Cre10.g460532 APC2,APC2b - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 - - g11290.t1,APC2 PF00888,PF08672 PTHR11932,PTHR11932:SF1 - - K03349 GO:0006511,GO:0031461,GO:0031625 AT2G04660.1 APC2 anaphase-promoting complex/cyclosome 2 Cre15.g640203 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g15395.t1 - - - - - - - - - Cre05.g245500 FAP175,ANK24 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 14 Flagellar Associated Protein with ankyrin repeats Protein of unknown function with ankyrin repeats, flagella associated; found in the flagellar proteome as FAP175 [PMID: 15998802] g5223.t2,ANK24, g5223.t1,ANK24 PF00023,PF06985 PTHR24123,PTHR24123:SF297 KOG4412 - - GO:0005515 AT5G14230.1 - - Cre12.g527650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 7 - - g12997.t1 - - - - - - - - - Cre10.g463250 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 - - g11352.t1 - - - - - - - - - Cre08.g377950 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g8898.t1,Cre08.g377950.t1.1 PF02622 - - - - - AT3G29240.1 - Protein of unknown function (DUF179) Cre12.g513200 PGH1 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Enolase Enolase (ENO); phosphoenolpyruvate hydratase; 2-phosphoglycerate dehydratase; EC 4.2.1.11 [GI:18143, Dumont et al. (1993) Plant Sci. 89, 55-67]; a single gene, product localization unsure: an N-terminal extension also found in Dunaliella and At1g74030 pot g12671.t1,Cre12.g513200.t1.1 PF03952,PF00113 PTHR11902 KOG2670 4.2.1.11 K01689 GO:0000015,GO:0000287,GO:0004634,GO:0006096 AT2G36530.1 ENO2,LOS2 Enolase Cre01.g048600 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 8 - - g1079.t1 - - - - - - AT2G39910.1 - ARM repeat superfamily protein Cre07.g348951 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 15 - - g8117.t1,Cre07.g348950.t1.3 PF10494 PTHR15243 - - - - AT2G20495.1 - - Cre12.g533750 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - - - g13129.t1 PF00632 PTHR11254,PTHR11254:SF143 KOG0940 - - GO:0005622,GO:0006464,GO:0016881 AT4G12570.1 UPL5 ubiquitin protein ligase 5 Cre07.g358001 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g8325.t1 - - - - - - - - - Cre01.g010880 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 13 - - g273.t1 PF00400,PF03451 PTHR13720,PTHR13720:SF6 KOG2106 - - - - - - Cre17.g727250 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 7 - - g17582.t1 - - - - - - - - - Cre01.g041855 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 - - g939.t1,Cre01.g041855.t1.1 PF00675 PTHR11851:SF64,PTHR11851 - - - GO:0004222,GO:0006508 AT3G57470.1 - Insulinase (Peptidase family M16) family protein Cre12.g532800 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g13108.t1,Cre12.g532800.t1.1 - - - - - - - - - Cre07.g323600 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g7475.t1 PF11317 - - - - - - - - Cre01.g002300 CYN19-2,CYN4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID: 15047905]; identical to AF052206 CYP1 [PMID: 10527429]; cytosolic; similar to At4g38740 (ROC1, AtCYP18-3) and At2g21130 (AtCYP19-2); found in the flagellar proteome [P g56.t1,Cre01.g002300.t1.1,CYN4 PF00160 PTHR11071:SF157,PTHR11071 KOG0865 5.2.1.8 K01802 GO:0003755,GO:0006457 AT2G21130.1 - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Cre03.g162100 PIMT2 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 Protein-L-isoaspartate O-methyltransferase Conserved protein similar to Protein-L-isoaspartate(D-aspartate) O-methyltransferase proteins. Previously annotated as PIMT2 g3322.t1,Cre03.g162100.t1.1,PIMT2 PF01135 PTHR11579 KOG1661 - - GO:0004719,GO:0006464 AT3G48330.1 ATPIMT1,PIMT1 protein-l-isoaspartate methyltransferase 1 Cre13.g562550 ARH1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 NADP adrenodoxin-like ferredoxin reductase Related to Adrenodoxin reductase / ferredoxin-NADP+ reductase [PMID: 12714594; PMID: 13677469]; possibly localized to mitochondria g13846.t1,ARH1 PF07992 PTHR11938:SF4,PTHR11938 KOG1800 1.18.1.2 K00528 - AT4G32360.1 - Pyridine nucleotide-disulphide oxidoreductase family protein Cre07.g319950 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g7399.t1,Cre07.g319950.t1.1 - - - - - - - - - Cre13.g587850 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g14420.t1, g14420.t3, g14420.t2 - - - - - - - - - Cre07.g351400 MCM10 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g8175.t1,Cre07.g351400.t1.1 PF09332,PF09329 PTHR13454 - - K10736 GO:0005634,GO:0006260 AT2G20980.1 MCM10 minichromosome maintenance 10 Cre07.g315600 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g7302.t1 - - KOG1951 - - - - - - Cre13.g580800 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g14266.t1 - - - - - - - - - Cre12.g486209 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 8 - - g12274.t1 PF00226 PTHR24078:SF23,PTHR24078 KOG1789 - - GO:0031072 AT2G26890.1 GRV2,KAM2 DNAJ heat shock N-terminal domain-containing protein Cre10.g425450 AOF5 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g10515.t1,Cre10.g425450.t1.1,AOF5 PF01593 PTHR13244 - - - - AT1G55980.1 - FAD/NAD(P)-binding oxidoreductase family protein Cre05.g247100 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g5190.t1 PF08757 - - - - - - - - Cre12.g514500 RPS11 - 0 1 1.0 nan 0 1 1.0 nan O n - - Ribosomal protein S11, component of cytosolic 80S ribosome and 40S small subunit Cytosolic 80S ribosomal protein S11; Cytosolic 40S small ribosomal subunit protein S11 g12697.t1,Cre12.g514500.t1.1 PF00366 PTHR10744 KOG1728 - K02949 GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT3G48930.1 EMB1080 Nucleic acid-binding, OB-fold-like protein Cre03.g205400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 - - g4205.t1 PF07707,PF00651,PF01344 PTHR24412 KOG4441 - - GO:0005515 AT5G01660.1 - - Cre09.g390467 CGL66 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 15 Predicted protein Conserved expressed protein g9669.t1,Cre02.g125850.t1.1,CGL66 PF04515 PTHR12385,PTHR12385:SF3 - - - - AT4G38640.1 - Plasma-membrane choline transporter family protein Cre17.g720800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g17444.t1 - - - - - - - - - Cre08.g375550 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 4 - - g8847.t1,Cre08.g375550.t1.1 PF08241 - - - - GO:0008152,GO:0008168 - - - Cre11.g479750 SRP54 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 4 - - g11909.t1,Cre11.g479750.t1.1,SRP54 PF00448,PF02978,PF02881 PTHR11564:SF7,PTHR11564 KOG0780 - K03106 GO:0005525,GO:0006614,GO:0008312,GO:0048500 AT5G03940.1 54CP,CPSRP54,FFC,SRP54CP chloroplast signal recognition particle 54 kDa subunit Cre12.g520850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g12833.t1,Cre12.g520850.t1.1 PF05669 PTHR13186 KOG4086 - - GO:0016455,GO:0006355,GO:0016592 AT5G19910.1 MED31 SOH1 family protein Cre11.g474700 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g11795.t1 PF01062 - - - - - AT2G45870.1 - Bestrophin-like protein Cre07.g343101 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g7981.t1,Cre07.g343100.t1.2 - - - - - - - - - Cre16.g675600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g16606.t1 - - - - - - - - - Cre10.g424850 SPL5,PRP31 - 0 1 1.0 nan 0 1 1.0 nan O n - - Pre-mRNA-splicing factor U4/U6 small nuclear ribonucleoprotein; similar to PRP31. Previously annotated as SPL5 g10502.t1,Cre10.g424850.t1.1,PRP31,SPL5 PF09785,PF08060,PF01798 PTHR13904 KOG2574 - K12844 - AT1G60170.1 emb1220 pre-mRNA processing ribonucleoprotein binding region-containing protein Cre11.g469100 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g11776.t1,Cre11.g469100.t1.1 - - - - - - AT2G36895.1 - - Cre05.g234658 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5377.t1,Cre24.g769050.t1.1,Cre24.g769050.t1.2 - - - - - - - - - Cre01.g044600 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 9 - - g997.t1,Cre01.g044600.t1.1 - PTHR10774:SF28,PTHR10774 KOG4744 - - - AT1G20080.1 ATSYTB,NTMC2T1.2,NTMC2TYPE1.2,SYT2,SYTB Calcium-dependent lipid-binding (CaLB domain) family protein Cre16.g676550 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 3 - - g16584.t1,Cre16.g676550.t1.1 - - - - - - - - - Cre16.g677600 SOM5 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 - - g16564.t1,Cre16.g677600.t1.1,SOM5 PF04072 - - - - GO:0008168 AT5G42760.1 - Leucine carboxyl methyltransferase Cre08.g360801 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 3 - - g8449.t1 - PTHR18901 - - - - AT3G10970.2 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre01.g003950 - 0 11 1.0 1.0 0 11 1.0 1.0 C n - 6 - - g99.t2, g99.t1 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre03.g179500 PHX8 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g3715.t1,Cre03.g179500.t1.1,PHX8 PF03171 PTHR10869 - - - GO:0016491 AT4G33910.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre02.g079600 TSF2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 4 - - g1454.t1,Cre02.g079600.t1.1,TSF2 PF01409,PF03147 PTHR11538,PTHR11538:SF16 KOG2783 6.1.1.20 K01889 GO:0000049,GO:0004812,GO:0005524,GO:0005737,GO:0043039,GO:0000287,GO:0004826,GO:0006432,GO:0008033 AT3G58140.1 - phenylalanyl-tRNA synthetase class IIc family protein Cre12.g497450 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 13 - - g12636.t1,Cre12.g497450.t1.1 PF00560 PTHR23155,PTHR23155:SF336 - - - GO:0005515 AT3G11330.1 PIRL9 plant intracellular ras group-related LRR 9 Cre16.g656900 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 15 - - g15876.t1,Cre16.g656900.t1.1 - PTHR12210:SF19,PTHR12210 - - - - - - - Cre16.g656300 DPR1 - 0 4 1.0 1.0 0 4 1.0 1.0 O Y - 6 Dihydrodipicolinate reductase Putative dihydropicolinate (DAP) reductase (EC 1.3.1.26); based on homology to Arabidopsis dihydropicolinate reductase (GenBank NP_974464); expected to be plastidic based on homology but no organelle targeting predicted by Target-P; may be missing an N-te g15863.t1 PF01113 PTHR20836 - - - GO:0008839,GO:0009089,GO:0055114,GO:0070402 AT2G44040.1 - Dihydrodipicolinate reductase, bacterial/plant Cre01.g030000 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated - - - g681.t1 - - - - - - - - - Cre08.g383900 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 18 - - g9036.t1 PF00097 - - - - - - - - Cre11.g477750 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 13 - - g11861.t1,Cre11.g477750.t1.1 PF01437 - - - - GO:0016020 - - - Cre03.g144264 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 18 - - g2877.t1,Cre01.g056900.t1.1 PF00069 PTHR23257,PTHR23257:SF301 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre12.g513350 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 17 - - g12674.t1 - - - - - - - - - Cre07.g313600 CGL33A - 0 1 1.0 nan 0 1 1.0 nan O Y - - S-adenosyl-L-methionine-dependent methyltransferase Conserved S-adenosyl-L-methionine-dependent methyltransferase; note linked homolog. Previously annotated as CGL33A g7258.t1,Cre07.g313600.t1.1 - - - - - - AT5G44600.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre02.g141950 MOT19 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g2652.t1,MOT19 PF03765,PF00650 PTHR23324,PTHR23324:SF5 KOG1471 - - - AT4G39170.1 - Sec14p-like phosphatidylinositol transfer family protein Cre12.g539050 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g13252.t1 PF08700 PTHR21426 - - - - AT1G10385.1 - Vps51/Vps67 family (components of vesicular transport) protein Cre12.g516650 STPK6,STK6 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n downregulated 16 Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK6 g12743.t1,STK6,STPK6 PF07714 PTHR26392:SF156,PTHR26392 KOG0192 - - GO:0004672,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre16.g659300 CYB2,CYB5-2 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 Cytochrome b5 protein Cytochrome b5 protein with possible nitrate reductase activity. Previously annotated as CYB5-2 g15927.t1,CYB2,CYB5-2 PF00173 PTHR19359 KOG0537 - - GO:0020037 AT1G26340.1 ATCB5-A,B5 #6,CB5-A cytochrome B5 isoform A Cre06.g305650 TIC55-4,PAO6 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 13 Pheophorbide a oxygenase, Rieske iron-sulfur cluster protein Pheophorbide a oxygenase. Previously annotated as TIC55-4 g7075.t1,Cre06.g305650.t1.1,PAO6,TIC55-4 PF08417,PF00355 PTHR21266,PTHR21266:SF3 - - - GO:0010277,GO:0055114,GO:0016491,GO:0051537 AT3G44880.1 ACD1,LLS1,PAO Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain Cre03.g166900 CYP767A1,CYP15 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n - - Cytochrome P450, CYP4 superfamily Cytochrome P450, CYP4 superfamily. Previously annotated as CYP767A1 g3425.t1,CYP15, g3425.t2,CYP15 PF00067 PTHR24301,PTHR24301:SF127 KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT5G25140.1, AT4G37430.1 CYP71B13, CYP81F1,CYP91A2 cytochrome P450, family 71, subfamily B, polypeptide 13, cytochrome P450, family 91, subfamily A, polypeptide 2 Cre16.g682400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g16454.t1,Cre16.g682400.t1.1 - - - - - - - - - Cre10.g423850 SRR26 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 11 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) proteins. g10482.t1,SRR26, g10482.t2,SRR26 PF00530 PTHR19331,PTHR19331:SF376 - - - GO:0005044,GO:0016020 - - - Cre02.g081850 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g1499.t1 - - - - - - - - - Cre17.g745097 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 9 - - g18018.t1,Cre20.g759700.t1.1 PF02469 PTHR10900:SF53,PTHR10900 - - - - - - - Cre04.g230536 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 15 - - g5042.t1 PF00530 PTHR26392,PTHR26392:SF98 - - - GO:0005044,GO:0016020 - - - Cre16.g685750 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated - - - g16381.t1 - - - - - - - - - Cre08.g369250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g8652.t1,Cre08.g369250.t1.1 - - - - - - - - - Cre01.g031350 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g709.t1,Cre01.g031350.t1.1 - - - - - - - - - Cre17.g698233 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g16933.t1 PF03110,PF00651 - - - - GO:0003677,GO:0005634,GO:0005515 AT5G43270.1 SPL2 squamosa promoter binding protein-like 2 Cre17.g724900 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g17531.t1,Cre17.g724900.t1.1 - - - - - - - - - Cre03.g201400 PPP16,PP2C6 - 0 4 1.0 1.0 0 4 1.0 1.0 O Y - 8 Phosphoprotein phosphatase 2C Protein phosphatase type 2C - cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatas g4295.t1,Cre03.g201400.t1.1,PP2C6 PF00481 PTHR13832,PTHR13832:SF187 KOG0698 - - GO:0003824 AT1G09160.1 - Protein phosphatase 2C family protein Cre14.g633789 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 18 - - g15280.t1,Cre14.g633789.t1.1 PF00249 PTHR10641 - - - - AT3G27785.1 ATMYB118,MYB118,PGA37 myb domain protein 118 Cre03.g211633 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 17 Similar to Flagellar Associated Protein FAP165 Similar to Flagellar Associated Protein FAP165 that is found in the flagellar proteome [PMID: 15998802]. This overlaps with FAP165 gene model from v3. Possible erythromycin esterase g4473.t1,Cre19.g756600.t1.1,Cre19.g756600.t1.2 PF05139 - - - - GO:0046677 - - - Cre17.g708400 SUB12 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 14 - - g17163.t1,Cre17.g708400.t1.1,SUB12 PF00082 PTHR10795,PTHR10795:SF157 - - - GO:0004252,GO:0006508 - - - Cre01.g034200 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 16 - - g771.t1 PF01547,PF00211 PTHR11017 - - - GO:0005215,GO:0006810,GO:0009190,GO:0016849,GO:0035556 - - - Cre13.g603700 ACT1,NSG4 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 8 Actin Actin, encoded by the IDA5 locus [gi:34581636, PMID: 9151671]; flagellar inner arm dynein subunit. Previously annotated as ACTIN. Identified by Abe et al. 2004 [PMID: 15459796] as NSG4, a gene expressed during nitrogen-starved gametogenesis. Listed by R g14567.t1,Cre13.g603700.t1.1,ACT1,NSG4 PF00022 PTHR11937,PTHR11937:SF77 KOG0676 - K05692 - AT3G12110.1 ACT11 actin-11 Cre12.g489950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g12186.t1,Cre12.g489950.t1.1 - - - - - - - - - Cre08.g368250 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g8631.t1 - - - - - - - - - Cre17.g697406 - 1 51 1.0 1.0 1 51 1.0 1.0 M n upregulated 2 - - g16913.t1,Cre17.g697406.t1.1 - - - - - - - - - Cre07.g333746 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g7771.t1 PF00628 - - - - GO:0005515 AT3G01460.1 ATMBD9,MBD9 methyl-CPG-binding domain 9 Cre06.g294450 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 13 - - g6816.t1 PF00248 PTHR11732:SF88,PTHR11732 KOG1575 - - GO:0016491,GO:0055114 AT1G06690.1 - NAD(P)-linked oxidoreductase superfamily protein Cre17.g742300 GST14,FAP179 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Glutathione S-transferase Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. Glutathione-S-transferase with possible prostaglandin-D synthase activity. Previously annotated as FAP179 g17953.t1,GST14 PF02798,PF00043 PTHR11571,PTHR11571:SF2 KOG1695 2.5.1.18 K00799 GO:0005515 AT2G30870.1 ATGSTF10,ATGSTF4,ERD13,GSTF10 glutathione S-transferase PHI 10 Cre17.g727801 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 18 - - g17594.t1,Cre17.g727800.t1.3 - - - - - - - - - Cre14.g630787 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g15192.t1 - - - - - - - - - Cre02.g142366 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 10 - - g2766.t1 PF05548 - - - - - - - - Cre09.g414350 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 - - g10261.t1 PF04825,PF04824 PTHR12585 - - - GO:0005515,GO:0000228 AT5G16270.1 ATRAD21.3,SYN4 sister chromatid cohesion 1 protein 4 Cre01.g016050 PRP8 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Splicing factor, component of the U5 snRNP and of the spliceosome Central component of the spliceosome, which may play a role in aligning the pre-mRNA 5\' and 3\' exons for ligation. Interacts with U5 snRNA, and with pre-mRNA 5\' splice sites in B spliceosomes and 3\' splice sites in C spliceosomes. Part of the U5 snRNP com g382.t1,Cre01.g016050.t1.1,PRP8 PF10598,PF12134,PF08084,PF08083,PF10596,PF08082,PF10597,PF01398 PTHR11140 KOG1795 - K12856 GO:0000398,GO:0005681,GO:0005515 AT1G80070.1 EMB14,EMB177,EMB33,SUS2 Pre-mRNA-processing-splicing factor Cre03.g200750 DMC1 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 16 - - g4311.t1,DMC1, g4311.t2,DMC1 PF00145 PTHR10629 - - - GO:0003677,GO:0006306 AT1G80740.1 CMT1,DMT4 chromomethylase 1 Cre16.g684000 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 13 - - g16420.t1 PF09409,PF08325 PTHR23153,PTHR23153:SF20 KOG4842 - - - AT5G35690.1 - - Cre17.g700250 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g16983.t1,Cre17.g700250.t1.1 - - - - - - - - - Cre16.g680588 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 17 - - g16144.t1,Cre01.g064100.t1.1 - PTHR12509 - - - - - - - Cre04.g222750 CCP2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 5 Low-CO2-inducible chloroplast envelope protein Low-CO2-inducible 36kD achloroplast envelope protein (LIP36-2), CO2-responsive gene; related to mitochondrial carriers; Chen et al. 1997 [PMID: 9159951]. CCP2 and LCID are located in head-to-head orientation. Acclimation to changing CO2 concentrations an g4860.t1,CCP2 PF00153 PTHR24089:SF129,PTHR24089 KOG0758 - K03454 - AT5G46800.1 BOU Mitochondrial substrate carrier family protein Cre16.g660850 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g15960.t1,Cre16.g660850.t1.1 - - - - - - AT3G59800.1 - - Cre17.g712600 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17255.t1,Cre17.g712600.t1.1 - - - - - - - - - Cre01.g038750 MOT7 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 12 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g867.t1,Cre01.g038750.t1.1 - - - - - - - - - Cre17.g696750 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g16900.t1 PF00249 - - - - - AT5G59570.1 - Homeodomain-like superfamily protein Cre13.g567250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g13958.t1 - - - - - - - - - Cre03.g170900 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 15 - - g3521.t1 - - - - - - - - - Cre03.g202450 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g4271.t1 - - - - - - - - - Cre06.g287750 PYR8 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g6683.t1,Cre06.g287750.t1.1,PYR8 PF01180 PTHR11938:SF36,PTHR11938 - - - GO:0004152,GO:0006222,GO:0055114 AT5G23300.1 PYRD pyrimidine d Cre04.g227568 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 18 - - g4980.t1,Cre04.g227568.t1.1 - - - - - - - - - Cre01.g026200 PPR9 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 3 Pentatrichopeptide repeat protein - g602.t1,Cre01.g026200.t1.1 PF01535 PTHR24633 - - - - AT4G37380.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre13.g607700 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g14650.t1,Cre13.g607700.t1.1 - - - - - - - - - Cre04.g213300 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g4711.t1,Cre04.g213300.t1.1 - - - - - - - - - Cre08.g371000 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 - - g8692.t1 - - - - - - - - - Cre09.g415400 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g10285.t1 PF08314 PTHR15922,PTHR15922:SF2 - - - - AT5G24350.1 - - Cre03.g159650 EFG6 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 1 GTP binding protein Putative GTP-binding protein 1, GP-1, elongation factor Tu domains g3269.t1,Cre03.g159650.t1.1 PF00009,PF03144,PF03143 PTHR23115:SF50,PTHR23115 KOG0463 - - GO:0003924,GO:0005525 - - - Cre16.g670400 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 9 - - g16221.t2, g16221.t1 - - KOG4744 - - - AT5G44310.2 - Late embryogenesis abundant protein (LEA) family protein Cre02.g110450 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g2267.t1,Cre02.g110450.t1.1 PF06201 PTHR12175 KOG1730 - - - AT2G25950.1 - Protein of unknown function (DUF1000) Cre14.g625600 FHL2,FHL10 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 10 - - g15069.t1,FHL10 PF02010 - KOG4672 - - - - - - Cre16.g649700 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 3 - - g15720.t1 PF00856 PTHR13271 - - - GO:0005515 AT4G20130.1 PTAC14 plastid transcriptionally active 14 Cre01.g014751 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g357.t1 - - - - - - - - - Cre14.g614050 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g14795.t1 PF03999 PTHR19321 KOG4302 - - - AT1G27920.1 MAP65-8 microtubule-associated protein 65-8 Cre12.g533201 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g13117.t1 - - - - - - - - - Cre16.g672800 GMP1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 GDP-D-mannose pyrophosphorylase GDP-D-mannose pyrophosphorylase (D-mannose-1-phosphate guanylyltransferase); a nucleotidyl transferase g16667.t1,Cre16.g672800.t1.1,GMP1 PF00483,PF00132 PTHR22572 KOG1322 2.7.7.22 K00971 GO:0009058,GO:0016779 AT2G39770.1 CYT1,EMB101,GMP1,SOZ1,VTC1 Glucose-1-phosphate adenylyltransferase family protein Cre01.g039400 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g880.t1 PF00561 PTHR10992,PTHR10992:SF52 KOG4178 - - - AT1G80280.1 - alpha/beta-Hydrolases superfamily protein Cre02.g114150 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 - - g2357.t1 - - - - - - - - - Cre02.g088100 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g1639.t1,Cre02.g088100.t1.1 - - - - - - - - - Cre17.g699000 PAT1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 9 Phosphate acetyltransferase Putative phosphate acetyltransferase (EC 2.3.1.8); phosphotransacetylase; similarity to prokaryotic phosphate acetyltransferase (e.g., Desulfovibrio GenBank AAS97500) g16954.t2, g16954.t1,Cre17.g699000.t1.1 PF01515,PF07085 PTHR23406:SF3,PTHR23406 - - - GO:0008152,GO:0008415 - - - Cre10.g451752 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 5 - - g11098.t1 PF12499 - - - - - - - - Cre10.g428692 - 0 9 1.0 1.0 0 9 1.0 1.0 O n upregulated 15 - - g10588.t1,Cre69.g794101.t1.1,Cre69.g794101.t1.2 - - - - - - - - - Cre16.g687060 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g16350.t1,Cre16.g687060.t1.1 - - - - - - - - - Cre09.g390875 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g9680.t1,Cre02.g126200.t1.1 - - - - - - - - - Cre09.g390689 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g9675.t1 - - - - - - - - - Cre02.g085701 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g1586.t1,Cre02.g085700.t1.3 PF00097 PTHR22766,PTHR22766:SF19 - - - - AT2G39100.1 - RING/U-box superfamily protein Cre02.g092650 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g1737.t1 - - - - - - - - - Cre13.g576900 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g14177.t1 - - - - - - - - - Cre06.g283050 LHCA1 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Light-harvesting protein of photosystem I - g6583.t1,Cre06.g283050.t1.1 PF00504 PTHR21649 - - K08907 GO:0009765,GO:0016020 AT3G54890.1 LHCA1 photosystem I light harvesting complex gene 1 Cre12.g543800 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g13693.t1,Cre12.g543800.t1.1, g13693.t2 - - - - - - - - - Cre14.g632000 CGE2 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 4 GrpE nucleotide release factor CGE2 is similar to CGE1 and contains motifs typical for chloroplast-targeted GrpE homologs [PMID: 11752390, 16143837] g15230.t1 PF01025 PTHR21237,PTHR21237:SF4 - - - GO:0000774,GO:0006457,GO:0042803,GO:0051087 AT5G17710.2 EMB1241 Co-chaperone GrpE family protein Cre13.g577050 ELG7 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g14181.t1,ELG7 PF03016,PF07974 PTHR11062 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre11.g477100 FAP97 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Flagellar Associated Protein, serine endopeptidase Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. Similar to IgA-specific serine peptidase g11848.t1,Cre11.g477100.t1.1 - - - - - - - - - Cre03.g198250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 - - g4111.t1,Cre03.g198250.t1.1 - - - - - - - - - Cre09.g390700 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 14 - - g9478.t1 - - - - - - - - - Cre12.g510300 UBC21 - 0 11 1.0 1.0 0 11 1.0 1.0 C n - - - - g12343.t1,UBC21 PF00179,PF10408 PTHR13931,PTHR13931:SF8 KOG0417 - - GO:0016881,GO:0000151,GO:0006511,GO:0016567,GO:0034450 AT3G15355.1 PFU1,UBC25 ubiquitin-conjugating enzyme 25 Cre01.g022000 SPA1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g508.t1,SPA1 PF00004 PTHR23074,PTHR23074:SF17 KOG0740 - - GO:0005524 AT3G27120.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre01.g051700 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1146.t2, g1146.t1 PF00097 PTHR14155:SF10,PTHR14155 - - - - AT1G04790.1 - RING/U-box superfamily protein Cre12.g506250 HTA18 - 0 1 1.0 nan 0 1 1.0 nan C n - - Histone H2A Replication-linked Histone H2A g12444.t1,Cre12.g506250.t1.1,HTA18 PF00125 PTHR23430 KOG1756 - K11251 GO:0003677 AT1G51060.1 HTA10 histone H2A 10 Cre06.g295550 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 11 - - g6841.t1,Cre06.g295550.t1.1 PF07883 - - - - - - - - Cre01.g055465 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1238.t1,Cre23.g767850.t1.1,Cre23.g767850.t1.2 PF00650 PTHR10174:SF78,PTHR10174 KOG1470 - - - AT1G01630.1 - Sec14p-like phosphatidylinositol transfer family protein Cre02.g089274 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g1665.t1 PF00023,PF00415 PTHR22870,PTHR22870:SF6 - - - GO:0005515 AT3G03790.2 - ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein Cre17.g697350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g16912.t1,Cre17.g697350.t1.1 PF05700 PTHR13296 KOG3096 - K12861 - AT3G18165.1 MOS4 modifier of snc1,4 Cre09.g411400 DAP1,MOT45 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - PF13 protein required for dynein inner/outer arm assembly in the cytoplasm PF13 protein required for dynein inner/outer arm assembly in the cytoplasm. Contains a PIH (protein interacting with HSP90) domain. Identified by comparative genomics as being present only in organisms having motile (MOT) cilia. Previously annotated as g10186.t1,Cre09.g411400.t1.1,MOT45 - - - - - - - - - Cre01.g053700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g1187.t1 PF00027 PTHR10217:SF393,PTHR10217 KOG0500 - - - AT3G02850.1 SKOR STELAR K+ outward rectifier Cre16.g674403 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g16721.t2,Cre01.g065900.t1.1,Cre01.g065900.t1.2, g16721.t1,Cre01.g065900.t2.1 PF00069 PTHR24349:SF122,PTHR24349 - - - GO:0004672,GO:0005524,GO:0006468 AT3G07980.1 MAP3KE2,MAPKKK6 mitogen-activated protein kinase kinase kinase 6 Cre12.g522950 MIND1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 Chloroplast septum site-determining protein Putative chloroplast septum site-determining protein MinD. Chloroplast-encoded in other Chlorophyte algae. Characterized by Adams et al. 2008 [PMID: 18270733]. g12878.t1,Cre12.g522950.t1.1 PF01656 PTHR13696:SF1,PTHR13696 KOG3022 - K03609 - AT5G24020.1 ARC11,ATMIND1,MIND septum site-determining protein (MIND) Cre09.g412175 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - - - - g10205.t1 PF00561 PTHR10992:SF209,PTHR10992 KOG1454 - - - - - - Cre10.g452500 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g11114.t1,Cre10.g452500.t1.1 PF08159 PTHR12202 - - - GO:0005634 AT3G01160.1 - - Cre12.g555600 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 10 - - g13420.t1 - - - - - - - - - Cre10.g457750 SULTR1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11229.t1,Cre10.g457750.t1.1 PF01740,PF00916 PTHR11814:SF46,PTHR11814 KOG0236 - - GO:0005215,GO:0006810,GO:0016021,GO:0055085 AT3G12520.1 SULTR4;2 sulfate transporter 4;2 Cre03.g144484 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g2888.t1,Cre01.g057350.t1.1 PF00069 PTHR24347,PTHR24347:SF116 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT5G23580.1 ATCDPK9,ATCPK12,CDPK9,CPK12 calmodulin-like domain protein kinase 9 Cre07.g325700 SRH15 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7576.t1,Cre07.g325700.t1.1,SRH15 PF00176 PTHR10799,PTHR10799:SF92 - - - GO:0003677,GO:0005524 AT2G46020.2 ATBRM,BRM,CHA2,CHR2 transcription regulatory protein SNF2, putative Cre14.g622650 - 0 1 1.0 nan 0 1 1.0 nan SP n - 18 - - g15007.t1 - - - - - - - - - Cre06.g283150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6585.t1,Cre06.g283150.t1.1 - - - - - - AT3G21865.1 PEX22 peroxin 22 Cre14.g610750 MAE16 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 8 - - g14724.t1,MAE16 PF01554 PTHR11206 KOG1347 - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT1G71140.1 - MATE efflux family protein Cre02.g095650 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 8 - - g1942.t1 PF01494 PTHR13789,PTHR13789:SF68 KOG2614 - - GO:0004497,GO:0055114 AT5G11330.1 - FAD/NAD(P)-binding oxidoreductase family protein Cre16.g665250 APE1 - 0 1 1.0 nan 0 1 1.0 nan C Y - 6 Thykaloid associated protein required for photosynthetic acclimation to variable light intensity Homolog of Arabidopsis APE1 (Acclimation of Photosynthesis to Environment) that is required for acclimation of photosynthesis to various light intensity; = TEF6, found in thylakoid proteome by Hippler and co-workers g16056.t1,Cre16.g665250.t1.1 PF11016 - - - - - AT5G38660.1 APE1 acclimation of photosynthesis to environment Cre01.g011630 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 4 - - g290.t1,Cre01.g011650.t1.3, g290.t2,Cre01.g011650.t2.1 PF00188 PTHR10334,PTHR10334:SF7, PTHR10334 KOG3017 - - - AT4G33730.1 - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Cre09.g405000 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g9153.t1,Cre09.g405000.t1.1 - - - - - - - - - Cre03.g161100 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 7 - - g3302.t1 - PTHR11667:SF18,PTHR11667 KOG0166 - - - AT5G03070.1 IMPA-9 importin alpha isoform 9 Cre13.g602425 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g14558.t1 - - - - - - - - - Cre09.g396700 ACK1 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 11 Acetate kinase Acetate Kinase; Acetokinase; Potential N-terminal organelle targeting sequence g9352.t1,Cre09.g396700.t1.1,ACK1 PF00871 PTHR21060,PTHR21060:SF11 - 2.7.2.1 K00925 GO:0005622,GO:0008152,GO:0016301,GO:0016310,GO:0016774,GO:0006082 - - - Cre16.g656466 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g15867.t1 - - - - - - - - - Cre07.g326250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 2 - - g7587.t1 - - - - - - - - - Cre16.g661950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g15985.t1,Cre16.g661950.t1.1 - - - - - - - - - Cre13.g606550 - 0 1 1.0 nan 0 1 1.0 nan M n - 2 - - g14624.t1 - - - - - - - - - Cre01.g033000 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 15 - - g745.t1,Cre01.g033000.t1.1 - - - - - - - - - Cre06.g266900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 5 - - g5990.t1 PF11998 - - - - - AT4G28740.1 - - Cre17.g709500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g17185.t1 PF00069 PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT1G73670.1 ATMPK15,MPK15 MAP kinase 15 Cre06.g278086 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g6230.t1,Cre13.g592900.t1.1,Cre13.g592900.t1.2 PF01042 PTHR11803 KOG2317 - - - AT3G20390.1 - endoribonuclease L-PSP family protein Cre16.g695500 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g15558.t1, g15558.t2 PF05631 PTHR24003,PTHR24003:SF315 KOG4332 - - - AT4G27720.1, AT1G64650.1 - Major facilitator superfamily protein Cre13.g566500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g13940.t1,Cre13.g566500.t1.1, g13940.t2 - - - - - - - - - Cre12.g558400 TRR2 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g13361.t1,TRR2 PF01702 PTHR11962 KOG3908 2.4.2.29 K00773 GO:0006400,GO:0008479,GO:0008616 - - - Cre09.g394700 RNZ1 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 3 - - g9396.t1,RNZ1 PF02037 PTHR12553:SF6,PTHR12553 - - - GO:0003676 - - - Cre07.g317350 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g7335.t1,Cre07.g317350.t1.1 - - - - - - - - - Cre04.g228750 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g5006.t1 - - - - - - - - - Cre03.g154050 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 12 - - g3138.t1,Cre03.g154050.t1.1 - - - - - - - - - Cre03.g202200 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g4278.t1 - - - - - - - - - Cre13.g584650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g14351.t1,Cre13.g584650.t1.1 - - - - - - - - - Cre03.g202202 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 16 - - g4277.t2,Cre03.g202202.t1.1, g4277.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre16.g678213 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g16756.t1,Cre01.g067300.t1.1 PF02089 PTHR11247:SF8,PTHR11247 KOG2541 3.1.2.22 K01074 GO:0006464,GO:0008474 AT4G17483.1 - alpha/beta-Hydrolases superfamily protein Cre12.g511952 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 14 - - g12309.t1 - - - - - - - - - Cre12.g511950 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - - - g12308.t1,Cre12.g511950.t1.1 PF00560,PF08263 PTHR24420 - - - GO:0005515 AT1G35710.1 - Protein kinase family protein with leucine-rich repeat domain Cre16.g693900 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 - - g15599.t1 PF04720 - - - - - AT2G20670.1 - Protein of unknown function (DUF506) Cre06.g270726 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6074.t1 - - - - - - - - - Cre08.g361200 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 13 - - g8458.t1,Cre08.g361200.t1.1, g8458.t2 - - - - - - - - - Cre01.g019000 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 - - g446.t1,Cre01.g019000.t1.1 PF06094 - - - - - AT2G24390.1 - AIG2-like (avirulence induced gene) family protein Cre17.g725301 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17541.t1,Cre17.g725300.t1.3 PF00076 PTHR23003:SF11,PTHR23003 KOG0144 - - GO:0003676 AT2G36660.1 PAB7 poly(A) binding protein 7 Cre09.g404351 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g9173.t1,Cre09.g404300.t1.3 PF00856 PTHR12197:SF80,PTHR12197 - - - GO:0005515 - - - Cre09.g404350 XPO4 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g9172.t1,Cre09.g404350.t1.1,XPO4 - PTHR12596 - - - - AT3G04490.1 - - Cre06.g260750 CYG23 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 Adenylate/guanylate cyclase Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g5859.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre10.g448300 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 10 - - g11023.t1 - PTHR10361,PTHR10361:SF0 - - - GO:0006814,GO:0008508,GO:0016020 - - - Cre03.g166450 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g3416.t1 - - - - - - - - - Cre02.g096100 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g1951.t1,Cre02.g096100.t1.1 - - - - - - - - - Cre02.g086428 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g1603.t1 - - - - - - - - - Cre12.g509150 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g12369.t1 - - - - - - - - - Cre01.g005400 SDR1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g130.t1,SDR1 PF00106 PTHR24322 KOG0725 - - GO:0008152,GO:0016491 AT1G54870.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre09.g409050 OTU6 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g10138.t1,Cre09.g409050.t1.1,OTU6 PF02338 PTHR13312 KOG3288 3.1.2.- K13719 - AT1G50670.1 - OTU-like cysteine protease family protein Cre02.g114300 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g2360.t1 - - - - - - - - - Cre13.g564900 MRP3 - 0 8 1.0 1.0 0 8 1.0 1.0 O n upregulated 18 ABC transporter, multidrug resistance associated protein Putative ABC transporter, MRP subfamily, membrane protein PMID: 15710683 g13898.t1,Cre13.g564900.t1.1,MRP3 PF00664,PF00005 PTHR24223,PTHR24223:SF195 KOG0054 - - GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT2G34660.1 ATMRP2,EST4,MRP2 multidrug resistance-associated protein 2 Cre09.g398252 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 4 Short-chain dehydrogenase/reductase Short-chain dehydrogenase/reductase. Similar to Tic32 from Pisum sativum (AAS38575); belongs to the classical family of short chain dehydrogenases [PMID: 15180984] g9887.t1,Cre02.g135400.t1.1,Cre02.g135400.t1.2 PF00106 PTHR24320 KOG1208 1.1.1.- K11162 GO:0008152,GO:0016491 AT4G23430.2 - NAD(P)-binding Rossmann-fold superfamily protein Cre12.g557600 ADK4 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 Adenylate kinase Putative adenylate kinase g13378.t1,ADK4 PF00406,PF05191 PTHR23359 KOG3078 2.7.4.3 K00939 GO:0005524,GO:0006139,GO:0019205,GO:0004017 AT5G63400.1 ADK1 adenylate kinase 1 Cre13.g587300 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 17 - - g14408.t1 - - - - - - - - - Cre02.g113350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g2334.t1,Cre02.g113350.t1.1 PF07714 PTHR23257:SF362,PTHR23257 - - - GO:0004672,GO:0006468 AT2G24360.1 - Protein kinase superfamily protein Cre09.g389801 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9651.t1,Cre02.g124950.t2.1, g9651.t2,Cre02.g124950.t1.1,Cre02.g124950.t1.2 PF08854 - - - - - - - - Cre06.g273450 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g6135.t1 - - - - - - - - - Cre04.g220250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g4804.t1 PF00651 PTHR26379,PTHR26379:SF178 KOG4591 - - GO:0005515 AT5G19330.1 ARIA ARM repeat protein interacting with ABF2 Cre16.g691500 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 16 - - g15651.t1,Cre16.g691500.t1.1 - PTHR11106,PTHR11106:SF27 - - - - AT4G35750.1 - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Cre14.g632250 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g15235.t1 PF07707 PTHR24412:SF248,PTHR24412 - - - - - - - Cre03.g180500 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g3741.t1 - - - - - - AT3G23255.2 - - Cre12.g551600 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n - - - - g13511.t1,Cre12.g551600.t1.1 - - - - - - - - - Cre08.g374950 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 17 - - g8835.t1 PF02582 PTHR16255 - - - - - - - Cre01.g041300 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g924.t1,Cre01.g041300.t1.1 PF04922 PTHR12989,PTHR12989:SF10 KOG2642 2.4.1.- K03850 GO:0016021,GO:0016758 AT5G02410.1 - DIE2/ALG10 family Cre02.g090689 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g1695.t1,Cre02.g090689.t1.1 - - - - - - - - - Cre01.g040650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g911.t3, g911.t2, g911.t1 PF06011 - - - - - - - - Cre03.g199647 EIF4A - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Eukaryotic translation initiation factor 4A Eukaryotic translation initiation factor 4A. Previously annotated as EIF4A3 g4363.t1,Cre19.g751750.t1.1,Cre19.g751750.t1.2,EIF4A PF00271,PF00270 PTHR24031:SF143,PTHR24031 KOG0328 3.6.4.13 K13025 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT3G19760.1 EIF4A-III eukaryotic initiation factor 4A-III Cre07.g334950 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - - - - g7799.t1 PF00069,PF07714 PTHR23257:SF364,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre09.g406851 CDH1 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g10086.t1,Cre09.g406850.t1.3 PF00400 PTHR19918 KOG0305 - K03364 - AT4G22910.1 CCS52A1,FZR2 FIZZY-related 2 Cre01.g004750 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g115.t2, g115.t1 - - - - - - AT3G59440.1 - Calcium-binding EF-hand family protein Cre02.g119500 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g2480.t1 - PTHR24362,PTHR24362:SF96 - - - - - - - Cre01.g001983 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 5 - - g46.t2, g46.t1 - - - - - - - - - Cre02.g090350 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g1687.t1 - - - - - - - - - Cre10.g435950 OPR47 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g10749.t1 - - - - - - - - - Cre13.g571902 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 7 - - g14064.t1 - PTHR11795:SF296,PTHR11795 - - - - - - - Cre06.g264500 - 0 1 1.0 nan 0 1 1.0 nan C n - 2 - - g5942.t1,Cre06.g264500.t1.1 - PTHR12311,PTHR12311:SF2 KOG3152 - - - AT3G56510.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre14.g621300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g14973.t2, g14973.t1 PF03194 PTHR12375,PTHR12375:SF18 KOG0796 - - - AT5G51410.1 - LUC7 N_terminus domain-containing protein Cre02.g110100 MLO1 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 17 - - g2259.t1,MLO1 PF03094 PTHR10891 KOG0027 - - GO:0008219,GO:0016021 AT2G17430.1 ATMLO7,MLO7 Seven transmembrane MLO family protein Cre01.g034875 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g787.t1 - - - - - - - - - Cre01.g051550 HEL8 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 16 DEAD/DEAH box helicase Contains a conserved C-terminal C2H2 Zn-finger domain; this particular helicase has been identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia. Previously annotated as SSA9 g1144.t1,HEL8 PF00271,PF07717,PF04408 PTHR18934 KOG0922 - - GO:0003676,GO:0004386,GO:0005524 AT3G26560.1 - ATP-dependent RNA helicase, putative Cre10.g466350 CDPK2 - 0 1 1.0 nan 0 1 1.0 nan O Y - - Calcium/calmodulin-dependent protein kinase Calcium/calmodulin-dependent protein kinase. Conserved ser/thr protein kinase related to OST1 of Arabidopsis g11430.t1,CDPK2 PF00069 PTHR24343,PTHR24343:SF58 KOG0583 2.7.11.1 K14498 GO:0004672,GO:0005524,GO:0006468 AT4G33950.1 ATOST1,OST1,P44,SNRK2-6,SNRK2.6,SRK2E Protein kinase superfamily protein Cre06.g286350 UMM6 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 4 - - g6654.t1,Cre06.g286350.t1.1,UMM6 PF08241 PTHR10108,PTHR10108:SF239 - - - GO:0008152,GO:0008168 - - - Cre01.g054700 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g1207.t1,Cre01.g054700.t1.1 - - - - - - - - - Cre08.g384320 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 16 - - g9045.t1, g9045.t2 - - - - - - - - - Cre10.g462850 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - - - g11345.t1 PF02040 PTHR10283:SF21,PTHR10283 - - - GO:0015105,GO:0016021 - - - Cre14.g622075 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g14988.t1,Cre14.g622063.t1.2 - - - - - - - - - Cre06.g258800 CWP2,GP2 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 Hydroxyproline-rich glycoprotein component of the outer cell wall Extracellular matrix protein (cell wall protein) GP2; contains (hydroxy)proline-rich (HR) domains. Antibody against deglycosylated GP2 was used successfully to screen for a cDNA clone in a gt11 expression library [PMID: 1699225; M58497]. Independently seq g5819.t1,CWP2,GP2 - - - - - - - - - Cre18.g749247 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g18101.t1,Cre31.g780000.t1.1 - - - - - - - - - Cre02.g141426 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2712.t1 - - - - - - - - - Cre04.g233302 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 9 - - g5071.t1,Cre32.g780750.t1.1,Cre32.g780750.t1.2 PF07478,PF00856 PTHR23132 - - - GO:0008716,GO:0005515 AT5G53430.1 ATX5,SDG29,SET29 SET domain group 29 Cre06.g302850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 10 - - g7011.t1,Cre06.g302850.t1.1 - - - - - - AT2G15860.1 - - Cre07.g328450 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g7640.t1,Cre07.g328450.t1.1 PF09340 PTHR13476 - - - - AT4G14385.1 - - Cre01.g014200 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g346.t1,Cre01.g014200.t1.1 - - - - - - - - - Cre13.g583972 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g14337.t1 - - - - - - - - - Cre02.g073250 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1296.t1 PF07500 PTHR11477 - - - GO:0006351 AT5G25520.2 - SPOC domain / Transcription elongation factor S-II protein Cre09.g393700 MMP3 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 16 Matrix metalloproteinase Matrix metalloproteinase belonging to the M11 peptidase family. Homology to MMP1 and MMP2 g9415.t1,MMP3 PF05548 - - - - - - - - Cre17.g718700 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g17393.t1,Cre17.g718700.t1.1 - - - - - - - - - Cre07.g352550 RDP3 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 6 Putative rhodanese domain phosphatase Putative rhodanese domain phosphatase similar to CDC25; M-phase inducer phosphatase. Putative function in G2/M g8200.t1,Cre07.g352550.t1.1 PF00581 PTHR10828,PTHR10828:SF18 KOG1530 - - GO:0000087,GO:0004725,GO:0005622,GO:0006470 AT5G03455.1 ACR2,ARATH;CDC25,CDC25 Rhodanese/Cell cycle control phosphatase superfamily protein Cre17.g705300 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g17094.t1,Cre17.g705300.t1.1, g17094.t2 PF12499 - - - - - - - - Cre07.g313950 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g7265.t1 - - - - - - - - - Cre02.g106700 RAP1,OPR4 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 3 - - g2187.t1,RAP1 PF08373 - - - - - - - - Cre09.g394954 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g9796.t1,Cre02.g131350.t1.1 PF09335 - - - - - - - - Cre07.g341250 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 17 - - g7966.t1,Cre07.g341250.t1.1 - - - - - - - - - Cre07.g341251 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g7967.t1 PF00069 PTHR23257:SF325,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT4G31170.1 - Protein kinase superfamily protein Cre07.g336950 PHOA,PHO2 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 10 Starch phosphorylase Starch phosphorylase (EC 2.4.1.1); identical to PHOA gene of Chlamydomonas reinhardtii (GenBank ABB88569); Dauvillee et al. 2006 [PMID: 17018036]. Previously annotated as PHOA, but this conflicts with alkaline phosphatase series. Signal peptide looks mi g7840.t1,PHO2,PHOA PF00343 PTHR11468 KOG2099 - - GO:0004645,GO:0005975 AT3G46970.1 ATPHS2,PHS2 alpha-glucan phosphorylase 2 Cre16.g659850 CGL37 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Shikimate kinase-related protein Conserved protein related to shikimate kinase; def ATP binding / shikimate kinase - Arabidopsis gi|18403860|ref|NP_565805.1| g15939.t1,Cre16.g659850.t1.1 - - - - - - AT2G35500.1 SKL2 shikimate kinase like 2 Cre07.g335600 NAR1.4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 1 Formate nitrite transporter Formate nitrite transporter [NCBI Accession number AY612640] g7813.t1,Cre07.g335600.t1.1 PF01226 - - - - GO:0005215,GO:0006810,GO:0016020 - - - Cre09.g395399 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g9808.t1,Cre02.g131850.t1.1,Cre02.g131850.t1.2 - PTHR11584:SF274,PTHR11584 - - - - - - - Cre03.g189901 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g3932.t1 - - - - - - - - - Cre14.g633500 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 9 - - g15273.t1 PF07792 PTHR13677 KOG2432 - - - AT1G73930.1 - - Cre12.g534302 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g13141.t1,Cre12.g534302.t1.1 - - - - - - - - - Cre12.g534300 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g13140.t1 - - - - - - - - - Cre12.g549427 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 11 - - g13805.t2,Cre27.g774981.t2.1, g13805.t1,Cre27.g774981.t1.1,Cre27.g774981.t1.2 - - - - - - - - - Cre02.g143347 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g2827.t1,Cre38.g785150.t2.1, g2827.t2,Cre38.g785150.t1.1 - - - - - - - - - Cre10.g440300 SMC5A - 0 15 1.0 1.0 0 15 1.0 1.0 O n - 14 Structural Maintenance of Chromosomes protein Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation. This is one of two SMC5 models near each other on scaffold 10. g10838.t1,SMC5A - PTHR19306:SF1,PTHR19306 KOG0979 - - - AT5G15920.1 SMC5 structural maintenance of chromosomes 5 Cre10.g445150 EXN12 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 6 - - g10943.t1,EXN12 PF01612,PF04073 PTHR12124,PTHR12124:SF15 - - - GO:0003676,GO:0005622,GO:0006139,GO:0008408 AT1G56310.1 - Polynucleotidyl transferase, ribonuclease H-like superfamily protein Cre10.g437550 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 11 - - g10781.t1 - - - - - - - - - Cre03.g169800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g3496.t1,Cre03.g169800.t1.1 PF01026 PTHR10060 KOG3020 3.1.21.- K03424 GO:0016888 AT3G52390.1 - TatD related DNase Cre10.g443650 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 8 - - g10908.t1 PF11470 PTHR23153 - - - - - - - Cre07.g345400 FAP70 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g8037.t1,Cre07.g345400.t1.1 - PTHR23083,PTHR23083:SF73 - - - - - - - Cre08.g368050 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g8624.t1,Cre08.g368050.t1.1 PF01035 PTHR10815 - - - GO:0003824,GO:0006281 - - - Cre04.g224899 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4913.t1 - - - - - - - - - Cre06.g250550 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5611.t1,Cre06.g250550.t1.1 - - - - - - - - - Cre16.g668100 SMM48 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g16276.t1,Cre16.g668100.t1.1,SMM48 PF08242 PTHR22809 KOG2361 - - - AT1G54650.1 - Methyltransferase family protein Cre05.g231100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g5143.t1 PF00023 PTHR24198:SF302,PTHR24198 KOG4412 - - GO:0005515 AT3G04710.3 - ankyrin repeat family protein Cre07.g342750 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g7930.t1 PF01408 PTHR22604:SF49,PTHR22604 - - - GO:0016491 - - - Cre09.g401050 - 0 12 1.0 1.0 0 12 1.0 1.0 SP n - 13 - - g9245.t1 - - - - - - - - - Cre06.g301550 MFT18 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 - - g6977.t1,Cre06.g301550.t1.1,MFT18 PF07690 PTHR24003:SF275,PTHR24003 KOG1330 - - GO:0016021,GO:0055085 AT5G64500.1 - Major facilitator superfamily protein Cre09.g406000 BPL1 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 Biotin-acetyl-CoA-carboxylase ligase, biotin/lipoate A/B protein ligase Biotin-acetyl-CoA-carboxylase ligase, biotin/lipoate A/B protein ligase. Biotin--[propionyl-CoA-carboxylase [ATP-hydrolyzing]] ligase (Holocarboxylase synthetase) g10066.t1,BPL1 PF03099 PTHR12835 - - - GO:0004077,GO:0006464,GO:0003824 AT2G25710.1 HCS1 holocarboxylase synthase 1 Cre14.g609350 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 17 - - g14690.t1 PF00249 PTHR10641 - - - - AT5G11510.1 AtMYB3R4,MYB3R-4 myb domain protein 3r-4 Cre09.g395300 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 9 - - g9384.t1,Cre09.g395300.t1.1 PF01454 - - - - - - - - Cre06.g303950 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 9 - - g7038.t1,Cre06.g303950.t1.1 - - - - - - - - - Cre03.g144927 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g2910.t1 - - - - - - - - - Cre12.g533650 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 12 - - g13127.t1,Cre12.g533650.t1.1 PF03798 PTHR13439 KOG4561 - - GO:0016021 AT4G10360.1 - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein Cre12.g551852 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g13505.t1 PF01753 - - - - GO:0008270 - - - Cre12.g551850 NFR1 - 0 1 1.0 nan 0 1 1.0 nan O n - - NADH-dependent flavin reductase/cytochrome P450, CYP102 superfamily NADH-dependent flavin reductase/cytochrome P450, CYP102 superfamily. The human ortholog NR1 (genbank # AF199509) was shown to contain FMN FAD and NADPH cofactors [PMID: 10625700]. The C. elegans ortholog Fre1 (genbank # AY079165) was proposed to particip g13504.t1,Cre12.g551850.t1.1,NFR1 PF00667,PF00175,PF00258 PTHR19384,PTHR19384:SF10 KOG1158 - - GO:0016491,GO:0055114,GO:0010181 AT3G02280.1 - Flavodoxin family protein Cre06.g304450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g7048.t1,Cre06.g304450.t1.1 - - - - - - - - - Cre17.g740050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g17899.t1 PF10162 PTHR15535,PTHR15535:SF1 KOG3930 - - - - - - Cre12.g547650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g13600.t1,Cre12.g547650.t1.1 - - - - - - - - - Cre03.g184850 TPT8 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 - - g3831.t1,TPT8 PF03151,PF00892 PTHR11132,PTHR11132:SF14 KOG1441 - - GO:0016020 AT1G12500.1 - Nucleotide-sugar transporter family protein Cre03.g195550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g4052.t1,Cre03.g195550.t1.1 - - - - - - - - - Cre02.g100700 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g2052.t1 - - - - - - - - - Cre08.g381983 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g8988.t2,Cre08.g382000.t2.1, g8988.t1,Cre08.g382000.t1.3 - - - - - - - - - Cre19.g750747 - 0 1 1.0 nan 0 1 1.0 nan C n - - RAP-domain containing protein RAP-domain containing protein. The RNA-binding RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Previously annotated as CLR16 g18132.t1,Cre33.g782650.t1.1 PF08373 - - - - - - - - Cre12.g561000 CYN28 - 0 1 1.0 nan 0 1 1.0 nan C Y downregulated 8 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID:15047905]; similar to At5g35100 (AtCYP28); possibly directed to chloroplast thylakoid lumen g13298.t1 PF00160 PTHR11071:SF11,PTHR11071 KOG0880 - - GO:0003755,GO:0006457 AT5G35100.1 - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Cre04.g230144 SPT1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated 16 Component of serine palmitoyltransferase - g5038.t1,SPT1 PF00155 PTHR13693,PTHR13693:SF3 KOG1357 2.3.1.50 K00654 GO:0009058,GO:0016769,GO:0030170 AT5G23670.1 LCB2 long chain base2 Cre14.g617950 CAM18 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g14888.t1,CAM18 PF00036 PTHR23050:SF86,PTHR23050 KOG0030 - - - AT2G27030.3 ACAM-2,CAM5 calmodulin 5 Cre12.g535550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g13173.t1 PF08840 PTHR10992,PTHR10992:SF233 KOG4667 - K06889 - AT3G47560.1 - alpha/beta-Hydrolases superfamily protein Cre16.g675100 CPLD53 - 0 1 1.0 nan 0 1 1.0 nan M Y - 18 - - g16616.t1 PF06203 - - - - GO:0005515 AT3G02380.1 ATCOL2,COL2 CONSTANS-like 2 Cre10.g449100 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 - - g11041.t1,Cre10.g449100.t1.1 PF00153 PTHR24089:SF97,PTHR24089 KOG0754 - - - AT5G01340.1 - Mitochondrial substrate carrier family protein Cre16.g676450 CPLD39 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 9 Predicted protein Conserved expressed protein g16587.t1,Cre16.g676450.t1.1 - - - - - - AT2G43945.1 - - Cre02.g087850 PTK19 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n downregulated 15 Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g1634.t1,PTK19 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G38210.1 - Protein kinase family protein Cre08.g360300 SDR11 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g8437.t1,Cre08.g360300.t1.1,SDR11 PF00106 PTHR24316:SF98,PTHR24316 KOG1208 - - GO:0008152,GO:0016491 AT5G15940.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre01.g032300 GBP1 - 0 1 1.0 nan 0 1 1.0 nan O n - - G-strand telomere binding protein [PMID: 8062839] g731.t1,Cre01.g032300.t1.1,GBP1 PF00076 PTHR23003 KOG0105 - - GO:0003676 AT2G36660.1 PAB7 poly(A) binding protein 7 Cre10.g428100 TMG5 - 0 1 1.0 nan 0 1 1.0 nan O Y - 1 - - g10573.t1 PF02005 PTHR10631 - 2.1.1.32 K00555 GO:0003723,GO:0004809,GO:0008033 AT3G56330.1 - N2,N2-dimethylguanosine tRNA methyltransferase Cre05.g235900 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 16 - - g5423.t1 - - - - - - - - - Cre16.g671150 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g16296.t1,Cre16.g671150.t1.1 PF04884 PTHR12770 - - - - AT1G13770.1 RUS3 Protein of unknown function, DUF647 Cre12.g508200 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g12392.t1,Cre12.g508200.t1.1 - PTHR12581 KOG2874 - K06961 - AT5G08420.1 - RNA-binding KH domain-containing protein Cre13.g586916 SRS9,SCL27 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g14400.t1,Cre13.g586900.t1.3,SCL27,SRS9 PF00076 PTHR23147 KOG0126 - K12900 GO:0003676 AT5G18810.1 SCL28 SC35-like splicing factor 28 Cre17.g696950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 18 - - g16904.t1 PF00069 PTHR23257,PTHR23257:SF285 - - - GO:0004672,GO:0005524,GO:0006468 AT4G24480.1 - Protein kinase superfamily protein Cre03.g203100 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g4257.t1,Cre03.g203100.t1.1 - - - - - - - - - Cre03.g185100 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 8 - - g3836.t1 - PTHR13407 KOG1734 - - - - - - Cre01.g061807 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n upregulated 2 - - g1261.t1,Cre23.g766950.t1.1,Cre23.g766950.t1.2 PF01027 PTHR23291,PTHR23291:SF4 KOG1629 - - - AT5G47120.1 ATBI-1,ATBI1,BI-1,BI1 BAX inhibitor 1 Cre09.g398700 CPLD27,CFA2 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y upregulated 7 Cyclopropane-fatty-acyl-phospholipid synthase Cyclopropane-fatty-acyl-phospholipid synthase. Plant-lineage-and-diatoms conserved expressed protein related to putative coclaurine N-methyltransferase; this protein is found in the eyespot proteome. Previously annotated as CPLD27 g9302.t1,Cre09.g398700.t1.1,CFA2 PF02353 PTHR10108,PTHR10108:SF298 - - - GO:0008610 AT4G33110.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre12.g490600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g12173.t1,Cre12.g490600.t1.1 - - - - - - - - - Cre03.g202850 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 5 - - g4263.t1 - - - - - - - - - Cre03.g202851 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g4264.t1 - - - - - - - - - Cre02.g074250 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 2 - - g1318.t1 - - - - - - - - - Cre04.g215001 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g4672.t1, g4672.t2 - - - - - - - - - Cre02.g141850 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 - - g2654.t1 - - - - - - AT1G62250.1 - - Cre06.g278900 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6485.t1 PF10168 PTHR13257 - - - - AT5G05680.1 MOS7 nuclear pore complex protein-related Cre06.g299100 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g6919.t1,Cre06.g299100.t1.1 - - - - - - - - - Cre16.g672350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g16680.t1 - PTHR24015,PTHR24015:SF208 - - - - AT4G21070.1 ATBRCA1,BRCA1 breast cancer susceptibility1 Cre12.g536776 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g13200.t1 - - - - - - - - - Cre16.g679300 CGL139 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 4 - - g16524.t1,Cre16.g679300.t1.1 - - - - - - AT3G51510.1 - - Cre14.g626667 - 0 1 1.0 nan 0 1 1.0 nan M n - 2 - - g15093.t1 PF05347 - - - - - - - - Cre08.g367550 FAP291 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 11 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g8612.t1,Cre08.g367550.t1.1 - - - - - - - - - Cre10.g457000 CYN65 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID:15047905]; N-terminal domain contains modified RING Zinc-finger (U-box); no targeting peptide, probably cytosolic; similar to At5g67530 (AtCYP65) g11213.t1 PF04641,PF00160 PTHR11071,PTHR11071:SF88 KOG0883 5.2.1.8 K10598 GO:0003755,GO:0006457 AT5G67530.1 ATPUB49,PUB49 plant U-box 49 Cre16.g685650 GLR1 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 15 Ionotropic glutamate receptor Ionotropic glutamate receptor. Contains a short LSU-rRNA motif on the opposite strand (5162821-5162909), in intronic region g16383.t1,GLR1 PF00060,PF00497 PTHR18966:SF42,PTHR18966 - - - GO:0004970,GO:0005234,GO:0016020,GO:0005215,GO:0006810,GO:0030288 AT3G51480.1 ATGLR3.6,GLR3.6 glutamate receptor 3.6 Cre06.g259600 VPS53 - 0 1 1.0 nan 0 1 1.0 nan O n - - Subunit of GARP complex Expressed Protein. Similar to VPS53, a component of the GARP (Golgi-associated retrograde protein) complex g5836.t1,VPS53 PF04100 PTHR12820 KOG2180 - - - AT1G50500.1 ATVPS53,HIT1,VPS53 Membrane trafficking VPS53 family protein Cre13.g584200 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 11 - - g14342.t1,Cre13.g584200.t1.1 PF03595,PF00462 PTHR10168 KOG1752 - - GO:0016021,GO:0055085,GO:0009055,GO:0015035,GO:0045454 AT5G40370.1 - Glutaredoxin family protein Cre16.g680350 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 5 - - g16501.t1,Cre16.g680350.t1.1 - - - - - - - - - Cre06.g282700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 - - g6574.t1,Cre06.g282700.t1.1 - PTHR24414:SF193,PTHR24414 - - - - - - - Cre02.g103550 EIF1A - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Eukaryotic translation initiation factor 1A, eIF-1A Eukaryotic translation initiation factor 1A, eIF-1A. Also known as EIF4C g2116.t1,Cre02.g103550.t1.1 PF01176 PTHR21668 KOG3403 - K03236 GO:0003743,GO:0006413,GO:0003723 AT2G04520.1 - Nucleic acid-binding, OB-fold-like protein Cre12.g491952 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g12152.t1, g12152.t2 PF01822 - KOG3454 - - - - - - Cre04.g218200 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated - - - g4756.t1 - - - - - - - - - Cre08.g382150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g8991.t1 - - - - - - - - - Cre12.g492600 FAS3 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 4 Fasciclin-like protein Similar to fasciclin/TGFbeta-induced protein/Volvox CAM (algal-CAM) [PMID: 7925267]; contains 3 (!) FAS1 (BIgH3) domains, involved in cell recognition; probably extracellular, GPI-anchored (by homology) g12098.t1,Cre12.g492600.t1.1,FAS3 PF02469 PTHR10900:SF53,PTHR10900 - - - - - - - Cre01.g037476 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g840.t1 - - - - - - - - - Cre17.g709651 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g17188.t1,Cre17.g709650.t1.3 PF00415 PTHR22870 - - - - AT5G63860.1 UVR8 Regulator of chromosome condensation (RCC1) family protein Cre12.g516750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 13 - - g12746.t2, g12746.t1 PF07714 PTHR23257:SF353,PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT5G03730.1 AtCTR1,CTR1,SIS1 Protein kinase superfamily protein Cre05.g240750 TEF17 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - Predicted protein Protein with unknown function, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018] g5552.t1,Cre05.g240750.t1.1,TEF17 - PTHR10552 - - - - - - - Cre17.g739250 - 0 12 1.0 1.0 0 12 1.0 1.0 C n - 14 - - g17878.t1 PF01590,PF07714 PTHR23257 KOG0192 - - GO:0005515,GO:0004672,GO:0006468 AT1G16270.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre12.g485750 CGL128 - 0 1 1.0 nan 0 1 1.0 nan O Y - 10 - - g12282.t1 - PTHR13420 KOG3276 - K09131 - AT5G63440.2 - Protein of unknown function (DUF167) Cre02.g147450 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n upregulated 5 - - g2512.t1 - PTHR18640:SF1,PTHR18640 - - K14347 - AT3G56160.1 - Sodium Bile acid symporter family Cre12.g484400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g12024.t1 - - - - - - - - - Cre02.g146500 DYRK1,DSK1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 Dual-specificity tyrosine regulated protein kinase Dual-Specificity Tyrosine-Phosphorylation Regulated Protein Kinase 1. Previously annotated as DYRK1 g2531.t1,DSK1,DYRK1 PF00069 PTHR24058:SF131,PTHR24058 KOG0667 2.7.12.1 K08825 GO:0004672,GO:0005524,GO:0006468 AT5G35980.1 YAK1 yeast YAK1-related gene 1 Cre02.g107700 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g2208.t1 PF00560,PF00646 PTHR23155 KOG0531 - - GO:0005515 AT2G19330.1 PIRL6 plant intracellular ras group-related LRR 6 Cre14.g620450 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g14953.t1 - - - - - - - - - Cre16.g673553 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g16651.t1 PF00561 PTHR24782,PTHR24782:SF31 - - - - AT3G48410.1 - alpha/beta-Hydrolases superfamily protein Cre06.g258550 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g5812.t1 - - - - - - - - - Cre04.g224400 - 0 14 1.0 1.0 0 14 1.0 1.0 M n downregulated 9 - - g4895.t1 PF01061,PF08370,PF00005 PTHR19241,PTHR19241:SF10 KOG0065 - - GO:0016020,GO:0005524,GO:0016887 AT1G15210.1 ATPDR7,PDR7 pleiotropic drug resistance 7 Cre06.g270250 CDC45 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 Cell Division Cycle protein Homolog of fungal and metazoan CDC45 g6063.t1,CDC45 PF02724 PTHR10507 KOG2475 - K06628 GO:0006270 AT3G25100.1 CDC45 cell division cycle 45 Cre05.g234350 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g5086.t1 - - - - - - - - - Cre09.g394547 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 5 - - g9785.t1,Cre02.g130800.t1.1 PF00686 - - - - GO:0003824,GO:0005975 AT5G01260.2 - Carbohydrate-binding-like fold Cre12.g522550 KIN2-1,FLA8 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 Kinesin motor protein, kinesin-2 (KRP85/95) family Kinesin motor protein, kinesin-2 (KRP85/95) family. Anterograde motor for intraflagellar transport. Previously annotated as FLA8. Upregulated upon deflagellation g12868.t1,Cre12.g522550.t1.1,FLA8,KIN2-1 PF00225 PTHR24115,PTHR24115:SF161 KOG4280 - - GO:0003777,GO:0005524,GO:0007018 AT2G28620.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre16.g692250 BLZ13 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g15633.t1,BLZ13 PF00170 - - - - GO:0003700,GO:0006355,GO:0043565,GO:0046983 - - - Cre10.g437050 ATP11 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 Assembly factor 1 for F1 component of mitochondrial ATP synthase Putative assembly factor 1 for the F1 component of the mitochondrial ATP synthase complex; homolog of yeast protein ATP11 (named ATPAF1 in mammals) [PMID: 1532796; PMID: 11410595]. N-terminal mitochondrial targeting sequence predicted by TargetP. g10771.t1,Cre10.g437050.t1.1,ATP11 PF06644 PTHR13126 - - K07555 GO:0005739,GO:0006461 AT2G34050.1 - - Cre01.g010848 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g271.t1 PF01168 PTHR10146 KOG3157 - K06997 - AT1G11930.2 - Predicted pyridoxal phosphate-dependent enzyme, YBL036C type Cre12.g535300 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g13167.t1 - - - - - - - - - Cre06.g262950 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 - - g5906.t1 - PTHR14187:SF32,PTHR14187 - - - - - - - Cre06.g287550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g6679.t1 - - KOG4817 - - - - - - Cre03.g160650 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g3291.t1,Cre03.g160650.t1.1, g3291.t2 - - - - - - - - - Cre12.g508550 PAN2,PANB1,PANB - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 3-methyl-2-oxobutanoate hydroxymethyltransferase 3-methyl-2-oxobutanoate hydroxymethyltransferase/ketopantoate hydroxymethyltransferase (KPHMT). Previously annotated as PANB g12384.t1,PAN2,PANB PF02548 PTHR20881 KOG2949 2.1.2.11 K00606 GO:0003864,GO:0015940 AT3G61530.1 PANB2 Phosphoenolpyruvate carboxylase family protein Cre02.g074720 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 17 - - g1333.t1 - - - - - - - - - Cre01.g008700 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 14 - - g219.t1,Cre01.g008700.t1.1 - - - - - - - - - Cre12.g509600 CDD2 - 0 1 1.0 nan 0 1 1.0 nan SP n - 1 - - g12359.t1,CDD2 PF00383 PTHR11079 - - - GO:0008270,GO:0016787 AT1G48175.1 emb2191 Cytidine/deoxycytidylate deaminase family protein Cre06.g260550 CYG1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 3 Adenylate/guanylate cyclase C terminal domain similar to guanylate cyclase 1 from Homo sapiens g5855.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre01.g027050 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g619.t1 PF11527 - - - - - - - - Cre05.g235750 MSH6 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 10 DNA mismatch repair protein, MutS homolog DNA mismatch repair protein, MutS homolog. Forms a complex with MutL (see MLH genes). Reviewed by Vlcek et al. 2008 [PMID:17992532] as protein ID 120228, homolog of yeast and human MSH6. Acclimation to changing CO2 concentrations and light intensities g5420.t1,Cre05.g235750.t1.1,MSH6 PF01624,PF00488,PF05192,PF05188 PTHR11361:SF31,PTHR11361 - - K08737 GO:0005524,GO:0006298,GO:0030983 AT4G02070.1 ATMSH6,MSH6,MSH6-1 MUTS homolog 6 Cre14.g631575 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g15221.t1,Cre14.g631575.t1.1 - - - - - - - - - Cre09.g414250 GTR20 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 Glycosyltransferase, type ALG6, ALG8 - g10259.t1,GTR20 PF03155 PTHR12413 KOG2576 2.4.1.- K03849 GO:0005789,GO:0016758 AT2G44660.1 - ALG6, ALG8 glycosyltransferase family Cre06.g288700 GYD1 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - Glycolate dehydrogenase Glycolate dehydrogenase, converting glycolate to glyoxylate; Identical to GDH cDNA sequence [GenBank ABG36932; Nakamura et al. (2005) Canadian Journal of Botany 83:820-833]; mitochondrial targeting (Target-P) g6700.t1,Cre06.g288700.t1.1,GYD1 PF01565,PF02913 PTHR11748:SF5,PTHR11748 KOG1232 - - GO:0016491,GO:0050660,GO:0003824 AT4G36400.1 - FAD-linked oxidases family protein Cre08.g370250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g8677.t1, g8677.t2,Cre08.g370250.t1.1 - - - - - - AT3G12010.1 - - Cre04.g221050 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - - - - g4825.t1,Cre04.g221050.t1.1 PF07059 - - - - - AT5G45560.1 - Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein Cre14.g632900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g15260.t1,Cre14.g632900.t1.1 - - - - - - - - - Cre01.g028550 OTU1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g652.t1,Cre01.g028550.t1.1,OTU1 PF02338 PTHR12419 KOG2606 - - - AT3G62940.2 - Cysteine proteinases superfamily protein Cre12.g523600 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 10 - - g12893.t1 PF12359,PF12340 - - - - - - - - Cre08.g383050 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g9019.t1 - PTHR14515 - - K13706 - AT4G24140.1 - alpha/beta-Hydrolases superfamily protein Cre02.g079650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g1455.t1 PF00892 PTHR22911:SF6,PTHR22911 KOG4510 - - GO:0016020 - - - Cre01.g013300 DEG10 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - DegP-type protease Serine protease, trypsin family, DegP type (HtrA) (protease Do) most similar to plant-type DegPs (2,3,4,9,10,11,12,13) [PMID: 11299370, PMID: 12185496]; one PDZ domain, probably involved in substrate recognition and protease activation [PMID: 15137941]; p g326.t1 PF00089 PTHR22939,PTHR22939:SF1 KOG1320 - - GO:0004252,GO:0006508 AT5G36950.1 DegP10 DegP protease 10 Cre01.g050150 NFO1 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 8 - - g1109.t1,NFO1 PF00724 PTHR22893,PTHR22893:SF7 KOG0134 - - GO:0010181,GO:0016491 AT1G09400.1 - FMN-linked oxidoreductases superfamily protein Cre13.g573950 ZRT3 - 0 1 1.0 nan 0 1 1.0 nan SP n - - Zinc-nutrition responsive transporter Related to Zinc transporter. Appears as CrZIP3 in PMID: 15710683; PMID: 16766055 g14109.t1 PF02535 PTHR11040 - - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 AT1G05300.1 ZIP5 zinc transporter 5 precursor Cre17.g736400 SCC3 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 10 - - g17812.t1,SCC3 PF08514 PTHR11199 - - K13055 - AT2G47980.1 ATSCC3,SCC3 sister-chromatid cohesion protein 3 Cre06.g263600 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 18 - - g5922.t1 - - - - - - - - - Cre06.g263602 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g5923.t1,Cre06.g263602.t1.1 PF04757 PTHR12888 KOG0826 - K13345 GO:0005778,GO:0007031 AT3G04460.1 APM4,ATPEX12,PEX12 peroxin-12 Cre16.g680950 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated - - - g16488.t1 - - - - - - - - - Cre02.g080850 CYN47,CYN11 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g1478.t1,Cre02.g080850.t1.1,CYN11 PF01549 - - - - - AT4G17070.1 - peptidyl-prolyl cis-trans isomerases Cre06.g290450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g6737.t1,Cre06.g290450.t1.1 PF00076 PTHR24012:SF256,PTHR24012 KOG0144 - K13207 GO:0003676 AT4G03110.1 AtRBP-DR1,RBP-DR1 RNA-binding protein-defense related 1 Cre14.g628100 SPL7 - 0 1 1.0 nan 0 1 1.0 nan O n - - Putative hnRNP splicing factor Putative hnRNP splicing factor, similar to hnRNP-F g15131.t1,Cre14.g628100.t1.1,SPL7 PF00076 PTHR13976 KOG4211 - - GO:0003676 AT3G20890.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre16.g687742 - 0 1 1.0 nan 0 1 1.0 nan SP n - 3 - - g16842.t1,Cre01.g071100.t1.1 PF02469 - - - - - - - - Cre02.g113809 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2349.t1,Cre02.g113809.t1.1 PF00651 - - - - GO:0005515 - - - Cre09.g389200 UMM8 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 - - g9514.t1,UMM8 PF08241 PTHR10108,PTHR10108:SF327 - - - GO:0008152,GO:0008168 - - - Cre02.g090400 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 1 - - g1688.t1,Cre02.g090400.t1.1 - - - - - - - - - Cre09.g389208 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 - - g9635.t1,Cre02.g124150.t1.1,Cre02.g124150.t1.2 PF04117 PTHR11266 KOG1944 - - GO:0016021 AT3G24570.1 - Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Cre03.g208100 RNB1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 3\'-5\' exoribonuclease Putative RNase B family protein,3\'-5\' exoribonuclease, dis3-like, RNB, ribonuclease II;gi|10793702|gb|AV631068.1|AV631068 g4146.t1,RNB1 PF00773 PTHR23355,PTHR23355:SF10 KOG2102 - - GO:0003723,GO:0004540 AT1G77680.1 - Ribonuclease II/R family protein Cre12.g543301 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 16 - - g13704.t1,Cre12.g543258.t1.2 - - - - - - - - - Cre12.g543303 CGLD6,CGLD20 - 0 1 1.0 nan 0 1 1.0 nan O Y upregulated - - - g13706.t1,Cre12.g543150.t2.1,CGLD20, g13706.t3,Cre12.g543150.t3.1,CGLD20, g13706.t2,Cre12.g543150.t1.3,CGLD20 PF08783, PF00098,PF08783 PTHR15439 KOG0106 - - GO:0003676,GO:0008270,GO:0005634, GO:0005634,GO:0008270 AT5G47430.3 - DWNN domain, a CCHC-type zinc finger Cre16.g683793 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g16153.t1,Cre01.g064550.t1.1,Cre01.g064550.t1.2 PF00533,PF06732 PTHR12221 - - - GO:0005622,GO:0005730,GO:0008283 AT5G14520.1 - pescadillo-related Cre12.g545950 MAPKKK9 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n downregulated 13 Mitogen-Activated Protein Kinase Kinase Kinase MAP3K9 g13636.t1,MAPKKK9 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre16.g690250 PUS18 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 14 - - g16202.t1,Cre16.g690250.t1.1,PUS18 PF01509 PTHR13767 - 5.4.99.12 K03177 GO:0006396,GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT5G14460.1 - Pseudouridine synthase family protein Cre03.g187976 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g3893.t1 - - - - - - - - - Cre10.g431450 NAT24 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 12 - - g10651.t1,NAT24 PF00583 PTHR20531 KOG2488 2.3.1.- K00680 GO:0008080,GO:0008152 AT1G18335.1 - Acyl-CoA N-acyltransferases (NAT) superfamily protein Cre02.g099000 SYP71 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 14 Late endosomal Qc-SNARE protein, Syx6/Tlg1/Syp5/6-family (Qc.III.b) Late endosomal Qc-SNARE protein, Syx6/Tlg1/Syp5/6-family (Qc.III.b). Expressed Protein. Involved in endosomal/cell plate trafficking; part of 2-member gene family of tandemly repeated genes (<-71 <-72). Class Qc.III.b SNARE, targeted to late endosomes g2013.t1,Cre02.g099000.t1.1 PF05739 PTHR12380 KOG3202 - K08506 GO:0005515 AT3G09740.1 ATSYP71,SYP71 syntaxin of plants 71 Cre02.g077401 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - - - - g1395.t1,Cre02.g077400.t1.3 - - - - - - - - - Cre02.g141626 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g2723.t1,Cre15.g647400.t1.1,Cre15.g647400.t1.2 - PTHR11006,PTHR11006:SF4 - - - - AT4G16570.1 ATPRMT7,PRMT7 protein arginine methyltransferase 7 Cre01.g022700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g525.t1 - - - - - - - - - Cre12.g553950 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 10 - - g13454.t1 - - - - - - - - - Cre06.g296100 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g6849.t1,Cre06.g296100.t1.1 PF01663 - - - - GO:0003824 - - - Cre06.g248900 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g5575.t1 PF00560 PTHR23155 KOG4579 - - GO:0005515 AT3G26500.1 PIRL2 plant intracellular ras group-related LRR 2 Cre03.g157200 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 17 - - g3209.t1 PF00069 PTHR23257:SF354,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre14.g627100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g15101.t1,Cre14.g627100.t1.1 PF00023 - - - - GO:0005515 - - - Cre06.g295450 HPR1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 6 Hydroxypyruvate reductase Putative hydroxypyruvate reductase, catalyzing the NADH-dependent conversion of hydroxypyruvate to glycerate; contains sequence nearly identical to Chlamydomonas HPR (GenBank AAW29979); predicted by Target-P to be organelle targeted; PMID: 19214701 g6839.t1,Cre06.g295450.t1.1,HPR1 PF02826,PF00389 PTHR10996,PTHR10996:SF22 KOG0069 - - GO:0016616,GO:0048037,GO:0008152,GO:0051287 AT1G68010.1 ATHPR1,HPR hydroxypyruvate reductase Cre03.g204900 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 9 - - g4215.t1 PF02631 - - - - GO:0006282 AT3G13226.1 - regulatory protein RecX family protein Cre17.g739400 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g17881.t1,Cre17.g739400.t1.1 - - - - - - - - - Cre10.g435200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated - - - g10734.t1,Cre10.g435200.t1.1 - - - - - - - - - Cre04.g222650 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 1 - - g4858.t1 - - - - - - - - - Cre15.g637700 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 7 - - g15378.t1,Cre15.g637700.t1.1 - - - - - - - - - Cre09.g407300 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 8 - - g10098.t1 PF00561 PTHR10992 KOG1454 - - - AT3G10840.1 - alpha/beta-Hydrolases superfamily protein Cre07.g320550 FAE4 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 4 - - g7412.t1,Cre07.g320550.t1.1,FAE4 PF02797,PF08392 - - - - GO:0008415,GO:0006633,GO:0016020,GO:0016747 AT1G01120.1 KCS1 3-ketoacyl-CoA synthase 1 Cre10.g452200 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g11108.t1 - - KOG0107 - - - AT5G16780.1 DOT2,MDF SART-1 family Cre01.g012550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g311.t1 - - - - - - - - - Cre01.g045400 TNP7 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g1015.t3,TNP7, g1015.t1,TNP7, g1015.t2,TNP7 PF07282 PTHR23257,PTHR23257:SF99 - - - - - - - Cre07.g330750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g7696.t1 PF12499 - - - - - - - - Cre10.g446850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g10992.t1 PF02373 PTHR12549:SF1,PTHR12549 - - - - AT1G62310.1 - transcription factor jumonji (jmjC) domain-containing protein Cre14.g617300 PSL3 - 0 1 1.0 nan 0 1 1.0 nan C n - - Signal peptide peptidase-like protein Contains YD and GxGD motifs typical of typical of A22 family aspartic proteases, presenilins/signal peptide peptidases; belongs to SPP type, cleaving only type II transmembrane helices (C-terminus towards cytosol); probably involved in clearance of signal g14874.t1,Cre14.g617300.t1.1,PSL3 PF04258 PTHR12174,PTHR12174:SF23 KOG2443 - - GO:0004190,GO:0016021 AT2G03120.1 ATSPP,SPP signal peptide peptidase Cre13.g580750 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g14265.t1 PF00097 PTHR22763 - - - - AT5G20910.1 AIP2 RING/U-box superfamily protein Cre10.g436150 COA6 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g10754.t1,COA6 PF01121 PTHR10695 KOG3220 2.7.1.24 K00859 GO:0004140,GO:0005524,GO:0015937 AT2G27490.1 ATCOAE dephospho-CoA kinase family Cre12.g549050 STR1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 Strictosidine synthase Homologue of plant, animal and bacterial strictosidine synthases [PMID: 10777701], which converts tryptamine and secaloganin into strictosidine, the precursor of monoterpenoid indole alkaloids g13567.t1,Cre12.g549050.t1.1,STR1, g13567.t2,STR1 PF03088 PTHR10426:SF18,PTHR10426 KOG1520 - - GO:0009058,GO:0016844 AT3G57030.1 - Calcium-dependent phosphotriesterase superfamily protein Cre02.g094400 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g1784.t1,Cre02.g094400.t1.1 - - - - - - - - - Cre07.g317250 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 6 - - g7333.t1 PF01607,PF00704,PF03067 PTHR11177,PTHR11177:SF84 - 3.2.1.14 K01183 GO:0005576,GO:0006030,GO:0008061,GO:0004553,GO:0005975,GO:0019028 AT4G19810.1 - Glycosyl hydrolase family protein with chitinase insertion domain Cre02.g098750 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 17 - - g2008.t1 PF00520,PF00027 PTHR10217:SF393,PTHR10217 KOG0498 - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT3G02850.1 SKOR STELAR K+ outward rectifier Cre02.g075000 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g1341.t4, g1341.t5, g1341.t1, g1341.t2, g1341.t3 PF04749 PTHR15907,PTHR15907:SF14 - - - - AT1G49030.1 - PLAC8 family protein Cre06.g291350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g6752.t1 - - - - - - AT5G65770.2 LINC4 little nuclei4 Cre01.g029700 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 12 - - g675.t1,Cre01.g029700.t1.1 - - - - - - - - - Cre16.g651700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 7 - - g15763.t1 - - - - - - - - - Cre16.g681238 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 - - g16784.t1,Cre01.g068600.t1.1 PF01926,PF10396 PTHR11649,PTHR11649:SF28 KOG1191 - K03650 GO:0005525,GO:0005622 AT1G78010.1 - tRNA modification GTPase, putative Cre02.g077750 FAP211 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g1402.t1,Cre02.g077750.t1.1 - - - - - - - - - Cre12.g560300 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g13313.t3,Cre12.g560300.t1.1, g13313.t1, g13313.t2 PF00076 PTHR24012:SF14,PTHR24012 KOG4205 - K14411 GO:0003676 AT3G07810.2 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre17.g732400 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g17699.t1 - - - - - - - - - Cre04.g220200 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g4803.t3, g4803.t2,Cre04.g220200.t1.1, g4803.t1 PF02254,PF00999 PTHR16254 KOG1003 - - GO:0006813,GO:0006812,GO:0015299,GO:0016021,GO:0055085 AT4G00630.1 ATKEA2,KEA2 K+ efflux antiporter 2 Cre12.g554250 LPB1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 6 Low Photochemical Bleaching protein Low Photochemical Bleaching 1 protein, required for survival in Pi-deficiency. Contains a domain similar to nucleotide-diphospho-sugar transferases. PMID:15849300 g13448.t1 - - - - - - AT3G56040.1 UGP3 UDP-glucose pyrophosphorylase 3 Cre12.g524400 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g12911.t1,Cre12.g524400.t1.1 PF02209 PTHR25093,PTHR25093:SF7 - - - GO:0003779,GO:0007010 AT3G57410.1 ATVLN3,VLN3 villin 3 Cre03.g189250 RAB11,RABA1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Small Rab-related GTPase Expressed Protein. Similar to the RabA/Rab11 type GTPase, involved in vesicle trafficking in the Golgi Endosomal system. Identical to YPTC6 [gi|3025293|sp|Q39572|YPT6_CHLRE]. Previously annotated as RABA1 g3919.t1,Cre03.g189250.t1.1,RAB11,RABA1 PF00071 PTHR24073,PTHR24073:SF213 KOG0087 - K07976 - AT1G09630.1 ATRAB-A2A,ATRAB11C,ATRABA2A,RAB-A2A,RAB11c RAB GTPase 11C Cre01.g043800 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 12 - - g979.t1 - - - - - - - - - Cre17.g728200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g17602.t1 PF05764,PF08265 PTHR13275 KOG2897 - - GO:0003677,GO:0003700,GO:0005634,GO:0006355 AT2G36740.1 ATSWC2,SWC2 sequence-specific DNA binding transcription factors;DNA binding;DNA binding Cre01.g041400 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 15 - - g926.t1 - - - - - - - - - Cre14.g613100 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 11 - - g14774.t1 - - - - - - - - - Cre09.g402478 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 15 - - g10019.t1,Cre02.g140250.t1.1 PF00069,PF07714 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT4G35780.1 - ACT-like protein tyrosine kinase family protein Cre13.g585800 SUB2 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 16 Secreted serine protease, subtilase-type Contains a protease S8 (subtilisine, kexin) domain; most similar to secreted bacterial proteases g14377.t1,Cre13.g585800.t1.1,SUB2 PF00082 PTHR10795,PTHR10795:SF157 - - - GO:0004252,GO:0006508 AT4G21650.1 - Subtilase family protein Cre14.g616550 CYG50 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 4 Adenylate/guanylate cyclase Domain similar to guanylyl cyclase long variant [Drosophila melanogaster]. Rhodopsin-like g14853.t1 PF00211,PF03924 PTHR11920:SF113,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre09.g399000 SDR18 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g9296.t1,SDR18 PF00106 PTHR24322 KOG0725 1.-.-.- K00540 GO:0008152,GO:0016491 AT1G54870.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre16.g684043 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 8 - - g16809.t1,Cre01.g069750.t1.1 PF00171 PTHR11699:SF84,PTHR11699 KOG2450 - - GO:0008152,GO:0016491,GO:0055114 AT1G23800.1 ALDH2B,ALDH2B7 aldehyde dehydrogenase 2B7 Cre08.g384700 DMA3 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g9053.t1,DMA3 PF06325 PTHR23290 KOG3420 - - GO:0005737,GO:0006479,GO:0008276 AT4G28830.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre02.g145628 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 6 - - g2550.t1,Cre02.g145628.t1.1 - - - - - - - - - Cre13.g564000 GPM3,PGM3 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 4 Phosphoglycerate mutase - g13878.t1,Cre13.g564000.t1.1,PGM3 PF00300 PTHR23029 KOG0235 - - - AT4G38370.1 - Phosphoglycerate mutase family protein Cre01.g001664 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g38.t1,Cre58.g791600.t1.1,Cre58.g791600.t1.2 - - - - - - - - - Cre04.g216875 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g4513.t1,Cre04.g216900.t1.2 - PTHR22847,PTHR22847:SF145 - - - - - - - Cre13.g583325 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g14322.t1 - - - - - - - - - Cre10.g461900 AKR8 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 4 - - g11324.t1,Cre10.g461900.t1.1,AKR8 PF00248 PTHR11732:SF15,PTHR11732 KOG1575 - - GO:0016491,GO:0055114 AT1G04420.1 - NAD(P)-linked oxidoreductase superfamily protein Cre03.g187150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3877.t1 - - - - - - - - - Cre07.g336750 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 16 - - g7836.t1 - - KOG0978 - - - - - - Cre06.g251951 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g5642.t1,Cre06.g251950.t1.3 PF00400 PTHR22836 KOG0284 - - - AT5G13480.1 FY Transducin/WD40 repeat-like superfamily protein Cre04.g221600 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 6 - - g4836.t1,Cre04.g221600.t1.1 - - - - - - - - - Cre01.g025700 - 0 10 1.0 1.0 0 10 1.0 1.0 M n - 17 - - g589.t1 PF01547 PTHR11017 - - - GO:0005215,GO:0006810 - - - Cre08.g378750 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g8915.t1 - - - - - - - - - Cre08.g365200 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g8550.t1,Cre08.g365200.t1.1 - - - - - - - - - Cre16.g673950 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g16643.t1,Cre16.g673950.t1.1 - - - - - - - - - Cre08.g379400 - 0 7 1.0 1.0 0 7 1.0 1.0 M n upregulated 16 - - g8932.t1 - - - - - - - - - Cre10.g431200 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g10647.t1,Cre10.g431200.t1.1 - - - - - - - - - Cre09.g411600 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g10190.t1 PF00249 PTHR10641,PTHR10641:SF30 - - - - AT5G11510.1 AtMYB3R4,MYB3R-4 myb domain protein 3r-4 Cre16.g667451 TLP3 - 0 13 1.0 1.0 0 13 1.0 1.0 C n - 15 - - g16309.t1,TLP3 PF00520 PTHR10037:SF138,PTHR10037 - - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G03560.1 ATCCH1,ATTPC1,FOU2,TPC1 two-pore channel 1 Cre16.g667450 TLP2 - 0 27 1.0 1.0 0 27 1.0 1.0 O n - 17 Tubby-like protein Tubby-like protein 2. Transcript upregulated during flagellar regeneration [PMID: 15738400]. g16308.t1,Cre16.g667450.t1.1 PF01167 PTHR16517,PTHR16517:SF19 KOG2502 - - - AT1G25280.1 AtTLP10,TLP10 tubby like protein 10 Cre01.g022950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g530.t1,Cre01.g022950.t1.1 PF00651 PTHR24413 - - - GO:0005515 AT3G17380.1 - TRAF-like family protein Cre06.g255700 - 0 6 1.0 1.0 0 6 1.0 1.0 M n upregulated 10 - - g5747.t1 - - - - - - - - - Cre04.g230438 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 18 Serine/threonine protein kinase Serine/threonine protein kinase. Previously annotated as SRR25 g5041.t1,Cre32.g782050.t1.1,Cre32.g782050.t1.2 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G14000.1 VIK VH1-interacting kinase Cre14.g620100 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g14943.t1,Cre14.g620100.t1.1 - - - - - - - - - Cre09.g398350 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 8 - - g9314.t1,Cre09.g398350.t1.1 PF04564,PF10408 PTHR13931,PTHR13931:SF8 KOG2042 6.3.2.19 K10597 GO:0000151,GO:0004842,GO:0016567,GO:0006511,GO:0034450 AT5G15400.1 - U-box domain-containing protein Cre12.g504350 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g12481.t1,Cre12.g504350.t1.1 PF12146 PTHR11614,PTHR11614:SF26 KOG1455 - - - AT2G39420.1 - alpha/beta-Hydrolases superfamily protein Cre10.g444400 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 18 - - g10927.t1 - PTHR13371 - - - - - - - Cre06.g307700 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g7125.t1 - - - - - - - - - Cre10.g438000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g10790.t1 - - - - - - - - - Cre03.g165700 PDC3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 Pyruvate decarboxylase Pyruvate decarboxylase [EC 4.1.1.1]; requires thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. Homologous with the alpha subunit of the E1 component of the mitochondrial pyruvate dehydrogenase complex (mtPDC) that catalyzes the oxidative decarbox g3400.t1,PDC3 PF02775,PF02776,PF00205 PTHR18968:SF4,PTHR18968 KOG1184 4.1.1.1 K01568 GO:0003824,GO:0030976,GO:0000287 AT5G54960.1 PDC2 pyruvate decarboxylase-2 Cre10.g425800 ORN1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 Mitochondrial oligoribonuclease Mitochondrial oligoribonuclease. Putative homolog of bacterial oligoribonuclease (Orn) g10523.t1,Cre10.g425800.t1.1,ORN1 PF00929 PTHR11046 KOG3242 3.1.-.- K13288 - AT2G26970.1 - Polynucleotidyl transferase, ribonuclease H-like superfamily protein Cre09.g388615 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g9618.t1,Cre02.g123400.t1.1 PF03463,PF03465,PF03464 PTHR10853 KOG2869 - K06965 GO:0006412 AT4G27650.1 PEL1 Eukaryotic release factor 1 (eRF1) family protein Cre16.g655700 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g15851.t1 - - - - - - - - - Cre13.g582050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g14291.t1,Cre13.g582050.t1.1 - - - - - - - - - Cre07.g335226 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 15 - - g7805.t1 - - - - - - - - - Cre02.g110600 DEG5 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - DegP-type protease Serine protease, trypsin family, DegP type (HtrA) (protease Do) most similar to At4g18370 (DegP5) and DegP1 [PMID: 11299370, PMID: 12185496]; has a single PDZ domain; probably localized to chloroplast (thylakoid lumen) g2270.t1,Cre02.g110600.t1.1 - PTHR22939:SF21,PTHR22939 - - - - AT4G18370.1 DEG5,DEGP5,HHOA DEGP protease 5 Cre15.g639050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g15430.t1 PF01753 PTHR13244 - - - GO:0008270 - - - Cre09.g388800 GDH1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 12 Glutamate dehydrogenase Glutamate dehydrogenase (EC 1.4.1.2); predicted by Target-P and iPSORT to be mitochondrial g9524.t1,Cre09.g388800.t1.1,GDH1 PF02812,PF00208 PTHR11606 - - - GO:0006520,GO:0016491,GO:0055114 AT5G07440.1 GDH2 glutamate dehydrogenase 2 Cre09.g388801 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 11 - - g9624.t1,Cre02.g123700.t1.1 - - - - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre06.g267150 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g5995.t1,Cre06.g267150.t1.1 PF03029 PTHR21231,PTHR21231:SF1 KOG1532 - K06883 GO:0000166 AT4G21800.1 QQT2 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre18.g748097 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g18078.t1,Cre31.g779550.t1.1,Cre31.g779550.t1.2 - - - - - - - - - Cre17.g741700 KIL22 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g17939.t1,KIL22 PF00225 PTHR24115,PTHR24115:SF314 KOG0978 - - GO:0003777,GO:0005524,GO:0007018 AT4G27180.1 ATK2,KATB kinesin 2 Cre14.g618100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g14891.t1 - - - - - - - - - Cre02.g101050 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 10 - - g2062.t1 - - - - - - - - - Cre19.g751147 - 0 1 1.0 nan 0 1 1.0 nan M n - - Serine/threonine kinase Serine/threonine kinase. Previously annotated as MOT46, a gene model that fuses this model with Au9.Cre33.g782100; MOT46 was dentified by comparative genomics as being present only in organisms having motile (MOT) cilia g18142.t2, g18142.t3, g18142.t1, g18142.t6, g18142.t4, g18142.t5 PF07714 PTHR23257, PTHR23257,PTHR23257:SF99, PTHR26391:SF248,PTHR26391 KOG1164 - - GO:0004672,GO:0006468 AT2G31010.1, AT4G21410.1, AT4G35780.1, AT5G03730.1 CRK29, AtCTR1,CTR1,SIS1 cysteine-rich RLK (RECEPTOR-like protein kinase) 29, Protein kinase superfamily protein, ACT-like protein tyrosine kinase family protein Cre14.g626466 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 17 - - g15087.t1,Cre14.g626450.t1.2 PF00069 PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre16.g677250 TEH5 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g16570.t1,Cre16.g677250.t1.1,TEH5 PF03061 PTHR12418:SF4,PTHR12418 KOG3328 - - - - - - Cre03.g194000 SPL14 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g4015.t1,SPL14 PF11708 PTHR12942 KOG2560 - K12819 - AT1G65660.1 SMP1 Pre-mRNA splicing Prp18-interacting factor Cre09.g386167 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g9096.t1,Cre29.g777950.t1.1,Cre29.g777950.t1.2 - - - - - - - - - Cre09.g386161 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g9095.t1,Cre29.g777900.t1.1 - - - - - - - - - Cre05.g232305 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g5134.t1 - - - - - - - - - Cre12.g535950 NUOS1 - 0 1 1.0 nan 0 1 1.0 nan M n - - NADH:ubiquinone oxidoreductase 76 kDa subunit NADH:ubiquinone oxidoreductase (Complex I 78 kDa subunit), mitochondrial; [=NDUFS1 subunit]; gi|34485506|gb|AAQ73136.1|; PMID: 15710684; PMID: 15450959 g13181.t1,Cre12.g535950.t1.1 PF09326,PF00111,PF00384,PF10588 PTHR11615:SF10,PTHR11615 KOG2282 1.6.5.3,1.6.99.3 K03934 GO:0016651,GO:0051536,GO:0055114,GO:0016491,GO:0009055 AT5G37510.2 CI76,EMB1467 NADH-ubiquinone dehydrogenase, mitochondrial, putative Cre13.g588750 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 7 - - g14444.t1 - - - - - - - - - Cre02.g089237 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 7 - - g1664.t1 PF02207 PTHR21497 - 6.3.2.19 K11978 GO:0004842,GO:0008270 AT5G02310.1 PRT6 proteolysis 6 Cre07.g356200 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g8281.t1 - - - - - - - - - Cre16.g682850 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 14 - - g16445.t1,Cre16.g682850.t1.1 - - - - - - - - - Cre08.g381750 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated - - - g8983.t1 - - - - - - - - - Cre10.g426650 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 - - g10543.t1, g10543.t2 - - - - - - - - - Cre13.g577201 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g14184.t1 PF03372 PTHR13078,PTHR13078:SF14 - - - - - - - Cre01.g009676 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 8 - - g244.t1 - - - - - - - - - Cre16.g654150 FAP63 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG20 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400] g15816.t1 - - - - - - - - - Cre03.g155051 SPA1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 9 - - g3161.t1,SPA1 PF00282 PTHR11999,PTHR11999:SF5 KOG1383 4.1.2.27 K01634 GO:0016831,GO:0019752,GO:0030170 AT1G27980.1 ATDPL1,DPL1 dihydrosphingosine phosphate lyase Cre09.g397216 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - Cytochrome P450, CYP3 superfamily Cytochrome P450, CYP3 superfamily. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP744 family has best BLAST hits to CYP5 family members (thromboxane A2 synthase in an g9858.t1,Cre02.g134050.t1.1 PF00067 PTHR24301,PTHR24301:SF127 KOG0158 1.14.14.1 K07424 GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT2G26170.1 CYP711A1,MAX1 cytochrome P450, family 711, subfamily A, polypeptide 1 Cre03.g152000 MCS1,ABA3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 Molybdenum cofactor sulfurase Molybdenum cofactor sulfurase, similar to N-terminus of Arabidopsis ABA3 g3093.t1,Cre03.g152000.t1.1,ABA3,MCS1 PF03473,PF00266,PF03476 PTHR14237:SF3,PTHR14237 KOG2362 - - GO:0003824,GO:0030151,GO:0030170,GO:0008152 AT1G16540.1 ABA3,ACI2,ATABA3,LOS5,SIR3 molybdenum cofactor sulfurase (LOS5) (ABA3) Cre11.g467676 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 17 - - g11606.t1 - - KOG1073 - - - - - - Cre11.g467677 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g11607.t2,Cre18.g745000.t2.1, g11607.t1,Cre18.g745000.t1.1 PF01694 PTHR22790:SF7,PTHR22790, PTHR22790,PTHR22790:SF7 - - - GO:0004252,GO:0016021 AT3G59520.1 ATRBL13,RBL13 RHOMBOID-like protein 13 Cre11.g467674 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 18 - - g11604.t1,Cre18.g745150.t1.1 - - - - - - - - - Cre02.g079926 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 10 - - g1460.t1 PF12499 - KOG2992 - - - AT2G10940.1 - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Cre11.g467672 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 5 - - g11602.t1,Cre18.g745250.t1.1 PF00188 PTHR10334 KOG3017 - - - AT4G33730.1 - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Cre11.g467673 PDE24 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - - 3\',5\'-cyclic-nucleotide phosphodiesterase Similar to calcium/calmodulin-dependent 3\',5\'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain g11603.t1,Cre18.g745200.t1.1,PDE24 PF00233 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre11.g467671 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g11601.t1,Cre18.g745300.t1.1,Cre18.g745300.t1.2 - - - - - - - - - Cre02.g104400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g2136.t1 - - - - - - - - - Cre11.g467678 COP6 - 0 14 1.0 1.0 0 14 1.0 1.0 C n downregulated 17 Chlamyopsin, light-gated proton channel rhodopsin Putative rhodopsin-based photoreceptor for sensory transduction. Opsin domain is coupled with two-component system, cyclase domain and SAM domain [PMID: 15143209]. g11608.t1,Cre18.g744950.t1.1,COP6 PF00512,PF00072,PF01036,PF02518,PF00211 PTHR24423 - - - GO:0000155,GO:0007165,GO:0016020,GO:0000156,GO:0000160,GO:0006355,GO:0005216,GO:0006811,GO:0005524,GO:0009190,GO:0016849,GO:0035556 AT5G35750.1 AHK2,HK2 histidine kinase 2 Cre11.g467679 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 17 - - g11609.t1,Cre18.g744900.t1.1 PF04982 - - - - - AT3G47980.1 - Integral membrane HPP family protein Cre13.g604600 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g14585.t1,Cre13.g604600.t1.1 - - - - - - - - - Cre07.g319750 HEL35 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g7395.t1,Cre07.g319750.t1.1,HEL35 PF00271,PF00270 PTHR24031:SF18,PTHR24031 KOG0350 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT4G15850.1 ATRH1,RH1 RNA helicase 1 Cre12.g514550 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g12698.t1 - - KOG1003 - - - AT3G23980.1 BLI,KOS1 BLISTER Cre03.g181250 CGLD13,SNE18 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 6 NAD-dependent sugar epimerase/dehydratase NAD dependent epimerase/dehydratase. Putative short chain dehydrogenase belonging to the extended family [PMID: 12230552]. Similarity to the N-terminal domain of Tic62 [PMID: 17374152 and PMID: 12426385]. Conserved protein related to nucleoside diphosph g3756.t1,SNE18 PF05368 PTHR10366,PTHR10366:SF135 - - - - AT4G31530.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre02.g103750 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g2120.t1,Cre02.g103750.t1.1 - - - - - - - - - Cre03.g189000 SRH8 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 11 - - g3914.t1,SRH8 PF00176,PF00271 PTHR10799,PTHR10799:SF208 - 3.6.4.- K10877 GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT3G19210.1 ATRAD54,CHR25,RAD54 homolog of RAD54 Cre07.g338700 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 - - g7879.t1, g7879.t2 PF04676 PTHR12072 - - - - AT5G56900.2 - CwfJ-like family protein / zinc finger (CCCH-type) family protein Cre04.g222350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 6 - - g4852.t1 - - - - - - - - - Cre01.g031750 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g718.t1,Cre01.g031750.t1.1 PF08772 PTHR12814 - - K11883 - AT5G41190.1 - - Cre14.g630350 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g15180.t1 PF02221 - - - - - AT3G44100.1 - MD-2-related lipid recognition domain-containing protein Cre10.g421000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 16 - - g10418.t1 - - - - - - - - - Cre09.g410400 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 8 - - g10168.t1 - - - - - - - - - Cre16.g673200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g16658.t1,Cre16.g673200.t1.1 - - - - - - - - - Cre08.g373050 BCC3 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 8 - - g8736.t1,BCC3 PF02785,PF08326,PF00364,PF02786,PF00289,PF01039 PTHR18866,PTHR18866:SF6 - 6.3.4.14,6.4.1.2 K11262 GO:0016874,GO:0003989,GO:0005524,GO:0006633,GO:0003824,GO:0008152 AT1G36160.1 ACC1,AT-ACC1,EMB22,GK,PAS3 acetyl-CoA carboxylase 1 Cre14.g613350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g14780.t1 PF03152 PTHR12555 KOG1816 - K14016 GO:0006511 AT2G21270.1 UFD1 ubiquitin fusion degradation 1 Cre13.g570150 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g14026.t1 PF06584 PTHR21689:SF2,PTHR21689 - - - - AT3G21430.2 ALY3,ATALY3 DNA binding Cre03.g206700 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g4177.t1 - - - - - - - - - Cre03.g162701 SRH5 - 0 14 1.0 1.0 0 14 1.0 1.0 M n - - - - g3335.t1,Cre03.g162700.t1.3,SRH5 PF00176,PF00271 PTHR10799:SF209,PTHR10799 - - - GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT2G28290.1 CHR3,SYD P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre03.g176930 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g3657.t1,Cre03.g176950.t1.3 PF03134 PTHR12300,PTHR12300:SF14 - - - - AT4G24960.3 ATHVA22D,HVA22D HVA22 homologue D Cre12.g504100 PHX20,NFU2 - 0 1 1.0 nan 0 1 1.0 nan C n - 13 Putative prolyl 4-hydroxylase Putative prolyl 4-hydroxylase similar to EGg Laying defective family member (egl-9) in C. elegans involved in hypoxia response g12487.t1,NFU2,PHX20 - PTHR12907 KOG3710 - - - - - - Cre12.g530200 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13052.t1,Cre12.g530200.t1.1 - - - - - - - - - Cre09.g395213 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g9803.t1,Cre02.g131600.t1.1 - - - - - - - - - Cre16.g652700 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 14 - - g15785.t1 - - - - - - - - - Cre01.g000700 ZFR1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g17.t1,ZFR1 PF00097 PTHR10588:SF7,PTHR10588 KOG1493 - - - AT3G03550.1 - RING/U-box superfamily protein Cre16.g681550 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g16472.t1 - - - - - - - - - Cre07.g318800 HSP22A - 0 3 1.0 1.0 0 3 1.0 1.0 O Y upregulated 11 Heat shock protein 22A Small heat shock protein containing an alpha-crystallin domain, most likely cytosolic; is arranged head-to-head with HSP22B, with which HSP22A shares 70% identity; PMID: 2473899, 8026482,1697261, 10982457, 16143837 g7369.t1,Cre07.g318800.t1.1 PF00011 PTHR11527,PTHR11527:SF14 KOG0710 - - - AT1G53540.1 - HSP20-like chaperones superfamily protein Cre12.g503650 SMM40 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 - - g12496.t1,Cre12.g503650.t1.1,SMM40 PF08241 PTHR10108,PTHR10108:SF368 - - - GO:0008152,GO:0008168 AT1G69526.2 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre01.g032800 MRS2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g741.t1,Cre01.g032800.t1.1,MRS2 - PTHR13890 KOG2662 - - - AT5G64560.1 ATMGT9,MGT9,MRS2-2 magnesium transporter 9 Cre07.g317800 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 13 - - g7347.t1,Cre07.g317800.t1.1, g7347.t2 PF04091 PTHR12702 - - - GO:0000145,GO:0006904 AT3G56640.1 SEC15A exocyst complex component sec15A Cre01.g039850 CPK5,CGL48 - 0 19 1.0 1.0 0 19 1.0 1.0 M Y downregulated 15 Carbohydrate/purine kinase, possible lysine decarboxylase Carbohydrate/purine kinase, possible lysine decarboxylase. Conserved in Green lineage. Previously annotated as CGL48 g890.t1,CPK5 PF00294,PF03641 PTHR10584:SF26,PTHR10584 KOG2854 - - - AT1G50575.1 - Putative lysine decarboxylase family protein Cre01.g028713 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 6 - - g655.t1 - - - - - - - - - Cre16.g683953 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g16422.t1 PF03110 - - - - GO:0003677,GO:0005634 AT2G42200.1 SPL9 squamosa promoter binding protein-like 9 Cre14.g631000 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 16 - - g15206.t1 - - - - - - - - - Cre02.g110850 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g2276.t1,Cre02.g110850.t1.1 PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT1G67890.1 - PAS domain-containing protein tyrosine kinase family protein Cre12.g512250 RRP6b,RRP7 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g12301.t1,RRP6b,RRP7 PF00570,PF01612 PTHR12124,PTHR12124:SF2 - 3.1.13.- K12591 GO:0003676,GO:0005622,GO:0006139,GO:0008408 AT5G35910.1 - Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain Cre08.g368150 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g8626.t1 PF00069 PTHR24362:SF161,PTHR24362 - - - GO:0004672,GO:0005524,GO:0006468 AT3G50310.1 MAPKKK20 mitogen-activated protein kinase kinase kinase 20 Cre12.g552450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g13489.t1,Cre12.g552450.t1.1 - - - - - - - - - Cre08.g385700 SNAPG1 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 Gamma-SNAP, SNARE complex protein Gamma-SNAP, adaptor protein connecting NSF to cis-SNARE complex. Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Previously annotated as SNAPG1 g9075.t1,Cre08.g385700.t1.1,SNAPG1 - PTHR13768:SF2,PTHR13768 KOG1585 - - GO:0006886 AT4G20410.1 GAMMA-SNAP,GSNAP gamma-soluble NSF attachment protein Cre12.g521336 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g12843.t1,Cre12.g521336.t1.1 - - - - - - - - - Cre07.g342650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 3 - - g7932.t1 PF01753 PTHR23151:SF8,PTHR23151 - - - GO:0008270 - - - Cre16.g684450 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - - - - g16409.t1,Cre16.g684450.t1.1 PF00069 PTHR24361,PTHR24361:SF112 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre07.g343300 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g7985.t1 - PTHR23151:SF8,PTHR23151 - - - - - - - Cre08.g378417 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g8907.t1, g8907.t2 - - - - - - - - - Cre16.g687182 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g16837.t1,Cre01.g070900.t1.1,Cre01.g070900.t1.2 - - - - - - - - - Cre10.g438250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g10795.t1 - - - - - - - - - Cre14.g624125 - 0 1 1.0 nan 0 1 1.0 nan - n - 15 - - g15040.t2, g15040.t1 - - - - - - - - - Cre16.g680200 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g16504.t1 PF03547 - KOG2722 - - GO:0016021,GO:0055085 AT1G71090.1 - Auxin efflux carrier family protein Cre10.g425650 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 - - g10519.t1,Cre10.g425650.t1.1 PF03006 - KOG0748 - - GO:0016021 - - - Cre14.g608700 ADT1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g14673.t1,Cre14.g608700.t1.1,ADT1 PF00155 PTHR11751,PTHR11751:SF15 KOG0634 2.6.1.27,2.6.1.5,2.6.1.57 K00838 GO:0009058,GO:0016769,GO:0030170 - - - Cre09.g386756 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g9138.t1,Cre29.g778800.t1.1 - - - - - - AT2G26680.1 - - Cre09.g386757 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g9139.t1 - - - - - - - - - Cre09.g386754 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g9136.t1,Cre29.g778750.t1.1,Cre29.g778750.t1.2 - - - - - - - - - Cre09.g386753 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g9135.t1,Cre29.g778700.t1.1,Cre29.g778700.t1.2 PF04689 - - - - GO:0003677,GO:0005634,GO:0006355 - - - Cre09.g386751 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g9133.t1 - - - - - - - - - Cre02.g098400 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g2001.t2, g2001.t1,Cre02.g098400.t1.1 - - - - - - - - - Cre02.g081650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g1495.t1,Cre02.g081650.t1.1 - - - - - - AT3G28720.1 - - Cre03.g179300 SRH6 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3711.t2,SRH6, g3711.t1,SRH6 PF00271,PF00385,PF00176 PTHR10799,PTHR10799:SF70 KOG0384 3.6.4.12 K11367 GO:0003676,GO:0004386,GO:0005524,GO:0003677 AT2G13370.1 CHR5 chromatin remodeling 5 Cre12.g515700 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g12722.t1,Cre12.g515700.t1.1 - - - - - - - - - Cre16.g692901 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g15619.t1 PF07683,PF02492 PTHR13748:SF11,PTHR13748 - - - - AT1G80480.1 PTAC17 plastid transcriptionally active 17 Cre16.g692900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g15618.t1,Cre16.g692900.t1.1 - - - - - - - - - Cre16.g692902 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 - - g15620.t1 PF00400 PTHR22847,PTHR22847:SF98 KOG0266 - - - - - - Cre10.g463850 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 10 - - g11366.t1,Cre10.g463850.t1.1 - - - - - - - - - Cre01.g067282 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1278.t1 - - - - - - - - - Cre02.g084176 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g1552.t1 - - - - - - - - - Cre12.g545750 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 12 - - g13640.t1,Cre12.g545750.t1.1 PF00069 PTHR11584,PTHR11584:SF47 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT3G59790.1 ATMPK10,MPK10 MAP kinase 10 Cre03.g190650 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g3946.t1 - - - - - - - - - Cre16.g654700 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 12 - - g15827.t1 PF12499 - KOG4719 - - - - - - Cre16.g690506 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g16208.t2, g16208.t1 - - - - - - - - - Cre16.g658850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g15917.t1 PF00153 PTHR24089:SF156,PTHR24089 KOG0759 - - - AT5G26200.1 - Mitochondrial substrate carrier family protein Cre17.g738800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g17869.t1,Cre17.g738800.t1.1 - - - - - - - - - Cre03.g199600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g4336.t1 PF01062 - - - - - AT3G61320.1 - Bestrophin-like protein Cre07.g347150 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g8079.t1,Cre07.g347150.t1.1 - - - - - - - - - Cre14.g627477 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g15114.t1 - - - - - - - - - Cre06.g305450 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g7070.t1 - - - - - - - - - Cre17.g734350 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 13 - - g17755.t1 - - - - - - - - - Cre17.g730650 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 16 - - g17657.t1,Cre17.g730650.t1.1 - - - - - - - - - Cre16.g676645 FAP200 - 0 1 1.0 nan 0 1 1.0 nan O n - - Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g16741.t1,Cre01.g066850.t1.1,Cre01.g066850.t1.2,FAP200 - PTHR10891:SF163,PTHR10891 KOG0027 - - - AT5G21274.1 ACAM-6,CAM6 calmodulin 6 Cre06.g249350 DMC3 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g5585.t1,DMC3 PF00145 PTHR10629 - - - GO:0003677,GO:0006306 AT4G14140.1 DMT02,DMT2,MET02,MET2 DNA methyltransferase 2 Cre12.g537611 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g13220.t1,Cre65.g793350.t1.1 - - - - - - - - - Cre08.g362200 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8483.t1 - - - - - - - - - Cre01.g053050 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g1172.t1,Cre01.g053050.t1.1 - - - - - - - - - Cre08.g385951 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g9081.t1,Cre08.g385951.t1.1 - - - - - - - - - Cre16.g666150 DCC2,ODA1,DC2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 14 Flagellar outer dynein arm-docking complex protein 2 Flagellar outer dynein arm-docking complex subunit 2 (ODA-DC2). Previously annotated as ODA1 g16076.t1,Cre16.g666150.t1.1,DC2,ODA1 - PTHR21694,PTHR21694:SF2 - - - - - - - Cre13.g578150 RRA1 - 0 1 1.0 nan 0 1 1.0 nan O n - 18 Regulator of ribonuclease activity Regulator of ribonuclease activity A (rraA) g14204.t1,Cre13.g578150.t1.1,RRA1 PF03737 - - - K02553 - AT5G56260.1 - Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase Cre01.g010550 HLD2 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 7 - - g264.t1,HLD2, g264.t2,HLD2 PF00561 PTHR10992,PTHR10992:SF98 KOG4178 - - - AT3G51000.1 - alpha/beta-Hydrolases superfamily protein Cre03.g174300 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 - - g3596.t1,Cre03.g174300.t1.1 - - - - - - - - - Cre13.g570300 UBC24 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g14029.t1,Cre13.g570300.t1.1,UBC24 PF00179 PTHR24068,PTHR24068:SF31 KOG0417 - - GO:0016881 AT3G24515.1 UBC37 ubiquitin-conjugating enzyme 37 Cre06.g268950 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 16 - - g6034.t1,Cre06.g268950.t1.1 PF07714 PTHR23257,PTHR23257:SF99 KOG0593 - - GO:0004672,GO:0006468 AT2G17700.1 - ACT-like protein tyrosine kinase family protein Cre03.g206650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g4178.t1,Cre03.g206650.t1.1 PF00069 PTHR24347 - - - GO:0004672,GO:0005524,GO:0006468 AT1G12580.1 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 Cre07.g325150 TGL12 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 9 - - g7511.t1,TGL12 PF01764 PTHR21493:SF26,PTHR21493 - - - GO:0004806,GO:0006629 AT2G42450.1 - alpha/beta-Hydrolases superfamily protein Cre08.g381702 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g8982.t1 PF00171 PTHR11699:SF49,PTHR11699 KOG2451 1.2.1.16 K00135 GO:0008152,GO:0016491,GO:0055114 AT1G79440.1 ALDH5F1,SSADH,SSADH1 aldehyde dehydrogenase 5F1 Cre17.g703850 ODA3,DCC1,DC1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 Outer dynein arm-docking complex subunit 1 Outer dynein arm-docking complex subunit 1 (ODA-DC1). Previously annotated as ODA3 g17063.t1,Cre17.g703850.t1.1,DC1,ODA3 - - - - - - - - - Cre16.g659100 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 - - g15923.t1 - - - - - - - - - Cre13.g577352 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 18 - - g14187.t1 - - KOG4571 - - - - - - Cre04.g217700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g4531.t1, g4531.t2 - PTHR24362,PTHR24362:SF143 - - - - - - - Cre10.g462816 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g11344.t1 - - - - - - AT1G62980.1 ATEXP18,ATEXPA18,ATHEXP ALPHA 1.25,EXP18,EXPA18 expansin A18 Cre12.g519700 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g12808.t1 PF01926 PTHR11649 - - - GO:0005525,GO:0005622 AT2G22870.1 EMB2001 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre16.g663650 TRS33 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 Component of TRAPP complex Expressed Protein. Conserved protein similar to TRS33, a component of the TRAPP complex, involved in ER to Golgi vesicle transport. g16023.t1,Cre16.g663650.t1.1,TRS33 PF04051 PTHR12817 KOG3316 - - - AT3G05000.1 - Transport protein particle (TRAPP) component Cre13.g573450 CPS - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g14099.t1,Cre13.g573450.t1.1,CPS PF03178 PTHR10644 KOG1896 - K14401 GO:0003676,GO:0005634 AT5G51660.1 ATCPSF160,CPSF160 cleavage and polyadenylation specificity factor 160 Cre06.g294250 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g6812.t1,Cre06.g294250.t1.1 PF12499 - - - - - - - - Cre01.g038950 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g871.t1,Cre01.g038950.t1.1 PF08806 PTHR13077,PTHR13077:SF5 KOG3384 - - - AT1G05720.1 - selenoprotein family protein Cre14.g621200 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g14971.t1 - - - - - - - - - Cre12.g484300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g12020.t1,Cre12.g484300.t1.1 - - - - - - AT4G30390.1 - - Cre06.g271400 PGP3 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - Phosphoglycolate phosphatase/4-nitrophenylphosphatase Phosphoglycolate phosphatase (EC 3.1.3.18), chloroplast precursor; similar to Chlamydomonas PGP1. Probably a 4-nitrophenylphosphatase. Cited by Kerk et al. 2008 [PMID: 18156295] as chronophin-like CTD protein phosphatase g6090.t1,PGP3 PF00702 PTHR19288:SF11,PTHR19288 KOG2882 - - GO:0003824,GO:0008152 AT5G36700.1 ATPGLP1,PGLP1 2-phosphoglycolate phosphatase 1 Cre12.g531750 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g13085.t1,Cre12.g531750.t1.1 PF05686 PTHR12203,PTHR12203:SF13 - - - - AT3G48980.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre12.g553550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g13463.t1,Cre12.g553550.t1.1 - - - - - - - - - Cre12.g488500 ARC6 - 0 1 1.0 nan 0 1 1.0 nan C Y - 10 - - g12215.t1,Cre12.g488500.t1.1 - - - - - - AT5G42480.1 ARC6 Chaperone DnaJ-domain superfamily protein Cre09.g413450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g10241.t1 PF07282 - - - - - - - - Cre12.g552600 FKM9 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 10 - - g13486.t1,FKM9 - - - - - - AT2G26680.1 - - Cre10.g455300 SMP1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Small nuclear ribonucleoprotein SmD3 Small nuclear ribonucleoprotein SmD3. Previously annotated to SMP1 g11174.t1,Cre10.g455300.t1.1,SMP1 PF01423 PTHR23338 KOG3172 - - - AT1G20580.1 - Small nuclear ribonucleoprotein family protein Cre12.g521100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g12838.t1 - - - - - - - - - Cre01.g021150 TMU1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 tRNA (uracil-5-)-methyltransferase tRNA methyltransferase, catalyzes the transfer of a methyl group from S-adenosylmethionine to position 5 of the uridine residue at position 54 of tRNAs. Previously annotated as TRM2C g491.t2,TMU1, g491.t1,TMU1 PF05958 PTHR11061 - - - GO:0006396,GO:0008173 AT3G21300.1 - RNA methyltransferase family protein Cre14.g616450 CYG46 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 Adenylate/guanylate cyclase Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens. Rhodopsin-like g14851.t1 PF00211,PF03924 PTHR11920:SF113,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre02.g143387 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g2829.t1 - - - - - - - - - Cre12.g528500 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g13014.t1,Cre12.g528500.t1.1 PF00293 PTHR22769 - 3.6.1.- K03574 GO:0016787 AT1G68760.1 ATNUDT1,ATNUDX1,NUDX1 nudix hydrolase 1 Cre09.g395028 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 - - g9798.t1,Cre02.g131450.t1.1 PF02470 - - - - - AT3G20320.1 TGD2 trigalactosyldiacylglycerol2 Cre17.g708200 HFO36 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 Histone H4 - g17159.t1,Cre17.g708200.t1.1,HFO36 PF00125 PTHR10484 KOG3467 - K11254 GO:0000786,GO:0003677,GO:0005634,GO:0006334 AT5G59690.1 - Histone superfamily protein Cre10.g439500 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g10822.t1 - - - - - - - - - Cre02.g095138 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g1911.t1,Cre11.g474000.t1.1 - - - - - - - - - Cre02.g095139 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g1912.t1,Cre11.g474050.t1.1 - - - - - - - - - Cre02.g095135 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 10 - - g1908.t1,Cre11.g473900.t1.1 - - - - - - - - - Cre02.g095136 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 14 - - g1909.t1,Cre11.g473930.t1.1,Cre11.g473930.t1.2 PF04488 - - - - - - - - Cre13.g574100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 4 - - g14113.t1 PF03407 - - - - - AT2G35610.1 XEG113 xyloglucanase 113 Cre13.g579350 - 0 1 1.0 nan 0 1 1.0 nan M n - 18 - - g14233.t1 - - - - - - - - - Cre06.g263100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g5910.t1 PF10263 PTHR21220 - - - - - - - Cre15.g636600 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g15355.t1,Cre15.g636600.t1.1 PF00560 - - - - GO:0005515 - - - Cre12.g483650 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 6 - - g12005.t1,Cre12.g483650.t1.1 PF00069 PTHR24362,PTHR24362:SF57 KOG0594 - - GO:0004672,GO:0005524,GO:0006468 AT5G01920.1 STN8 Protein kinase superfamily protein Cre05.g238450 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g5498.t1 - - - - - - - - - Cre03.g144967 - 0 1 1.0 nan 0 1 1.0 nan M n - 5 - - g2912.t1,Cre01.g058150.t1.1,Cre01.g058150.t1.2 PF12037,PF00004 PTHR23075 KOG0742 - - GO:0005524 AT3G03060.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre03.g149250 ICL2 - 0 6 1.0 1.0 0 6 1.0 1.0 C n upregulated 2 - - g3035.t1,Cre03.g149250.t1.1,ICL2 PF00463 PTHR21631,PTHR21631:SF4 - - - GO:0003824,GO:0008152 AT2G43180.1 - Phosphoenolpyruvate carboxylase family protein Cre08.g384628 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 - - g9051.t1 PF01753 PTHR13244 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre12.g522450 SEC31 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 COP-II coat subunit Expressed Protein. Component of COP-II vesicle coat complex involved in ER-to-Golgi transport. Part of Sec13/31 sub-complex. g12866.t1,Cre12.g522450.t1.1 PF00400,PF07304 PTHR13923:SF11,PTHR13923 KOG0307 - K14005 - AT3G63460.1 - transducin family protein / WD-40 repeat family protein Cre06.g290200 CYG39 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 17 Adenylate/guanylate cyclase Similar to guanylate cyclase soluble, beta-2 chain (GCS-beta-2) [Bos taurus] g6732.t1,Cre06.g290200.t1.1 PF00211 PTHR11920:SF126,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre04.g226900 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g4966.t1,Cre04.g226900.t1.1 PF01900 - - - - GO:0004540,GO:0008033 - - - Cre03.g151300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g3079.t1, g3079.t2 PF00069 PTHR23257:SF325,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.2 - PAS domain-containing protein tyrosine kinase family protein Cre17.g727150 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 14 - - g17580.t1 - - - - - - - - - Cre03.g191600 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - - - g3965.t1 - - - - - - - - - Cre14.g614350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g14803.t1,Cre14.g614350.t1.1 PF00169 PTHR22903 - - - GO:0005515 AT5G05710.1 - Pleckstrin homology (PH) domain superfamily protein Cre06.g260450 LCI20 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 4 2-oxoglutarate/malate translocator Possibly chloroplast-located transporter, homologous to AtDCT1/2 [PMID:7873543]; Low-CO2 Inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]; conserved in green lineage. Acclimation to changing CO2 concentrations and light i g5853.t1,Cre06.g260450.t1.1 PF00939 PTHR10283:SF13,PTHR10283 - - - GO:0005215,GO:0006814,GO:0016020,GO:0055085 AT5G64290.1 DCT,DIT2.1 dicarboxylate transport 2.1 Cre16.g661650 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 13 - - g15978.t1 PF00847 - - - K09286 GO:0003700,GO:0006355 AT5G18560.1 PUCHI Integrase-type DNA-binding superfamily protein Cre08.g365800 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g8571.t1 PF00891,PF08100 PTHR11746:SF53,PTHR11746 - - - GO:0008171,GO:0008168,GO:0046983 AT1G51990.1 - O-methyltransferase family protein Cre01.g050624 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g1121.t1, g1121.t2 - - - - - - - - - Cre09.g389504 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 11 - - g9643.t1,Cre02.g124550.t1.1,Cre02.g124550.t1.2 - - - - - - - - - Cre12.g532050 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 7 - - g13091.t1,Cre12.g532050.t1.1 PF00023,PF00069,PF04564 PTHR24420,PTHR24420:SF528 KOG1187 - - GO:0005515,GO:0004672,GO:0005524,GO:0006468,GO:0000151,GO:0004842,GO:0016567 AT5G51270.1 - U-box domain-containing protein kinase family protein Cre10.g435500 EFT2 - 0 1 1.0 nan 0 1 1.0 nan M Y - 5 Elongation factor Ts-like protein Elongation factor Ts-like protein, homolog of Arabidopsis AAV43776 - pfam00889, EF_TS g10740.t1 PF00889 PTHR11741 KOG1071 - - GO:0003746,GO:0005622,GO:0006414 AT4G11120.1 - translation elongation factor Ts (EF-Ts), putative Cre09.g407801 AKC1 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 5 - - g10109.t1,Cre09.g407800.t1.3 PF03109 PTHR10566,PTHR10566:SF10 KOG1235 - K08869 - AT5G05200.1 - Protein kinase superfamily protein Cre05.g232200 LCI18,NDA3 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 Mitochondrial NADH dehydrogenase Putative mitochondrial NADH dehydrogenase (ubiquinone oxidoreductase). Alternative enzyme to complex I. Rotenone-insensitive; probably external face of membrane. see: PMID: 10571867; Low-CO2 inducible gene LCI18 revealed by cDNA array analyses; regulated g5135.t1,Cre05.g232200.t1.1,LCI18,NDA3 PF07992,PF00070 PTHR22915:SF4,PTHR22915 KOG2495 1.6.99.3 K03885 GO:0016491,GO:0050660,GO:0055114 AT4G05020.1 NDB2 NAD(P)H dehydrogenase B2 Cre02.g120301 SELH1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g2498.t1,Cre02.g120300.t1.2 - - - - - - AT4G31360.1 - selenium binding Cre09.g390500 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g9484.t1,Cre09.g390500.t1.1 - - - - - - - - - Cre06.g275400 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g6175.t1 PF07202 PTHR10331 - - K11502 - - - - Cre07.g324050 CUL1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Ubiquitin ligase SCF complex subunit Cullin E3 ubiquitin ligase SCF complex subunit Cullin g7485.t1,Cre07.g324050.t1.1,CUL1 PF00888,PF10557 PTHR11932 KOG2166 - K03869 GO:0006511,GO:0031461,GO:0031625 AT1G26830.1 ATCUL3,ATCUL3A,CUL3,CUL3A cullin 3 Cre17.g747547 - 0 1 1.0 nan 0 1 1.0 nan O n - 3 - - g18067.t1,Cre20.g757850.t1.1,Cre20.g757850.t1.2 - - - - - - - - - Cre10.g450100 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 16 - - g11063.t1 PF00520,PF00027 PTHR10217:SF29,PTHR10217 KOG0500 - K04955 GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G22200.1 AKT2,AKT2/3,AKT3,KT2/3 potassium transport 2/3 Cre13.g603950 CYN50,CYN14 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g14573.t1,Cre13.g603950.t1.1,CYN14 PF00160 - - - - GO:0003755,GO:0006457 AT4G17070.1 - peptidyl-prolyl cis-trans isomerases Cre09.g396900 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g9348.t1,Cre09.g396900.t1.1 PF00293,PF09296,PF09297 PTHR22769 KOG3084 3.6.1.22 K03426 GO:0016787,GO:0046872 AT5G20070.1 ATNUDT19,ATNUDX19,NUDX19 nudix hydrolase homolog 19 Cre14.g628800 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g15145.t1 PF00082 PTHR10795,PTHR10795:SF30 KOG4266 3.4.21.112 K08653 GO:0004252,GO:0006508 AT5G19660.1 ATS1P,ATSBT6.1,S1P SITE-1 protease Cre01.g047900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g1064.t1 - PTHR12085 KOG2562 - K11583 - AT5G18580.1 EMB40,FASS,FASS 2,FS1,GDO,TON2 tonneau 2 (TON2) Cre11.g480750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g11935.t1 PF01112 PTHR10188,PTHR10188:SF8 - 3.4.25.- K08657 GO:0016787 AT4G00590.1 - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Cre03.g190550 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3945.t1,Cre03.g190550.t1.1 PF08638 PTHR12809,PTHR12809:SF2 - - - GO:0016455,GO:0006357,GO:0016592 AT3G04740.1 ATMED14,MED14,SWP RNA polymerase II transcription mediators Cre14.g615400 THB1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 8 Truncated hemoglobin Truncated hemoglobin, plastid-located. Orthologous to C. eugametos LI637 and LI410 [PMID: 8177215, PMID: 10563822]; Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, other eubacteria and unicellular eukaryo g14826.t1,Cre14.g615400.t1.1 PF01152 PTHR10681,PTHR10681:SF47 - - - GO:0015671,GO:0019825 - - - Cre05.g238950 CGLD33 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 14 - - g5510.t1 PF00588 PTHR12029 KOG0838 - - GO:0003723,GO:0006396,GO:0008173 AT4G15520.1 - tRNA/rRNA methyltransferase (SpoU) family protein Cre16.g686173 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g16828.t1,Cre01.g070500.t1.1,Cre01.g070500.t1.2 PF00160 - KOG0879 - - GO:0003755,GO:0006457 AT4G34870.1 ATCYP1,ROC5 rotamase cyclophilin 5 Cre08.g375301 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 15 - - g8842.t1 - - - - - - - - - Cre12.g539750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g13780.t1,Cre12.g539750.t1.1 PF09649 - - - - - AT4G08310.1 - - Cre12.g560800 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 13 - - g13302.t1,Cre12.g560800.t1.1 PF07687,PF01546 PTHR11014:SF44,PTHR11014 - - - GO:0016787,GO:0008152 AT1G51760.1 IAR3,JR3 peptidase M20/M25/M40 family protein Cre12.g531500 DRC3,FAP134 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein. Found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation g13080.t1,Cre12.g531500.t1.1,FAP134 PF00560 PTHR10588:SF32,PTHR10588 KOG2739 - - GO:0005515 AT4G03260.1 - Outer arm dynein light chain 1 protein Cre16.g675850 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g16600.t1,Cre16.g675850.t1.1 PF01636,PF02771,PF02770,PF00441 PTHR10909,PTHR10909:SF147 KOG1469 1.3.99.3 K00249 GO:0003995,GO:0055114,GO:0016627 AT3G06810.1 IBR3 acyl-CoA dehydrogenase-related Cre16.g675851 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g16601.t1 - - - - - - - - - Cre03.g164050 KIN12-1,KIN15-1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g3363.t1,KIN12-1,KIN15-1, g3363.t2,KIN12-1,KIN15-1 PF00225 PTHR24115:SF82,PTHR24115 KOG4280 - K10400 GO:0003777,GO:0005524,GO:0007018 AT3G17360.1 POK1 phragmoplast orienting kinesin 1 Cre01.g001000 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g23.t1 - - - - - - - - - Cre01.g044450 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 - - g994.t1 PF01694 - - - - GO:0004252,GO:0016021 - - - Cre12.g526850 HEL56 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g12981.t1,Cre12.g526850.t1.1,HEL56 PF00271,PF00270 PTHR24031,PTHR24031:SF29 KOG0346 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT4G34910.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre13.g583700 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g14330.t1 - - KOG0487 - - - - - - Cre13.g586950 NAT32 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g14401.t1,Cre13.g586950.t1.1,NAT32 PF00583 - KOG2488 - - GO:0008080,GO:0008152 - - - Cre16.g685613 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 10 - - g16823.t1,Cre01.g070400.t1.1 PF05970 PTHR23274 - - - - - - - Cre07.g353050 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8211.t1,Cre07.g353050.t1.1 - - - - - - - - - Cre10.g428850 DLT1,DLC9,LC9 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g10594.t1,Cre10.g428850.t1.1,DLC9,LC9 PF03645 PTHR21255 KOG4081 - - - - - - Cre15.g643703 RLS9 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g15510.t1,RLS9 PF00076 PTHR11546,PTHR11546:SF4 KOG1457 - - GO:0003676 AT3G21215.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre02.g145630 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g2551.t1 - - - - - - - - - Cre09.g403000 PAP9 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 14 Non-canonical poly(A) polymerase, hypothetical protein Putative non-canonical Poly(A) polymerase (PAP), COG5260, TRF4, DNA polymerase sigma g9202.t1,PAP9 PF03828,PF01909 PTHR23092 KOG1906 - - GO:0016779 AT5G53770.1 - Nucleotidyltransferase family protein Cre02.g075900 STK9,STPK9 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK9 g1360.t1,STK9,STPK9 PF00069 PTHR24344:SF58,PTHR24344 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT5G66880.1 SNRK2-3,SNRK2.3,SRK2I sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 Cre01.g053500 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g1183.t1 PF00432 PTHR11774:SF5,PTHR11774 KOG0366 2.5.1.60 K05956 GO:0003824 AT3G12070.1 AtRGTB2,RGTB2 RAB geranylgeranyl transferase beta subunit 2 Cre01.g063267 BLP1 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 Bystin-like protein - g1265.t1,Cre23.g766750.t1.1,BLP1 PF05291 PTHR12821 KOG3871 - - - AT1G31660.1 - - Cre09.g399900 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g9271.t2, g9271.t3, g9271.t1,Cre09.g399900.t1.1 - - - - - - - - - Cre09.g399907 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 11 - - g9272.t1 PF00536 PTHR23240 - - - - AT2G45700.1 - sterile alpha motif (SAM) domain-containing protein Cre02.g115250 POC1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 Centriole proteome protein Found in basal body proteome [PMID: 15964273]. Characterized by Keller et al. 2009 [PMID: 19109428] as a highly abundant centriole protein containing a WD40 domain. g2382.t1,POC1 PF00400 PTHR22847:SF103,PTHR22847 KOG0266 - - - AT3G49660.1 - Transducin/WD40 repeat-like superfamily protein Cre07.g328800 NSG13 - 0 4 1.0 1.0 0 4 1.0 1.0 C n downregulated 15 Protein expressed during nitrogen-starved gametogenesis Predicted to contain 3 transmembrane helices and 4 Armadillo repeats; expressed exclusively during gametogenesis, at a late stage (PMID: 15459796). Identified by Abe et al. 2004 [PMID: 15459796] as NSG13, a gene expressed during nitrogen-starved gametoge g7646.t1,NSG13 PF00514 - - - - GO:0005515 - - - Cre08.g373150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g8738.t1 - - - - - - - - - Cre16.g695218 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g15564.t1,Cre16.g695218.t1.1 PF00069 PTHR23257:SF325,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT4G31170.1 - Protein kinase superfamily protein Cre12.g557800 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g13374.t1,Cre12.g557800.t1.1 PF01984 PTHR10840 KOG3431 - - GO:0003677 AT1G29850.1 - double-stranded DNA-binding family protein Cre01.g000350 OXR1 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 4 - - g10.t1,OXR1 PF00175 PTHR19370,PTHR19370:SF9 - - - GO:0016491,GO:0055114 AT1G15140.1 - FAD/NAD(P)-binding oxidoreductase Cre09.g416350 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g10305.t1,Cre09.g416350.t1.1 PF00956 PTHR11875,PTHR11875:SF7 KOG1507 - K11279 GO:0005634,GO:0006334 AT4G26110.2 ATNAP1;1,NAP1;1 nucleosome assembly protein1;1 Cre01.g043100 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g964.t1,Cre01.g043100.t1.1 PF01894 - KOG3267 - - - AT1G21065.1 - - Cre10.g436053 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g10752.t1 - - - - - - - - - Cre10.g437900 SPL31 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g10788.t2,SPL31, g10788.t1,SPL31 PF06101 PTHR17204:SF19,PTHR17204 - - - - AT3G04350.1 - Plant protein of unknown function (DUF946) Cre08.g369550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8658.t1,Cre08.g369550.t1.1 - - - - - - - - - Cre12.g538150 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g13232.t1,Cre12.g538150.t1.1 PF03517 PTHR21399 KOG3238 - - - AT5G62290.2 - nucleotide-sensitive chloride conductance regulator (ICln) family protein Cre16.g678900 HIK - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 14 - - g16535.t1,Cre16.g678900.t1.1,HIK PF00072 PTHR26402:SF251,PTHR26402 - - - GO:0000156,GO:0000160,GO:0006355 AT2G01830.2 AHK4,ATCRE1,CRE1,WOL,WOL1 CHASE domain containing histidine kinase protein Cre13.g590905 - 0 1 1.0 nan 0 1 1.0 nan SP n - 6 - - g14491.t1,Cre13.g590905.t1.1 - - - - - - - - - Cre13.g590900 APC11 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 10 Anaphase promoting complex subunit 11 Subunit of anaphase promoting complex; contains a RING domain. g14490.t1,Cre13.g590900.t1.1, g14490.t2 PF00097 PTHR11210:SF15,PTHR11210 KOG1493 - K03358 - AT3G05870.1 APC11 anaphase-promoting complex/cyclosome 11 Cre03.g166750 PTK3 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 16 Putative tyrosine kinase Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g3422.t1,Cre03.g166750.t1.1,PTK3 PF07714 PTHR23257:SF327,PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT5G03730.1 AtCTR1,CTR1,SIS1 Protein kinase superfamily protein Cre17.g727700 HEL65 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 1 - - g17592.t1,HEL65 PF00271,PF00270 PTHR24031,PTHR24031:SF161 KOG0331 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT5G26742.2 emb1138 DEAD box RNA helicase (RH3) Cre10.g427500 CYP739A1,CYP32 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 Cytochrome P450, CYP197 superfamily Cytochrome P450, CYP197 superfamily. The CYP85 clan families CYP85 and CYP90 make brassinosteroids in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols. Previously annotated as CYP739A1 g10560.t1,Cre10.g427500.t1.1,CYP32 PF00067 PTHR24286 - - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT5G24900.1 CYP714A2 cytochrome P450, family 714, subfamily A, polypeptide 2 Cre14.g613800 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 18 - - g14790.t1 - - - - - - - - - Cre10.g426450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 12 - - g10537.t1,Cre10.g426450.t1.1 - - - - - - - - - Cre12.g558950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g13349.t1 PF00505 - KOG0381 - - GO:0003677 AT3G28730.1 ATHMG,HMG,NFD,SSRP1 high mobility group Cre05.g237650 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 15 - - g5468.t1, g5468.t2 - - KOG4593 - - - - - - Cre09.g409250 GTR24 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 Glycosyltransferase; ceramide glucosyltransferase Glycosyltransferase g10142.t1,Cre09.g409250.t1.1,GTR24 PF00535 - - - - - AT2G19880.2 - Nucleotide-diphospho-sugar transferases superfamily protein Cre07.g355600 NTR3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 NADPH dependent thioredoxin reductase Similar to AtNTRA and AtNTRB targeted to cytosol and mitochondria in Arabidopsis due to alternative initiation of transcription. Apparently no alternative initiation of transcription for this NTR in Chlamy and no N-terminal extension for targeting to the g8269.t1 PF07992,PF00070 PTHR22912,PTHR22912:SF51 KOG0404 1.8.1.9 K00384 GO:0016491,GO:0050660,GO:0055114 AT2G17420.1 ATNTRA,NTR2,NTRA NADPH-dependent thioredoxin reductase A Cre12.g491000 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g12164.t1,Cre12.g491000.t1.1 - - - - - - - - - Cre14.g634279 - 0 1 1.0 nan 0 1 1.0 nan - n - 17 - - g15293.t1 - - - - - - - - - Cre03.g158300 PTK7 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 Putative tyrosine kinase Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g3240.t1,PTK7 PF00069,PF07714 PTHR23257:SF350,PTHR23257 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre02.g113150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 13 - - g2330.t1,Cre02.g113150.t1.1 - - - - - - - - - Cre04.g220050 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g4799.t1,Cre04.g220050.t1.1 PF00069,PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G03730.1 AtCTR1,CTR1,SIS1 Protein kinase superfamily protein Cre03.g180900 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g3749.t2, g3749.t1 - - - - - - - - - Cre07.g312300 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g7226.t1,Cre07.g312300.t1.1 PF03992 - - - - GO:0005737,GO:0016491,GO:0017000 - - - Cre10.g467000 IFT55,IFT57 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 Intraflagellar transport protein 57 Intraflagellar transport particle protein 57/55. Also known as IFT55 g11444.t1,Cre10.g467000.t1.1,IFT55 PF10498 PTHR16011 KOG0972 - K04638 - - - - Cre13.g603176 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 8 - - g14545.t1 PF00743 PTHR23023,PTHR23023:SF8 - 1.14.13.8 K00485 GO:0004499,GO:0050660,GO:0050661,GO:0055114 AT4G28720.1 YUC8 Flavin-binding monooxygenase family protein Cre09.g393991 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 9 - - g9769.t1 - - - - - - - - - Cre05.g232751 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 10 - - g5120.t1 - PTHR24003,PTHR24003:SF102 - - - - - - - Cre07.g345850 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g8047.t1,Cre07.g345850.t1.1 - - - - - - - - - Cre17.g715300 PKD2 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 15 - - g17316.t1,Cre17.g715300.t1.1,PKD2 PF08016 PTHR10877,PTHR10877:SF44 - - - - - - - Cre08.g379300 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 18 - - g8930.t1 - - - - - - AT1G34630.1 - - Cre01.g016750 PSBS2 - 0 1 1.0 nan 0 1 1.0 nan C Y upregulated - - - g400.t1,Cre01.g016750.t1.1 - - - - K03542 - AT1G44575.1 NPQ4,PSBS Chlorophyll A-B binding family protein Cre12.g520300 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g12821.t1,Cre12.g520300.t1.1 - - - - - - - - - Cre14.g618600 MRP7 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 13 ABC transporter, multidrug resistance associated protein Related to AtMRP11, putative ABC transporter, MRP subfamilymembrane protein [PMID: 15710683] g14901.t2,MRP7, g14901.t3,MRP7, g14901.t1,Cre14.g618600.t1.1,MRP7 PF00664,PF00005 PTHR24223,PTHR24223:SF222 KOG0054 - - GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT2G07680.1 ATMRP11,MRP11 multidrug resistance-associated protein 11 Cre01.g036451 SMM2 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g819.t1,SMM2 - - - - - - - - - Cre13.g583287 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g14320.t1,Cre13.g583287.t1.1 - - - - - - - - - Cre06.g301650 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 3 - - g6979.t1,Cre06.g301650.t1.1 PF06838 PTHR11808,PTHR11808:SF33 - - - GO:0006520,GO:0030170 - - - Cre10.g425100 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 8 - - g10508.t1,Cre10.g425100.t1.1 PF00560 PTHR23155 - - - GO:0005515 AT1G61850.2 - phospholipases;galactolipases Cre16.g687700 CPY - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 17 - - g16334.t1,Cre16.g687700.t1.1,CPY - PTHR23125 - - - - - - - Cre09.g389245 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 7 - - g9636.t1,Cre02.g124200.t1.1 PF00226 PTHR24077 KOG0714 - - GO:0031072 AT4G28480.2 - DNAJ heat shock family protein Cre12.g548051 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g13591.t1,Cre12.g548033.t1.2 - - - - - - - - - Cre12.g548050 CYG32 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 3 Adenylate/guanylate cyclase Similar to guanylyl cyclase receptor [Bactrocera dorsalis] g13590.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre06.g290050 - 0 1 1.0 nan 0 1 1.0 nan SP n - 17 - - g6729.t1,Cre06.g290050.t1.1 - - - - - - - - - Cre07.g314150 ZDS1,ZDS - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 4 Zeta-carotene desaturase Zeta-carotene desaturase (carotene 7,8-desaturase), chloroplast precursor. Previously annotated as ZDS g7269.t1,Cre07.g314150.t1.1,ZDS PF01593 PTHR10742:SF6,PTHR10742 KOG0029 1.14.99.30 K00514 - AT3G04870.1 PDE181,SPC1,ZDS zeta-carotene desaturase Cre02.g079351 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g1449.t1 - - - - - - - - - Cre17.g696500 PHC19 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 Cell wall protein pherophorin-C19 Pherophorin-C19 (PHC19) [PMID: 16367971]; partial sequence similar to extracellular matrix protein (cell wall protein) pherophorin-C4 [Genbank entry DQ196110], which belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxy g16894.t1,PHC19 PF12499 - - - - - - - - Cre06.g289033 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g6708.t1,Cre06.g289033.t1.1 - - - - - - - - - Cre12.g499350 EFH7 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 12 - - g12593.t1,Cre12.g499350.t1.1,EFH7 PF00036 PTHR12294:SF1,PTHR12294 KOG2643 - - - AT4G32060.1 - calcium-binding EF hand family protein Cre14.g631800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g15226.t1,Cre14.g631800.t1.1 - - - - - - - - - Cre03.g144787 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 11 - - g2903.t1,Cre01.g057750.t1.1,Cre01.g057750.t1.2 PF00085 PTHR10438:SF47,PTHR10438 KOG0907 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT1G07700.3 - Thioredoxin superfamily protein Cre03.g188650 PLAP2,PLP2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 8 Plastid lipid associated protein Conserved expressed protein related to plastid lipid associated protein PAP. Putative PAP fibrillin - most similar to that of Arabidopsis, Medicago and rice. pfam04755, PAP_fibrillin, PAP_fibrillin. This family identifies a conserved region found in a num g3907.t1,Cre03.g188650.t1.1,PLP2 PF04755 - - - - GO:0005198,GO:0009507 AT3G26070.1 - Plastid-lipid associated protein PAP / fibrillin family protein Cre07.g324550 LDH1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g7497.t1,LDH1 PF02826,PF00389 PTHR10996,PTHR10996:SF17 KOG0069 1.1.1.- K00100 GO:0016616,GO:0048037,GO:0008152,GO:0051287 AT1G17745.1 PGDH D-3-phosphoglycerate dehydrogenase Cre02.g144050 ELG34 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 Exostosin-like glycosyltransferase Exostosin-like glycosyltransferases g2592.t1,ELG34, g2592.t2,Cre02.g144050.t1.1,ELG34 PF03016 PTHR11062,PTHR11062:SF18 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre03.g204752 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g4220.t1 PF03291 PTHR12189 - 2.1.1.56 K00565 GO:0006370 AT3G20650.2 - mRNA capping enzyme family protein Cre06.g307800 CYN49 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g7127.t1,Cre06.g307800.t1.1 - - - - - - AT4G17070.1 - peptidyl-prolyl cis-trans isomerases Cre13.g563700 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 16 - - g13870.t1 PF00400 PTHR22847:SF228,PTHR22847 KOG0315 - - - AT3G49660.1 - Transducin/WD40 repeat-like superfamily protein Cre03.g195250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 - - g4043.t1 PF08242 - - - - - - - - Cre12.g515426 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g12716.t1 - - - - - - - - - Cre07.g342850 DCC3,ODA5 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 - - g7928.t1,Cre07.g342850.t1.1,ODA5 - PTHR21694,PTHR21694:SF2 - - - - - - - Cre07.g331114 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g7704.t2,Cre07.g331114.t1.1, g7704.t1, g7704.t3 - - - - - - - - - Cre04.g233102 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g5069.t1,Cre32.g780850.t1.1 - - - - - - - - - Cre02.g141666 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g2725.t2,Cre15.g647300.t2.1, g2725.t1,Cre15.g647300.t1.1 - - - - - - - - - Cre11.g478400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g11877.t1 - - - - - - - - - Cre12.g536500 CGL10 - 0 4 1.0 1.0 0 4 1.0 1.0 C Y - 12 Conserved Sel1 repeat protein Conserved expressed protein with Sel1 repeats g13193.t1,Cre12.g536500.t1.1 PF08238 - - - - - AT5G05360.2 - - Cre10.g422419 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g10451.t1,Cre10.g422419.t1.1 - - - - - - - - - Cre09.g416100 DNJ11 - 0 1 1.0 nan 0 1 1.0 nan O n - - DnaJ-like protein DnaJ-like protein; probably cytosolic; similar to rice Q8S0V9, Xenopus Q7ZXQ8, and Arabidopsis Q9M2L3; contain J-domain (pfam00226) in the middle of the protein g10299.t1,Cre09.g416100.t1.1 PF00226,PF09320 PTHR24077,PTHR24077:SF17 - - K09518 GO:0031072 AT3G57340.1 - Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) Cre01.g048100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g1068.t1 - - - - - - - - - Cre01.g048102 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g1069.t1,Cre01.g048102.t1.1 - - - - - - - - - Cre17.g706250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g17116.t1 - PTHR19959:SF76,PTHR19959 - - - - AT5G37590.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre06.g302389 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6999.t1,Cre06.g302389.t1.1 - - - - - - - - - Cre06.g310150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7176.t2, g7176.t1,Cre06.g310150.t1.1 - - - - - - - - - Cre14.g614600 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g14808.t1,Cre14.g614600.t1.1 - - - - - - - - - Cre02.g088350 SNR3 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 Putative Golgi membrane protein, SNARE-associated Putative Golgi membrane protein, SNARE-associated. Previously annotated as DEG1A g1645.t1,SNR3 PF09335 - - - - - AT2G02370.1 - SNARE associated Golgi protein family Cre09.g386550 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 7 - - g9108.t1,Cre09.g386550.t1.1 PF01412 PTHR23180,PTHR23180:SF80 KOG0704 - K12492 GO:0008060,GO:0008270,GO:0032312 AT2G37550.1 AGD7,ASP1 ARF-GAP domain 7 Cre01.g015050 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g363.t1 - - KOG2117 - - - - - - Cre17.g698100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g16930.t1,Cre17.g698100.t1.1 PF05903 PTHR12378 - - - - AT2G25190.1 - PPPDE putative thiol peptidase family protein Cre03.g173400 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3576.t1 PF02841,PF02263 PTHR10751,PTHR10751:SF2 - - - GO:0003924,GO:0005525 AT5G46070.1 - Guanylate-binding family protein Cre03.g201950 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 16 - - g4283.t1,Cre03.g201950.t1.1 PF05548 - - - - - - - - Cre36.g759697 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - - - - g18367.t1,Cre05.g230250.t1.1,Cre05.g230250.t1.2 - - - - - - - - - Cre11.g467754 - 0 4 1.0 1.0 0 4 1.0 1.0 SP Y - 8 Solute carrier protein, UAA transporter family UAA transporter, with a specificity for UDP-N-acetylglucosamine. Conserved expressed protein of the solute carrier family; related to sugar nucleotide transporter g11683.t1,Cre22.g764050.t1.1,Cre22.g764050.t1.2 PF08449 PTHR11132 KOG1444 - - GO:0055085 AT1G76340.1 GONST3 golgi nucleotide sugar transporter 3 Cre12.g525000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g12923.t1,Cre12.g525000.t1.1 - - - - - - - - - Cre01.g059252 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g1254.t1,Cre23.g767250.t1.1 - - - - - - - - - Cre02.g078550 FAP210 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g1425.t1,Cre02.g078550.t1.1 - - - - - - - - - Cre02.g104300 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g2134.t1 - - - - - - - - - Cre03.g206450 - 0 1 1.0 nan 0 1 1.0 nan - n - 10 - - g4182.t1,Cre03.g206450.t1.1 - - - - - - - - - Cre03.g206452 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g4183.t1 PF10262 - - - - GO:0008430,GO:0045454 - - - Cre14.g633700 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g15278.t1,Cre14.g633700.t1.1 - - KOG4032 - - - - - - Cre11.g476000 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 14 - - g11823.t1,Cre11.g476000.t1.1 - - - - - - - - - Cre07.g321250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g7426.t1,Cre07.g321250.t1.1 - - - - - - - - - Cre10.g457450 - 0 1 1.0 nan 0 1 1.0 nan O n - 18 - - g11223.t1 PF09778 - KOG4621 - - - AT5G05930.1 ATGC1,GC1 guanylyl cyclase 1 Cre06.g296850 FAP81 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 13 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g6864.t1,Cre06.g296850.t1.1 - PTHR14128 - - - - - - - Cre16.g677700 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g16562.t1 PF05064 PTHR12084 KOG2196 - K14306 GO:0005643,GO:0017056 AT2G45000.1 EMB2766 structural constituent of nuclear pore Cre03.g144767 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g2902.t1,Cre01.g057700.t1.1,Cre01.g057700.t1.2 PF01902 - - - - - - - - Cre16.g689700 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 14 - - g16189.t1 PF02826 PTHR10996,PTHR10996:SF7 KOG0069 - - GO:0016616,GO:0048037 AT1G79870.1 - D-isomer specific 2-hydroxyacid dehydrogenase family protein Cre10.g421900 SRR27 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n downregulated 18 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g10439.t1,SRR27 PF06011,PF00530 PTHR19331,PTHR19331:SF16 - - - GO:0005044,GO:0016020 - - - Cre16.g673900 RPC3 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g16644.t1,RPC3 PF05645,PF08221 PTHR12949 KOG2587 2.7.7.6 K03023 GO:0003677,GO:0003899,GO:0006351 AT3G49000.1 - RNA polymerase III subunit RPC82 family protein Cre17.g718500 MMP1,GLE1 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 18 Matrix metalloproteinase, gamete lytic enzyme (G-lysin) Matrix Metalloprotease 1; also known as GLE (Gametic Lytic Enzyme), G-lysin (gi:399543); secreted enzyme expressed during gametogenesis that degrades the cell wall (PMID:11680823). In the peptidase M10A/M12B, matrixin/adamalysin family. Gametolysin invo g17389.t1,GLE1,MMP1 PF05548 - - - - - - - - Cre17.g733100 - 0 1 1.0 nan 0 1 1.0 nan SP n - 18 - - g17716.t1 - - KOG2748 - - - AT1G54970.1 ATPRP1,PRP1,RHS7 proline-rich protein 1 Cre16.g648200 CYP35,CYP744C1 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - Cytochrome P450, CYP3 superfamily Cytochrome P450, CYP3 superfamily. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP744 family has best BLAST hits to CYP5 family members (thromboxane A2 synthase in a g15688.t3,CYP35, g15688.t1,Cre16.g648200.t1.1,CYP35, g15688.t2,CYP35 PF00067 PTHR24301,PTHR24301:SF127 KOG0157, KOG0158 1.14.14.1 K07424 GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT3G53130.1 CYP97C1,LUT1 Cytochrome P450 superfamily protein Cre06.g298251 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g6899.t1 - - - - - - - - - Cre12.g485458 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12048.t1 - - - - - - - - - Cre08.g364501 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g8534.t1 - - - - - - - - - Cre02.g082000 AGE1 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 10 - - g1502.t1,Cre02.g082000.t1.1,AGE1 PF00730 PTHR10359,PTHR10359:SF1 - 3.2.2.- K03575 GO:0006284 AT4G12740.1 - HhH-GPD base excision DNA repair family protein Cre03.g172750 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 14 - - g3562.t1 PF01753 PTHR13244 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre13.g577800 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - - - g14197.t1 PF01926 PTHR11089:SF5,PTHR11089 - - - GO:0005525,GO:0005622 AT1G08410.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre06.g284350 CYCD3 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 D-type cyclin D-type cyclin homolog. Contains N terminal LXCXE motif that binds retinoblastoma proteins. Putative function in G1/S g6611.t1 PF00134,PF02984 PTHR10177,PTHR10177:SF76 KOG0656 - - GO:0005634 AT1G70210.1 ATCYCD1;1,CYCD1;1 CYCLIN D1;1 Cre03.g207502 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g4160.t1 PF01529 PTHR22883 KOG1313 - - GO:0008270 AT3G09320.1 - DHHC-type zinc finger family protein Cre07.g319650 FXL4 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 3 FixL-like PAS domain protein FixL like homolog 4 (FXL). PAS region shows high identity to Rhizobial FixL proteins. g7393.t1,FXL4 PF00989 PTHR10919:SF179,PTHR10919 - - - GO:0006355 - - - Cre05.g238374 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 16 - - g5496.t1 PF00097,PF01485 PTHR11685 - - - GO:0008270 AT5G60250.1 - zinc finger (C3HC4-type RING finger) family protein Cre13.g578350 MPA11 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 16 - - g14209.t1,Cre13.g578350.t1.1,MPA11 PF00149 PTHR22953 KOG1378 - - GO:0016787 AT3G07130.1 ATPAP15,PAP15 purple acid phosphatase 15 Cre09.g392542 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g9727.t1,Cre02.g128300.t1.1 PF07496,PF00856 PTHR22884,PTHR22884:SF123 KOG1082 - - GO:0008270,GO:0005515 AT1G77300.1 ASHH2,CCR1,EFS,SDG8 histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) Cre02.g103650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g2118.t1 - - - - - - - - - Cre09.g391986 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9712.t1,Cre02.g127550.t1.1,Cre02.g127550.t1.2 PF01764 - - - - GO:0004806,GO:0006629 AT1G06800.1 PLA-I{gamma}1 alpha/beta-Hydrolases superfamily protein Cre07.g318300 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 12 - - g7358.t1 PF00027 PTHR11635:SF87,PTHR11635 - - - - - - - Cre01.g019250 SNE1 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 10 Putative dTDP-glucose 4-6-dehydratase Putative dTDP-glucose 4-6-dehydratase, an NAD dependent epimerase/dehydratase may be a GDP-mannose 3,5-epimerase. Homolog to Arabidopsis GDP-mannose-3\',5\'-epimerase (GME) (AT5G28840; PMID: 16366586). Previously annotated as SNE1 g451.t1,Cre01.g019250.t1.1,SNE1 PF01370 PTHR10366,PTHR10366:SF35 KOG1429 5.1.3.-,5.1.3.18 K10046 GO:0003824,GO:0044237,GO:0050662 AT5G28840.1 GME GDP-D-mannose 3\',5\'-epimerase Cre12.g502800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g12514.t1,Cre12.g502800.t1.1 PF00400,PF08149 PTHR14085 KOG1272 - - - AT3G10530.1 - Transducin/WD40 repeat-like superfamily protein Cre02.g095400 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g1937.t1, g1937.t2,Cre02.g095400.t1.1 PF04427 PTHR13634 KOG2971 - - - AT3G15460.1 - Ribosomal RNA processing Brix domain protein Cre13.g579400 ERM8 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 13 ERD4-related membrane protein Transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration) g14234.t1,ERM8 PF02714 PTHR13018,PTHR13018:SF19 KOG1134 - - GO:0016020 AT4G02900.1 - ERD (early-responsive to dehydration stress) family protein Cre10.g450150 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 7 - - g11064.t1,Cre10.g450150.t1.1 - - - - - - - - - Cre16.g680500 EFH10 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g16498.t1,EFH10 - PTHR10891 KOG0027 - - - AT3G50360.1 ATCEN2,CEN1,CEN2 centrin2 Cre03.g170450 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g3510.t1,Cre03.g170450.t1.1 - - - - - - - - - Cre12.g513000 GTR17 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 Glycosyltransferase Glycosyltransferase, possible beta-1,3-galactosyletransferase g12668.t1,GTR17 PF01762 PTHR11214 KOG2287 - - GO:0006486,GO:0008378,GO:0016020 AT1G26810.1 GALT1 galactosyltransferase1 Cre14.g631701 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g15224.t1,Cre14.g631700.t1.3 - - - - - - - - - Cre06.g280500 PPP23 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g6525.t1,PPP23, g6525.t2,PPP23 PF00035 - KOG2133 - - GO:0003725,GO:0005622 AT5G01270.2, AT4G21670.1 ATCPL2,CPL2, ATCPL1,CPL1,FRY2 carboxyl-terminal domain (ctd) phosphatase-like 2, C-terminal domain phosphatase-like 1 Cre06.g273350 NAT17 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g6132.t1,Cre06.g273350.t1.1,NAT17 PF00583 - - - - GO:0008080,GO:0008152 - - - Cre06.g285750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g6641.t1 - - - - - - - - - Cre17.g746247 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 10 - - g18041.t1 PF00856 PTHR22884,PTHR22884:SF18 KOG1079 2.1.1.43 K11430 GO:0005515 AT4G02020.1 EZA1,SDG10,SWN SET domain-containing protein Cre06.g277650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g6222.t1,Cre06.g277650.t1.1 PF01062 - - - - - AT3G61320.1 - Bestrophin-like protein Cre08.g367850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g8618.t1 - - - - - - - - - Cre01.g030500 CYG58 - 0 16 1.0 1.0 0 16 1.0 1.0 O n - 15 - - g691.t1,Cre01.g030500.t1.1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre17.g728864 OPR105 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g17616.t1,Cre17.g728864.t1.1 - - - - - - - - - Cre07.g323250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g7467.t1 - - - - - - - - - Cre17.g725150 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g17536.t1,Cre17.g725150.t1.1 PF00664,PF00005 PTHR24221,PTHR24221:SF96 KOG0055 - - GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT3G62150.1 PGP21 P-glycoprotein 21 Cre12.g509250 EYE2 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 12 Thioredoxin superfamily protein required for eyespot assembly EYE2 is a thioredoxin superfamily protein required for eyespot assembly; EYE2 contains a LysM domain; the conserved thioredoxin active site cys residues are not required for eyespot assembly, suggestive of a chaperonin-type function; PMID: 11454753; Genba g12367.t1,EYE2 PF00085,PF01476 PTHR18929 - - - GO:0045454,GO:0016998 AT4G04610.1 APR,APR1,ATAPR1,PRH19 APS reductase 1 Cre06.g267600 LCYE1,LEC1,LCYE - 0 1 1.0 nan 0 1 1.0 nan C Y upregulated 4 Lycopene epsilon cyclase Lycopene epsilon cyclase (CrtL-e) (LEC) [PMID: 16143839], chloroplast precursor g6005.t2,LEC1,LCYE, g6005.t1,Cre06.g267600.t1.1,LEC1,LCYE PF05834 PTHR13789:SF96,PTHR13789 - 1.14.-.- K06444 GO:0016117,GO:0016705 AT5G57030.1 LUT2 Lycopene beta/epsilon cyclase protein Cre09.g404100 CLV3 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 2 - - g9177.t1,Cre09.g404100.t1.1,CLV3 PF00571,PF00654 PTHR11689:SF45,PTHR11689 KOG0474 - - GO:0005515,GO:0005247,GO:0006821,GO:0016020,GO:0055085 AT5G26240.1 ATCLC-D,CLC-D chloride channel D Cre06.g298450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g6904.t1,Cre06.g298450.t1.1 - - KOG2992 - - - - - - Cre08.g365750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g8570.t1 - PTHR24412:SF248,PTHR24412 - - - - - - - Cre09.g409750 CAX2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 CAX family cation antiporter, membrane protein CAX family of Cation antiporters, membrane protein. Putative Ca2+/H+ antiporter [PMID: 15710683], related to fungi and plants Ca2+/H+ antiporters (CAX); related to yeast VCX1 (or Manganese resistance 1) g10153.t1,CAX2 PF01699 - KOG1397 - - GO:0016021,GO:0055085 AT3G13320.1 atcax2,CAX2 cation exchanger 2 Cre10.g451200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g11088.t1,Cre10.g451200.t1.1 - - - - - - - - - Cre16.g683850 GDPD1,GDP1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 10 Glycerophosphoryl diester phosphodiesterase family protein Glycerophosphodiester phosphodiesterase. Previously annotated as GDPD1 g16425.t1,GDP1,GDPD1 PF03009 PTHR23344 KOG2258 - - GO:0006071,GO:0008889 AT5G08030.1 - PLC-like phosphodiesterases superfamily protein Cre12.g512350 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 10 - - g12299.t1,Cre12.g512350.t1.1 - - - - - - - - - Cre03.g146727 - 0 5 1.0 1.0 0 5 1.0 1.0 M n downregulated 16 - - g3001.t1 PF09118,PF07250 - KOG2992 - - - AT1G67290.1 - glyoxal oxidase-related protein Cre01.g005900 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g142.t1 PF04379 PTHR14289:SF10,PTHR14289 - - K10290 - AT1G06110.1 SKIP16 SKP1/ASK-interacting protein 16 Cre02.g113450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 18 - - g2337.t1 PF00249 PTHR10641,PTHR10641:SF30 - - - - AT3G53200.1 AtMYB27,MYB27 myb domain protein 27 Cre08.g359450 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8419.t1,Cre08.g359450.t1.1 - PTHR23132 - - - - - - - Cre02.g118200 - 0 9 1.0 1.0 0 9 1.0 1.0 M n upregulated 10 - - g2453.t1,Cre02.g118200.t1.1 PF01940 PTHR13353 KOG4491 - - GO:0016021 AT5G19930.1 - Protein of unknown function DUF92, transmembrane Cre09.g388652 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 16 - - g9619.t1,Cre02.g123401.t1.1,Cre02.g123401.t1.2 - - - - - - - - - Cre17.g713150 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g17268.t1, g17268.t2 PF02469 - - - - - - - - Cre01.g028900 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 - - g659.t1 - PTHR10366,PTHR10366:SF1 - - - - - - - Cre06.g282900 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6579.t1,Cre06.g282900.t1.1 PF09755 PTHR15276 - - K09288 - - - - Cre12.g517800 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 16 - - g12768.t1,Cre12.g517800.t1.1 PF00097 PTHR23012,PTHR23012:SF41 - - - - AT1G50440.1 - RING/FYVE/PHD zinc finger superfamily protein Cre01.g051250 DLC4,DLE1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar outer dynein arm 18 kDa light chain LC4 Outer dynein arm light chain 4. Contains calcium-binding EF-hand. Previously annotated as DLC4 g1135.t1,Cre01.g051250.t1.1,DLC4 PF00036 PTHR10891 KOG0027 - - - AT5G37780.1 ACAM-1,CAM1,TCH1 calmodulin 1 Cre07.g329500 SUB1 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 16 Secreted protease and protease inhibitor Secreted protein, contains two Kazal-type serine protease inhibitor domains (IPR002350) and a protease S8 (subtilase) domain that it probably regulates; the latter is most related to bacterial extracellular proteases g7665.t1,SUB1, g7665.t2,Cre07.g329500.t1.1,SUB1 PF07648,PF00082 PTHR10795,PTHR10795:SF32 - 3.4.21.- K01362 GO:0004252,GO:0006508 AT5G19660.1 ATS1P,ATSBT6.1,S1P SITE-1 protease Cre10.g432770 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g10678.t1,Cre10.g432770.t1.1 - - - - - - - - - Cre06.g272550 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g6115.t1,Cre06.g272550.t1.1 PF00075,PF01693 PTHR10642 KOG3752 - - GO:0003676,GO:0004523 AT1G24090.1 - RNase H family protein Cre13.g604250 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g14578.t1 PF01822 - KOG0108 - - - - - - Cre02.g090050 FAP285,FAP170 - 0 13 1.0 1.0 0 13 1.0 1.0 SP n - 15 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400]. This gene model consolidates two v3 gene models: FAP170 and FAP285; unclear if this gene model should b g1682.t1,FAP285 - - - - - - - - - Cre09.g403450 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g9193.t1,Cre09.g403450.t1.1 PF00023 - - - - GO:0005515 AT5G07270.1 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana Cre03.g192750 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g3988.t1 - PTHR11584:SF165,PTHR11584 - - - - - - - Cre02.g081750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated - - - g1497.t1 - - - - - - - - - Cre16.g686622 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g16832.t1,Cre01.g070700.t1.1 - - - - - - - - - Cre12.g501752 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g12540.t2 - - - - - - - - - Cre16.g685451 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g15546.t1 - - - - - - - - - Cre10.g432800 RPSA,RPSa - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Ribosomal protein Sa, component of cytosolic 80S ribosome and 40S small subunit Cytosolic 80S ribosomal protein Sa; Cytosolic 40S small ribosomal subunit protein Sa g10679.t1,Cre10.g432800.t1.1,RPSa PF00318 PTHR11489 KOG0830 - - GO:0003735,GO:0006412,GO:0015935,GO:0005622,GO:0005840 AT3G04770.2 RPSAb 40s ribosomal protein SA B Cre09.g386125 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9087.t1,Cre29.g777641.t1.1,Cre29.g777641.t1.2 - - - - - - - - - Cre01.g004500 LEU1L - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Isopropylmalate dehydratase, large subunit 3-isopropylmalate dehydratase (EC 4.2.1.33), large subunit; isopropylmalate isomerase; similarity to rice IPMI (GenBank XP_463952); predicted as plastidic by Target-P and by homology g110.t1,Cre01.g004500.t1.1,LEU1L PF00330 PTHR11670,PTHR11670:SF16 KOG0454 4.2.1.33,4.2.1.35 K01703 GO:0008152 AT4G13430.1 ATLEUC1,IIL1 isopropyl malate isomerase large subunit 1 Cre17.g716400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 1 - - g17341.t1,Cre17.g716400.t1.1 - PTHR13182 KOG2785 - - - AT4G31420.2 - Zinc finger protein 622 Cre02.g115600 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - - - g2393.t1 PF00924 - - - - GO:0016020,GO:0055085 - - - Cre15.g641850 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 17 - - g15475.t1,Cre15.g641850.t1.1 - - - - - - - - - Cre03.g171461 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g3534.t1 PF04055,PF06969 PTHR13932 - 1.3.99.22 K02495 GO:0003824,GO:0051536,GO:0004109,GO:0005737,GO:0006779,GO:0055114 AT5G63290.1 - Radical SAM superfamily protein Cre16.g665900 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g16071.t1 - - - - - - - - - Cre06.g264750 HTA14 - 0 1 1.0 nan 0 1 1.0 nan C n - - Histone H2A Replication-linked Histone H2A g5947.t1,Cre06.g264750.t1.1,HTA14 PF00125 PTHR23430 KOG1756 - K11251 GO:0003677 AT1G51060.1 HTA10 histone H2A 10 Cre10.g447800 - 0 11 1.0 1.0 0 11 1.0 1.0 O n upregulated 2 - - g11013.t1,Cre10.g447800.t1.1 PF05731 PTHR14202 KOG4465 - - GO:0003723,GO:0030529 - - - Cre13.g572600 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 10 - - g14081.t1,Cre13.g572600.t1.1 PF00856 PTHR12197:SF80,PTHR12197 - - - GO:0005515 - - - Cre02.g093650 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 12 - - g1769.t1,Cre02.g093650.t1.1 PF00355 - - - - GO:0016491,GO:0051537,GO:0055114 AT1G71500.1 - Rieske (2Fe-2S) domain-containing protein Cre07.g326700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated - - - g7598.t1 - - - - - - - - - Cre01.g025850 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 17 - - g594.t1,Cre01.g025850.t1.1 PF05153 PTHR12588 KOG1573 1.13.99.1 K00469 GO:0005506,GO:0005737,GO:0019310,GO:0050113,GO:0055114 AT1G14520.1 MIOX1 myo-inositol oxygenase 1 Cre06.g262750 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g5902.t1 - - - - - - - - - Cre12.g527200 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 11 - - g12988.t1,Cre12.g527200.t1.1 - - - - - - - - - Cre09.g397253 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9859.t1,Cre02.g134100.t1.1 PF01565 PTHR11748:SF29,PTHR11748 - - - GO:0016491,GO:0050660 AT5G44390.1 - FAD-binding Berberine family protein Cre17.g747747 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g18071.t1,Cre20.g757650.t1.1 PF00097 PTHR23012 - - - - AT2G02960.1 - RING/FYVE/PHD zinc finger superfamily protein Cre01.g052250 TRXx,TRX1 - 0 1 1.0 nan 0 1 1.0 nan C Y - 6 Thioredoxin x Thioredoxin x, chloroplast precursor [PMID: 12753911]. Chloroplastic localization confirmed experimentally in Arabidopsis. TRXx could be involved in oxidative stress responses as it is the most efficient chloroplastic TRX for reduction of 2-cys Peroxiredo g1158.t1,Cre01.g052250.t1.1,TRX1 PF00085 PTHR10438:SF82,PTHR10438 KOG0910 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT1G50320.1 ATHX,ATX,THX thioredoxin X Cre02.g112550 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 15 - - g2318.t1,Cre02.g112550.t1.1 PF01061,PF00005 PTHR19241,PTHR19241:SF100 - - - GO:0016020,GO:0005524,GO:0016887 AT2G37010.1 ATNAP12,NAP12 non-intrinsic ABC protein 12 Cre03.g193576 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g4005.t1 - PTHR11584:SF147,PTHR11584 - - - - - - - Cre06.g258650 PGM6 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 Phosphoglycerate mutase-like protein Phosphoglycerate/bisphosphoglycerate mutase family protein g5816.t1,Cre06.g258650.t1.1,PGM6 PF00300 - - - - - AT2G17280.1 - Phosphoglycerate mutase family protein Cre07.g328750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g7645.t1,Cre07.g328750.t1.1 - - - - - - - - - Cre06.g283000 CGLD39 - 0 1 1.0 nan 0 1 1.0 nan M Y - 11 - - g6581.t1 - - KOG0487 - - - - - - Cre01.g011500 RPN11 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 26S proteasome regulatory subunit 26S proteasome regulatory complex, lid subcomplex, non-ATPase subunit RPN11 (26S PROTEASOME-ASSOCIATED PAD1 HOMOLOG) g287.t1,Cre01.g011500.t1.1,RPN11 PF01398 PTHR10410:SF5,PTHR10410 KOG1555 - K03030 GO:0005515 AT5G23540.1 - Mov34/MPN/PAD-1 family protein Cre12.g554150 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g13450.t1,Cre12.g554150.t1.1 - - - - - - - - - Cre01.g012850 KCN8 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - - - - g317.t1,Cre01.g012850.t1.1,KCN8 PF00520 PTHR10217:SF394,PTHR10217 KOG4412 - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT5G37500.1 GORK gated outwardly-rectifying K+ channel Cre12.g538600 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g13243.t1,Cre12.g538600.t1.1 PF00041 - - - - GO:0005515 - - - Cre06.g283450 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g6591.t1,Cre06.g283450.t1.1 - - - - - - - - - Cre07.g352650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8202.t1,Cre07.g352650.t1.1 - PTHR23139,PTHR23139:SF9 KOG0147 - - - AT4G36690.1 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor Cre14.g625300 CAX3 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - CAX family cation antiporter, membrane protein Pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein related to AtCAX10 [PMID: 15710683]. This is a family of sodium/calcium exchanger integral membrane proteins. g15063.t1,CAX3 PF01699 PTHR12266 KOG2399 - K13754 GO:0016021,GO:0055085 AT3G14070.1 ATCCX3,CAX9,CCX3 cation exchanger 9 Cre02.g096455 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g1959.t1,Cre02.g096455.t1.1 - - - - - - - - - Cre01.g029350 C1d-87,FAP297 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g668.t1,Cre01.g029350.t1.1,C1d-87 - - - - - - - - - Cre06.g278219 SSA6 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 Predicted protein Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA) g6361.t1,Cre13.g599250.t1.1,Cre13.g599250.t1.2,SSA6 - PTHR21567,PTHR21567:SF22 - - - - AT2G20190.1 ATCLASP,CLASP CLIP-associated protein Cre06.g278214 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 11 - - g6356.t1,Cre13.g598950.t1.1 - - - - - - - - - Cre01.g008500 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g215.t1,Cre01.g008500.t1.1 PF00023 PTHR24198 KOG4412 - - GO:0005515 AT3G04710.3 - ankyrin repeat family protein Cre06.g278213 LHCA6 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Light-harvesting protein of photosystem I - g6355.t1,Cre13.g598900.t1.1,Cre13.g598900.t1.2,LHCA6 PF00504 PTHR21649 - - K08910 GO:0009765,GO:0016020 AT3G47470.1 CAB4,LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 Cre06.g278210 GPM1 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Phosphoglucomutase Phosphoglucomutase, plastid form; glucose phosphomutase (EC 5.4.2.2). The Chlamydomonas sucrose biosynthesis pathway, including this gene, was used in an example of metabolic network analysis by Nikoloski et al. 2008 [PMID: 18682254]. Two splice variants g6352.t1,Cre13.g598750.t1.1,GPM1 PF02878,PF02879,PF00408,PF02880 PTHR22573,PTHR22573:SF5 KOG0625 5.4.2.2 K01835 GO:0005975,GO:0016868 AT5G51820.1 ATPGMP,PGM,PGM1,STF1 phosphoglucomutase Cre06.g278211 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 - - g6353.t1,Cre13.g598800.t1.1,Cre13.g598800.t1.2 - - - - - - - - - Cre17.g729650 MPA15 - 0 6 1.0 1.0 0 6 1.0 1.0 M n upregulated 2 - - g17634.t1,Cre17.g729650.t1.1,MPA15 - - - - - - AT5G58200.2 - Calcineurin-like metallo-phosphoesterase superfamily protein Cre11.g467638 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g11568.t1 PF00560 PTHR24420 - - - GO:0005515 AT5G61240.1 - Leucine-rich repeat (LRR) family protein Cre06.g263800 SEE2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 2 - - g5927.t1,SEE2 - PTHR10887:SF27,PTHR10887 KOG1801 - - - AT4G15570.1 MAA3 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre01.g038850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 - - g869.t1 PF00076,PF02037 PTHR24012:SF260,PTHR24012 KOG4211 - - GO:0003676 AT4G34110.1 ATPAB2,PAB2,PABP2 poly(A) binding protein 2 Cre11.g467632 - 0 17 1.0 1.0 0 17 1.0 1.0 SP n - 18 - - g11562.t1,Cre18.g747050.t1.1,Cre18.g747050.t1.2 - - - - - - - - - Cre11.g467630 AMI2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 Amidase Amidase-like; high similarity to the amidase domain of Toc64 (Oep64) from Pisum sativum (AAF62870), Arabidopsis thaliana (NP_188424) and Physcomitrella patens (AAS47584, AAS47585); however lacks tetratricopeptide (TPR) motifs at C-termini; TargetP predict g11560.t2,Cre18.g747150.t3.1,AMI2, g11560.t1,Cre18.g747150.t2.1,AMI2, g11560.t3,Cre18.g747150.t1.1,AMI2 PF01425 PTHR11895,PTHR11895:SF6 KOG1211 - - GO:0016884 AT1G08980.1 AMI1,ATAMI1,ATTOC64-I,TOC64-I amidase 1 Cre11.g467631 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - - - - g11561.t2,Cre18.g747100.t1.1, g11561.t1,Cre18.g747100.t2.1 PF00246 PTHR11705:SF3,PTHR11705 - - - GO:0004181,GO:0006508,GO:0008270 AT5G42320.1 - Zn-dependent exopeptidases superfamily protein Cre11.g467636 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g11566.t1,Cre18.g746850.t1.1 PF00069 PTHR23257:SF357,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G26970.1 - Protein kinase superfamily protein Cre11.g467637 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g11567.t1,Cre18.g746800.t1.1,Cre18.g746800.t1.2 PF00627 PTHR10175 - - - GO:0005515 - - - Cre11.g467634 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g11564.t1,Cre18.g746950.t1.1 PF00069 PTHR23257:SF357,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G26970.1 - Protein kinase superfamily protein Cre11.g467635 MOT22 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g11565.t1,Cre18.g746900.t1.1,MOT22 PF00339 - - - - - - - - Cre01.g039101 TNP6 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g874.t1,Cre01.g039100.t1.3,TNP6 PF07282 PTHR23257,PTHR23257:SF99 - - - - - - - Cre09.g409500 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 8 - - g10147.t1,Cre09.g409500.t1.1 PF01918 PTHR13516 KOG2567 - - GO:0003676 AT3G07030.1 - Alba DNA/RNA-binding protein Cre09.g392208 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 17 - - g9718.t1,Cre02.g127852.t1.1,Cre02.g127852.t1.2 - - - - - - - - - Cre13.g568150 SMM45 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g13980.t1,SMM45 PF01795 PTHR11265 KOG2782 - - GO:0008168 AT5G10910.1 - mraW methylase family protein Cre03.g148400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g3018.t1,Cre03.g148400.t1.1 - - - - - - - - - Cre09.g395251 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g9804.t1,Cre02.g131650.t1.1 - - - - - - - - - Cre09.g395250 FAP36 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 7 Flagellar Associated Protein Alanine rich protein, found in flagellar proteome [PMID: 15998802]; MOT5; identified by comparative genomics as being present only in organisms having motile (MOT) cilia g9386.t1 PF11527 PTHR21532 - - - - - - - Cre10.g464900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 18 - - g11391.t1 PF04916 PTHR12370 KOG3774 - - - - - - Cre12.g557350 FAO9 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g13382.t1,Cre12.g557350.t1.1,FAO9 PF01266,PF00355 PTHR13847:SF20,PTHR13847 - - - GO:0016491,GO:0051537,GO:0055114 AT4G03280.1 PETC,PGR1 photosynthetic electron transfer C Cre03.g153800 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g3133.t1 PF01650 PTHR12000 KOG1349 2.6.-.- K05290 GO:0004197,GO:0006508 AT1G08750.1 - Peptidase C13 family Cre06.g291050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g6746.t2, g6746.t1 - - - - - - - - - Cre03.g158850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g3252.t1 PF12248,PF00754 - KOG4276 - - GO:0007155 AT2G30600.1 - BTB/POZ domain-containing protein Cre02.g113600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g2340.t1,Cre02.g113600.t1.1 PF00069 PTHR24349,PTHR24349:SF121 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre13.g565050 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g13901.t1 PF07173 - - - - - AT4G37900.1 - Protein of unknown function (duplicated DUF1399) Cre06.g290900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g6743.t1 PF06294 PTHR12509 - - - - - - - Cre10.g437650 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g10783.t1 - - - - - - - - - Cre05.g242700 SUB9 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g5296.t1,SUB9 PF00082,PF02225 PTHR10795,PTHR10795:SF112 - - - GO:0004252,GO:0006508 AT5G67360.1 ARA12 Subtilase family protein Cre16.g674739 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g16724.t1,Cre01.g066050.t1.1,Cre01.g066050.t1.2, g16724.t2,Cre01.g066050.t2.1 PF12430,PF12537 PTHR15948 KOG2417 - - - AT4G27630.2 GTG2 GPCR-type G protein 2 Cre01.g049600 CGLD22 - 0 1 1.0 nan 0 1 1.0 nan C Y - 12 Expressed protein similar to ATP synthase I Conserved expressed protein with similarity to ATP synthase, F0 complex, subunit I g1100.t1,Cre01.g049600.t1.1 - - - - K02116 - AT2G31040.1 - ATP synthase protein I -related Cre03.g145747 SHK7 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Chorismate synthase Putative chorismate synthase (EC 4.2.3.5); predicted by Target-P to be mitochondrial, but by homology to be plastidic. Catalyzes the seventh and final step of the shikimate pathway (PMID: 12242393; PMID: 16963634). Previously annotated as SHKH1 g2952.t1,Cre01.g059900.t1.1,Cre01.g059900.t1.2,SHK7 PF01264 PTHR21085 KOG4492 4.2.3.5 K01736 GO:0004107,GO:0009073 AT1G48850.1 EMB1144 chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative Cre17.g712400 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 17 - - g17251.t1,Cre17.g712400.t1.1 PF03741 - - - - GO:0016021 AT5G12130.1 ATTERC,PDE149 integral membrane TerC family protein Cre07.g332950 SFA1,SFA - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 SF-assemblin SF-assemblin has been identified as the filament-forming component of the striated microtubule-associated fibers (distal striated fiber) connecting the basal bodies. GI:15528533, PMID: 11896198. Previously annotated as SFA g7745.t1,Cre07.g332950.t1.1,SFA,SFA1 PF06705 - - - - - - - - Cre08.g378450 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g8909.t1 PF00320 - - - - GO:0003700,GO:0006355,GO:0008270,GO:0043565 - - - Cre02.g090600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g1693.t1,Cre02.g090600.t1.1 PF00400 PTHR22652 - - - - AT4G30840.1 - Transducin/WD40 repeat-like superfamily protein Cre06.g250300 FLA24,DHC1b,DHC1B - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 14 Cytoplasmic dynein 1b heavy chain (not an inner arm dynein) Homologue of mammalian cytoplasmic dynein 2 heavy chain. Motor for retrograde intraflagellar transport. Not an inner arm dynein. Upregulated upon deflagellation by nearly 8-fold. Previously annotated as DHC1b g5606.t1,Cre06.g250300.t1.1,DHC1b,FLA24 PF08385,PF08393,PF07728,PF03028 PTHR10676,PTHR10676:SF34 KOG3595 - K10414 GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 - - - Cre02.g120250 CDPK7,STT7 - 0 1 1.0 nan 0 1 1.0 nan C n - 18 Calcium/calmodulin-dependent protein kinase Chloroplast protein kinase required for LHCII phosphorylation and state transition [PMID: 12624266]. Identified in the eyespot phosphoproteome by Wagner et al. 2008 [PMID: 18065559]. g2497.t1,CDPK7,STT7, g2497.t2,CDPK7,STT7 PF00069 PTHR24361:SF235,PTHR24361 KOG0594 - - GO:0004672,GO:0005524,GO:0006468 AT1G68830.1 STN7 STT7 homolog STN7 Cre01.g003500 MSH2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g83.t1,Cre01.g003500.t1.1 - - - - - - AT5G54440.1 AtTRS130,CLUB CLUB Cre01.g003508 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 15 - - g84.t1,Cre01.g003519.t1.2 - - - - - - - - - Cre13.g607500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g14646.t1,Cre13.g607500.t1.1 PF03730,PF02735,PF02037,PF03731 PTHR12604:SF10,PTHR12604 KOG2327 - K10884 GO:0003677,GO:0004003,GO:0006303,GO:0003676 AT1G16970.1 ATKU70,KU70 KU70 homolog Cre01.g002451 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 6 - - g59.t1 PF00168 PTHR10774 - - - GO:0005515 AT5G17980.1 - C2 calcium/lipid-binding plant phosphoribosyltransferase family protein Cre09.g406250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 5 - - g10071.t1 PF01753 PTHR13244 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre09.g391578 - 0 1 1.0 nan 0 1 1.0 nan M n - 3 - - g9699.t1,Cre02.g127050.t1.1 PF05116 - - - - - - - - Cre03.g146447 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g2987.t1,Cre01.g061600.t1.1 PF01344 PTHR23244:SF16,PTHR23244 - - - GO:0005515 AT3G07720.1 - Galactose oxidase/kelch repeat superfamily protein Cre17.g730100 RSE1,RSEP1 - 0 5 1.0 1.0 0 5 1.0 1.0 M n downregulated 16 Intramembrane metalloprotease Intramembrane metalloprotease related to site-2 protease; contains M50 domain, with HExxH motif embedded in transmembrane helix; homologous to bacterial RseP/YaeL/PsoIVFB involved in transmembrane signaling; could be organelle-targeted, based on presence g17644.t1,RSE1 PF02163 - - - - GO:0004222,GO:0006508 AT1G05140.1 - Peptidase M50 family protein Cre05.g244700 PHX10,P4H-1 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5240.t1,P4H-1,PHX10 PF03171 PTHR10869 - - - GO:0016491 AT3G28480.1 - Oxoglutarate/iron-dependent oxygenase Cre05.g244701 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 18 - - g5241.t1 - - - - - - - - - Cre06.g285250 LHCBM6 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 6 Chloropyll a/b binding protein of LHCII type I, chloroplast precursor Chloropyll a-b binding protein of LHCII type I, chloroplast precursor g6631.t1,Cre06.g285250.t1.1 PF00504 PTHR21649 - - K08913 GO:0009765,GO:0016020 AT2G05100.1 LHCB2,LHCB2.1 photosystem II light harvesting complex gene 2.1 Cre12.g556550 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g13401.t1 - - - - - - - - - Cre01.g022500 MME5 - 0 1 1.0 nan 0 1 1.0 nan M n - 6 NADP malic enzyme Malic Enzyme, NADP-dependent; malate dehydrogenase, decarboxylating (EC 1.1.1.40); based on similarity to mouse NADP malic enzyme (GenBank AAH80660); likely mitochondrial targeting, based on Target-P prediction and homology g519.t1,Cre01.g022500.t1.1 PF00390,PF03949 PTHR23406:SF2,PTHR23406 KOG1257 - - GO:0016616,GO:0051287 AT1G79750.1 ATNADP-ME4,NADP-ME4 NADP-malic enzyme 4 Cre07.g350400 PIN3 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 Peptidyl-prolyl cis-trans isomerase, parvulin-type Peptidyl-prolyl cis-trans isomerase, parvulin-type, Ppi-C type (EC 5.2.1.8). Rhodanese domain; most similar to AtPIN3 (At5g19370) [PMID: 15051864, PMID:15047905] g8151.t1,PIN3 PF00639,PF00581 PTHR10657:SF4,PTHR10657 KOG3258 - - GO:0016853 AT5G19370.1 - rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein Cre01.g048550 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated 5 - - g1078.t1 - - - - - - - - - Cre03.g157000 ELG1 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 8 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g3205.t1,ELG1 PF03016,PF07974 PTHR11062,PTHR11062:SF14 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre14.g614250 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g14801.t1,Cre14.g614250.t1.1 PF07019 - KOG4455 - - - AT5G49540.1 - Rab5-interacting family protein Cre11.g478240 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g11874.t1 PF01399 PTHR10855:SF2,PTHR10855 KOG1497 - K12178 GO:0005515 AT5G42970.1 ATS4,COP14,COP8,CSN4,EMB134,FUS4,FUS8 Proteasome component (PCI) domain protein Cre15.g639850 OPR96 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 7 - - g15405.t1,Cre15.g639850.t1.1 - - - - - - - - - Cre12.g532151 ERM7 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - - - - g13093.t1,ERM7 PF02714 PTHR13018,PTHR13018:SF18 KOG1134 - - GO:0016020 AT4G04340.1 - ERD (early-responsive to dehydration stress) family protein Cre10.g452000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g11103.t1,Cre10.g452000.t1.1 PF04752 PTHR12192 KOG3182 - K07232 - AT4G31290.1 - ChaC-like family protein Cre10.g459050 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g11259.t1 PF02897,PF00326 PTHR11757 - - - GO:0004252,GO:0006508,GO:0008236 AT1G50380.1 - Prolyl oligopeptidase family protein Cre01.g045600 SRR12 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 6 Speract/scavenger receptor, transmembrane glycoprotein Speract/scavenger receptor cysteine-rich (SRCR) family protein, transmembrane glycoprotein. Homolog of yeast ATG20 gene [PMID: 18670193] g1020.t1,SRR12 PF00069 PTHR24363 KOG0595 - - GO:0004672,GO:0005524,GO:0006468 AT1G50240.2 FU Protein kinase family protein with ARM repeat domain Cre17.g711457 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 - - g17229.t1,Cre17.g711457.t1.1 - - - - - - - - - Cre04.g230732 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 10 - - g5044.t1 PF00685 PTHR26392,PTHR26392:SF98 KOG3704 2.8.2.33 K08106 GO:0008146 - - - Cre09.g400150 - 0 6 1.0 1.0 0 6 1.0 1.0 C n upregulated 5 - - g9266.t1 PF01344 PTHR23244,PTHR23244:SF127 - - - GO:0005515 AT5G27630.1 ACBP5 acyl-CoA binding protein 5 Cre10.g449950 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 9 - - g11060.t1,Cre10.g449950.t1.1 - - - - - - AT3G33530.1 - Transducin family protein / WD-40 repeat family protein Cre06.g303100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g7016.t1,Cre06.g303100.t1.1 PF00069 PTHR24362,PTHR24362:SF143 - - - GO:0004672,GO:0005524,GO:0006468 AT5G35980.2 YAK1 yeast YAK1-related gene 1 Cre12.g525970 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g12944.t1 PF01265 PTHR11584,PTHR11584:SF47 - - - GO:0004408,GO:0005739 - - - Cre01.g043600 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g975.t1 - - - - - - - - - Cre10.g448600 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 10 - - g11029.t1,Cre10.g448600.t1.1 PF12309 PTHR20956 - - - - - - - Cre13.g572450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 4 - - g14078.t1,Cre13.g572450.t1.1 PF00072 PTHR10919:SF419,PTHR10919 - - - GO:0000156,GO:0000160,GO:0006355 AT2G01760.1 ARR14,RR14 response regulator 14 Cre10.g427200 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10554.t1, g10554.t2 - - - - - - - - - Cre16.g651500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g15759.t1,Cre16.g651500.t1.1 - PTHR15350 KOG3250 - K12180 - AT1G02090.1 ATCSN7,COP15,CSN7,FUS5 Proteasome component (PCI) domain protein Cre16.g675958 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g16131.t1,Cre01.g063550.t1.1,Cre01.g063550.t1.2 PF02990 PTHR10766,PTHR10766:SF14 KOG1277 - - GO:0016021 AT2G01970.1 - Endomembrane protein 70 protein family Cre01.g047265 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 7 - - g1051.t1 PF12499 - KOG0487 - - - - - - Cre16.g675950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g16598.t2, g16598.t1 - - - - - - - - - Cre14.g622050 ELG28 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 10 Exostosin-like glycosyltransferase Seems to belong to the family of exostosin-like glycosyltransferases g14987.t1,ELG28 PF03016 PTHR11062,PTHR11062:SF12 - - - GO:0016020 AT1G27440.1 ATGUT1,GUT2,IRX10 Exostosin family protein Cre03.g159950 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g3275.t1 PF08159 PTHR14927 KOG2321 - - GO:0005634 AT3G56990.1 EDA7 embryo sac development arrest 7 Cre04.g219500 DNJ30 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 DnaJ-like protein DnaJ-like protein; contains J-domain (pfam00226) g4783.t1 PF00226 PTHR22904 - - - GO:0031072 AT5G12430.1 - Heat shock protein DnaJ with tetratricopeptide repeat Cre10.g453750 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g11140.t1 - - - - - - - - - Cre06.g292350 AOC4 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 Amino acid carrier Amino acid carrier 4; belongs to APC (Amino acid Polyamine organoCation) family g6774.t1,Cre06.g292350.t1.1,AOC4 PF00324 PTHR11785,PTHR11785:SF78 KOG1287 - - GO:0006810,GO:0016020,GO:0055085,GO:0003333,GO:0015171 AT1G31830.1 - Amino acid permease family protein Cre01.g036950 CBA1 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 5 - - g829.t1,Cre01.g036950.t1.1,CBA1 PF02654 - - - - GO:0008818,GO:0009236 - - - Cre17.g731561 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17678.t1 PF02493 - - - - - - - - Cre16.g677550 CYA15 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n downregulated 18 - - g16565.t1,CYA15 - PTHR24790,PTHR24790:SF7 - - - - - - - Cre03.g161301 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g3305.t1,Cre03.g161300.t1.3 - - - - - - - - - Cre01.g042950 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g961.t1,Cre01.g042950.t1.1 PF05255 PTHR13180 KOG3393 - - - AT1G36980.1 - - Cre17.g700600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g16989.t1 PF00651 PTHR24413 - - - GO:0005515 AT1G01640.1 - BTB/POZ domain-containing protein Cre08.g358850 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g8406.t1,Cre08.g358850.t1.1 - - - - - - - - - Cre06.g257500 FTT2 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 14-3-3 protein Fourteen-three-three (FTT) protein, homolog of Vigna angularis accession BAB47119. Found in the flagellar proteome [PMID: 15998802], same as centriole protein POC8 [PMID: 15964273]. In addition to its presence in the flagellar and centriole proteomes, thi g5788.t1,Cre06.g257500.t1.1,FTT2 PF00244 PTHR18860 KOG0841 - - GO:0019904 AT3G02520.1 GF14 NU,GRF7 general regulatory factor 7 Cre07.g352000 - 0 1 1.0 nan 0 1 1.0 nan SP n - 17 - - g8188.t1,Cre07.g352000.t1.1 - - - - - - - - - Cre08.g363000 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g8501.t1,Cre08.g363000.t1.1 - - - - - - - - - Cre06.g308950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 - - g7149.t1,Cre06.g308950.t1.1 PF02453 PTHR10994:SF27,PTHR10994 KOG1792 - - GO:0005783 AT4G23630.1 BTI1,RTNLB1 VIRB2-interacting protein 1 Cre01.g008976 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g226.t1 - - - - - - - - - Cre05.g236400 NAT13 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 16 - - g5436.t1,NAT13 PF00583 - KOG3223 - - GO:0008080,GO:0008152 AT1G67120.1 - ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding Cre10.g426550 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g10539.t1,Cre10.g426550.t1.1 PF02373 - - - - - - - - Cre17.g742450 GST15 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g17956.t1,GST15 PF02798,PF00043 PTHR11571,PTHR11571:SF2 KOG1695 2.5.1.18 K00799 GO:0005515 AT2G30870.1 ATGSTF10,ATGSTF4,ERD13,GSTF10 glutathione S-transferase PHI 10 Cre03.g178700 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 10 - - g3700.t1,Cre03.g178700.t1.1 - - - - - - AT1G50890.1 - ARM repeat superfamily protein Cre02.g093350 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g1762.t2, g1762.t1 - - - - - - - - - Cre03.g170550 POC4 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 11 - - g3512.t1,POC4 - - - - - - - - - Cre06.g251683 - 0 1 1.0 nan 0 1 1.0 nan SP n - 2 - - g5636.t1 - - - - - - - - - Cre03.g202000 KIN4-2 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 9 - - g4282.t1,Cre03.g202000.t1.1,KIN4-2 PF00225 PTHR24115,PTHR24115:SF174 KOG0244 - K10395 GO:0003777,GO:0005524,GO:0007018 AT5G47820.1 FRA1 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre16.g657900 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g15896.t1,Cre16.g657900.t1.1 - - - - - - - - - Cre08.g382900 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 9 - - g9016.t1 - - - - - - - - - Cre01.g037600 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g843.t1 - PTHR19353,PTHR19353:SF7 - - - - - - - Cre17.g709000 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 16 - - g17175.t1,Cre17.g709000.t1.1 - - - - - - - - - Cre12.g516500 CUL2 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 Ubiquitin ligase SCF complex subunit Cullin - g12740.t1,CUL2 PF00888,PF10557 PTHR11932,PTHR11932:SF53 KOG2167 - K10609 GO:0006511,GO:0031461,GO:0031625 AT5G46210.1 ATCUL4,CUL4 cullin4 Cre06.g298000 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g6893.t1 - PTHR22870 - - - - - - - Cre16.g673650 CP26,LHCB5 - 0 1 1.0 nan 0 1 1.0 nan C Y - 6 Minor chlorophyll a/b binding protein of photosystem II Minor chlorophyll a-b binding protein of photosystem II. Included among genes whose expression levels changed significantly during hydrogen production in sulfur-deficient cells; Nguyen et al. 2008 [PMID: 18708561]. Protein product also known as CP26 g16648.t1,CP26,LHCB5 PF00504 PTHR21649 - - K08916 GO:0009765,GO:0016020 AT4G10340.1 LHCB5 light harvesting complex of photosystem II 5 Cre01.g034550 FAP109 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g780.t1,Cre01.g034550.t1.1 - - - - - - - - - Cre03.g166650 HEL15,CGLD3 - 0 1 1.0 nan 0 1 1.0 nan C Y - 1 DEAD/DEAH-box DNA/RNA helicase DEAD/DEAH box DNA/RNA helicase. Green-lineage-and-diatoms conserved protein with DEAD/DEAH box helicase domain and proline rich domain. Previously annotated CGLD3 g3420.t1,HEL15 PF00271,PF00270 PTHR24031,PTHR24031:SF136 KOG0330 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G59990.1 - DEA(D/H)-box RNA helicase family protein Cre12.g495952 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g12142.t1 - - - - - - - - - Cre12.g495955 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g12145.t1 PF00078 PTHR13078,PTHR13078:SF14 - - - GO:0003723,GO:0003964,GO:0006278 - - - Cre01.g046650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g1012.t1,Cre01.g046650.t1.1 - - - - - - - - - Cre01.g040550 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g909.t1 - - - - - - - - - Cre02.g143527 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g2836.t1, g2836.t2 - - - - - - - - - Cre16.g692550 MSH4 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - - DNA mismatch repair protein, MutS homolog DNA mismatch repair protein, MutS homolog. Forms a complex with MutL (see MLH genes). Orthologous to AT4G17380, involved in the early steps of meiotic recombination g15627.t1,MSH4 PF00488,PF05192 PTHR11361 - - - GO:0005524,GO:0006298,GO:0030983 AT4G17380.1 ATMSH4,MSH4 MUTS-like protein 4 Cre03.g191850 SDR8 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 - - g3971.t1,SDR8 PF00106 PTHR24322,PTHR24322:SF67 KOG0725 1.1.-.- K11147 GO:0008152,GO:0016491 AT4G05530.1 IBR1,SDRA indole-3-butyric acid response 1 Cre05.g237750 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g5470.t1,Cre05.g237750.t1.1 PF03980 - - - - - - - - Cre15.g635250 - 0 1 1.0 nan 0 1 1.0 nan M n - 3 - - g15320.t1 - PTHR13247 KOG4412 - - - - - - Cre17.g741900 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - - - - g17943.t2, g17943.t1 PF00069 PTHR23257,PTHR23257:SF275 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre06.g258300 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g5806.t1 - - - - - - - - - Cre10.g444600 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g10931.t1 - - - - - - - - - Cre07.g349100 HEL39 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g8120.t1,HEL39 PF00271,PF07717,PF04408 PTHR18934 KOG0923 3.6.4.13 K12813 GO:0003676,GO:0004386,GO:0005524 AT1G32490.1 EMB2733,ESP3 RNA helicase family protein Cre03.g160550 MTP4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 Cation efflux transporter, membrane protein Putative Mn transporter, CDF family, related to plant Mn transporters, PMID: 15710683. Cis-acting regulatory elements were characterized by Fei et al. 2009 [PMID: 19351705]. g3289.t1 PF01545 PTHR11562 KOG1485 - - GO:0006812,GO:0008324,GO:0016021,GO:0055085 AT1G79520.2 - Cation efflux family protein Cre09.g402145 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g10010.t1,Cre02.g139850.t1.1,Cre02.g139850.t1.2 - - - - - - - - - Cre14.g623150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g15019.t1 - - - - - - - - - Cre04.g231810 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g5056.t1,Cre32.g781400.t1.1 - - - - - - AT3G58800.1 - - Cre16.g684350 HAR1 - 0 1 1.0 nan 0 1 1.0 nan M n - 6 - - g16411.t1,Cre16.g684350.t1.1,HAR1 PF03446 PTHR22981,PTHR22981:SF20 KOG0409 - - GO:0016491,GO:0004616,GO:0006098,GO:0055114 AT3G25530.1 ATGHBDH,GHBDH,GLYR1,GR1 glyoxylate reductase 1 Cre16.g664400 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g16040.t1,Cre16.g664400.t1.1 - - - - - - - - - Cre05.g235450 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g5414.t1,Cre05.g235450.t1.1 PF00069 PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre07.g319850 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g7397.t1,Cre07.g319850.t1.1 PF00571,PF07714 PTHR23257 KOG0192 - - GO:0005515,GO:0004672,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre02.g110400 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g2266.t1,Cre02.g110400.t1.1 PF01399 PTHR12732 KOG2688 - - GO:0005515 AT2G19560.1 EER5 proteasome family protein Cre02.g086100 CGL40 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 8 Predicted protein Conserved expressed protein of unidentified function; some similarity to Arabidopsis protein gi|18402865|ref|NP_564561.1| - Also a domain COG0741: Soluble lytic murein transglycosylase and related regulatory proteins in Rickettsia g1595.t1,Cre02.g086100.t1.1 - - - - - - AT1G49975.1 - - Cre16.g681657 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g16147.t1,Cre01.g064250.t1.1 PF01344 PTHR23244 KOG1003 - - GO:0005515 AT1G74150.1 - Galactose oxidase/kelch repeat superfamily protein Cre05.g244550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g5243.t1 PF00069 PTHR11795:SF312,PTHR11795 - - - GO:0004672,GO:0005524,GO:0006468 AT2G40580.1 - Protein kinase superfamily protein Cre01.g035600 MSC2 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - Mechanosensitive ion channel Sequence similarity with bacterial (E. coli) mechanosensitive ion channel MscS g802.t1,MSC2 PF00924 - - - - GO:0016020,GO:0055085 AT4G00290.1 - Mechanosensitive ion channel protein Cre02.g083550 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g1538.t1 PF01494 PTHR13789,PTHR13789:SF72 KOG2614 - - GO:0004497,GO:0055114 - - - Cre07.g326300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g7588.t1,Cre07.g326300.t1.1 - - - - - - - - - Cre02.g145200 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 - - g2564.t1 PF05292 PTHR14153 KOG3018 4.1.1.9 K01578 GO:0006633,GO:0050080 AT4G04320.1 - malonyl-CoA decarboxylase family protein Cre03.g205361 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g4414.t1,Cre19.g754100.t1.1,Cre19.g754100.t1.2 - - - - - - - - - Cre09.g390541 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 12 - - g9671.t1,Cre02.g125950.t1.1,Cre02.g125950.t1.2 PF12146,PF00756 PTHR11614:SF27,PTHR11614 KOG1455 - - - AT2G47630.1 - alpha/beta-Hydrolases superfamily protein Cre02.g101250 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g2066.t1,Cre02.g101250.t1.1 - PTHR23125 - - - - AT4G33210.1 SLOMO F-box family protein Cre06.g307100 AKC2 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - - ABC1/COQ8 Ser/Thr kinase Conserved protein related to ABC1/COQ8 putative ser/thr kinase; similar to ABC1-transporter protein family; these proteins have a nuclear or mitochondrial subcellular location in eukaryotes; contains a LysM-domain which is found in a variety of enzymes in g7113.t1 PF03109,PF01476 PTHR10566 KOG1235 - K08869 GO:0016998 AT4G24810.2 - Protein kinase superfamily protein Cre06.g273150 RRM4 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g6128.t1,Cre06.g273150.t1.1,RRM4 PF01728 - - - - GO:0003676,GO:0008168,GO:0032259 - - - Cre11.g479650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 1 - - g11907.t1,Cre11.g479650.t1.1 PF04564,PF07719 PTHR22904,PTHR22904:SF171 KOG4642 6.3.2.19 K09561 GO:0000151,GO:0004842,GO:0016567 AT3G07370.1 ATCHIP,CHIP carboxyl terminus of HSC70-interacting protein Cre04.g220576 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g4812.t1 - - - - - - - - - Cre14.g632759 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g15247.t1 PF00291 PTHR10314,PTHR10314:SF17 KOG1251 - - GO:0003824,GO:0008152,GO:0030170 AT4G11640.1 ATSR,SR serine racemase Cre03.g194600 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g4029.t1 PF00069 PTHR11439,PTHR11439:SF18 - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre14.g632750 - 0 13 1.0 1.0 0 13 1.0 1.0 SP n downregulated 18 - - g15246.t1 PF00069 PTHR23257 KOG1187 - - GO:0004672,GO:0005524,GO:0006468 AT3G18810.1 - Protein kinase superfamily protein Cre16.g687000 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - - - - g16352.t1 PF06963 PTHR11660:SF42,PTHR11660 KOG2601 - - GO:0005381,GO:0016021,GO:0034755 AT2G38460.1 ATIREG1,FPN1,IREG1 iron regulated 1 Cre08.g376800 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 5 - - g8875.t1 PF03144,PF11987,PF00009 PTHR23115:SF41,PTHR23115 - - - GO:0005525,GO:0003924 AT4G11160.1 - Translation initiation factor 2, small GTP-binding protein Cre16.g679650 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated - - - g16517.t1 PF00307 PTHR19961:SF19,PTHR19961 - - - GO:0005515 AT5G48460.1 - Actin binding Calponin homology (CH) domain-containing protein Cre03.g171700 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 16 - - g3539.t1 PF07993 PTHR11011,PTHR11011:SF8 - 1.2.1.- K13356 - AT3G44550.1 FAR5 fatty acid reductase 5 Cre05.g236183 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g5430.t1 - - - - - - - - - Cre16.g671400 ARS1 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 7 Periplasmic arylsulfatase Periplasmic arylsulfatase 1 [PMID: 3339089], The nearly identical gene ARS2 is nearby in the genomic sequence, in inverted orientation g16291.t1,Cre16.g671400.t1.1 PF00884 PTHR10342:SF2,PTHR10342 KOG3867 3.1.6.14 K01137 GO:0008152,GO:0008484 - - - Cre10.g429850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g10618.t1,Cre10.g429850.t1.1 - - - - - - - - - Cre14.g627350 XYI3 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 16 - - g15106.t1,XYI3 PF01925 PTHR14255 - - - GO:0016021 AT2G25737.1 - Sulfite exporter TauE/SafE family protein Cre09.g410800 NRT2.2,NAR4 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - High affinity nitrate transporter High affinity nitrate transporter (system II). Previously annotated as NAR4. Needs Nar2 to function in vitro [PMID: 11289304] g10175.t1,Cre09.g410800.t1.1,NAR4 PF07690 PTHR24003,PTHR24003:SF2 KOG2533 - - GO:0016021,GO:0055085 AT1G12940.1 ATNRT2.5,NRT2.5 nitrate transporter2.5 Cre02.g084500 CGL134 - 0 1 1.0 nan 0 1 1.0 nan SP Y - - - - g1559.t1 PF01753 PTHR13244 - - - GO:0008270 - - - Cre13.g606900 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g14632.t1,Cre13.g606900.t1.1 - - - - - - - - - Cre03.g146307 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g2980.t1,Cre01.g061250.t1.1,Cre01.g061250.t1.2 - PTHR23244:SF16,PTHR23244 - - - - AT3G07720.1 - Galactose oxidase/kelch repeat superfamily protein Cre03.g171300 GYX1 - 0 1 1.0 nan 0 1 1.0 nan O n - - Glycolate oxidase Probable glycolate oxidase, (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); based on similarity to spinach glycolate oxidase (Swissprot P05414); PMID: 19214701 g3530.t1,Cre03.g171300.t1.1,GYX1 PF01070 PTHR10578 KOG0538 1.1.3.15 K11517 GO:0016491 AT4G18360.1 - Aldolase-type TIM barrel family protein Cre16.g668400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 16 - - g16270.t1,Cre16.g668400.t1.1 PF07534 PTHR23354 - - - - AT4G39870.1 - TLD-domain containing nucleolar protein Cre01.g026150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 2 - - g601.t1 PF01432 - - - - GO:0004222,GO:0006508 - - - Cre10.g418900 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g10370.t1,Cre10.g418900.t1.1 PF00069 PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT5G04870.1 ATCPK1,CPK1 calcium dependent protein kinase 1 Cre02.g141586 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2721.t1 PF00439 - - - - GO:0005515 - - - Cre06.g289200 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g6712.t1 - - - - - - - - - Cre06.g289800 CAM12 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g6724.t1,Cre06.g289800.t1.1,CAM12 - PTHR10891:SF224,PTHR10891 - - - - - - - Cre15.g643740 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g15506.t1,Cre15.g643740.t1.1 - - - - - - - - - Cre03.g207200 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g4165.t1 PF00650 PTHR10174 - - - - AT3G46450.1 - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Cre07.g320400 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 2 - - g7409.t1,Cre07.g320400.t1.1 PF00504 - - - - - AT3G22840.1 ELIP,ELIP1 Chlorophyll A-B binding family protein Cre04.g222550 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g4856.t1 - - KOG2809 - - - - - - Cre12.g510450 RPS28 - 0 1 1.0 nan 0 1 1.0 nan - n - 12 Ribosomal protein S28, component of cytosolic 80S ribosome and 40S small subunit Cytosolic 80S ribosomal protein S28; Cytosolic 40S small ribosomal subunit protein S28 g12340.t1,Cre12.g510450.t1.1 PF01200 PTHR10769 KOG3502 - K02979 GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT3G10090.1 - Nucleic acid-binding, OB-fold-like protein Cre16.g677765 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 13 - - g16751.t1,Cre01.g067150.t1.1,Cre01.g067150.t1.2 PF00207 PTHR13062:SF1,PTHR13062 - - - GO:0004866 - - - Cre16.g694704 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g15579.t1 PF00856 PTHR12197 - - - GO:0005515 AT1G26760.1 ATXR1,SDG35 SET domain protein 35 Cre12.g559800 GST10 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g13323.t1,Cre12.g559800.t1.1,GST10 PF01124 PTHR10250 - 2.5.1.18 K00799 - AT1G65820.1 - microsomal glutathione s-transferase, putative Cre16.g694700 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g15577.t1,Cre16.g694700.t1.1 - - - - - - - - - Cre16.g694703 - 0 4 1.0 1.0 0 4 1.0 1.0 O Y - 8 - - g15578.t1 - PTHR12383:SF6,PTHR12383 KOG0171 - - - AT2G31140.1 - Peptidase S24/S26A/S26B/S26C family protein Cre06.g295600 RME1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g6842.t1,Cre06.g295600.t1.1,RME1 PF05063 PTHR12829 - 2.1.1.62 K05925 GO:0006139,GO:0008168 AT4G10760.1 EMB1706,MTA mRNAadenosine methylase Cre16.g673000 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g16664.t1,Cre16.g673000.t1.1 PF03649 - - - K02069 - AT2G37330.1 ALS3 aluminum sensitive 3 Cre01.g052500 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 8 - - g1163.t1 - - - - - - - - - Cre14.g626000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 17 - - g15078.t1 PF03547 - - - - GO:0016021,GO:0055085 - - - Cre01.g015150 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 - - g366.t1,Cre01.g015150.t1.1 - - - - - - - - - Cre07.g312817 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g7238.t1 - - - - - - - - - Cre02.g081950 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 18 - - g1501.t1 PF00069 PTHR24347,PTHR24347:SF121 - - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre17.g735900 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 9 - - g17802.t1 - - - - - - - - - Cre02.g082900 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g1523.t1 PF01733 PTHR10332,PTHR10332:SF3 - - - GO:0005337,GO:0006810,GO:0016020 AT1G02630.1 - Nucleoside transporter family protein Cre10.g447350 SEC23B - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 8 COP-II coat subunit Expressed Protein. Similar to Sec23 component of COP-II vesicle coat complex involved in ER-to-Golgi transport. Part of Sec23/24 sub-complex. g11003.t1,Cre10.g447350.t1.1 PF04810,PF04811 PTHR11141 - - - GO:0006886,GO:0006888,GO:0008270,GO:0030127 AT4G01810.1 - Sec23/Sec24 protein transport family protein Cre09.g393506 HCP3 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 10 Hybrid-cluster protein Prismane/CO dehydrogenase family g9756.t1,Cre02.g129500.t1.1,HCP3 PF03063 - - - - GO:0005737,GO:0016491,GO:0055114 - - - Cre01.g018400 IPK - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 17 - - g434.t1,IPK PF05770 PTHR14217 - 2.7.1.134,2.7.1.159 K00913 GO:0000287,GO:0005524,GO:0005622,GO:0032957,GO:0035300,GO:0047325 AT4G33770.1 - Inositol 1,3,4-trisphosphate 5/6-kinase family protein Cre10.g449400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g11049.t1 - - - - - - - - - Cre01.g010650 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 8 - - g265.t1,Cre01.g010650.t1.1 - - - - - - - - - Cre08.g361950 FAL10 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - Similar to Flagellar Associated Protein FAP72 Similar to Flagellar Associated Protein FAP72 that is found in the flagellar proteome [PMID: 15998802]. Overlaps with FAP72 gene model in v3 g8474.t1,FAL10, g8474.t2,FAL10 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre13.g580100 - 0 1 1.0 nan 0 1 1.0 nan - n - 10 - - g14252.t1,Cre13.g580100.t1.1 - - - - - - - - - Cre12.g541352 LIP1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - Triacylglycerol lipase - g13786.t1,Cre27.g774250.t1.1,LIP1, g13786.t2,Cre27.g774250.t2.1,LIP1 PF04083 PTHR11005 KOG2624 - - GO:0006629 AT1G73920.1 - alpha/beta-Hydrolases superfamily protein Cre12.g502100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g12531.t1 PF08743 - - - - - - - - Cre17.g701000 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g16997.t1,Cre17.g701000.t1.1 - - - - - - - - - Cre06.g296950 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 7 - - g6870.t1 - - - - - - AT1G05380.1 - Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein Cre02.g094650 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 15 - - g1790.t1,Cre02.g094650.t1.1 PF01926,PF01018 PTHR11702:SF3,PTHR11702 - - K03979 GO:0000287,GO:0003924,GO:0005525,GO:0005622 AT1G07615.1 - GTP-binding protein Obg/CgtA Cre01.g032400 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 - - g733.t1,Cre01.g032400.t1.1 - - - - - - - - - Cre03.g144687 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g2898.t1,Cre60.g792300.t1.1 - PTHR12983,PTHR12983:SF1 - - - - AT3G26730.1 - RING/U-box superfamily protein Cre02.g107900 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g2212.t1,Cre02.g107900.t1.1 - - - - - - - - - Cre09.g396050 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g9368.t1 PF04884 PTHR12770,PTHR12770:SF3 KOG4249 - - - AT2G23470.1 RUS4 Protein of unknown function, DUF647 Cre02.g098100 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g1995.t1,Cre02.g098100.t1.1 PF00097 - - - - - AT2G32950.1 ATCOP1,COP1,DET340,EMB168,FUS1 Transducin/WD40 repeat-like superfamily protein Cre09.g403950 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 16 - - g9180.t1,Cre09.g403950.t1.1 PF00069 PTHR24349:SF127,PTHR24349 - - - GO:0004672,GO:0005524,GO:0006468 AT5G47750.1 D6PKL2,PK5 D6 protein kinase like 2 Cre09.g395500 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 - - g9380.t1,Cre09.g395500.t1.1 - PTHR16216,PTHR16216:SF2 - - - - - - - Cre12.g552250 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g13493.t1 - - - - - - - - - Cre08.g368350 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 11 - - g8633.t1 - - - - - - - - - Cre06.g294550 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g6818.t1,Cre06.g294550.t1.1 PF05684 - - - - - AT5G24000.1 - Protein of unknown function (DUF819) Cre12.g544802 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g13665.t1 - PTHR12544,PTHR12544:SF9 - - - GO:0004359,GO:0006541 - - - Cre06.g280200 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 - - g6516.t1 PF06881 - - - - GO:0005634,GO:0006355,GO:0016021 AT2G42780.1 - - Cre12.g488100 UPF3 - 0 1 1.0 nan 0 1 1.0 nan O n - - UPF3 regulator of nonsense transcripts, NMD protein Putative ortholog of Saccharomyces cerevisiae Upf3 and Caenorhabditis elegans SMG-4; interacts with UPF2. Forms a surveillance complex with UPF1 and UPF2 g12225.t1,Cre12.g488100.t1.1,UPF3 PF03467 PTHR13112 - - K14328 - AT1G33980.1 ATUPF3,UPF3 Smg-4/UPF3 family protein Cre12.g517100 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g12753.t1 PF02431 - - - - GO:0016872,GO:0042398 AT1G53520.1 - Chalcone-flavanone isomerase family protein Cre14.g610400 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g14712.t1,Cre14.g610400.t1.1 - - - - - - - - - Cre06.g299600 ZRT4,ZIP6 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 Zinc/iron transporter Very weak similarity to homologs; appears as CrZIP6 in PMID: 15710683; PMID: 16766055 g6929.t1,Cre06.g299600.t1.1,ZIP6 PF02535 PTHR11040 - - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 AT5G62160.1 AtZIP12,ZIP12 zinc transporter 12 precursor Cre10.g450050 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 - - g11062.t1 - - - - - - - - - Cre01.g056331 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g1246.t1,Cre23.g767650.t1.1,Cre23.g767650.t1.2 PF01965 PTHR11019,PTHR11019:SF4 KOG2764 - K03152 - AT4G34020.1 - Class I glutamine amidotransferase-like superfamily protein Cre02.g097300 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g1980.t1, g1980.t2 - - - - - - AT1G16520.1 - - Cre02.g097900 AST3 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Aspartate aminotransferase Putative aspartate aminotransferase (EC 2.6.1.1); predicted by Target-P as mitochondrial; predicted as plastidic by homology, Found in proteomic survey of the mitochondrion g1991.t1,Cre02.g097900.t1.1,AST3 PF00155 PTHR11879 KOG1411 2.6.1.1 K00813 GO:0006520,GO:0008483,GO:0009058,GO:0016769,GO:0030170 AT4G31990.1 AAT3,ASP5,ATAAT1 aspartate aminotransferase 5 Cre17.g707650 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g17144.t1 PF00069 PTHR24343,PTHR24343:SF122 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT5G63650.1 SNRK2-5,SNRK2.5,SRK2H SNF1-related protein kinase 2.5 Cre16.g660951 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - - - - g15962.t1 - - - - - - - - - Cre09.g402601 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g9210.t1,Cre09.g402550.t1.3 - - - - - - - - - Cre09.g402600 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 2 - - g9209.t1 - - - - - - - - - Cre01.g006000 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g144.t1 - - - - - - - - - Cre07.g336450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g7830.t1,Cre07.g336450.t1.1 - - - - - - - - - Cre09.g401550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g9233.t1 - - - - - - - - - Cre09.g401551 BHD1 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 15 - - g9234.t1,Cre09.g401500.t1.3,BHD1 - - - - - - - - - Cre09.g401552 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g9994.t1, g9994.t2 PF01753 PTHR13244 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre13.g584901 - 0 13 1.0 1.0 0 13 1.0 1.0 SP n - 10 - - g14357.t1,Cre13.g584900.t1.3 PF09773 PTHR21274 - - - - - - - Cre07.g323350 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g7470.t1,Cre07.g323350.t1.1 - - - - - - - - - Cre06.g276200 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g6191.t1, g6191.t2 - - - - - - - - - Cre16.g647901 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g15682.t1 - - - - - - - - - Cre06.g282200 SNF7,VPS32 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated - Subunit of the ESCRT-III complex, SNF homolog Expressed Protein. Similar to SNF7, a SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes). Previously annotated as SNF7, but now included in VPS serie g6563.t1,Cre06.g282200.t1.1,SNF7,VPS32 PF03357 PTHR22761 KOG1656 - K12194 GO:0015031 AT4G29160.1 SNF7.1 SNF7 family protein Cre01.g023787 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 2 - - g548.t1 PF00005 PTHR19211:SF15,PTHR19211 KOG2355 - - GO:0005524,GO:0016887 AT5G60790.1 ATGCN1,GCN1 ABC transporter family protein Cre16.g690700 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g15672.t1 - - - - - - - - - Cre16.g690702 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g15673.t1 - - - - - - - - - Cre06.g273050 CGLD10 - 0 1 1.0 nan 0 1 1.0 nan C Y - 6 Transcriptional regulator-like protein Conserved protein, related to SET domain transcriptional regulator in rice g6126.t1,Cre06.g273050.t1.1 - - - - - - AT1G26761.1 - Arabinanase/levansucrase/invertase Cre03.g149150 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g3033.t1,Cre03.g149150.t1.1 - - - - - - - - - Cre03.g187700 HEL19 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g3888.t1,HEL19 PF00271,PF00270 PTHR24031:SF169,PTHR24031 - - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT5G08110.1 - nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases Cre01.g025551 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 3 - - g586.t1,Cre01.g025550.t1.2 - - - - - - - - - Cre01.g057061 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g1248.t1,Cre23.g767550.t1.1,Cre23.g767550.t1.2 - - - - - - - - - Cre02.g087200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g1618.t1 - - KOG4462 - - - AT2G41960.1 - - Cre17.g737351 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17836.t1,Cre17.g737351.t1.1, g17836.t2 - PTHR26393,PTHR26393:SF466 - - - - AT2G42800.1 AtRLP29,RLP29 receptor like protein 29 Cre17.g745897 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g18034.t1 - - - - - - - - - Cre09.g400600 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g9256.t1 - - - - - - - - - Cre07.g325350 KIN4-3,KIN10-1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g7515.t1,KIN10-1,KIN4-3 PF00225 PTHR24115 - - - GO:0003777,GO:0005524,GO:0007018 AT2G28620.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre10.g460800 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g11297.t1,Cre10.g460800.t1.1 PF00069 PTHR24347,PTHR24347:SF65 - - - GO:0004672,GO:0005524,GO:0006468 AT1G08650.1 ATPPCK1,PPCK1 phosphoenolpyruvate carboxylase kinase 1 Cre03.g176700 CPL4,MRPS29 - 0 3 1.0 1.0 0 3 1.0 1.0 M Y - 15 Putative mitochondrial ribosomal protein S29, imported to mitochondria, hypothetical protein; was CPL4 Putative mitochondrial ribosomal protein S29 g3651.t1,MRPS29 PF10236 - KOG3928 - - - AT1G16870.1 - mitochondrial 28S ribosomal protein S29-related Cre06.g265300 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g5958.t1,Cre06.g265300.t1.1 - - - - - - - - - Cre04.g227350 CCR4 - 0 1 1.0 nan 0 1 1.0 nan O n - - NOT-complex component Belongs to the CNOT2/3/5 family of transcription regulation complexes. g4974.t1,CCR4 PF04065,PF04153 PTHR23326 KOG2150 - K12580 GO:0005634,GO:0006355,GO:0030528 AT5G18230.2 - transcription regulator NOT2/NOT3/NOT5 family protein Cre03.g155750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 5 - - g3177.t1 PF12499 - KOG0487 - - - - - - Cre01.g024800 - 0 12 1.0 1.0 0 12 1.0 1.0 SP n - - - - g570.t1 PF00069 PTHR11612,PTHR11612:SF57 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre02.g111108 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g2283.t1,Cre02.g111108.t1.1 - - - - - - - - - Cre06.g259401 SMM16 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g5831.t1,SMM16 PF08241 PTHR10108,PTHR10108:SF275 - - - GO:0008152,GO:0008168 AT1G69523.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre16.g688863 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g16852.t1,Cre01.g071559.t1.1,Cre01.g071559.t1.2 PF00646 PTHR23125,PTHR23125:SF114 - - - GO:0005515 AT2G25490.1 EBF1,FBL6 EIN3-binding F box protein 1 Cre10.g465350 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g11402.t1,Cre10.g465350.t1.1 - - - - - - - - - Cre01.g055500 - 0 1 1.0 nan 0 1 1.0 nan M n - 18 - - g1242.t1 - - - - - - - - - Cre06.g292400 SOUL5 - 0 3 1.0 1.0 0 3 1.0 1.0 C Y - - - - g6775.t1 PF10184 - - - - - AT2G46100.1 - Nuclear transport factor 2 (NTF2) family protein Cre10.g433850 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 16 - - g10701.t1 - - - - - - - - - Cre10.g458700 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 12 - - g11252.t1,Cre10.g458700.t1.1, g11252.t2 PF07719 PTHR22904 - - - - AT4G12400.2 - stress-inducible protein, putative Cre03.g152250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 - - g3098.t1 - - - - - - - - - Cre06.g309850 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g7170.t1, g7170.t2 - - - - - - - - - Cre17.g710100 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g17198.t1 PF00400,PF08154 PTHR19855 KOG0313 - - - AT5G15550.1 - Transducin/WD40 repeat-like superfamily protein Cre03.g161850 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g3316.t1 - - - - - - - - - Cre07.g357900 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 7 - - g8323.t1,Cre07.g357900.t1.1 PF00262 PTHR11073 KOG0675 - K08054 GO:0005509 AT5G61790.1 ATCNX1,CNX1 calnexin 1 Cre08.g369740 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g8665.t1, g8665.t2 - - - - - - - - - Cre01.g018650 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g439.t1 PF01342 PTHR14955,PTHR14955:SF5 - - - GO:0003677,GO:0005634 AT1G04020.2 ATBARD1,BARD1,ROW1 breast cancer associated RING 1 Cre10.g439700 CGL28 - 0 1 1.0 nan 0 1 1.0 nan O Y - - RNA binding protein Conserved expressed putative RNA binding protein g10826.t1,Cre10.g439700.t1.1 PF00076 PTHR24011,PTHR24011:SF187 KOG0131 - - GO:0003676 AT1G32790.1 CID11 CTC-interacting domain 11 Cre01.g044750 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g1000.t1 - - - - - - - - - Cre01.g009575 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g241.t1 PF00847 PTHR11795:SF332,PTHR11795 KOG4462 - K09284 GO:0003700,GO:0006355 AT5G57390.1 AIL5,CHO1,EMK AINTEGUMENTA-like 5 Cre16.g663450 LCI11 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 7 Low-CO2-inducible membrane protein Low-CO2 inducible gene revealed by cDNA analyses. At least four other paralogous genes are conserved in the Chlamydomonas genome. Predicted amino acid sequence is homologous to Arabidopsis hypothetical protein T20K12.220. SOSUI prediction: 1 transmembrane g16017.t1,Cre16.g663450.t1.1,LCI11 PF01062 - - - - - AT3G61320.1 - Bestrophin-like protein Cre10.g427950 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 18 - - g10570.t1 PF00211 PTHR24790,PTHR24790:SF7 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre01.g048850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g1084.t1,Cre01.g048850.t1.1 PF01388,PF01342 - - - - GO:0003677,GO:0005622,GO:0005634 AT3G61740.1 ATX3,SDG14 SET domain protein 14 Cre01.g016542 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g394.t2, g394.t1 - PTHR10108,PTHR10108:SF383 - - - - - - - Cre02.g107100 - 0 13 1.0 1.0 0 13 1.0 1.0 C n - - - - g2195.t1 - - - - - - - - - Cre03.g183700 GTR10,BGS1 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 8 1,3-beta-D-glucan synthase 1,3-beta-D-glucan synthase and glycosyl transferase. Previously annotated as GTR10 g3807.t1,BGS1,GTR10 PF02364 PTHR12741,PTHR12741:SF4 KOG4462 - - GO:0000148,GO:0003843,GO:0006075,GO:0016020 AT2G31960.1 ATGSL03,ATGSL3,GSL03 glucan synthase-like 3 Cre09.g389900 HRP4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 3 Hydroxyproline-rich glycoprotein Similar to hydroxyproline-rich glycoprotein family in Arabidopsis thaliana; Genbank entry NM_113865 g9498.t1,HRP4 - PTHR15744 KOG0487 - - - AT3G29390.1 RIK RS2-interacting KH protein Cre12.g514250 HLM17 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g12692.t1,Cre12.g514250.t1.1,HLM17 PF01388,PF00628,PF02373,PF02928,PF02375,PF08429 PTHR10694,PTHR10694:SF8 - 1.14.11.- K11446 GO:0003677,GO:0005622,GO:0005515,GO:0005634 AT4G20400.1 JMJ14,PKDM7B JUMONJI 14 Cre09.g392500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9440.t1,Cre09.g392500.t1.1 - - - - - - - - - Cre01.g006876 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g180.t1 - - - - - - - - - Cre09.g392505 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - - - - g9726.t1,Cre02.g128250.t1.1 PF04564 PTHR22849 - - - GO:0000151,GO:0004842,GO:0016567 AT5G61560.1 - U-box domain-containing protein kinase family protein Cre11.g467400 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g11727.t1,Cre11.g467400.t1.1 - - - - - - - - - Cre06.g290000 GIP1 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 10 Glyoxylate induced protein - g6728.t1,GIP1 PF07883 - - - - - AT4G17050.1 UGLYAH ureidoglycine aminohydrolase Cre03.g154150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g3140.t1 PF00169,PF00023,PF01412 PTHR23180,PTHR23180:SF78 KOG0521 - K12489 GO:0005515,GO:0008060,GO:0008270,GO:0032312 AT5G13300.1 AGD3,SFC,VAN3 ARF GTPase-activating protein Cre12.g494550 RNP10 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 3 RNA binding protein Putative RNA-binding protein; contains RNA-binding region RNP-1 (SPL6) g12057.t1,RNP10, g12057.t2,RNP10 PF00076 PTHR13976,PTHR13976:SF3 KOG1365 - K12898 GO:0003676 AT5G66010.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre13.g584750 SMM46 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g14353.t2,SMM46, g14353.t1,SMM46 PF08241 PTHR13090 KOG2940 - - GO:0008152,GO:0008168 AT1G22800.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre06.g309550 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g7162.t2, g7162.t1 - - - - - - - - - Cre03.g151500 ATA1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g3083.t1,ATA1 PF01168 - - - - - - - - Cre05.g245150 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g5230.t1 - PTHR16128 - - - - AT1G56000.1 - FAD/NAD(P)-binding oxidoreductase family protein Cre12.g535100 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 15 - - g13163.t1,Cre12.g535100.t1.1 PF00069 PTHR24356,PTHR24356:SF118 KOG0598 - - GO:0004672,GO:0005524,GO:0006468 AT3G25250.1 AGC2,AGC2-1,AtOXI1,OXI1 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Cre01.g041950 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 2 - - g941.t1,Cre01.g041950.t1.1 - - - - - - - - - Cre14.g613450 CGL87 - 0 4 1.0 1.0 0 4 1.0 1.0 SP Y - - - - g14783.t1,Cre14.g613450.t1.1 PF01980 PTHR12818 - - - - AT4G28020.1 - - Cre11.g482550 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g11979.t1 - - - - - - - - - Cre11.g483200 - 0 1 1.0 nan 0 1 1.0 nan M n - 18 - - g11995.t1,Cre11.g483200.t1.1 - - - - K10301 - - - - Cre12.g525350 PTK15 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g12929.t1,PTK15 - - - - - - - - - Cre01.g047500 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 12 - - g1056.t1,Cre01.g047500.t1.1 PF00560 PTHR23155:SF251,PTHR23155 KOG0472 - - GO:0005515 AT3G26500.1 PIRL2 plant intracellular ras group-related LRR 2 Cre01.g042750 ACH1 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 Aconitate hydratase Aconitate hydratase (EC 4.2.1.3), mitochondrial; citrate hydro-lyase; aconitase g957.t1,Cre01.g042750.t1.1 PF00694,PF00330 PTHR11670,PTHR11670:SF5 KOG0453 4.2.1.3 K01681 GO:0008152,GO:0003994,GO:0006099,GO:0051539 AT4G26970.1 ACO2 aconitase 2 Cre02.g102050 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g2083.t1 - - - - - - - - - Cre07.g344800 TNP21 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8023.t1,Cre07.g344800.t1.1,TNP21 PF07282 PTHR23257,PTHR23257:SF99 - - - - - - - Cre06.g260650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 8 - - g5857.t1 PF03385 - - - - - AT3G57420.1 - Protein of unknown function (DUF288) Cre11.g480950 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g11939.t1,Cre11.g480950.t1.1 PF00505 PTHR13711 KOG0381 - K10802 GO:0003677 AT1G20696.2 HMGB3,NFD03,NFD3 high mobility group B3 Cre05.g235550 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g5416.t1 - - - - - - - - - Cre10.g443900 BOR1 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n upregulated 15 Borate transporter Homologous to Arabidopsis borate transporter, AtBor1. Contains HCO3- transporter family. (pfam00955). This family contains Band 3 anion exchange proteins that exchange Cl-/HCO3-. This family also includes cotransporters of Na+/HCO3-. No ESTs, but mRNA was g10913.t1,BOR1 PF00955 PTHR11453,PTHR11453:SF6 - - - GO:0005452,GO:0006820,GO:0016020,GO:0016021 AT3G62270.1 - HCO3- transporter family Cre07.g344950 LHCA9 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Light-harvesting protein of photosystem I Encodes a less abundant light-harvesting antenna protein for PS1. The sequence of this gene was deposited in Genbank (AF244524) by Merchan and Fernandez (2002). It is designated as Lhca9 in PMID: 14555480, and Lhca7 in PMID: 14652691, respectively. g8026.t1,Cre07.g344950.t1.1 PF00504 PTHR21649 - - - GO:0009765,GO:0016020 AT1G45474.1 LHCA5 photosystem I light harvesting complex gene 5 Cre02.g116350 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g2408.t1,Cre02.g116350.t1.1 PF03992 - - - - GO:0005737,GO:0016491,GO:0017000 - - - Cre02.g074350 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 16 - - g1320.t1 - - KOG2945 - - - - - - Cre01.g002550 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 15 - - g61.t1 PF00069 PTHR24356 KOG0598 - - GO:0004672,GO:0005524,GO:0006468 AT1G30640.1 - Protein kinase family protein Cre16.g683819 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g16807.t1 PF02900 - - - - GO:0006725,GO:0008198,GO:0016491 - - - Cre02.g108700 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g2228.t1 PF00069 PTHR23257:SF313,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT5G08160.1 ATPK3,PK3 serine/threonine protein kinase 3 Cre12.g530050 IPP7 - 0 8 1.0 1.0 0 8 1.0 1.0 M n upregulated 13 - - g13049.t1,Cre12.g530050.t1.1,IPP7 PF03372 PTHR11200:SF66,PTHR11200 KOG4462 - - - AT2G31830.2 - endonuclease/exonuclease/phosphatase family protein Cre24.g755247 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g18252.t1,Cre05.g230450.t1.1 - - - - - - - - - Cre16.g652550 PRPL24 - 0 1 1.0 nan 0 1 1.0 nan C n - 3 Plastid ribosomal protein L24 Chloroplast ribosomal protein L24, imported to chloroplast; Chloroplast large ribosomal subunit protein L24 g15782.t1,Cre16.g652550.t1.1 PF00467 PTHR12903 - - - GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT5G54600.1 - Translation protein SH3-like family protein Cre06.g308200 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g7135.t1 - - - - - - - - - Cre03.g182150 TEF8 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 6 Predicted protein Protein of unknown function DUF477, chloroplast location proposed; Present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018] g3775.t1,Cre03.g182150.t1.1 PF04536 - - - - - AT1G54780.1 TLP18.3 thylakoid lumen 18.3 kDa protein Cre17.g738550 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g17863.t1 PF00644 PTHR21328:SF12,PTHR21328 - - - GO:0003950 - - - Cre12.g496150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 16 - - g12663.t1,Cre12.g496150.t1.1 PF00004 PTHR20953 - - - GO:0005524 AT1G33290.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre02.g101500 MRS1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Mg2+ dependent mitochondrial pre-mRNA splicing factor, membrane associated Mg2+ dependent mitochondrial pre-mRNA splicing factor, with homology to CorA, a Mg2+ transporter protein. Probably is essential for group II intron splicing in mitochondria in response to Mg2+ (see PMID: 11544180). Homologous to the MRS2 splicing factor g2070.t1,Cre02.g101500.t1.1,MRS1 - PTHR13890,PTHR13890:SF3 KOG2662 - - - AT1G80900.1 ATMGT1,MGT1,MRS2-10 magnesium transporter 1 Cre08.g385950 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9080.t1 - - - - - - - - - Cre13.g591350 MFT27 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g14501.t1,MFT27 PF07690 PTHR24003 - - - GO:0016021,GO:0055085 - - - Cre12.g560400 DNJ16 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - DnaJ-like protein DnaJ-like protein; contains N-terminal K homology RNA-binding domain, type I (cd00105) and C-terminal J-domain (pfam00226) g13311.t1 PF00226,PF00013 PTHR25040 - - - GO:0031072,GO:0003723 AT2G20560.1 - DNAJ heat shock family protein Cre07.g342402 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g7938.t1 - - - - - - - - - Cre12.g531900 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 6 - - g13088.t1,Cre12.g531900.t1.1 PF00753,PF00258,PF01613 - - - - GO:0016787,GO:0010181,GO:0016491,GO:0042602 - - - Cre07.g347650 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g8090.t1,Cre07.g347650.t1.1 - - - - - - - - - Cre17.g705600 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g17101.t1,Cre17.g705600.t1.1 PF00487 - - - - GO:0006629,GO:0016491,GO:0055114 - - - Cre03.g163200 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 6 - - g3344.t1 PF01422 PTHR12360 - - - GO:0003700,GO:0005634,GO:0006355,GO:0008270 AT5G05660.1 ATNFXL2 sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors Cre12.g524900 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g12921.t1 - PTHR26336,PTHR26336:SF79 - - - - AT2G25490.1 EBF1,FBL6 EIN3-binding F box protein 1 Cre18.g749947 FAP21 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Flagellar Associated Protein Flagella Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG15 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400]. MOT35; identified by comparative genomics as being pres g18115.t1,Cre31.g780650.t1.1 - - - - - - - - - Cre16.g653200 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 - - g15795.t1 - PTHR12197,PTHR12197:SF87 - - - - - - - Cre03.g160953 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 13 - - g3298.t1,Cre03.g160953.t1.1 PF00664,PF00445 PTHR24221,PTHR24221:SF91 KOG1642 - - GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0003723,GO:0033897 AT2G39780.1 RNS2 ribonuclease 2 Cre01.g007000 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 17 - - g183.t1,Cre01.g007000.t1.1 PF01061,PF00005 PTHR19241 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT2G29940.1 ATPDR3,PDR3 pleiotropic drug resistance 3 Cre10.g429300 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g10605.t1 - - - - - - - - - Cre13.g567650 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 11 - - g13969.t1 PF05577 PTHR11010,PTHR11010:SF14 KOG2183 3.4.14.2 K01276 GO:0006508,GO:0008236 AT5G65760.1 - Serine carboxypeptidase S28 family protein Cre07.g353250 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g8216.t1,Cre07.g353250.t1.1 - - - - - - - - - Cre16.g683100 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 15 - - g16440.t1,Cre16.g683100.t1.1 - - - - - - - - - Cre07.g316900 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 16 - - g7326.t1 - - - - - - - - - Cre13.g585500 HAP1 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 6 Putative haloperoxidase Contains a PAP2/haloperoxidase domain found in vanadium chloroperoxidases and related to phosphoesterases; closely related to upstream divergent HPX2 gene, and to unlinked HPX3; highly induced by sulfur starvation in WT, but not in sac1 mutants (PMID: 154 g14371.t1,Cre13.g585500.t1.1,HAP1 - - - - - - - - - Cre03.g171424 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3533.t1 - - - - - - - - - Cre12.g547900 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13594.t1,Cre12.g547900.t1.1 PF00153 PTHR24089,PTHR24089:SF87 KOG0752 - - - AT3G53940.1 - Mitochondrial substrate carrier family protein Cre03.g179150 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 14 - - g3708.t1,Cre03.g179150.t1.1 - - - - - - - - - Cre12.g497200 FAP216 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g12641.t1,Cre12.g497200.t1.1 - - - - - - - - - Cre01.g051211 MAE9 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g1134.t1,MAE9 PF01554 PTHR11206:SF39,PTHR11206 KOG1347 - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT4G29140.1 - MATE efflux family protein Cre03.g159851 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 2 - - g3273.t1,Cre03.g159850.t1.3 PF00023 - - - - GO:0005515 AT2G03430.1 - Ankyrin repeat family protein Cre12.g545500 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g13649.t1 - - KOG0027 - - - AT3G50360.1 ATCEN2,CEN1,CEN2 centrin2 Cre03.g207950 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g4149.t1,Cre03.g207950.t1.1 PF05327 PTHR12790 KOG2434 - - - AT2G34750.1 - RNA polymerase I specific transcription initiation factor RRN3 protein Cre12.g514000 LAG1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 Predicted protein related to longevity assurance protein Related to longevity assurance protein; TRAM, LAG1 and CLN8 domain homology; possibly involved in ceramide synthesis g12688.t1,Cre12.g514000.t1.1,LAG1 PF03798 PTHR12560 - - - GO:0016021 AT3G25540.1 LAG1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein Cre17.g740430 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g17910.t1 PF02810,PF00083 PTHR24063,PTHR24063:SF154 - - - GO:0016021,GO:0022857,GO:0055085 AT5G59250.1 - Major facilitator superfamily protein Cre07.g340000 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7910.t1 - - - - - - - - - Cre09.g397290 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g9860.t1,Cre02.g134150.t1.1 - - - - - - - - - Cre05.g234700 PYK3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Pyruvate kinase Pyruvate kinase (PK) [EC 2.7.1.40]; catalyses the final step in glycolysis, which is the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP. (This gene model is one of three possible variants from this genome regi g5389.t1 PF00224,PF02887 PTHR11817 KOG2323 - - GO:0000287,GO:0004743,GO:0006096,GO:0030955 AT5G63680.1 - Pyruvate kinase family protein Cre17.g701450 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g17006.t1 - - - - - - - - - Cre01.g019900 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g463.t1,Cre01.g019900.t1.1 - - - - - - - - - Cre06.g302950 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 12 - - g7013.t1 PF05548 - - - - - - - - Cre17.g737650 SOM6 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17845.t1,SOM6 PF04072 - - - - GO:0008168 AT5G42760.2 - Leucine carboxyl methyltransferase Cre12.g543900 PTP6 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 11 - - g13691.t1,PTP6 - PTHR11717,PTHR11717:SF7 KOG3217 - - GO:0004725,GO:0006470 - - - Cre06.g305200 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7064.t1 - PTHR23215 KOG2893 - - - AT1G30970.1 SUF4 zinc finger (C2H2 type) family protein Cre17.g730000 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 11 - - g17642.t1,Cre17.g730000.t1.1 - - - - - - - - - Cre09.g387250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g9560.t1 PF00685 PTHR15723 KOG3704 - - GO:0008146 - - - Cre07.g329650 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g7669.t1,Cre07.g329650.t1.1 PF06041 - - - - - - - - Cre08.g362050 FAP49 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 7 Flagellar Associated Protein, membrane-associated Flagella Associated Membrane Protein with PAS sensory domain; found in the flagellar proteome [PMID: 15998802]; FAP153 likely is a part of FAP49 g8479.t1,Cre08.g362050.t1.1 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre03.g145147 TRP8 - 0 1 1.0 nan 0 1 1.0 nan SP n - - Transient receptor potential ion channel protein Transient receptor potential channel in TRPV subfamily g2921.t1,Cre01.g058450.t1.1,TRP8 PF08016 PTHR10582 - - - - - - - Cre06.g276950 HTA24 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - Histone H2A Replication-linked Histone H2A g6208.t1,Cre06.g276950.t1.1,HTA24 PF00125 PTHR23430 KOG1756 - K11251 GO:0003677 AT1G51060.1 HTA10 histone H2A 10 Cre13.g577450 GPA3 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n downregulated 13 - - g14189.t1,GPA3 PF01266 PTHR11985 KOG0042 1.1.5.3 K00111 GO:0016491 AT3G10370.1 SDP6 FAD-dependent oxidoreductase family protein Cre16.g688950 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g16174.t1,Cre16.g688950.t1.1 - - - - - - - - - Cre16.g673281 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g16710.t1,Cre01.g065400.t1.1 PF05721 PTHR20883 KOG3290 - - - AT2G01490.1 - phytanoyl-CoA dioxygenase (PhyH) family protein Cre16.g666300 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g16079.t1 PF07714 PTHR23257,PTHR23257:SF321 KOG0192 - - GO:0004672,GO:0006468 AT5G49470.2 - PAS domain-containing protein tyrosine kinase family protein Cre16.g666302 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g16081.t1,Cre16.g666302.t1.1 - - - - - - - - - Cre17.g717900 PHC1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 Cell wall protein pherophorin-C1 Pherophorin-C1 (PHC1) [PMID: 16367971; Genbank entry DQ196107]; extracellular matrix protein (cell wall protein); belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain. (partial sequence; due to g17374.t1,Cre17.g717900.t1.1,PHC1 PF12499 - - - - - - - - Cre03.g165200 APG7 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 14 Autophagy-related protein, ubiquitin-activating enzyme E1 An ubiquitin-activating enzyme E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively g3388.t1,APG7 - - - - - - - - - Cre09.g407650 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g10106.t1,Cre09.g407650.t1.1 - - - - - - - - - Cre10.g419850 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g10391.t1,Cre10.g419850.t1.1 - - - - - - - - - Cre06.g278252 GOX18 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 Glyoxal or galactose oxidase The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate g6393.t1,Cre13.g600900.t1.1,Cre13.g600900.t1.2,GOX18 PF09118,PF07250 - - - - - AT5G19580.1 - glyoxal oxidase-related protein Cre06.g278253 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 16 - - g6394.t1,Cre13.g600950.t1.1 - - - - - - - - - Cre06.g278251 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 3 Cryptochrome photoreceptor Deoxyribodipyrimidine photolyase; contains 6-4 DNA-photolyase and FAD binding domains; involved in light-dependent DNA repair. Previously annotated as UVR3 g6392.t1,Cre13.g600850.t1.1 PF03441,PF00875 PTHR11455 KOG0133 - K02295 GO:0003913,GO:0006281 AT3G15620.1 UVR3 DNA photolyase family protein Cre06.g278256 RPN8 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 26S proteasome regulatory subunit 26S proteasome regulatory complex, lid subcomplex, non-ATPase subunit RPN8 (subunit S12) (subunit 7) (PSD7) (PSMD7) g6397.t1,Cre13.g601100.t1.1,Cre13.g601100.t1.2,RPN8 PF01398 PTHR10540,PTHR10540:SF7 KOG1556 - K03038 GO:0005515 AT3G11270.1 MEE34 Mov34/MPN/PAD-1 family protein Cre06.g278257 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 16 - - g6398.t1,Cre13.g601150.t1.1,Cre13.g601150.t1.2 - - KOG1003 - - - - - - Cre06.g278255 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g6396.t1,Cre13.g601050.t1.1 - - KOG0978 - - - - - - Cre07.g312100 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7220.t1 PF07065 PTHR15323 KOG2983 - - - AT4G05440.1 EDA35 temperature sensing protein-related Cre01.g037100 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 15 - - g832.t1 PF00069 PTHR24347,PTHR24347:SF65 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT5G24430.1 - Calcium-dependent protein kinase (CDPK) family protein Cre08.g369350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g8654.t1 - - - - - - - - - Cre16.g647602 - 0 18 1.0 1.0 0 18 1.0 1.0 O n - 10 - - g15677.t2, g15677.t1 PF00176,PF00271,PF01189, PF01189 PTHR22807:SF4,PTHR22807, PTHR10799 KOG2360, KOG0385 - - GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT5G26180.1, AT5G66750.1 ATDDM1,CHA1,CHR01,CHR1,DDM1,SOM1,SOM4 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, chromatin remodeling 1 Cre16.g679876 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g16142.t2,Cre01.g064000.t2.1, g16142.t1,Cre01.g064000.t1.1 PF02214 PTHR14499,PTHR14499:SF11 - - - GO:0005249,GO:0006813,GO:0008076,GO:0016020 AT5G55000.2 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein Cre17.g735650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g17796.t1 - - - - - - - - - Cre13.g605900 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 13 - - g14612.t1 - - - - - - - - - Cre12.g549500 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g13558.t1,Cre12.g549500.t1.1 PF06110 PTHR12452 KOG3425 - - - AT5G42850.1 - Thioredoxin superfamily protein Cre11.g467771 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g11701.t1 - - - - - - - - - Cre08.g372900 VFL1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 Variable flagella protein 1 VFL1, variable flagella 1. Mutations alter number and position of basal bodies. Protein localizes to basal bodies and probasal bodies. Contains leucine-rich repeats. The human ortholog is CLERC (centrosomal leucine-rich repeat and coiled-coil containing g8733.t1,VFL1 PF00560 PTHR10588 KOG2123 - - GO:0005515 AT1G78230.1 - Outer arm dynein light chain 1 protein Cre06.g255200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g5736.t1 - - - - - - - - - Cre04.g223000 HLM9 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 13 - - g4865.t1,HLM9 PF12234 PTHR13950,PTHR13950:SF7 - - - - AT2G46560.1 - transducin family protein / WD-40 repeat family protein Cre10.g445050 SLT3 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n upregulated 5 Sodium/sulfate co-transporter SAC1-like transporter 3, putative sodium/sulfate co-transporter, transcript is down-regulated during sulfur-deprivation; related to the SAC1 protein which regulates sulfur-deficiency responses [PMID: 16307308] g10941.t1,Cre10.g445050.t1.1 PF03600,PF02080 PTHR10283:SF52,PTHR10283 - - - GO:0015137,GO:0015746,GO:0016021,GO:0055085,GO:0006813,GO:0008324 - - - Cre07.g315200 NRM3,RET1,NRAMP3 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 1 Putative manganese/metal transporter, NRAMP homolog Putative manganese/metal transporter, NRAMP homolog. Related to Ethylene Insensitive Protein 2 (EIN2); PMID: 10381874; N-terminus is NRAMP-like, related to MntH manganese transport protein. Cis-acting regulatory elements were characterized by Fei et al. g7292.t1,NRM3,NRAMP3 PF01566 PTHR11706,PTHR11706:SF13 KOG1291 - K14513 GO:0005215,GO:0006810,GO:0016020 AT5G03280.1 ATEIN2,CKR1,EIN2,ERA3,ORE2,ORE3,PIR2 NRAMP metal ion transporter family protein Cre14.g618400 - 0 9 1.0 1.0 0 9 1.0 1.0 C n upregulated 17 - - g14897.t1,Cre14.g618400.t1.1 PF00005 PTHR19229 - - - GO:0005524,GO:0016887 AT3G47790.1 ATATH7,ATH7 ABC2 homolog 7 Cre09.g414900 ELG32,ELG33 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 Exostosin-like glycosyltransferase Exostosin-like glycosyltransferases. Combines two overlapping models ELG32 and ELG33 from v3 g10273.t1,ELG32,ELG33 PF03016 PTHR11062,PTHR11062:SF12 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre13.g579050 APC1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - Anaphase promoting complex subunit 1 (partial) Subunit 1 of Anaphase Promoting Complex. Cell cycle regulated E3 ubiquitin ligase. Gene model should be combined with upstream model, Au9.Cre13.g579100(+) g14225.t1,Cre13.g579050.t1.1,APC1 - - - - - - - - - Cre12.g560650 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 6 - - g13306.t1 - PTHR22904,PTHR22904:SF65 - - - - - - - Cre16.g665650 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - - - g16066.t1 PF01926 PTHR10229 KOG0410 - K03665 GO:0005525,GO:0005622 AT5G57960.1 - GTP-binding protein, HflX Cre12.g546350 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g13628.t1,Cre12.g546350.t1.1 PF05653 PTHR12570 KOG2922 - - - AT1G71900.1 - Protein of unknown function (DUF803) Cre03.g177007 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g3659.t1 PF02373 PTHR12480,PTHR12480:SF6 - - - - AT5G63080.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre12.g536900 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 1 - - g13203.t1 PF07683,PF02492 PTHR13748,PTHR13748:SF4 - - - - AT1G80480.1 PTAC17 plastid transcriptionally active 17 Cre06.g301450 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g6974.t1 - - - - - - - - - Cre06.g289426 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6716.t1 - - - - - - - - - Cre02.g108950 LF1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g2233.t1,LF1 - - - - - - - - - Cre16.g681354 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated - - - g16785.t1,Cre01.g068650.t1.1 - - KOG4172 - - - AT3G53410.1 - RING/U-box superfamily protein Cre17.g708050 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g17155.t1 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT1G67890.1 - PAS domain-containing protein tyrosine kinase family protein Cre01.g034451 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 8 - - g778.t1 PF08059,PF00789 PTHR23333,PTHR23333:SF6 KOG2086 - K14012 GO:0005515 AT4G04210.1 PUX4 plant UBX domain containing protein 4 Cre08.g380201 SHKD1 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g8949.t1,SHKD1 PF08501,PF01487,PF01488 PTHR21089 KOG0692 1.1.1.25,4.2.1.10 K13832 GO:0003855,GO:0004764,GO:0005737,GO:0055114 AT3G06350.1 EMB3004,MEE32 dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative Cre14.g609250 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g14688.t1 - - - - - - - - - Cre17.g736350 SCC3 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g17811.t1,SCC3 - - - - - - - - - Cre03.g144807 MAS1 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 Malate synthase Malate synthase (EC 2.3.3.9); identical to cDNA sequence (AAP75564); PMID: 19214701 g2904.t1,Cre01.g057800.t1.1,Cre01.g057800.t1.2,MAS1 PF01274 PTHR21631:SF1,PTHR21631 KOG1261 2.3.3.9 K01638 GO:0004474,GO:0006097 AT5G03860.1 MLS malate synthase Cre06.g280950 PYK2 - 0 1 1.0 nan 0 1 1.0 nan O n - - Pyruvate kinase Putative Pyruvate Kinase; EC 2.7.1.40; catalyses the final step in glycolysis, which is the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP; probably cytosolic g6534.t1,Cre06.g280950.t1.1 PF00224,PF02887 PTHR11817 KOG2323 - - GO:0000287,GO:0004743,GO:0006096,GO:0030955 AT2G36580.1 - Pyruvate kinase family protein Cre17.g746697 FAP249 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 4 Flagellar Associated Protein Flagellar Associated Protein with ankyrin repeats, found in the flagellar proteome [PMID: 15998802]. Possible phospholipase A2 or serine endopeptidase activity g18050.t1,Cre20.g758450.t1.1,FAP249 PF00023 PTHR24198:SF302,PTHR24198 KOG4412 - - GO:0005515 AT3G04710.3 - ankyrin repeat family protein Cre01.g038100 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - - - - g853.t1,Cre01.g038100.t1.1 PF01062 - - - - - AT2G45870.1 - Bestrophin-like protein Cre14.g633350 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 1 - - g15269.t1 - - - - - - - - - Cre03.g196300 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g4066.t1,Cre03.g196300.t1.1 PF04055 PTHR21339 - - - GO:0003824,GO:0051536 - - - Cre12.g516333 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g12736.t1,Cre12.g516333.t1.1 - - - - - - AT1G53800.2 - - Cre07.g341153 - 0 1 1.0 nan 0 1 1.0 nan - n - 14 - - g7970.t1 - - - - - - - - - Cre16.g649466 CAX5 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 8 - - g15715.t1,CAX5 PF01699 - KOG1397 - - GO:0016021,GO:0055085 AT3G13320.1 atcax2,CAX2 cation exchanger 2 Cre03.g188450 PTX2 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3903.t1,Cre03.g188450.t1.1,PTX2 - - - - - - - - - Cre12.g542500 MOC1 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 13 Mitochondrial transcription termination factor Putative mitochondrial transcription termination factor (mTtf-like protein; contains two possible mTerf-domains) [PMID: 15448140] g13722.t1,Cre12.g542500.t1.1 PF02536 PTHR13068 - - - - AT4G02990.1 - Mitochondrial transcription termination factor family protein Cre12.g547750 SCS1,SPCS - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - Selenocysteine synthase Synthesizes Selenocysteine-tRNA(Sec) fromO-phosphoseryl-tRNA(Sec)and senelophosphate; O-phosphoseryl-tRNA(Sec) selenium transferase (Sec synthase) (Selenocysteinyl-tRNA(Sec) synthase) (Sep-tRNA:Sec-tRNA synthase) (SepSecS) (UGA suppressor tRNA-associated g13597.t1,Cre12.g547750.t1.1,SCS1,SPCS PF05889 PTHR12944 KOG3843 2.9.1.2 K03341 GO:0016740,GO:0016785 - - - Cre01.g021900 PUS11 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 9 - - g506.t1,PUS11 - PTHR11142 - - - GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT5G35400.1 - Pseudouridine synthase family protein Cre04.g225400 - 0 1 1.0 nan 0 1 1.0 nan C n - 5 - - g4926.t1,Cre04.g225400.t1.1 - PTHR10891:SF163,PTHR10891 KOG0027 - - - - - - Cre13.g576550 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g14168.t2, g14168.t1,Cre13.g576550.t1.1 PF04564 PTHR22849 - - - GO:0000151,GO:0004842,GO:0016567 AT3G61390.2 - RING/U-box superfamily protein Cre14.g623050 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 17 - - g15016.t1, g15016.t2 - - - - - - - - - Cre01.g012100 ARS4 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 Arylsulfatase Protein similar to periplasmic arylsulfatase g299.t1,ARS4 PF00884 PTHR10342:SF2,PTHR10342 KOG3867 3.1.6.- K14607 GO:0008152,GO:0008484 - - - Cre03.g176350 PLAP5,PLP5 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y upregulated 4 Plastid lipid associated protein Plastid-lipid associated protein PAP/fibrillin family-like protein. Arabidopsis homologue is in plastoglobuli [PMID: 16461379]. Previously annotated as PLAP5 g3643.t2,Cre03.g176350.t1.1,PLP5, g3643.t1,PLP5 PF04755 - - - - GO:0005198,GO:0009507 AT1G51110.1 - Plastid-lipid associated protein PAP / fibrillin family protein Cre09.g400441 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 2 - - g9963.t1,Cre02.g137750.t1.1 PF02373 PTHR12480 KOG2130 - - - AT5G06550.1 - - Cre16.g687100 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g16349.t1 - - - - - - - - - Cre17.g727326 - 0 1 1.0 nan 0 1 1.0 nan - n - 14 - - g17584.t1 - - - - - - - - - Cre14.g624700 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g15050.t1,Cre14.g624700.t1.1 - - - - - - - - - Cre05.g247400 RDP4 - 0 1 1.0 nan 0 1 1.0 nan SP Y - 8 Putative rhodanese domain phosphatase Putative rhodanese domain phosphatase. Rhodanese is a sulphurtransferase involved in cyanide detoxification with a common evolutionary ancestry to a large family of proteins. This rhodanese-like domain may not be catalytic. Cited by Kerk et al. 2008 [P g5184.t1,Cre05.g247400.t1.1 PF00581 - - - - - - - - Cre17.g725250 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g17540.t1 - - - - - - - - - Cre14.g630871 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 6 - - g15199.t1 PF07683,PF02492 PTHR13748:SF11,PTHR13748 KOG2743 - - - AT1G80480.1 PTAC17 plastid transcriptionally active 17 Cre12.g509550 PDE5 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - 3\',5\'-cyclic-nucleotide phosphodiesterase Metal dependent hydrolase similar to cAMP dependent cyclic phosphodiesterase from Canis XP_852383.1 g12361.t1,PDE5 PF00233 PTHR11347:SF75,PTHR11347 - 3.1.4.17 K13755 GO:0004114,GO:0007165 - - - Cre17.g737400 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 16 - - g17838.t2, g17838.t1 - PTHR26393,PTHR26393:SF466 KOG4462 - - - AT1G28440.1 HSL1 HAESA-like 1 Cre09.g410100 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g10161.t1,Cre09.g410100.t1.1 PF00689,PF00702,PF00690,PF00122 PTHR24093,PTHR24093:SF176 KOG0202 3.6.3.8 K01537 GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT1G07810.1 ACA3,ATECA1,ECA1 ER-type Ca2+-ATPase 1 Cre03.g174850 CGL111 - 0 9 1.0 1.0 0 9 1.0 1.0 SP Y - 4 - - g3611.t1,Cre03.g174850.t1.1 - PTHR19308 KOG2761 - - - AT4G14500.1 - Polyketide cyclase/dehydrase and lipid transport superfamily protein Cre03.g173800 PDXK1,PDX2 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 Pyridoxal kinase Pyridoxal kinase, involved in vitamin B6 biosynthesis. Previously annotated as PDXK1 g3584.t2,PDX2,PDXK1, g3584.t1,Cre03.g173800.t1.1,PDX2,PDXK1 PF08543 PTHR10534 KOG2599 2.7.1.35 K00868 - AT5G37850.2 ATSOS4,SOS4 pfkB-like carbohydrate kinase family protein Cre07.g324350 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g7493.t1 - - - - - - - - - Cre15.g639100 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g15429.t1,Cre15.g639100.t1.1 - - - - - - - - - Cre03.g162800 LCI1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 6 Low-CO2-inducible membrane protein Low-CO2-inducible gene encoding 21 kDa transmembrane protein; Burow et al. 1996 [PMID: 8756610]; SOSUI prediction: signal peptide in N-terminal end and 3 transmembrane helices. Regulated by CO2 through MYB-transcription factor LCR1 [PMID: 15155888] and CC g3337.t1,Cre03.g162800.t1.1 - - - - - - - - - Cre04.g226176 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g4949.t1 - - - - - - - - - Cre01.g017050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g405.t1,Cre01.g017050.t1.1 PF00153 PTHR24089 KOG0756 - - - AT5G01340.1 - Mitochondrial substrate carrier family protein Cre14.g632650 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - - - - g15244.t1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT4G29180.2 RHS16 root hair specific 16 Cre13.g577600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g14192.t2, g14192.t1,Cre13.g577600.t1.1 - - - - - - - - - Cre09.g398067 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase); possibly cytosolic (by homology to :At3g25230 = FKBP62); contains probably 3 FKBP domains and C-terminal TPR repeats [PMID: 15701785] g9881.t1,Cre02.g135150.t1.1 PF00254 PTHR10516,PTHR10516:SF66 KOG0543 5.2.1.8 K09571 GO:0006457 AT3G25230.1 ATFKBP62,FKBP62,ROF1 rotamase FKBP 1 Cre12.g523550 UMM11 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g12892.t1,UMM11 PF08241 PTHR10108,PTHR10108:SF240 - - - GO:0008152,GO:0008168 AT1G54310.2 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre12.g540900 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 11 - - g13758.t1, g13758.t2,Cre12.g540900.t1.1 - - - - - - - - - Cre04.g227800 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 8 - - g4985.t1 PF01476 - KOG3544 - - GO:0016998 - - - Cre01.g023500 FAL2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 18 Similar to Flagellar Associated Protein FAP234 Similar to conserved uncharacterized Flagellar Associated Protein FAP234 that is found in the flagellar proteome [PMID: 15998802]. Overlaps with FAP234 gene model from v3 g542.t1,Cre01.g023500.t1.1,FAL2 - - KOG0977 - - - - - - Cre06.g264450 AOT5 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 9 Amino acid transporter Belongs to AAAP family of amino acid/auxin permeases; most similar to animal and fungal relatives, in particular to neutral amino acid transporter system N2. Identified by comparative genomics as being present only in organisms having motile cilia. Prev g5941.t1,Cre06.g264450.t1.1,AOT5 PF01490 PTHR22950 KOG1305 - - - AT1G80510.1 - Transmembrane amino acid transporter family protein Cre12.g510550 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 13 - - g12338.t1,Cre12.g510550.t1.1 - PTHR12197:SF36,PTHR12197 - - - - AT1G26760.1 ATXR1,SDG35 SET domain protein 35 Cre06.g278089 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 8 - - g6233.t1,Cre13.g593050.t1.1 PF00350 - - - - GO:0003924,GO:0005525 - - - Cre06.g261000 PSBR - 0 1 1.0 nan 0 1 1.0 nan C n - 6 10 kDa photosystem II polypeptide Similar to At1g79040, chloroplast-targeted g5866.t1,Cre06.g261000.t1.1 PF04725 - - - - GO:0009523,GO:0009654,GO:0015979,GO:0042651 AT1G79040.1 PSBR photosystem II subunit R Cre03.g157950 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g3233.t1 - PTHR22904,PTHR22904:SF61 - - - - AT1G04190.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre16.g672250 MPA13 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n - - - - g16682.t1,MPA13 PF00149 PTHR22953 KOG1378 - - GO:0016787 AT3G07130.1 ATPAP15,PAP15 purple acid phosphatase 15 Cre12.g559100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 11 - - g13342.t1,Cre12.g559100.t1.1 - - - - - - - - - Cre17.g738000 AGG2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 Membrane protein required for phototactic orientation Membrane protein required for phototactic orientation; isolated as a detergent resistant membrane protein from flagellar membranes. Characterized by Iomini et al. 2006 [PMID: 16753570]. g17851.t4,AGG2, g17851.t3,AGG2, g17851.t2,AGG2, g17851.t1,AGG2 PF04749 PTHR10502,PTHR10502:SF50 - - - GO:0005509,GO:0005544 AT5G35525.1 - PLAC8 family protein Cre16.g694000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g15597.t1,Cre16.g694000.t1.1 - - - - - - - - - Cre06.g294850 UBC10 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Ubiquitin-conjugating enzyme E2 Ubiquitin carrier-like protein; related to Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase) (Ubiquitin carrier protein). Discussed by Wang et al. 2008 [PMID: 18493050] as SAE2, XP_001690945. ChromoDB DMT3402 g6825.t1,Cre06.g294850.t1.1,UBC10 PF00179 PTHR24067:SF33,PTHR24067 KOG0419 6.3.2.19 K10573 GO:0016881 AT2G02760.1 ATUBC2,UBC2 ubiquiting-conjugating enzyme 2 Cre15.g634500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g15296.t1 - - - - - - - - - Cre14.g616100 FKB11,FKB53 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase), similar to A4g25340t(FKBP53, except that N-terminal domain is rich in acidic residues; probably cytosolic [PMID: 15701785] g14843.t1,FKB11 PF00254,PF03066 PTHR10516 KOG0552 5.2.1.8 K01802 GO:0006457,GO:0003676 AT4G25340.1 ATFKBP53,FKBP53 FK506 BINDING PROTEIN 53 Cre16.g682750 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g16447.t1,Cre16.g682750.t1.1 - - - - - - - - - Cre09.g406900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g10087.t1,Cre09.g406900.t1.1 - - - - - - - - - Cre17.g735450 SUB14 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - - - - g17792.t1,SUB14 PF00082 PTHR10795,PTHR10795:SF157 - - - GO:0004252,GO:0006508 AT4G26330.1 ATSBT3.18,UNE17 Subtilisin-like serine endopeptidase family protein Cre02.g095800 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1945.t1,Cre02.g095800.t1.1 - - - - - - - - - Cre12.g546500 TEF22 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 17 Predicted protein Protein with unknown function, mitochondrial localization assumed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018] g13625.t1,Cre12.g546500.t1.1,TEF22 PF03351,PF03188 PTHR23130 - - - GO:0016021 AT3G07570.1 - Cytochrome b561/ferric reductase transmembrane with DOMON related domain Cre09.g396150 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g9366.t2, g9366.t1 - - - - - - - - - Cre02.g098800 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 - - g2009.t1,Cre02.g098800.t1.1 PF07912,PF07749 PTHR12211 - - K09586 GO:0005788,GO:0009306,GO:0005783 AT2G47470.1 ATPDI11,ATPDIL2-1,MEE30,PDI11,UNE5 thioredoxin family protein Cre14.g621450 RPL5 - 0 1 1.0 nan 0 1 1.0 nan O n - - Ribosomal protein L5, component of cytosolic 80S ribosome and 60S large subunit Cytosolic 80S ribosomal protein L5; Cytosolic 60S large ribosomal subunit protein L5 g14976.t1,Cre14.g621450.t1.1 PF00861 PTHR23410 KOG0875 - K02932 GO:0003735,GO:0005622,GO:0005840,GO:0006412,GO:0008097 AT5G39740.1 OLI7,RPL5B ribosomal protein L5 B Cre03.g156600 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g3197.t1,Cre03.g156600.t1.1 - - - - - - AT3G21200.1 PGR7 proton gradient regulation 7 Cre16.g695350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g15561.t1 - - - - - - - - - Cre03.g155550 DNJ18 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 11 DnaJ-like protein DnaJ-like protein; perhaps targeted to chloroplast, since it contains N-terminal extension which is predicted by ChloroP to be cp transit peptide; contains N-terminal J-domain (pfam00226), C-terminus shows weak homology with Desulfovibrio vulgaris Q727D7 g3173.t1,Cre03.g155550.t1.1 PF00226 PTHR24077,PTHR24077:SF17 - - - GO:0031072 AT2G22360.1 - DNAJ heat shock family protein Cre17.g746447 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g18045.t1 - - - - - - - - - Cre03.g154600 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g3150.t1,Cre03.g154600.t1.1 - - - - - - AT5G52970.1 - thylakoid lumen 15.0 kDa protein Cre12.g538250 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g13234.t1 - - - - - - - - - Cre12.g530400 IRT1,ZIP11 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - Iron-nutrition responsive ZIP family transporter Related to bacterial zupT homologs; physically linked to IRT2; (CrZIP11); PMID: 15710683; PMID: 16766055. Cis-acting regulatory elements were characterized by Fei et al. 2009 [PMID: 19351705]. g13056.t1,Cre12.g530400.t1.1,IRT1,ZIP11 PF02535 PTHR11065:SF4,PTHR11065 KOG2474 - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 AT3G20870.1 ZTP29 ZIP metal ion transporter family Cre06.g270350 AMYB2,AMB2 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 17 Beta-amylase Beta-Amylase (alpha 1,4-glucan maltohydrolase; EC 3.2.1.2) hydrolyzes the alpha 1,4-glucosidic linkages of starch from the nonreducing ends. Previously annotated as AMYB2 g6066.t1,AMB2 PF01373 - - - - GO:0000272,GO:0016161 AT5G55700.1 BAM4,BMY6 beta-amylase 4 Cre17.g743547 - 0 11 1.0 1.0 0 11 1.0 1.0 O n upregulated 2 - - g17986.t1,Cre20.g761050.t1.1,Cre20.g761050.t1.2 PF01061,PF00005 PTHR19241,PTHR19241:SF23 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT5G06530.1 - ABC-2 type transporter family protein Cre12.g524350 HUS1 - 0 5 1.0 1.0 0 5 1.0 1.0 O Y - 9 DNA damage checkpoint protein Forms a sliding clamp complex with Rad9 and Rad1 that mediates repair at sites of DNA damage. g12910.t1 PF04005 - KOG3999 - K10903 - AT1G52530.1 - - Cre16.g674964 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g16726.t1,Cre01.g066150.t1.1,Cre01.g066150.t1.2 PF02678,PF05726 PTHR13903 - - K06911 - AT2G43120.1 - RmlC-like cupins superfamily protein Cre16.g680944 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g16145.t1,Cre01.g064150.t1.1 PF01926 PTHR11089:SF7,PTHR11089 KOG1424 3.6.1.- K14539 GO:0005525,GO:0005622 AT2G27200.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre10.g436200 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - - - g10755.t1 - - - - - - - - - Cre14.g629283 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 1 - - g15156.t1,Cre14.g629283.t1.1 PF02137 PTHR10910:SF16,PTHR10910 - - - GO:0003723,GO:0004000,GO:0006396 AT1G01760.1 - adenosine deaminases;RNA binding;RNA binding;adenosine deaminases Cre07.g332500 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g7735.t1,Cre07.g332500.t1.1 PF03407 PTHR10994:SF5,PTHR10994 - - - GO:0005783 AT2G35610.1 XEG113 xyloglucanase 113 Cre12.g525400 PTK15 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g12930.t1,PTK15 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G24715.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre16.g661300 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 13 - - g15969.t1, g15969.t2 PF01152 - KOG0487 - - GO:0015671,GO:0019825 - - - Cre01.g042000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g942.t1,Cre01.g042000.t1.1 PF00612,PF00023 - KOG4214 - - GO:0005515 - - - Cre06.g262850 RAB23 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 Small Rab-related GTPase Expressed Protein. Rab-type GTPase, similar to the Rab23-type (not found in land plants). g5904.t1,Cre06.g262850.t1.1,RAB23 PF00071 PTHR24073,PTHR24073:SF163 KOG4252 - K06234 - AT5G59840.1 - Ras-related small GTP-binding family protein Cre14.g613652 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 3 - - g14787.t1 - - - - - - - - - Cre02.g113250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g2332.t1 PF00400 PTHR22840 KOG2444 - - - AT2G34260.1 - transducin family protein / WD-40 repeat family protein Cre02.g074800 CYG9 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 18 Adenylate/guanylate cyclase Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g1336.t1,CYG9, g1336.t2,CYG9 PF00211 PTHR11920:SF147,PTHR11920 KOG0845 - - GO:0009190,GO:0016849,GO:0035556 - - - Cre02.g119550 NIP1 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 NaCl-inducible protein Present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018] but TargetP predicts mitochondrial localization; Volvox homolog NipA is NaCl-inducible [PMID: 17184518] g2482.t1,Cre02.g119550.t1.1,NIP1 - - - - - - - - - Cre09.g402108 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n - 16 - - g10009.t1 PF12166 PTHR13167:SF30,PTHR13167 - - - - AT2G48060.1 - - Cre03.g167050 PDX3 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3428.t1,PDX3 - - - - - - AT1G16080.1 - - Cre03.g167051 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 4 - - g3429.t1,Cre03.g167051.t1.1 PF01174 - KOG3210 2.6.-.- K08681 - AT5G60540.1 ATPDX2,EMB2407,PDX2 pyridoxine biosynthesis 2 Cre09.g388450 ELG29 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n downregulated 8 Exostosin-like glycosyltransferase Seems to belong to the family of exostosin-like glycosyltransferases g9531.t1,ELG29 PF07801 PTHR11062,PTHR11062:SF16 - - - - AT5G04500.1 - glycosyltransferase family protein 47 Cre16.g657050 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g15879.t1,Cre16.g657050.t1.1 - - - - - - - - - Cre09.g398808 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 8 - - g9902.t1,Cre02.g135800.t1.1 PF01465 - KOG4674 - - GO:0005515 AT5G66030.1 ATGRIP,GRIP Golgi-localized GRIP domain-containing protein Cre13.g570400 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 2 - - g14031.t1,Cre13.g570400.t1.1 PF10208 PTHR12990:SF5,PTHR12990 - - - - AT5G43860.1 ATCLH2,CLH2 chlorophyllase 2 Cre07.g323150 TEH4 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 16 - - g7465.t1,Cre07.g323150.t1.1,TEH4 PF03061 - - - - - - - - Cre16.g681690 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g16788.t1,Cre01.g068800.t1.1,Cre01.g068800.t1.2 - - - - - - - - - Cre07.g337933 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g7862.t1 - - - - - - - - - Cre02.g116150 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g2404.t1 PF04488 - - 2.4.1.232 K05528 - - - - Cre17.g702600 PTK5 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 2 Putative tyrosine kinase Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g17033.t1,PTK5 PF00069 PTHR23257:SF338,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre07.g329900 COP - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 16 - - g7678.t1,COP PF00512,PF00072,PF01036,PF02518,PF07647,PF00211 PTHR24423 - - - GO:0000155,GO:0007165,GO:0016020,GO:0000156,GO:0000160,GO:0006355,GO:0005216,GO:0006811,GO:0005524,GO:0005515,GO:0009190,GO:0016849,GO:0035556 AT2G01830.2 AHK4,ATCRE1,CRE1,WOL,WOL1 CHASE domain containing histidine kinase protein Cre02.g143567 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g2838.t1,Cre38.g785600.t1.1,Cre38.g785600.t1.2 PF08560 - - - - - - - - Cre12.g556905 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 9 - - g13390.t1,Cre12.g556905.t1.1 - - - - - - - - - Cre17.g746997 ADH1 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 8 Dual function alcohol/acetaldehyde dehydrogenase Dual function alcohol dehydrogenase / acetaldehyde dehydrogenase [EC:1.1.1.1 /1.2.1.10], probably mitochondrial [PMID: 14756315]. Consolidates 3 previous v3 models, probably correctly g18056.t1,Cre20.g758200.t1.1,Cre20.g758200.t1.2,ADH1 PF00465,PF00171 PTHR11496:SF46,PTHR11496 KOG3857 1.1.1.1,1.2.1.10 K04072 GO:0016491,GO:0046872,GO:0055114,GO:0008152 AT3G24503.1 ALDH1A,ALDH2C4,REF1 aldehyde dehydrogenase 2C4 Cre03.g180151 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g3734.t1,Cre03.g180150.t1.2 PF00514 PTHR23315 - - - GO:0005515 AT5G67340.1 - ARM repeat superfamily protein Cre04.g217200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g4521.t1 - - - - - - - - - Cre08.g378800 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 15 - - g8916.t1,Cre08.g378800.t1.1 PF00320 - - - - GO:0003700,GO:0006355,GO:0008270,GO:0043565 AT5G47140.1 GATA27 GATA transcription factor 27 Cre01.g050050 GUM1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g1107.t1,Cre01.g050050.t1.1,GUM1 PF00023 PTHR15047 KOG1709 - - GO:0005515 AT5G65860.1 - ankyrin repeat family protein Cre14.g624550 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 12 - - g15047.t1 - - - - - - - - - Cre10.g435850 CPLD24 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 6 Predicted protein Conserved expressed protein, perhaps chloroplast targeted g10747.t1,Cre10.g435850.t1.1 - - - - - - AT1G16080.1 - - Cre17.g726200 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g17560.t1,Cre17.g726200.t1.1 - - - - - - - - - Cre02.g118000 PHR6 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 6 - - g2448.t1,Cre02.g118000.t1.1,PHR6 PF03441,PF00875 PTHR10211 - - - GO:0003904,GO:0006281,GO:0003913 AT1G12370.2 PHR1,UVR2 photolyase 1 Cre09.g401450 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9236.t1 - - - - - - - - - Cre06.g301150 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g6967.t1 - - KOG1003 - - - - - - Cre08.g372350 FAP188 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g8721.t1 - - - - - - - - - Cre17.g716600 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 10 - - g17347.t1, g17347.t2 - - - - - - - - - Cre06.g304500 ZYS4,ZYS3-2,EZY9 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 Zygote-specific protein Very similar to ZYS3, a zygote-specific protein [PMID: 10069826]. Previously annotated as ZYS3-2. Also known as EZY9 for early zygote formation expression [PMID: 18487630] g7049.t1,Cre06.g304500.t1.1,EZY9,ZYS3-2,ZYS4 PF00023,PF00397 - KOG4214 - - GO:0005515 AT2G47450.1 CAO,CPSRP43 chloroplast signal recognition particle component (CAO) Cre07.g349850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g8139.t1,Cre07.g349850.t1.1 PF00400 PTHR22844 KOG0640 - - - AT2G33340.1 MAC3B MOS4-associated complex 3B Cre12.g521400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g12845.t1,Cre12.g521400.t1.1 PF07685 - - - - GO:0003824,GO:0009236 - - - Cre01.g049132 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g1091.t1, g1091.t2,Cre01.g049132.t1.1 PF01582,PF07647 PTHR23315 KOG4224 - - GO:0004888,GO:0007165,GO:0031224,GO:0045087,GO:0005515 AT2G44900.1 ARABIDILLO-1 ARABIDILLO-1 Cre17.g712771 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g17259.t1 - - - - - - - - - Cre14.g609750 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 18 - - g14698.t1 PF03351 - KOG4743 - - - - - - Cre13.g605404 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g14603.t1 - - - - - - - - - Cre01.g011901 ARS7 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 15 - - g295.t1,Cre01.g011900.t1.3,ARS7 PF00884 PTHR10342:SF2,PTHR10342 - 3.1.6.14 K01137 GO:0008152,GO:0008484 - - - Cre01.g036200 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g814.t1,Cre01.g036200.t1.1 PF07228,PF01477 PTHR12320 KOG1379 - - GO:0003824,GO:0005515 AT4G16580.1 - Protein phosphatase 2C family protein Cre02.g117200 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g2427.t1,Cre02.g117200.t1.1 PF02449 - - - - GO:0004565,GO:0005975,GO:0009341 - - - Cre10.g424000 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 14 - - g10485.t1 - - - - - - - - - Cre13.g584135 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g14340.t1,Cre13.g584150.t1.3 - - - - - - - - - Cre03.g146347 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g2982.t1,Cre01.g061350.t1.1,Cre01.g061350.t1.2 PF02373 - - - - - - - - Cre13.g588800 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g14445.t1,Cre13.g588800.t1.1 - - - - - - - - - Cre03.g204050 ELG6 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 11 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g4235.t1,ELG6 PF03016 PTHR11062,PTHR11062:SF14 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre13.g583787 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g14332.t1 - - - - - - - - - Cre04.g216150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g4646.t1,Cre04.g216150.t1.1 PF05250 - - - - - - - - Cre09.g397050 - 0 15 1.0 1.0 0 15 1.0 1.0 O n - 18 - - g9343.t1 - PTHR10919:SF226,PTHR10919 - - - - - - - Cre10.g466700 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g11438.t1 PF03171 PTHR10209 KOG0143 - K06892 GO:0016491 AT1G35190.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre07.g331050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g7702.t2, g7702.t1 PF00439 - - - - GO:0005515 - - - Cre04.g226811 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 5 - - g4964.t2,Cre04.g226811.t1.1, g4964.t1 - - - - - - - - - Cre14.g632791 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 - - g15251.t1 - - KOG3200 - K10768 - AT4G20350.2 - oxidoreductases Cre12.g499500 SAC3 - 0 1 1.0 nan 0 1 1.0 nan O n - - Sulfur acclimation protein, Snf1-like Ser/Thr protein kinase Sulfur acclimation protein 3, Snf1-like serine/threonine kinase; positive and negative regulator of sulfur deficiency responses; NCBI accessions AF100162 (mRNA) and AAC98509 (protein) [PMID: 10368187] g12589.t1 PF00069 PTHR24343,PTHR24343:SF58 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT1G78290.2 SNRK2-8,SNRK2.8,SRK2C Protein kinase superfamily protein Cre03.g153400 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 16 - - g3125.t1,Cre03.g153400.t1.1 PF00561 PTHR10992,PTHR10992:SF209 - - - - - - - Cre12.g515250 ROC7 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12712.t1,ROC7 PF09758 PTHR21481 - - - - AT3G28430.1 - - Cre13.g563550 IPP8 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g13867.t1,IPP8 PF00168,PF03372 PTHR11200:SF56,PTHR11200 KOG0565 3.1.3.56 K01106 GO:0005515 AT1G05630.1 5PTASE13,AT5PTASE13 Endonuclease/exonuclease/phosphatase family protein Cre07.g346500 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g8062.t1,Cre07.g346500.t1.1 - - - - - - - - - Cre14.g612426 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g14759.t1 - - - - - - - - - Cre07.g347450 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g8085.t1,Cre07.g347450.t1.1 PF01753 - - - - GO:0008270 - - - Cre17.g710600 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 11 - - g17208.t1,Cre17.g710600.t1.1 PF00069,PF07714 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre07.g357200 UGD1,EZY12 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 UDP-glucose dehydrogenase Early zygote expressed protein activated upon fus mating [PMID: 18487630] belonging to the UDP-glucose/GDP-mannose dehydrogenase family. Found in the flagellar proteome [PMID: 15998802] g8306.t1,Cre07.g357200.t1.1,EZY12,UGD1 PF00984,PF03720,PF03721 PTHR11374 KOG2666 1.1.1.22 K00012 GO:0016616,GO:0051287,GO:0055114 AT1G26570.1 ATUGD1,UGD1 UDP-glucose dehydrogenase 1 Cre08.g376150 CGL150 - 0 1 1.0 nan 0 1 1.0 nan O Y - 2 - - g8861.t2, g8861.t1 PF01866 PTHR10762:SF2,PTHR10762 KOG2648 - - GO:0017183,GO:0005737 AT3G59630.1 - diphthamide synthesis DPH2 family protein Cre10.g446950 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g10994.t1 PF02213,PF00397 - - - - GO:0005515 - - - Cre06.g257950 AST4 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 4 Aspartate aminotransferase Putative aspartate aminotransferase (EC 2.6.1.1); weak Target-P prediction of mitochondrial targeting; homology also predicts mitochondrial location, Found in the mitochondrial proteomic survey. g5798.t1,Cre06.g257950.t1.1 PF00155 PTHR11879 KOG1411 2.6.1.1 K14455 GO:0006520,GO:0008483,GO:0009058,GO:0016769,GO:0030170 AT2G30970.1 ASP1 aspartate aminotransferase 1 Cre17.g718468 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 - - g17388.t1,Cre17.g718468.t1.1 PF05548 - - - - - - - - Cre14.g611484 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 13 - - g14739.t2, g14739.t3, g14739.t1 - - - - - - - - - Cre17.g729450 CLV2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 3 - - g17630.t1,Cre17.g729450.t1.1,CLV2 PF00571,PF00654 PTHR11689:SF46,PTHR11689 KOG0474 - K05016 GO:0005515,GO:0005247,GO:0006821,GO:0016020,GO:0055085 AT5G26240.1 ATCLC-D,CLC-D chloride channel D Cre05.g241851 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5319.t1, g5319.t3, g5319.t2, g5319.t4 PF03372,PF00078 PTHR13078,PTHR13078:SF14 KOG1995 - - GO:0003723,GO:0003964,GO:0006278 - - - Cre12.g549150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g13565.t1 - - - - - - AT4G38710.2 - glycine-rich protein Cre02.g078650 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 13 - - g1427.t1 PF07687,PF01546 PTHR11014:SF15,PTHR11014 KOG2276 - - GO:0016787,GO:0008152 AT1G44820.1 - Peptidase M20/M25/M40 family protein Cre02.g073600 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g1303.t1 - - - - - - - - - Cre02.g101900 EXN6 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g2080.t1,EXN6 PF01612 PTHR13620 - - - GO:0003676,GO:0005622,GO:0006139,GO:0008408 AT3G12410.1 - Polynucleotidyl transferase, ribonuclease H-like superfamily protein Cre05.g248500 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 Mitochondrial thioredoxin o Thioredoxin o, mitochondrial thioredoxin (by homology), putative N-terminal transit peptide for targeting to mitochondria (Lemaire et al (2003) Plant Physiol. Biochem. 41, 513-521; also PMID: 11717467). g5162.t1,Cre05.g248500.t1.1 PF00085 PTHR10438:SF57,PTHR10438 KOG0907 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT5G39950.1 ATH2,ATTRX2,ATTRXH2,TRX2,TRXH2 thioredoxin 2 Cre03.g144647 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g2896.t1,Cre60.g792200.t1.1 - - - - - - - - - Cre13.g565250 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13906.t1,Cre13.g565250.t1.1 PF00582 - - - - GO:0006950 AT5G54430.1 ATPHOS32,PHOS32 Adenine nucleotide alpha hydrolases-like superfamily protein Cre05.g242500 RSP4 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 Radial spoke protein 4 Flagellar radial spoke protein 4 (RSP4), a component of the radial spoke head; gene originally termed PF1 [PMID: 7204490; PMID: 1508197; PMID: 16507594; GI:401050] g5301.t1,Cre05.g242500.t1.1 PF04712 PTHR13159 - - - - - - - Cre05.g242502 - 0 1 1.0 nan 0 1 1.0 nan C n - 2 - - g5303.t2, g5303.t1 - - - - - - - - - Cre12.g554350 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g13446.t1,Cre12.g554350.t1.1 - - - - - - - - - Cre12.g538400 RPB4,RPB7B - 0 1 1.0 nan 0 1 1.0 nan O n - 11 DNA-directed RNA polymerase II, 19 kDa polypeptide N-terminal portion similar to yeast RNB7 (DNA-directed RNA polymerase subunit), 19 kDa subunit. Previously annotated as RPB7B (RPB4 was missing from previous catalog, so filled it in with this gene model) g13238.t1,Cre12.g538400.t1.1,RPB4,RPB7B PF08292,PF03876 PTHR12709,PTHR12709:SF2 KOG3297 2.7.7.6 K03022 GO:0003899,GO:0006351 AT1G06790.1 - RNA polymerase Rpb7 N-terminal domain-containing protein Cre07.g315350 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 16 - - g7296.t1,Cre07.g315350.t1.1 PF00566 PTHR22957,PTHR22957:SF72 - - - GO:0005097,GO:0005622,GO:0032313 AT3G02460.1 - Ypt/Rab-GAP domain of gyp1p superfamily protein Cre03.g189350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g3921.t1,Cre03.g189350.t1.1 - - - - - - AT2G36145.1 - - Cre12.g485350 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 14 - - g12044.t2,Cre12.g485350.t1.1, g12044.t1 - - - - - - - - - Cre11.g476250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 17 - - g11829.t1,Cre11.g476250.t1.1 PF00097 PTHR14155 - - - - AT4G11680.1 - Zinc finger, C3HC4 type (RING finger) family protein Cre05.g244900 - 0 1 1.0 nan 0 1 1.0 nan M n - 18 - - g5235.t1 PF01594 PTHR21716 - - - - - - - Cre03.g204602 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g4224.t1 - - - - - - - - - Cre09.g417000 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g10319.t1,Cre09.g417000.t1.1 PF05686 PTHR12203,PTHR12203:SF13 - - - - AT2G45840.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre16.g689550 PTK8 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 Putative tyrosine kinase Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g16186.t1,PTK8 PF07714 PTHR23257 - - - GO:0004672,GO:0006468 AT2G17700.1 - ACT-like protein tyrosine kinase family protein Cre08.g377400 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - - - g8887.t1 PF01753 - - - - GO:0008270 AT4G31670.1 UBP18 ubiquitin-specific protease 18 Cre12.g547400 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g13604.t1 PF00903 - KOG2944 - - - - - - Cre05.g238270 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g5486.t1 - PTHR16275 - - - - - - - Cre10.g420800 FAP46 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 14 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g10414.t1 - - - - - - - - - Cre07.g329861 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g7676.t1,Cre07.g329861.t1.1 - - - - - - - - - Cre02.g089850 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 - - g1678.t1,Cre02.g089850.t1.1, g1678.t2 PF08512 - - - - - AT3G28730.1 ATHMG,HMG,NFD,SSRP1 high mobility group Cre17.g704400 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 8 - - g17076.t1 PF01753 PTHR12298,PTHR12298:SF13 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre03.g172500 PTOX2,PTO2 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 8 Plastid terminal oxidase Alternative oxidase, possibly chloroplast-localized. Previously annotated as PTOX2 g3557.t1,PTO2 PF01786 - - - - GO:0005740,GO:0007585,GO:0055114 AT4G22260.1 IM,IM1 Alternative oxidase family protein Cre16.g665328 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g16058.t1 - - - - - - - - - Cre12.g531200 FOX2 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 16 Multicopper ferroxidase Multicopper ferroxidase-like protein g13074.t1 PF07731,PF07732 PTHR10127,PTHR10127:SF48 - 1.16.3.1 K13624 GO:0005507,GO:0016491,GO:0055114 AT5G05390.1 LAC12 laccase 12 Cre06.g294700 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g6821.t1 PF01477 PTHR10877 KOG0978 - - GO:0005515 AT1G05320.1 - - Cre10.g419100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g10375.t1 - - KOG0487 - - - - - - Cre13.g568467 - 0 3 1.0 1.0 0 3 1.0 1.0 - n - 14 - - g13989.t1, g13989.t2 - - - - - - - - - Cre01.g035250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g795.t1,Cre01.g035250.t1.1 - - - - - - - - - Cre16.g653500 - 0 1 1.0 nan 0 1 1.0 nan M n - 2 - - g15803.t1 - - - - - - - - - Cre07.g314400 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 15 - - g7274.t1 PF00580 PTHR11070 - 3.6.4.12 K03657 GO:0003677,GO:0004003,GO:0005524,GO:0006281 AT4G25120.1 ATSRS2,SRS2 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre03.g191400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g3961.t1,Cre03.g191400.t1.1 - - - - - - - - - Cre03.g170625 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g3515.t1,Cre03.g170635.t1.2 - - - - - - - - - Cre01.g030600 MAPKKK4 - 0 11 1.0 1.0 0 11 1.0 1.0 M n downregulated 15 Mitogen-Activated Protein Kinase Kinase Kinase MAPKKK4; MAP (Mitogen-Activated) Kinase Kinase Kinase Homolog 4; MEK Kinase 4; MAP3K4 g693.t1,MAPKKK4 PF00069 PTHR23257,PTHR23257:SF335 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre16.g688201 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g16324.t2,Cre16.g688155.t1.2, g16324.t1,Cre16.g688155.t2.1 - - - - - - - - - Cre14.g627800 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15124.t1,Cre14.g627800.t1.1 PF00023,PF00887 PTHR23310,PTHR23310:SF14 KOG0817 - - GO:0005515,GO:0000062 AT4G27780.1 ACBP2 acyl-CoA binding protein 2 Cre03.g205150 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g4210.t1,Cre03.g205150.t1.1 - - - - - - - - - Cre11.g480851 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 10 - - g11937.t1 PF03407 PTHR10994:SF3,PTHR10994 - - - GO:0005783 AT1G19360.1 - Nucleotide-diphospho-sugar transferase family protein Cre08.g378650 CGl131 - 0 1 1.0 nan 0 1 1.0 nan O Y - 6 - - g8913.t1,Cre08.g378650.t1.1 PF04115 - - - - GO:0000256,GO:0004848 AT2G35830.2 - - Cre11.g481104 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - - - - g11944.t1 PF00069 PTHR24347 - - - GO:0004672,GO:0005524,GO:0006468 AT1G12580.1 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 Cre11.g475700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 18 - - g11817.t1 - - - - - - - - - Cre10.g452900 SMY2 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 13 - - g11122.t1,Cre10.g452900.t1.1,SMY2 PF03372 PTHR12393 - - - - - - - Cre04.g225176 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g4921.t1 - - - - - - - - - Cre06.g277000 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g6209.t1,Cre06.g277000.t1.1 PF01529 PTHR22883 KOG1315 - - GO:0008270 AT3G09320.1 - DHHC-type zinc finger family protein Cre12.g488850 AP2A1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Alpha2-Adaptin Expressed protein. Alpha2-Adaptin, clathrin adaptor complex large subunit, putative member of AP-2 complex g12209.t2,AP2A1, g12209.t1,AP2A1 PF01602,PF02883 PTHR22780,PTHR22780:SF4 KOG1077 - K11824 GO:0006886,GO:0016192,GO:0030117,GO:0030131 AT5G22770.1 alpha-ADR alpha-adaptin Cre10.g463700 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g11363.t1 PF09184 PTHR16487 - - - - AT5G17070.1 - - Cre06.g255626 - 0 1 1.0 nan 0 1 1.0 nan - n - 10 - - g5745.t1 - - - - - - - - - Cre01.g030750 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 18 - - g696.t1 - - - - - - - - - Cre05.g232002 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 14 - - g5140.t1, g5140.t2 PF01756,PF02770,PF00441 PTHR10909,PTHR10909:SF94 KOG0135 1.3.3.6 K00232 GO:0003997,GO:0005777,GO:0006635,GO:0055114,GO:0003995,GO:0016627 AT5G65110.1 ACX2,ATACX2 acyl-CoA oxidase 2 Cre01.g017400 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g412.t1, g412.t2 - - - - - - - - - Cre05.g232004 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g5142.t1 PF00035 - - - - GO:0003725,GO:0005622 - - - Cre12.g504250 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 15 - - g12484.t1 PF00069 PTHR23257,PTHR23257:SF281 KOG0983 - - GO:0004672,GO:0005524,GO:0006468 AT4G31170.1 - Protein kinase superfamily protein Cre02.g120100 RBCS1 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 6 Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 1, chloroplast precursor Ribulose bisphosphate carboxylase/oxygenase small subunit 1 [PMID: 3820291; PMID: 521455; PMID: 11641402] g2494.t1,Cre02.g120100.t1.1 PF00101 - - 4.1.1.39 K01602 GO:0015977,GO:0016984 AT1G67090.1 RBCS1A ribulose bisphosphate carboxylase small chain 1A Cre03.g163500 CGLD21 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 3 Predicted protein Conserved protein g3352.t1,Cre03.g163500.t1.1 PF12014 - - - - - AT1G27510.1 - Protein of unknown function (DUF3506) Cre03.g146647 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g2997.t1 - - - - - - - - - Cre10.g450900 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g11081.t1,Cre10.g450900.t1.1 PF09353 - - - - - - - - Cre01.g005534 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g133.t1,Cre01.g005534.t1.1 - - - - - - - - - Cre13.g582150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14294.t1,Cre13.g582150.t1.1 - - - - - - - - - Cre12.g487900 FDX9 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 13 - - g12229.t1,Cre12.g487900.t1.1,FDX9 PF00111 - - - - GO:0009055,GO:0051536 AT1G10960.1 ATFD1,FD1 ferredoxin 1 Cre17.g738450 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 7 - - g17861.t1 PF00400 PTHR22844 KOG0294 - - - AT1G24530.1 - Transducin/WD40 repeat-like superfamily protein Cre09.g390393 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9667.t2, g9667.t1 PF01713 PTHR13308 - - - - AT5G23520.1 - smr (Small MutS Related) domain-containing protein Cre06.g304750 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7054.t1,Cre06.g304750.t1.1 PF01412 PTHR23180,PTHR23180:SF31 KOG0703 - K12486 GO:0008060,GO:0008270,GO:0032312 AT5G54310.1 AGD5,NEV ARF-GAP domain 5 Cre02.g143800 SRH3 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 11 - - g2607.t1,SRH3 PF00176,PF00271 PTHR10799,PTHR10799:SF65 - - - GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT1G03750.1 CHR9 switch 2 Cre03.g178900 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 9 - - g3703.t1 - - - - - - - - - Cre13.g604150 - 0 5 1.0 1.0 0 5 1.0 1.0 M n upregulated 4 - - g14576.t1,Cre13.g604150.t1.1 PF00664,PF00005 PTHR24221,PTHR24221:SF68 KOG0057 - - GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT4G28620.1 ATATM2,ATM2 ABC transporter of the mitochondrion 2 Cre16.g657500 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g15888.t1,Cre16.g657500.t1.1 - - - - - - - - - Cre04.g219300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 4 - - g4779.t1,Cre04.g219300.t1.1 PF02958 - - - - - - - - Cre08.g366950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g8599.t1,Cre08.g366950.t1.1 - - - - - - - - - Cre09.g390023 CRR1 - 0 1 1.0 nan 0 1 1.0 nan O n - 18 Copper responsive regulator 1 Copper responsive regulator 1; SBP domain containing, ankyrin repeats [gi:63145978; PMID: 16352720] g9657.t1,Cre02.g125250.t1.1,CRR1 PF03110 - - - - GO:0003677,GO:0005634 AT2G47070.1 SPL1 squamosa promoter binding protein-like 1 Cre03.g201350 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g4296.t1 - - - - - - - - - Cre16.g690879 FAP173 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g16870.t1 PF01145 PTHR10264,PTHR10264:SF25 - - - GO:0016020 AT5G62740.1 ATHIR1,HIR1 SPFH/Band 7/PHB domain-containing membrane-associated protein family Cre07.g340900 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g7977.t1,Cre07.g340900.t1.1 PF03641 - - - K06966 - AT5G06300.1 - Putative lysine decarboxylase family protein Cre06.g303300 CYN37 - 0 1 1.0 nan 0 1 1.0 nan O Y - 6 Putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type - g7023.t1,Cre06.g303300.t1.1 PF00160 - - - - GO:0003755,GO:0006457 AT3G15520.1 - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Cre16.g671050 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g16298.t1,Cre16.g671050.t1.1 PF01753 - - - - GO:0008270 AT5G65450.1 UBP17 ubiquitin-specific protease 17 Cre06.g283800 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 10 - - g6598.t1,Cre06.g283800.t1.1 - - - - - - - - - Cre17.g724050 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g17511.t1 - - - - - - - - - Cre09.g411525 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g10189.t1,Cre09.g411550.t3.1, g10189.t3,Cre09.g411550.t2.1, g10189.t2,Cre09.g411550.t1.3 PF00069,PF07714 PTHR23257:SF355,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre08.g363200 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g8505.t1,Cre08.g363200.t1.1 - - - - - - - - - Cre06.g261026 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 9 - - g5867.t1 - - - - - - AT3G01510.1 LSF1 like SEX4 1 Cre09.g403200 FAP198 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; cytochrome b5-like domain in the N terminal part of the protein; found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by def g9198.t1,Cre09.g403200.t1.1, g9198.t2 PF00173 PTHR21281 KOG0537 - - GO:0020037 AT2G46210.1 - Fatty acid/sphingolipid desaturase Cre10.g427000 MOC2 - 0 8 1.0 1.0 0 8 1.0 1.0 O Y - 8 Predicted protein, possibly a mitochondrial transcription termination factor Putative mTERF domain containing protein; possibly a mitochondrial transcription termination factor g10550.t1,Cre10.g427000.t1.1 PF02536 PTHR13068 KOG1267 - - - AT2G44020.1 - Mitochondrial transcription termination factor family protein Cre02.g081500 UAA2 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g1492.t1,Cre02.g081500.t1.1,UAA2 PF08449 PTHR10778:SF8,PTHR10778 KOG1582 - - GO:0055085 AT4G23010.1 ATUTR2,UTR2 UDP-galactose transporter 2 Cre01.g014350 PRX5 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 5 Peroxiredoxin, type II Peroxiredoxin Type II, thioredoxin dependent peroxidase, N-terminal sequence predicted as a mitochondrial targeting signal BUT the protein is more closely related to chloroplastic type II PRX from Arabidopsis (AtPRXIIE). g349.t1,Cre01.g014350.t1.1 PF08534 PTHR10430 KOG0541 - - GO:0016491 AT3G52960.1 - Thioredoxin superfamily protein Cre16.g682950 RAD9 - 0 5 1.0 1.0 0 5 1.0 1.0 SP Y - 10 DNA damage checkpoint protein Forms a sliding clamp complex with Hus1 and Rad1 that mediates repair at sites of DNA damage. Homolog of yeast DDC1 [PMID: 17992532] g16443.t1 PF04139 - - - - GO:0006281 AT3G05480.1 ATRAD9,RAD9 cell cycle checkpoint control protein family Cre10.g426750 CYP29,CYP739A5 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 Cytochrome P450, CYP120 superfamily Cytochrome P450, CYP120 superfamily. The CYP85 clan families CYP85 and CYP90 make brassinosteroids in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols. Previously annotated as CYP739A5 g10545.t1,Cre10.g426750.t1.1,CYP29 PF00067 PTHR24286 KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT4G19230.2 CYP707A1 cytochrome P450, family 707, subfamily A, polypeptide 1 Cre02.g082550 ZEP,ZEP1 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 7 Zeaxanthin epoxidase Zeaxanthin epoxidase, chloroplast precursor (ABA1) (NPQ2) [PMID: 12671093]. Previously annotated as ZEP g1513.t1,Cre02.g082550.t1.1,ZEP PF00498,PF01494 PTHR13789:SF10,PTHR13789 KOG2614 1.14.13.90 K09838 GO:0005515,GO:0004497,GO:0055114 AT5G67030.1 ABA1,ATABA1,ATZEP,IBS3,LOS6,NPQ2,ZEP zeaxanthin epoxidase (ZEP) (ABA1) Cre02.g093550 CYG44 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - Adenylate/guanylate cyclase C terminal domain similar to Guanylyl Cyclase family member (gcy-4) [Caenorhabditis elegans] g1766.t1 PF00211 PTHR11920:SF149,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre03.g175500 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 12 - - g3623.t1,Cre03.g175500.t1.1 PF03073 PTHR10057 KOG3797 - - GO:0016021 - - - Cre14.g615150 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g14820.t1 PF00397 - - - - GO:0005515 - - - Cre06.g311200 MFT21 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g7200.t1,MFT21 PF07690 PTHR24003,PTHR24003:SF22 KOG1330 - - GO:0016021,GO:0055085 AT4G36790.1 - Major facilitator superfamily protein Cre06.g279400 CPY - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g6496.t1,Cre06.g279400.t1.1,CPY PF00450 PTHR11802 KOG1282 3.4.16.5 K13289 GO:0004185,GO:0006508 AT3G45010.1 scpl48 serine carboxypeptidase-like 48 Cre03.g174450 PWR1,CYCC1 - 0 8 1.0 1.0 0 8 1.0 1.0 C n upregulated 5 - - g3599.t1,CYCC1,PWR1 - - - - - - - - - Cre16.g658300 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g15905.t2, g15905.t3, g15905.t1 - - - - - - - - - Cre09.g387689 FAP76 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 13 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g9593.t1,Cre02.g122200.t1.1 - PTHR21444,PTHR21444:SF6 KOG4090 - - - - - - Cre03.g200000 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g4327.t2, g4327.t1,Cre03.g200000.t1.1 - PTHR10183,PTHR10183:SF144 KOG0037 - - - AT5G19360.1 CPK34 calcium-dependent protein kinase 34 Cre09.g397550 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 17 - - g9331.t1 - PTHR23023 - - - - - - - Cre03.g177900 TOB38 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 Complex of the outer membrane that mediates the topogenesis of beta-barrel proteins. Tob38, subunit of 38 kDa of the the TOB complex, that mediates the insertion of beta-barrel proteins into the outer membrane of mitochondria. Also known as TOM37, METAXIN, and SAM38. Similar to yeast Tob38 (YHR083W) and to Arabidopsis Metaxin (At2g19080). g3680.t1,Cre03.g177900.t1.1,TOB38 PF10568 PTHR12289:SF19,PTHR12289 KOG3028 - - GO:0005741,GO:0006626 AT2G19080.1 - metaxin-related Cre13.g602700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 17 - - g14564.t1 PF00400,PF00072 PTHR22847:SF121,PTHR22847 KOG0266 - - GO:0000156,GO:0000160,GO:0006355 AT4G11110.1 SPA2 SPA1-related 2 Cre10.g419350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g10380.t1 - - - - - - - - - Cre01.g052150 ANK2,FAP87 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 Flagellar Associated Protein with ankyrin repeats Flagellar protein with ankyrin repeats; found in the flagellar proteome, where it was designated FAP87 [PMID: 15998802] g1156.t1,ANK2 PF00023 PTHR24198:SF303,PTHR24198 KOG4412 - - GO:0005515 AT5G14230.1 - - Cre12.g548577 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 - - g13803.t1,Cre27.g774950.t1.1 - - - - - - - - - Cre12.g558526 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 13 - - g13358.t1 - - - - - - - - - Cre17.g727500 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - - - - g17588.t1,Cre17.g727500.t1.1 - - - - - - - - - Cre02.g147000 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g2520.t1 - - - - - - - - - Cre12.g485100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g12038.t1,Cre12.g485100.t1.1 - - - - - - - - - Cre17.g731050 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 2 - - g17666.t1,Cre17.g731050.t1.1 PF00005 PTHR12847 KOG2355 - K12608 GO:0005524,GO:0016887 AT5G02270.1 ATNAP9,NAP9 non-intrinsic ABC protein 9 Cre04.g222250 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g4850.t1,Cre04.g222250.t1.1 - - - - - - - - - Cre17.g733050 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17715.t2,Cre17.g733050.t1.1, g17715.t3, g17715.t1 - - - - - - - - - Cre10.g437150 CYCR5,PPR6 - 0 5 1.0 1.0 0 5 1.0 1.0 M n downregulated - Cyclin-related pentatrichopeptide repeat protein Cyclin-related pentatrichopeptide repeat protein. Previously annotated as PPR6 g10773.t1,Cre10.g437150.t1.1,CYCR5 PF00134,PF01535 PTHR24015 KOG0653 - - - AT5G02860.1 - Pentatricopeptide repeat (PPR) superfamily protein Cre12.g554650 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g13441.t1,Cre12.g554650.t1.1 PF04825,PF04824 PTHR12585:SF5,PTHR12585 - - - GO:0005515,GO:0000228 AT5G05490.2 ATREC8,DIF1,REC8,SYN1 Rad21/Rec8-like family protein Cre10.g451450 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 5 - - g11093.t1 PF00069 PTHR23257:SF356,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre16.g664200 PDE33 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 15 - - g16036.t2,PDE33, g16036.t1,PDE33 PF00233,PF03924 PTHR11347:SF75,PTHR11347 - 3.1.4.17 K01120 GO:0004114,GO:0007165 - - - Cre09.g395150 MKP3 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 Dual-specificity protein phosphatase Dual-specificity protein phosphatase. Previously annotated as MKP3 g9388.t1,Cre09.g395150.t1.1,MKP3 PF00782 PTHR10159:SF129,PTHR10159 - 3.1.3.16,3.1.3.48 K14165 GO:0006470,GO:0008138 AT3G23610.2 DSPTP1 dual specificity protein phosphatase 1 Cre14.g625150 PGM8 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 8 - - g15059.t1,PGM8 PF00300 PTHR23029 KOG0235 - - - AT1G08940.1 - Phosphoglycerate mutase family protein Cre07.g327200 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 7 - - g7609.t1 PF00534 - - - - GO:0009058 - - - Cre16.g681450 ANK6 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g16474.t1,Cre16.g681450.t1.1,ANK6 PF00023 PTHR24166:SF272,PTHR24166 KOG4412 - - GO:0005515 AT2G03430.1 - Ankyrin repeat family protein Cre01.g035400 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 7 - - g798.t1 PF00097 PTHR15898:SF4,PTHR15898 KOG4172 - - - AT1G18660.4 - zinc finger (C3HC4-type RING finger) family protein Cre03.g144104 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g2868.t1,Cre01.g056550.t1.1 - - - - - - - - - Cre12.g509850 MLT1,PTX4 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - Multi-eye protein Protein required for eyespot localization; mlt1 mutant cells have multiple eyespots; Lamb et al. 2003 [PMID: 10511552]. The non-phototactic insertional mutant ptx4 described by Pazour et al. 1995 [PMID: 7593169] is an allele at this locus. g12354.t1,MLT1,PTX4 - - - - - - - - - Cre02.g111850 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g2302.t1 PF00536 - - - - - - - - Cre16.g692350 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g15631.t1 PF00069 PTHR23257 KOG4817 - - GO:0004672,GO:0005524,GO:0006468 AT1G23540.1 AtPERK12,IGI1 Protein kinase superfamily protein Cre13.g565750 EFG4 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - - GTP-binding elongation factor GTP binding elongation factor-like protein. Similarity to yeast Hbs1p which plays a role in nonsense-mediated decay g13924.t1, g13924.t2,Cre13.g565750.t1.1 PF00009,PF03143 PTHR23115,PTHR23115:SF38 KOG0458 - K14416 GO:0003924,GO:0005525 AT5G10630.2 - Translation elongation factor EF1A/initiation factor IF2gamma family protein Cre02.g091900 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 15 - - g1721.t1 - - KOG1003 - - - - - - Cre01.g039950 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g892.t1,Cre01.g039950.t1.1 PF06813 PTHR21576 KOG2504 - - - AT5G50520.1 - Major facilitator superfamily protein Cre01.g028450 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 2 - - g650.t1,Cre01.g028450.t1.1 PF04055 - - - - GO:0003824,GO:0051536 AT3G19630.1 - Radical SAM superfamily protein Cre13.g568700 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - - - g13995.t1 PF07713 PTHR13384,PTHR13384:SF2 KOG2974 - K13123 - AT5G23080.1 TGH SWAP (Suppressor-of-White-APricot)/surp domain-containing protein Cre13.g575101 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g14134.t1,Cre13.g575101.t1.1 - - - - - - - - - Cre03.g146027 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2966.t1,Cre01.g060550.t1.1 - - - - - - - - - Cre04.g215952 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g4652.t1 - - - - - - - - - Cre12.g542202 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 - - g13788.t1,Cre27.g774350.t1.1 PF03881 PTHR12149 KOG3021 - - - AT3G61080.1 - Protein kinase superfamily protein Cre12.g542200 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g13728.t1 - - - - - - - - - Cre15.g640101 - 0 10 1.0 1.0 0 10 1.0 1.0 M n upregulated 1 - - g15400.t1,Cre15.g640050.t1.2 - PTHR23125 KOG3262 - - - AT2G25490.1 EBF1,FBL6 EIN3-binding F box protein 1 Cre15.g640100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g15399.t1,Cre15.g640100.t1.1 - - - - - - - - - Cre17.g745997 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g18036.t1,Cre20.g759000.t1.1,Cre20.g759000.t1.2 - - - - - - - - - Cre04.g229250 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g5018.t1 - - - - - - - - - Cre08.g373840 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g8810.t1 - - - - - - - - - Cre07.g335800 TWI1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 Twister-like protein Similar to cystic kidney disease gene twister, homolog of zebrafish TWISTER. Contains PIH (protein interacting with HSP90) domain. Probably involved in preassembly of axonemal dyneins [see Yamamoto et al. (2010) PMID: 20603327] g7817.t1,TWI1 PF08190 PTHR21083 - - - - - - - Cre09.g390250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g9490.t1 - - - - - - - - - Cre03.g192201 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g3978.t1,Cre03.g192200.t1.3 PF12499 - - - - - - - - Cre01.g050700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g1123.t2, g1123.t1 - - - - - - - - - Cre17.g736250 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g17808.t1,Cre17.g736250.t1.1 PF00069 PTHR23257:SF310,PTHR23257 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre11.g467646 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g11577.t1,Cre18.g746400.t1.1 - - - - - - AT5G01710.1 - methyltransferases Cre02.g083750 ROC75 - 0 8 1.0 1.0 0 8 1.0 1.0 O n upregulated 3 - - g1542.t1,ROC75, g1542.t2,ROC75 PF00249 - - - - - AT3G46640.1 LUX,PCL1 Homeodomain-like superfamily protein Cre12.g503750 FMO14 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 11 - - g12494.t1,FMO14 - PTHR13789 - - - - - - - Cre09.g400256 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g9958.t1 - - - - - - - - - Cre09.g400250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g9264.t1 - - - - - - - - - Cre10.g434300 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10712.t1 PF00400 PTHR22850:SF17,PTHR22850 KOG0280 - - - AT5G63010.1 - Transducin/WD40 repeat-like superfamily protein Cre02.g089500 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g1670.t1,Cre02.g089500.t1.1 - - - - - - - - - Cre09.g408400 TPT12 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g10121.t1,TPT12 PF01753 PTHR13244 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre08.g364000 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - - - - g8524.t1 PF00400 PTHR22847:SF119,PTHR22847 KOG0319 - K02084 - AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre01.g016200 MLO4 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g385.t1,MLO4 PF03094 - - - K08472 GO:0008219,GO:0016021 AT1G61560.2 ATMLO6,MLO6 Seven transmembrane MLO family protein Cre13.g563100 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 11 - - g13856.t1,Cre13.g563100.t1.1 - - - - - - - - - Cre17.g704950 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 11 - - g17087.t1 - PTHR13140,PTHR13140:SF121 KOG0978 - - - AT1G64320.1 - myosin heavy chain-related Cre12.g556653 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g13822.t1,Cre27.g775800.t1.1 - - - - - - - - - Cre03.g152900 MPA5 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 - - g3113.t1,MPA5 PF00149 - - - - GO:0016787 - - - Cre09.g391700 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 13 - - g9458.t1,Cre09.g391700.t1.1 - - - - - - - - - Cre07.g329767 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 18 - - g7672.t1 - - - - - - - - - Cre06.g279650 OPR24 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g6502.t1 - - - - - - - - - Cre09.g405750 CAH8 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 Carbonic anhydrase Beta-type carbonic anhydrase. Characterized by Ynalvez et al. 2008 [PMID: 18405332], who found it to be constituitively expressed. The inorganic carbon-concentrating mechanism has been reviewed by Spalding (2008) [PMID: 17597098]. g10060.t1,CAH8 PF00484 PTHR11002,PTHR11002:SF1 KOG1578 4.2.1.1 K01673 GO:0004089,GO:0008270,GO:0015976 AT3G01500.3 ATBCA1,ATSABP3,CA1,SABP3 carbonic anhydrase 1 Cre07.g338800 CGL125 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g7881.t2, g7881.t1 PF04676 PTHR12072 - - - - AT5G56900.1 - CwfJ-like family protein / zinc finger (CCCH-type) family protein Cre09.g397700 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g9328.t1 - PTHR23023 - - - - - - - Cre02.g100633 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 15 - - g2050.t1 - - - - - - - - - Cre01.g048300 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g1073.t1 - - - - - - - - - Cre12.g513500 XAB2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Transcription-coupled DNA repair protein, possible splicing factor Involved in transcription-coupled DNA repair. Contains TPR and HAT repeats (PMID: 10944529). Probably a pre-mRNA splicing factor g12677.t1,Cre12.g513500.t1.1,XAB2 - PTHR11246,PTHR11246:SF5 KOG2047 - K12867 - AT5G28740.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre17.g733026 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g17714.t1 PF11397 - - - - - - - - Cre03.g156100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3186.t1,Cre03.g156100.t1.1 PF03343 PTHR14152:SF5,PTHR14152 - - K11984 - AT5G16780.1 DOT2,MDF SART-1 family Cre17.g740470 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g17911.t1 PF00083 PTHR24063,PTHR24063:SF154 - - K08150 GO:0016021,GO:0022857,GO:0055085 AT2G35740.1 ATINT3,INT3 nositol transporter 3 Cre03.g207918 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g4150.t1,Cre03.g207918.t1.1 - - - - - - - - - Cre17.g720500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 12 - - g17438.t1 PF02493,PF00307 PTHR23084,PTHR23084:SF27 - - - GO:0005515 AT1G21920.1 - Histone H3 K4-specific methyltransferase SET7/9 family protein Cre12.g507872 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g12400.t1 - - - - - - - - - Cre12.g532300 APG10 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - Autophagy-related protein E2-like enzyme mediating Apg12p conjugation; facilitates MAP-LC3 modification (PMID:12890687); end of first intron conserved in Volvox, possible regulatory or non-coding function g13096.t1,APG10 - PTHR10108,PTHR10108:SF383 - - - - - - - Cre09.g412600 CYG52 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 17 Adenylate/guanylate cyclase Guanylate cyclase domain similar to that of NPR2 protein [Homo sapiens] g10214.t1 PF00072,PF00211 PTHR11920 - - - GO:0000156,GO:0000160,GO:0006355,GO:0009190,GO:0016849,GO:0035556 AT3G16857.1 ARR1,RR1 response regulator 1 Cre09.g415650 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g10290.t1, g10290.t2,Cre09.g415650.t1.1 - - - - - - - - - Cre10.g447550 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 16 - - g11007.t1 PF03200 - - - - GO:0004573,GO:0009311 - - - Cre13.g572350 HSP22G - 0 1 1.0 nan 0 1 1.0 nan C n - - Heat shock protein 22G Small heat shock protein containing an alpha-crystallin domain; N-terminus by ChloroP predicted to be chloroplast transit peptide; PMID: 16143837 g14075.t1,Cre13.g572350.t1.1 PF00011 PTHR11527:SF69,PTHR11527 KOG0710 - - - - - - Cre16.g678549 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g16759.t1 - - - - - - - - - Cre16.g663800 CGL51,TPT25 - 0 1 1.0 nan 0 1 1.0 nan C Y - 11 Triose phosphate transporter Triose phosphate transporter. Conserved expressed protein g16027.t1,Cre16.g663800.t1.1,TPT25 PF03151,PF00892 PTHR11132 KOG1441 - - GO:0016020 AT5G17630.1 - Nucleotide/sugar transporter family protein Cre18.g749097 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g18098.t1 - - - - - - - - - Cre13.g578051 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g14206.t1,Cre13.g578051.t1.1 - PTHR24359:SF89,PTHR24359 - - - - - - - Cre13.g578050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g14207.t1 - - - - - - - - - Cre06.g297550 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g6883.t1,Cre06.g297550.t1.1 PF10406,PF07524 PTHR23307 - - K14649 - AT4G34340.1 TAF8 TBP-associated factor 8 Cre13.g580300 CGLD4,ABC3 - 0 1 1.0 nan 0 1 1.0 nan O Y upregulated 5 ABC transporter family protein ABC transporter family protein. Green-lineage-and-diatoms conserved expressed protein. Previously annotated as CGLD4 g14256.t1,Cre13.g580300.t1.1,ABC3 PF00005 PTHR12847 KOG2355 - K12608 GO:0005524,GO:0016887 AT1G03905.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre01.g000800 CGL136 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 6 - - g19.t1,Cre01.g000800.t1.1, g19.t2 - - - - - - AT1G78995.1 - - Cre03.g206750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g4176.t1,Cre03.g206750.t1.1 - - - - - - - - - Cre12.g557503 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13824.t1,Cre27.g775900.t2.1, g13824.t2,Cre27.g775900.t1.1 - - - - - - - - - Cre02.g098300 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g1999.t1,Cre02.g098300.t1.1 PF03801 PTHR10643 KOG0995 - K11547 - AT3G54630.1 - - Cre07.g330650 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 12 - - g7694.t1,Cre07.g330650.t1.1 - - - - - - - - - Cre03.g155450 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g3169.t1 PF01167 PTHR25838,PTHR25838:SF7 - - - - AT3G06380.1 ATTLP9,TLP9 tubby-like protein 9 Cre03.g143847 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g2856.t2,Cre01.g055950.t1.1,Cre01.g055950.t1.2, g2856.t1,Cre01.g055950.t2.1 PF07386 - - - - - - - - Cre10.g465050 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g11395.t1 PF03184 PTHR19303,PTHR19303:SF59 - - - GO:0003676 - - - Cre10.g454734 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 5 - - g11162.t1, g11162.t2 PF00504,PF12263 PTHR21649 - - - GO:0009765,GO:0016020 AT1G61520.1 LHCA3 photosystem I light harvesting complex gene 3 Cre10.g453100 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g11126.t2, g11126.t1,Cre10.g453100.t1.1 PF04791 PTHR21355 KOG2296 - - - AT5G65290.1 - LMBR1-like membrane protein Cre10.g461750 DMC5 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 10 - - g11319.t1,DMC5 PF12047,PF00145 PTHR10629 - 2.1.1.37 K00558 GO:0003677,GO:0006306 AT5G49160.1 DDM2,DMT01,DMT1,MET1,MET2,METI methyltransferase 1 Cre17.g712950 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 10 - - g17263.t1 - - - - - - - - - Cre07.g329000 CPLD47 - 0 1 1.0 nan 0 1 1.0 nan M Y - 4 Predicted membrane protein Conserved expressed membrane protein g7650.t1,Cre07.g329000.t1.1 PF11947 - - - - - AT4G19100.1 - Protein of unknown function (DUF3464) Cre16.g677300 GOX16 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - - Glyoxal or galactose oxidase The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate g16569.t1,GOX16 PF09118,PF07250 - - - - - AT1G67290.1 - glyoxal oxidase-related protein Cre02.g134124 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g2501.t1 - - - - - - - - - Cre17.g724500 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g17522.t1 - - - - - - - - - Cre03.g170250 PPP12 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g3505.t1,PPP12 PF00481 PTHR13832,PTHR13832:SF165 KOG0698 - - GO:0003824 AT4G03415.1 - Protein phosphatase 2C family protein Cre14.g612400 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g14758.t3, g14758.t2, g14758.t1 - - - - - - - - - Cre09.g395700 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 12 - - g9375.t1 PF01758 PTHR18640:SF1,PTHR18640 - - - GO:0006814,GO:0008508,GO:0016020 AT3G56160.1 - Sodium Bile acid symporter family Cre13.g573550 ANK26 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g14101.t1,ANK26 PF00023 PTHR24198:SF302,PTHR24198 - - - GO:0005515 AT2G03430.1 - Ankyrin repeat family protein Cre02.g095079 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g1853.t1,Cre11.g471650.t1.1 PF07707 - - - - - - - - Cre11.g482650 EZY3 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 1 - - g11982.t1,EZY3 - - - - - - - - - Cre04.g220600 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g4813.t1 - - - - - - - - - Cre06.g299300 TUG1 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Gamma tubulin Gamma tubulin [gi:1098639][gi:8928436] [PMID: 10223635} g6923.t1,Cre06.g299300.t1.1,TUG1 PF03953,PF00091 PTHR11588,PTHR11588:SF7 KOG1374 - K10389 GO:0003924,GO:0005525,GO:0006184,GO:0043234,GO:0051258,GO:0005874,GO:0007017 AT3G61650.1 TUBG1 gamma-tubulin Cre17.g715450 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g17320.t1,Cre17.g715450.t1.1 - PTHR10552 - - - - - - - Cre02.g095073 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g1847.t1,Cre11.g471350.t1.1 - - - - - - - - - Cre02.g095072 FAP144 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g1846.t1,Cre11.g471300.t1.1 - - - - - - - - - Cre02.g095074 VPS11 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 Subunit of VPS-C complex Hypothetical Conserved Protein. Similar to VPS11 (vacuolar protein sorting-associated protein 11)-type proteins. Matsuo et al.\'s (2008) roc12 (rhythm of chloroplast) circadian rhythm mutant locus maps here; this mutant exhibits a low-amplitude rhythm phe g1848.t1,Cre11.g471400.t1.1,Cre11.g471400.t1.2,VPS11 PF12451 PTHR23323:SF37,PTHR23323 KOG2114 - - - AT2G05170.1 ATVPS11,VPS11 vacuolar protein sorting 11 Cre07.g355300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g8262.t1,Cre07.g355300.t1.1 PF01062 - - - - - AT3G61320.1 - Bestrophin-like protein Cre11.g467850 PGA6 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g11737.t2,PGA6, g11737.t1,PGA6 PF01553 PTHR12497 - 2.3.1.- K13511 GO:0008152,GO:0008415 AT3G05510.1 - Phospholipid/glycerol acyltransferase family protein Cre01.g030300 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 14 - - g687.t1, g687.t2 PF00892 - - - - GO:0016020 AT5G12170.2 CLT3 CRT (chloroquine-resistance transporter)-like transporter 3 Cre03.g175851 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g3633.t1,Cre03.g175851.t1.1 - - - - - - - - - Cre03.g175850 EEP1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 - - g3632.t1,EEP1 PF03372 PTHR22748 KOG1294 4.2.99.18 K10771 GO:0004518,GO:0006281 AT2G41460.1 ARP apurinic endonuclease-redox protein Cre01.g004000 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g100.t1,Cre01.g004000.t1.1 PF08855 - - - - - - - - Cre03.g159100 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g3258.t1,Cre03.g159100.t1.1 - - - - - - - - - Cre02.g112333 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g2313.t1 PF00069 PTHR24349:SF120,PTHR24349 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT4G32830.1 AtAUR1,AUR1 ataurora1 Cre07.g312500 - 0 1 1.0 nan 0 1 1.0 nan SP Y - 9 - - g7229.t1,Cre07.g312500.t1.1 - - - - - - - - - Cre09.g392282 DHC2 - 0 20 1.0 1.0 0 20 1.0 1.0 C n - 16 Dynein heavy chain 2, inner arm dynein d (monomeric) Flagellar inner arm dynein heavy chain, dynein d (monomeric). Identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714] g9720.t1,Cre02.g127950.t1.1,Cre02.g127950.t1.2,DHC2 PF08393,PF07728,PF03028 PTHR10676,PTHR10676:SF137 KOG3595 - K10408 GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 - - - Cre01.g043950 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 15 - - g983.t1, g983.t2 PF00069 PTHR26392,PTHR26392:SF98 - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre03.g149350 RWP4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 RWP-RK transcription factor Putative RWP-RK domain transcription factor [PMID: 15785851]. Tandem pair with RWP11 with which there is amino acid homology around the RWP-RK domain and some intron conservation. Part of the model is tentative. g3037.t1,RWP4 PF02042 - - - - - AT5G66990.1 - RWP-RK domain-containing protein Cre12.g556000 ECP88 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - 88 kDa extracellular polypeptide Extracellular polypeptide Ecp88; induced by sulfur starvation; PMID: 11598240 g13412.t1,Cre12.g556000.t1.1,ECP88 PF06742,PF06863 - - - - - - - - Cre10.g460400 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g11288.t1, g11288.t2 PF00642 PTHR12506,PTHR12506:SF11 KOG1677 - - GO:0003676,GO:0008270 AT3G06410.1 - Zinc finger C-x8-C-x5-C-x3-H type family protein Cre03.g144847 PYK4 - 0 10 1.0 1.0 0 10 1.0 1.0 O n downregulated 9 Pyruvate kinase Pyruvate kinase (PK) [EC 2.7.1.40]; catalyses the final step in glycolysis, which is the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP. (This gene model is one of three possible variants from this genome regi g2906.t1,Cre01.g057900.t1.1,Cre01.g057900.t1.2,PYK4 PF00224,PF02887 PTHR11817 KOG2323 - - GO:0000287,GO:0004743,GO:0006096,GO:0030955 AT5G63680.1 - Pyruvate kinase family protein Cre14.g630750 MAPKKK10 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 17 Mitogen-Activated Protein Kinase Kinase Kinase MAP3K10 g15189.t1,MAPKKK10 PF07714 PTHR23257:SF287,PTHR23257 - - - GO:0004672,GO:0006468 AT5G53890.1 AtPSKR2,PSKR2 phytosylfokine-alpha receptor 2 Cre10.g430300 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 4 - - g10626.t1,Cre10.g430300.t1.1 - - - - - - - - - Cre01.g040300 DNJ9 - 0 5 1.0 1.0 0 5 1.0 1.0 M Y - 4 - - g899.t1,Cre01.g040300.t1.1 PF01596,PF11998 PTHR10509,PTHR10509:SF0 - - - GO:0008171 AT3G62000.2 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre03.g167150 FMO1 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 5 Flavin-containing monooxygenase Uses NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification; one of the many Arabidopsis homologues is essential for Systemic Acquired Resis g3431.t1,Cre03.g167150.t1.1,FMO1 PF00743 PTHR23023,PTHR23023:SF6 KOG1399 1.14.13.8 K00485 GO:0004499,GO:0050660,GO:0050661,GO:0055114 AT1G62620.1 - Flavin-binding monooxygenase family protein Cre09.g400400 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g9261.t1 PF01956 PTHR13116 KOG3188 - - GO:0016020 AT4G12590.1 - Protein of unknown function DUF106, transmembrane Cre09.g400404 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated - - - g9962.t1,Cre02.g137700.t1.1,Cre02.g137700.t1.2 - - - - - - - - - Cre06.g254800 SPL15 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g5730.t1,Cre06.g254800.t1.1,SPL15 PF00076 PTHR24011,PTHR24011:SF188 KOG0131 - K12831 GO:0003676 AT2G18510.1 emb2444 RNA-binding (RRM/RBD/RNP motifs) family protein Cre09.g408676 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g10129.t1 - - - - - - - - - Cre02.g116050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g2402.t1 - - - - - - - - - Cre12.g537300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g13212.t1,Cre12.g537300.t1.1 - - - - - - - - - Cre02.g083259 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g1530.t1,Cre02.g083259.t1.1 - - - - - - - - - Cre01.g002234 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g54.t1,Cre01.g002236.t2.1, g54.t2,Cre01.g002236.t1.2 - - - - - - - - - Cre16.g684505 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g16155.t1,Cre01.g064600.t1.1 - - - - - - - - - Cre16.g684500 TNP43 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g16408.t1,Cre16.g684500.t1.1,TNP43 PF07282 PTHR23257,PTHR23257:SF99 - - - - - - - Cre02.g101150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 - - g2064.t2, g2064.t1,Cre02.g101150.t1.1 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 - - - Cre03.g181900 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 12 - - g3770.t1,Cre03.g181900.t1.1 - - - - - - - - - Cre05.g247250 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 13 - - g5187.t1 - - KOG3671 - - - - - - Cre06.g286700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g6661.t1,Cre06.g286700.t1.1 PF00651 - - - - GO:0005515 - - - Cre08.g372250 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 3 - - g8719.t1,Cre08.g372250.t1.1 PF00005 PTHR19211:SF11,PTHR19211 KOG0927 - - GO:0005524,GO:0016887 AT5G64840.1 ATGCN5,GCN5 general control non-repressible 5 Cre03.g148900 FMO5 - 0 16 1.0 1.0 0 16 1.0 1.0 O n - 17 Flavin-containing monooxygenase Uses NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification g3028.t1,FMO5 PF00743 PTHR23023:SF23,PTHR23023 KOG1399 - - GO:0004499,GO:0050660,GO:0050661,GO:0055114 AT1G19250.1 FMO1 flavin-dependent monooxygenase 1 Cre17.g740800 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n upregulated - - - g17918.t1 PF06863 - - - - - - - - Cre10.g462700 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11341.t1 - PTHR13047 KOG1689 - K14397 - AT4G25550.1 - Cleavage/polyadenylation specificity factor, 25kDa subunit Cre10.g442350 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10883.t1 - - - - - - - - - Cre06.g307350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g7118.t1 PF01417,PF01412 PTHR23180 - - - GO:0008060,GO:0008270,GO:0032312 AT5G54310.1 AGD5,NEV ARF-GAP domain 5 Cre03.g185950 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g3853.t1 - PTHR13555,PTHR13555:SF2 - - - - - - - Cre08.g371500 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g8701.t1 - - - - - - - - - Cre03.g194450 CGL24 - 0 4 1.0 1.0 0 4 1.0 1.0 O Y - 6 Predicted protein Conserved protein of unknown function; strong similarity to protein of unknown function in Arabidopsis - NP_973925 - similar protein is also present in rice g4024.t1 - - - - - - AT1G28100.4 - - Cre07.g347550 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 10 - - g8087.t1,Cre07.g347550.t1.1 PF00004 - - - - GO:0005524 AT1G77620.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre16.g668050 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g16277.t1, g16277.t2 - - - - - - - - - Cre14.g621700 MMP31 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g14982.t1,MMP31 PF05548 - KOG4571 - - - - - - Cre01.g049300 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 14 - - g1094.t1 - - - - - - - - - Cre01.g044550 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g996.t1,Cre01.g044550.t1.1 - - - - - - - - - Cre16.g690095 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g16863.t1,Cre01.g072050.t1.1,Cre01.g072050.t1.2 PF07974 - KOG4726 - - - AT3G57630.1 - exostosin family protein Cre09.g392914 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g9737.t1, g9737.t2 - - - - - - - - - Cre17.g712100 PNO2,MDAR1 - 0 7 1.0 1.0 0 7 1.0 1.0 O Y - 6 Pyridine nucleotide-disulphide oxidoreductase Pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase; COG1251, NirB, NAD(P)H-nitrite reductase; monodehydroascorbate ferredoxin reductase related. Previously annotated as MDAR1 g17244.t1,Cre17.g712100.t1.1,PNO2 PF07992,PF00070 PTHR22912,PTHR22912:SF37 KOG1336 1.6.5.4 K08232 GO:0016491,GO:0050660,GO:0055114 AT3G52880.1 ATMDAR1,MDAR1 monodehydroascorbate reductase 1 Cre12.g497650 THY28 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Predicted protein Related to thymocyte nuclear protein, DUF589 g12632.t1,Cre12.g497650.t1.1,THY28 PF01878 PTHR14087,PTHR14087:SF12 KOG3383 - - - AT2G14660.1 - - Cre12.g497652 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 14 - - g12633.t1 PF01370 PTHR10366,PTHR10366:SF9 KOG1502 - - GO:0003824,GO:0044237,GO:0050662 AT1G09510.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre12.g497653 SNE13,NED1 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g12634.t1,Cre12.g497550.t1.3,NED1,SNE13 PF01370 PTHR10366,PTHR10366:SF9 KOG1502 - - GO:0003824,GO:0044237,GO:0050662 AT1G09510.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre06.g302276 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g6995.t1 - - - - - - - - - Cre10.g428950 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 10 - - g10596.t1,Cre10.g428950.t1.1 PF01965 PTHR11019,PTHR11019:SF30 - - - - - - - Cre03.g170001 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g3500.t1 - - - - - - - - - Cre07.g324866 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g7503.t1 PF07714 PTHR23257,PTHR23257:SF99 - - - GO:0004672,GO:0006468 AT4G36180.1 - Leucine-rich receptor-like protein kinase family protein Cre10.g417750 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 7 - - g10346.t1 PF01734 PTHR14226 - - - GO:0006629 - - - Cre07.g328150 PDI4 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 Protein disulfide isomerase Protein Disulfide Isomerase 4, P5 type. Possible ER localisation. PMID: 16143836 g7633.t2,PDI4, g7633.t1,PDI4 PF00085 PTHR18929,PTHR18929:SF32 KOG0191 5.3.4.1 K09584 GO:0045454 AT2G32920.1 ATPDI9,ATPDIL2-3,PDI9,PDIL2-3 PDI-like 2-3 Cre03.g179250 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - - - g3710.t1,Cre03.g179250.t1.1 - - - - - - - - - Cre02.g105100 - 0 14 1.0 1.0 0 14 1.0 1.0 C n downregulated 13 - - g2154.t1,Cre02.g105100.t1.1 - - - - - - - - - Cre16.g656050 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - - - - g15858.t1,Cre16.g656050.t1.1 - - - - - - - - - Cre04.g213400 SUB7 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g4709.t1,Cre04.g213400.t1.1,SUB7 PF00082 PTHR10795,PTHR10795:SF157 - - - GO:0004252,GO:0006508 AT5G19660.1 ATS1P,ATSBT6.1,S1P SITE-1 protease Cre11.g477400 CYG43 - 0 14 1.0 1.0 0 14 1.0 1.0 SP n - 3 Adenylate/guanylate cyclase Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g11854.t1 PF00512,PF00072,PF02518,PF00211 PTHR11920:SF131,PTHR11920 - - - GO:0000155,GO:0007165,GO:0016020,GO:0000156,GO:0000160,GO:0006355,GO:0005524,GO:0009190,GO:0016849,GO:0035556 AT1G67710.1 ARR11 response regulator 11 Cre02.g115350 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 14 - - g2384.t1,Cre02.g115350.t1.1 PF01842 PTHR13734:SF23,PTHR13734 - - - GO:0008152,GO:0016597 AT1G69040.2 ACR4 ACT domain repeat 4 Cre16.g673169 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g16709.t1,Cre01.g065378.t1.1,Cre01.g065378.t1.2 PF03942 PTHR21392 - - - - - - - Cre14.g625500 FAP254,ANK10 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 12 Flagellar Associated Protein with ankyrin repeats Protein of unknown function with ankyrin repeats, flagella associated; found in the flagellar proteome, where it was designated FAP254 [PMID: 15998802]. Phosphorylation characterized by Boesger et al. (2009) [PMID: 19429781] g15067.t1,ANK10, g15067.t2,ANK10 PF00023 PTHR24198:SF302,PTHR24198 KOG4412 - - GO:0005515 AT5G60070.1, AT5G66055.1 AKRP,EMB16,EMB2036 ankyrin repeat protein, ankyrin repeat family protein Cre14.g633050 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g15263.t1 - - - - - - - - - Cre02.g119201 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g2473.t1,Cre02.g119200.t1.2 - - - - - - - - - Cre06.g252401 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g5651.t1 PF01027 PTHR23291,PTHR23291:SF12 KOG2322 - - - AT4G15470.1 - Bax inhibitor-1 family protein Cre08.g362682 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g8493.t1,Cre08.g362682.t1.1 - - - - - - - - - Cre12.g533100 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 14 - - g13115.t1 PF07452 - - - - - - - - Cre14.g630500 TIE2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g15184.t1,Cre14.g630500.t1.1,TIE2 PF01974 PTHR13070 - - - GO:0000213,GO:0006388 - - - Cre16.g694950 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g15570.t1 PF00069 PTHR26263,PTHR26263:SF103 - - - GO:0004672,GO:0005524,GO:0006468 AT4G10730.1 - Protein kinase superfamily protein Cre16.g690900 RBL8 - 0 4 1.0 1.0 0 4 1.0 1.0 M Y upregulated - Rhomboid-like protein Similar to rhomboid intramembrane proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); lacks the catalytic Ser and hence probably inactive as a protease g15667.t1,Cre16.g690900.t1.1,RBL8 PF01694 PTHR22936 KOG2632 - - GO:0004252,GO:0006508,GO:0016021 AT1G25290.2 ATRBL10,RBL10 RHOMBOID-like protein 10 Cre16.g688500 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g16163.t1 - - KOG0963 - - - - - - Cre15.g635700 MAPKKK12 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 Mitogen-Activated Protein Kinase Kinase Kinase - g15334.t1,MAPKKK12 PF00069 PTHR23257,PTHR23257:SF316 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT2G42640.1 - Mitogen activated protein kinase kinase kinase-related Cre01.g015300 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 - - g369.t1 - - - - - - - - - Cre12.g527750 DLT2,ODA12 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 Flagellar outer dynein arm light chain 2, LC2 Flagellar outer dynein arm light chain 2 (LC2, DLC2. Tctex2). The oda12 mutant is discussed in relation to LC10 by Tanner et al. 2008 [PMID: 18579685]. Previously annotated as ODA12 g12999.t1,Cre12.g527750.t1.1,ODA12 PF03645 PTHR21255,PTHR21255:SF8 KOG4081 - - - - - - Cre02.g085400 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g1580.t1 - - - - - - - - - Cre01.g010150 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g255.t1,Cre01.g010150.t1.1 - PTHR11089:SF31,PTHR11089 - - - - AT2G41670.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre07.g325739 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n - - - - g7554.t1,Cre26.g773250.t1.1 PF00069 PTHR23257,PTHR23257:SF324 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre07.g325738 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g7553.t1,Cre26.g773200.t1.1,Cre26.g773200.t1.2 PF03110 - - - - GO:0003677,GO:0005634 AT2G42200.1 SPL9 squamosa promoter binding protein-like 9 Cre07.g325737 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 7 - - g7552.t1,Cre26.g773150.t1.1,Cre26.g773150.t1.2 - - - - - - - - - Cre07.g325736 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g7551.t1,Cre26.g773100.t1.1,Cre26.g773100.t1.2 PF04755 - - - - GO:0005198,GO:0009507 AT5G19940.1 - Plastid-lipid associated protein PAP / fibrillin family protein Cre07.g325731 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated - - - g7546.t1,Cre26.g772850.t1.1 PF01925 - - - - GO:0016021 - - - Cre07.g325730 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 5 - - g7545.t1,Cre26.g772800.t1.1,Cre26.g772800.t1.2 - - - - - - - - - Cre08.g362350 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g8486.t1 - - - - - - - - - Cre17.g704300 FAP47 - 0 9 1.0 1.0 0 9 1.0 1.0 O n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation g17074.t1 PF00307 - - - - GO:0005515 - - - Cre02.g108500 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 17 - - g2224.t1 - - - - - - - - - Cre08.g366450 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g8586.t1,Cre08.g366450.t1.1 - - - - - - - - - Cre05.g232900 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 13 - - g5116.t1 PF02181 PTHR23213,PTHR23213:SF18 KOG4462 - - - AT5G07740.1 - actin binding Cre02.g092000 DEG2 - 0 1 1.0 nan 0 1 1.0 nan M n - - DegP-type protease Serine protease, trypsin family, DegP type (HtrA) (protease Do) most similar to At2g47940 (DegP2), At1g65630 (DegP3) and BAB08526 (cf At5g40560, DegP13) [PMID: 11299370, PMID: 12185496]; one C-terminal PDZ domain, probably involved in substrate recognitio g1723.t1 PF00089 PTHR22939,PTHR22939:SF1 KOG1320 - - GO:0004252,GO:0006508 AT5G36950.1 DegP10 DegP protease 10 Cre07.g315250 CSG5 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Predicted protein of CSG family Function unknown, no known homologue, except in Volvox; belongs to a small family of Chlamydomonas specific proteins, all located on chomosome VII (scaffolds 6 and 16) g7293.t1,Cre07.g315250.t1.1,CSG5 - - - - - - - - - Cre13.g579976 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 15 - - g14249.t1 - - - - - - - - - Cre02.g111526 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2295.t1 - - - - - - - - - Cre17.g708350 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 2 - - g17162.t1,Cre17.g708350.t1.1 - - - - - - AT3G24160.1 PMP putative type 1 membrane protein Cre07.g316500 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g7317.t1 - - - - - - - - - Cre05.g248550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g5161.t1 PF01814,PF05495 PTHR21319 KOG1940 - - GO:0008270 AT3G18290.1 BTS,EMB2454 zinc finger protein-related Cre02.g145750 AOT2 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 7 Amino acid transporter Belongs to AAAP family of amino acid/auxin permeases; most similar to plant relatives; linked to closely related AOT1 g2547.t1,AOT2 PF01490 PTHR22950 KOG1305 - - - AT3G30390.1 - Transmembrane amino acid transporter family protein Cre16.g651801 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 2 - - g15765.t1 - - - - - - - - - Cre11.g468800 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g11770.t1,Cre11.g468800.t1.1 PF12499 - - - - - - - - Cre01.g016651 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g398.t1 - - - - - - - - - Cre06.g301800 MFT19 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 Permease, major facilitator superfamily - g6983.t1,MFT19, g6983.t2,MFT19 PF05977 PTHR24003,PTHR24003:SF386 - - - - - - - Cre06.g301802 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g6984.t1,Cre06.g301802.t1.1 - PTHR24003,PTHR24003:SF386 - - - - - - - Cre06.g301806 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g6985.t1,Cre06.g301806.t1.1 PF12499 - - - - - - - - Cre14.g629241 CYG25 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 5 - - g15155.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre12.g487200 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 - - g12245.t1 PF00400 PTHR19857,PTHR19857:SF14 KOG0296 - - - AT1G71840.1 - transducin family protein / WD-40 repeat family protein Cre16.g653650 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 - - g15806.t1 - - - - - - - - - Cre12.g529000 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g13026.t1,Cre12.g529000.t1.1 - - - - - - - - - Cre08.g361100 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g8456.t1,Cre08.g361100.t1.1, g8456.t2 PF00240 - - - - GO:0005515 - - - Cre07.g314650 RECA,EZY19 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 Chloroplast RecA recombination protein Chloroplast RecA recombination protein and early zygote expressed protein [PMID: 18487630]. Previously annotated as RECA g7279.t1,Cre07.g314650.t1.1,EZY19,RECA PF00154 PTHR22942:SF1,PTHR22942 KOG1433 - - GO:0003697,GO:0005524,GO:0006281 AT1G79050.1 - recA DNA recombination family protein Cre17.g707150 LIC2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 17 - - g17134.t1,LIC2 - - - - - - - - - Cre12.g517350 LSD1 - 0 5 1.0 1.0 0 5 1.0 1.0 O Y - 17 Zinc-finger protein Lsd1 Zinc-finger protein Lsd1. Lsd1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death [PMID: 9054508] g12758.t1,Cre12.g517350.t1.1 PF06943 - - - - - AT4G20380.2 LSD1 LSD1 zinc finger family protein Cre09.g405300 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g10051.t2, g10051.t1,Cre09.g405300.t1.1 - - - - - - - - - Cre01.g038550 SQD2 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 5 Sulfolipid synthase Sulfolipid synthase, adds sulfoquinovose to diacylglycerol to produce the plant sulfolipid sulfoquinovosyldiacylglycerol g863.t1 PF00534 PTHR12526,PTHR12526:SF168 KOG1111 2.4.1.- K06119 GO:0009058 AT5G01220.1 SQD2 sulfoquinovosyldiacylglycerol 2 Cre13.g567450 HON1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 Histone H1 Histone H1 [PMID: 10568039; PMID: 7480339]. ChromoDB HON3402 g13964.t1,Cre13.g567450.t1.1,HON1 PF00538 PTHR11467 - - K11275 GO:0000786,GO:0003677,GO:0005634,GO:0006334 AT2G18050.1 HIS1-3 histone H1-3 Cre17.g700100 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g16979.t1 PF01187 PTHR11954,PTHR11954:SF6 KOG1759 - - - AT5G01650.1 - Tautomerase/MIF superfamily protein Cre03.g145527 RBL1 - 0 1 1.0 nan 0 1 1.0 nan O n - - Rhomboid-like protein Conserved rhomboid family protein similar to rhomboid intramembrane proteases, involved in signaling, mitochondrial morphogenesis and apoptosis [PMID: 17114579]; possibly organelle-targeted; lacks the catalytic His (confirmed in Volvox orthologue) and hen g2941.t1,Cre01.g059400.t1.1,Cre01.g059400.t1.2,RBL1 PF01694 PTHR22936 - - - GO:0004252,GO:0006508,GO:0016021 AT3G53780.2 ATRBL4,RBL4 RHOMBOID-like protein 4 Cre02.g090526 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g1691.t1 - - - - - - - - - Cre01.g064727 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 - - g1269.t1 PF00069 PTHR23257:SF365,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre07.g322850 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 12 - - g7458.t1 - - - - - - - - - Cre03.g149650 CCD1 - 0 1 1.0 nan 0 1 1.0 nan SP Y - 6 Carotenoid cleavage dioxygenase Homologue in higher plants participates in abscisic acid biosynthesis; could play a similar role (PMID: 16327238), related to carotenoid 9,10-9\',10\' cleavage dioxygenase g3044.t1 PF03055 PTHR10543,PTHR10543:SF1 KOG1285 - K11159 - AT3G63520.1 ATCCD1,ATNCED1,CCD1,NCED1 carotenoid cleavage dioxygenase 1 Cre08.g384800 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 1 - - g9055.t1,Cre08.g384800.t1.1 PF00561 PTHR10992,PTHR10992:SF81 KOG2382 - - - AT4G10030.1 - alpha/beta-Hydrolases superfamily protein Cre02.g087633 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g1628.t1,Cre02.g087629.t1.2 - - - - - - - - - Cre03.g202700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g4266.t1 - - - - - - - - - Cre06.g281700 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 15 - - g6552.t1 - - - - - - - - - Cre06.g276050 AKR2 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 10 - - g6188.t1,Cre06.g276050.t1.1,AKR2 PF01549,PF00248 PTHR11732:SF74,PTHR11732 KOG1577 - - GO:0016491,GO:0055114 AT2G21250.1 - NAD(P)-linked oxidoreductase superfamily protein Cre01.g023150 MCM5 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 10 Minichromosome maintenance protein Homology to MCM5 DNA replication protein g534.t1,Cre01.g023150.t1.1,MCM5 PF00493 PTHR11630,PTHR11630:SF42 KOG0481 - K02209 GO:0003677,GO:0005524,GO:0006260 AT2G07690.1 MCM5 Minichromosome maintenance (MCM2/3/5) family protein Cre04.g227450 TPT9 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 14 - - g4976.t1,Cre04.g227450.t1.1,TPT9 PF03151 PTHR11132 KOG1441 - - - AT1G12500.1 - Nucleotide-sugar transporter family protein Cre07.g324450 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g7495.t1,Cre07.g324450.t1.1 - - - - - - AT4G36690.3 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor Cre12.g486551 PHX19 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g12262.t1,Cre12.g486500.t1.3,PHX19 - PTHR14049:SF6,PTHR14049 KOG3449 - - - AT1G68080.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre13.g592400 LCI21 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - Low-CO2-inducible protein Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145], appears in their table as Lci20 rather than L g14522.t1 - - - - - - AT1G13030.1 - sphere organelles protein-related Cre02.g141506 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g2717.t1,Cre67.g793650.t1.1 - PTHR12596 - - - - AT5G06120.4 - ARM repeat superfamily protein Cre17.g737050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 2 - - g17827.t1,Cre17.g737050.t1.1 PF00566 PTHR22957,PTHR22957:SF159 - - - GO:0005097,GO:0005622,GO:0032313 AT3G07890.1 - Ypt/Rab-GAP domain of gyp1p superfamily protein Cre04.g226850 ASP1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 Pepsin-type aspartyl protease Aspartic protease, pepsin (A1) family; directed to secretory pathway; previously identified by Almeida, C.M.(2003) Thesis, Department of Zoologia, University of Coimbra, Coimbra, Portugal (Accession number CAE18153) g4965.t1,Cre04.g226850.t1.1,ASP1 PF00026,PF03489,PF05184 PTHR13683,PTHR13683:SF85 - 3.4.23.40 K08245 GO:0004190,GO:0006508,GO:0006629 AT1G11910.1 APA1,ATAPA1 aspartic proteinase A1 Cre11.g478528 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 13 - - g11880.t1,Cre11.g478500.t1.2 - - - - - - - - - Cre10.g451150 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g11087.t1 - - - - - - - - - Cre08.g358523 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g8340.t1 - - - - - - - - - Cre06.g307012 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g7111.t1,Cre06.g307050.t1.3 - - - - - - - - - Cre02.g096800 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g1967.t1,Cre02.g096800.t1.1 PF02410 - - - - - - - - Cre17.g706350 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g17118.t1 - - - - - - - - - Cre02.g118950 PRPS17 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Plastid ribosomal protein S17 Chloroplast ribosomal protein S17, imported to chloroplast; Chloroplast small ribosomal subunit protein S17 g2468.t1,Cre02.g118950.t1.1 PF00366 PTHR10744 KOG1740 - K02961 GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT1G49400.1 emb1129 Nucleic acid-binding, OB-fold-like protein Cre02.g114600 PRX2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 2-cys peroxiredoxin 2-cys Peroxiredoxin, thioredoxin dependent peroxidase, probably cytosolic, more closely related to mammalian peroxiredoxins than to plant peroxiredoxins. Found in the flagellar proteome [PMID: 15998802]. g2368.t1,Cre02.g114600.t1.1 PF00578,PF10417 PTHR10681 KOG0852 1.11.1.15 K03386 GO:0016209,GO:0016491,GO:0051920 AT5G06290.1 2-Cys Prx B,2CPB 2-cysteine peroxiredoxin B Cre02.g088250 MCT2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g1643.t1,Cre02.g088250.t1.1,MCT2 PF00698 PTHR10982 KOG2926 - - - AT2G30200.1 - catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding Cre12.g498500 DEG1C,DEG11 - 0 4 1.0 1.0 0 4 1.0 1.0 M n upregulated 2 DegP-type protease (HtrA) similar to DegP protease; serine protease, trypsin family, DegP type (HtrA) (protease Do) most similar to At4g18370 (DegP5, localized in thylakoid membrane, lumen side [PMID: 15137941]; probably results from a recent duplication of DEG5 gene; one C g12615.t1,Cre12.g498500.t1.1,DEG1C PF00089 PTHR22939:SF21,PTHR22939 KOG1320 - - GO:0004252,GO:0006508 AT3G27925.1 Deg1,DEGP1 DegP protease 1 Cre01.g010300 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g259.t1,Cre01.g010300.t1.1 - - - - - - - - - Cre03.g174550 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g3604.t1,Cre03.g174550.t1.1 - - - - - - - - - Cre13.g587400 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g14411.t1 - - - - - - - - - Cre03.g167778 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 16 - - g3451.t1 - PTHR21178,PTHR21178:SF8 - - - - - - - Cre06.g283700 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 3 - - g6596.t1,Cre06.g283700.t1.1 - - - - - - - - - Cre16.g691202 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g15660.t1 - - - - - - - - - Cre16.g691200 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g15659.t1 - - - - - - - - - Cre01.g037300 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g836.t3, g836.t2, g836.t1,Cre01.g037300.t1.1 - - - - - - - - - Cre01.g032150 FAP187 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 13 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g728.t1 PF00400 PTHR22847:SF146,PTHR22847 KOG0643 - - - AT3G49660.1 - Transducin/WD40 repeat-like superfamily protein Cre17.g724150 DRP3 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Dynamin-related GTPase Expressed Protein. Similar to Arabidopsis DRP3 group (ADL2), a Dynamin-type GTPase involved in mitochondrial division. g17514.t1 PF01031,PF00350,PF02212 PTHR11566:SF12,PTHR11566 KOG0446 3.6.5.5 K01528 GO:0005525,GO:0003924 AT2G14120.1 DRP3B dynamin related protein Cre13.g582476 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 7 - - g14300.t1 PF00293,PF05005,PF09296 PTHR12258,PTHR12258:SF1 - 3.1.3.- K01112 GO:0016787 AT5G20070.1 ATNUDT19,ATNUDX19,NUDX19 nudix hydrolase homolog 19 Cre12.g547250 - 0 5 1.0 1.0 0 5 1.0 1.0 C n upregulated 2 - - g13608.t1,Cre12.g547250.t1.1 - - - - - - - - - Cre04.g216500 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g4502.t1 - - - - - - - - - Cre17.g730200 PEX7 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 Peroxisomal targeting signal 2 receptor Homolog of PEX7 peroxisomal targeting signal 2 receptor; PMID: 19214701 g17646.t1,Cre17.g730200.t1.1 PF00400 PTHR22850:SF4,PTHR22850 KOG0277 - K13341 - AT1G29260.1 ATPEX7,PEX7 peroxin 7 Cre14.g633425 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g15271.t1,Cre14.g633423.t1.2 - - - - - - - - - Cre07.g321350 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 - - g7428.t1,Cre07.g321350.t1.1 PF09423 - - - - - AT5G42370.1 - Calcineurin-like metallo-phosphoesterase superfamily protein Cre14.g621850 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g14985.t1 - PTHR12203 - - - - AT4G19160.2 - - Cre10.g432350 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g10669.t1, g10669.t2 - - - - - - - - - Cre01.g027700 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 4 - - g633.t1,Cre01.g027700.t1.1 - - - - - - - - - Cre08.g369667 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g8661.t1 PF00069 - - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre02.g119600 PSD1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g2483.t1,Cre02.g119600.t1.1,PSD1 PF02666 PTHR10067 - 4.1.1.65 K01613 GO:0004609,GO:0008654 AT4G25970.1 PSD3 phosphatidylserine decarboxylase 3 Cre12.g552850 CGL77 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 4 Predicted protein Green-lineage conserved protein with aminomethyltransferase functionality g13481.t1,CGL77 PF01571,PF08669 PTHR13847:SF37,PTHR13847 KOG2770 - - GO:0004047,GO:0005737,GO:0006546 AT1G60990.1 - Glycine cleavage T-protein family Cre12.g552851 OGT1 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 2 - - g13482.t1,OGT1 PF00515 PTHR23083,PTHR23083:SF245 KOG4626 - - GO:0005515 AT3G11540.1 SPY Tetratricopeptide repeat (TPR)-like superfamily protein Cre01.g018150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g428.t1,Cre01.g018150.t1.1 - - - - - - - - - Cre09.g411751 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 1 - - g10194.t1,Cre09.g411750.t1.3 - - - - - - - - - Cre16.g674534 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 14 - - g16126.t1,Cre01.g063300.t1.1 PF00515 PTHR22904:SF111,PTHR22904 - - - GO:0005515 AT3G17670.2 - tetratricopeptide repeat (TPR)-containing protein Cre12.g534915 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g13156.t1 - - - - - - - - - Cre03.g194900 CYA4 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 17 - - g4036.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre14.g619850 ELG36 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 Exostosin-like glycosyltransferase Exostosin-like membrane protein, a heparan sulfate glycosyltransferase g14936.t1,ELG36 PF01476 PTHR10848 - - - GO:0003677,GO:0003824,GO:0005524,GO:0005694,GO:0006259,GO:0016998 - - - Cre09.g396587 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 14 - - g9840.t2,Cre02.g133250.t2.1, g9840.t3,Cre02.g133250.t1.1, g9840.t1,Cre02.g133250.t3.1 - - - - - - - - - Cre14.g619854 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 9 - - g14937.t1,Cre14.g619854.t1.1 PF03016 PTHR11062,PTHR11062:SF13 KOG1021 - - GO:0016020 AT1G27440.1 ATGUT1,GUT2,IRX10 Exostosin family protein Cre08.g384390 POLQ2 - 0 17 1.0 1.0 0 17 1.0 1.0 C n - 11 - - g9047.t1,POLQ2 PF00271,PF00270 PTHR11752:SF3,PTHR11752 KOG1073 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT4G32700.2 TEB helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding Cre10.g446000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g10974.t1 - - - - - - AT3G01810.1 - - Cre01.g013450 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 14 - - g329.t1,Cre01.g013450.t1.1 - - - - - - - - - Cre01.g034650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g782.t1,Cre01.g034650.t1.1 - - - - - - AT1G06590.1 - - Cre03.g171000 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g3523.t1 - - - - - - - - - Cre01.g009700 PPP1 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 10 - - g245.t1,PPP1 PF07228 PTHR12320 KOG1379 - - GO:0003824 AT2G30170.1 - Protein phosphatase 2C family protein Cre13.g573200 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 17 - - g14094.t1,Cre13.g573200.t1.1 - - - - - - - - - Cre07.g327900 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 16 - - g7627.t1 - - - - - - - - - Cre06.g293250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g6792.t1 PF07986,PF01086 PTHR15440 - - - GO:0005198,GO:0006886,GO:0016192,GO:0030130,GO:0030132 AT4G39920.1 POR,TFC C C-CAP/cofactor C-like domain-containing protein Cre13.g579566 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g14238.t2, g14238.t1 PF03423 - - - - - - - - Cre03.g143807 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 14 - - g2854.t1,Cre01.g055850.t1.1,Cre01.g055850.t1.2 - - - - - - - - - Cre01.g038300 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g857.t1,Cre01.g038300.t1.1 - - - - - - - - - Cre02.g111950 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g2304.t1 PF00069 PTHR23257:SF350,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre03.g154250 MAPKKK6 - 0 1 1.0 nan 0 1 1.0 nan M n - - Mitogen-Activated Protein Kinase Kinase Kinase MAP3K6 g3143.t1,MAPKKK6 PF00069 PTHR23257:SF300,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre13.g606200 TMC5 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g14618.t2,TMC5, g14618.t1,TMC5 PF01472,PF01189 PTHR22807:SF7,PTHR22807 KOG1122 - - GO:0003723 AT1G06560.1 - NOL1/NOP2/sun family protein Cre02.g112600 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g2319.t1,Cre02.g112600.t1.1 PF00571 PTHR13780:SF12,PTHR13780 - - - GO:0005515 - - - Cre02.g102750 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g2098.t1 PF11051 - - - - GO:0006486 - - - Cre10.g433000 TSG2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 - - g10683.t1,TSG2 PF02091,PF02092 - - 6.1.1.14 K14164 GO:0000166,GO:0004820,GO:0005524,GO:0005737,GO:0006412,GO:0006426 AT3G48110.1 EDD,EDD1 glycine-tRNA ligases Cre02.g075850 STK12,SNRK2,STPK12 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK12 and SNRK2 (for SNF-1 related kinase) g1359.t2,SNRK2,STK12,STPK12, g1359.t1,SNRK2,STK12,STPK12 PF00069 PTHR24343,PTHR24343:SF124 KOG0662, KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT4G33950.1 ATOST1,OST1,P44,SNRK2-6,SNRK2.6,SRK2E Protein kinase superfamily protein Cre09.g395584 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g9813.t1,Cre02.g132100.t1.1 - - KOG0107 - - - - - - Cre12.g489850 STK10,STPK10 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK10 g12188.t1,Cre12.g489850.t1.1,STK10,STPK10 PF00069 PTHR23257,PTHR23257:SF99 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT3G17420.1 GPK1 glyoxysomal protein kinase 1 Cre06.g273250 GPA2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g6130.t1,Cre06.g273250.t1.1,GPA2 PF01553 PTHR23063:SF2,PTHR23063 KOG2898 2.3.1.15 K13506 GO:0008152,GO:0008415 AT5G60620.1 GPAT9 glycerol-3-phosphate acyltransferase 9 Cre04.g228400 WRK1 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 WRKY family transcription factor Http://chlamytfdb.bio.uni-potsdam.de/v2.0/gene_details.php?cds_id=115858 g4997.t2,WRK1, g4997.t1,WRK1 PF03106 - - - K13424 GO:0003700,GO:0006355,GO:0043565 AT5G07100.1 WRKY26 WRKY DNA-binding protein 26 Cre06.g289700 BET5 - 0 1 1.0 nan 0 1 1.0 nan O n - - Component of TRAPP complex Expressed Protein. Conserved protein similar to BET5, a component of the TRAPP complex involved in ER to Golgi vesicle transport. g6722.t1,Cre06.g289700.t1.1,BET5 PF04099 PTHR23249,PTHR23249:SF9 KOG3368 - - GO:0005801,GO:0006888 AT1G51160.1 - SNARE-like superfamily protein Cre01.g042450 - 0 7 1.0 1.0 0 7 1.0 1.0 O n downregulated - - - g951.t1 - - - - - - - - - Cre03.g202550 ELG11 - 0 12 1.0 1.0 0 12 1.0 1.0 M n downregulated 13 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g4269.t1,ELG11 PF03016 PTHR11062,PTHR11062:SF15 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre09.g391000 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 10 - - g9472.t1 PF05686 PTHR12203,PTHR12203:SF14 - - - - - - - Cre02.g142086 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g2752.t1,Cre15.g646350.t1.1,Cre15.g646350.t1.2 - PTHR13063:SF9,PTHR13063 KOG3039 - K13125 - AT1G61620.1 - phosphoinositide binding Cre01.g014100 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 2 - - g344.t1,Cre01.g014100.t1.1 PF10294 - - - - - - - - Cre14.g629500 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 2 - - g15161.t1,Cre14.g629500.t1.1 PF06244 PTHR21680 KOG3223 - - - AT1G16210.1 - - Cre14.g614900 TSQ1 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g14815.t1,TSQ1, g14815.t2,Cre14.g614900.t1.1,TSQ1 PF03950,PF04557,PF00749,PF04558 PTHR10119:SF15,PTHR10119 KOG1148 6.1.1.18 K01886 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418,GO:0016876,GO:0043039,GO:0004819,GO:0006425 AT1G25350.1 OVA9 glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative Cre06.g260000 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 - - g5844.t1 - - - - - - - - - Cre06.g298550 FMO7 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 11 Flavin-containing monooxygenase Uses NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification; more closely related to bacterial than to plant homologues; linked to FMO6 and g6906.t2,FMO7, g6906.t1,FMO7 PF00743 PTHR23023,PTHR23023:SF20 - - - GO:0004499,GO:0050660,GO:0050661,GO:0055114 AT1G19250.1 FMO1 flavin-dependent monooxygenase 1 Cre09.g409650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 13 - - g10150.t1,Cre09.g409650.t1.1 PF00097 - - - - - AT4G34100.1 - RING/U-box superfamily protein Cre06.g270550 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 13 - - g6070.t1,Cre06.g270550.t1.1 - - - - - - - - - Cre14.g628450 CYN48,CYN1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 Peptidyl-prolyl cis-trans isomerase, cyclophilin type Peptidyl-prolyl cis-transisomerase, cyclophilin type; homologous to bacterial cyclophilins and At4g1770; isoform a; peptidyl-prolyl cis-transisomerase, cyclophilin type; homologous to bacterial cyclophilins and At4g1770; isoform b g15137.t1,CYN1 PF00160 - - - - GO:0003755,GO:0006457 AT4G17070.1 - peptidyl-prolyl cis-trans isomerases Cre05.g230850 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 5 - - g5150.t1 PF01424 - - - - GO:0003676 - - - Cre10.g434800 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 9 - - g10723.t1 PF00515 PTHR23083,PTHR23083:SF65 - - - GO:0005515 AT1G12270.1 - stress-inducible protein, putative Cre08.g383550 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 1 - - g9029.t1,Cre08.g383550.t1.1 PF00023,PF04564 PTHR26393,PTHR26393:SF498 KOG4214 - - GO:0005515,GO:0000151,GO:0004842,GO:0016567 AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre03.g146607 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g2995.t1,Cre01.g062000.t1.1 - - - - - - - - - Cre02.g113550 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 5 - - g2339.t1,Cre02.g113550.t1.1 - - - - - - - - - Cre09.g401330 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Phosphoglycolate phosphatase Phosphoglycolate phosphatase, possible phosphoglucomutase g9988.t1,Cre02.g139000.t1.1,Cre02.g139000.t1.2 PF00702 PTHR18901 KOG2914 - - GO:0003824,GO:0008152 AT5G57440.1 GPP2,GS1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre01.g002700 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 11 - - g64.t1,Cre01.g002700.t1.1 PF00400 - KOG1333 - - - - - - Cre01.g045150 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g1008.t1,Cre01.g045150.t1.1 - - - - - - - - - Cre14.g632450 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 13 - - g15239.t1 PF07648 PTHR21131 - - - - - - - Cre14.g617450 HSP22E - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 2 Heat shock protein 22E Small heat shock protein containing an alpha-crystallin domain; N-terminus by TargetP weakly predicted to be chloroplast transit peptide; HSP22E and HSP22F are arranged head-to-head and share 98% identical nucleotide sequence in coding region (96% identic g14877.t1,Cre14.g617450.t1.1 PF00011 PTHR11527,PTHR11527:SF14 - - - - AT1G07400.1 - HSP20-like chaperones superfamily protein Cre07.g335100 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 8 - - g7802.t1,Cre07.g335100.t1.1 PF07883 - - - - - - - - Cre09.g390350 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g9488.t1 - - KOG0870 - - - - - - Cre07.g351000 WWP1 - 0 1 1.0 nan 0 1 1.0 nan M n - - WW domain protein - g8168.t1,WWP1 PF00397,PF01846 PTHR11864 KOG0152 - K12821 GO:0005515 AT1G44910.1 ATPRP40A,PRP40A pre-mRNA-processing protein 40A Cre03.g150400 LRG5 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - GPI transamidase subunit PIG-U GPI transamidase subunit PIG-U. PIG-U is thought to represent a fifth subunit in GPI transamidase complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI. Protein involved in blue light signaling in g3059.t1,Cre03.g150400.t1.1,LRG5 PF06728 PTHR13121 KOG2552 - - GO:0005789,GO:0006506,GO:0016021 AT1G12730.1 - GPI transamidase subunit PIG-U Cre03.g204241 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g4404.t1 - - - - - - - - - Cre17.g744147 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17999.t1,Cre20.g760500.t1.1 PF00271,PF02889,PF00270 PTHR11752,PTHR11752:SF7 KOG0951 3.6.4.13 K12854 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G20960.1 emb1507 U5 small nuclear ribonucleoprotein helicase, putative Cre05.g244050 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g5254.t1 - - - - - - - - - Cre07.g334851 HEP1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 4 - - g7797.t1,Cre07.g334850.t1.2,HEP1 PF05180 PTHR20922 KOG3277 - - - AT3G54826.1 - Zim17-type zinc finger protein Cre10.g444250 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g10924.t1 PF00650 PTHR23324,PTHR23324:SF5 KOG1471 - - - AT2G21520.2 - Sec14p-like phosphatidylinositol transfer family protein Cre01.g051350 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 13 - - g1137.t1 - - - - - - - - - Cre03.g203730 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g4242.t1,Cre03.g203730.t1.1 - PTHR22939,PTHR22939:SF1 KOG1320 - - - AT5G40200.1 DegP9 DegP protease 9 Cre19.g750797 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n downregulated 16 - - g18134.t1,Cre33.g782575.t1.1 PF00069 PTHR23257:SF122,PTHR23257 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT4G34440.1 - Protein kinase superfamily protein Cre06.g259950 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 11 - - g5843.t2, g5843.t1 - - - - - - - - - Cre03.g180250 IPS1,INO1 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 - - g3736.t1,Cre03.g180250.t1.1,IPS1 PF01658,PF07994 PTHR11510 KOG0693 5.5.1.4 K01858 GO:0004512,GO:0006021,GO:0008654 AT2G22240.1 ATIPS2,ATMIPS2,MIPS2 myo-inositol-1-phosphate synthase 2 Cre18.g748797 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g18092.t1,Cre46.g788900.t1.1,Cre46.g788900.t1.2, g18092.t2,Cre46.g788900.t2.1 PF05050 - - - - - - - - Cre11.g480100 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated - - - g11918.t1 - - - - - - - - - Cre14.g626500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g15088.t1,Cre14.g626500.t1.1 PF00400 PTHR22847:SF101,PTHR22847 - - - - AT2G43770.1 - Transducin/WD40 repeat-like superfamily protein Cre06.g249500 DMT1,DMC7,MET1 - 0 1 1.0 nan 0 1 1.0 nan M n - - Cytosine-C5 specific DNA methyltransferase Dnmt1 class (cytosine-5-)DNA methyltransferase, ChromDB DMT3403; allelic to the previously published sequence AB108536 at the DMT1 locus [also published as MET1; PMID: 11983892, PMID: 15514055], which was sequenced from strain CC-683, a strain carrying th g5588.t1,DMT1,MET1 PF00145 PTHR10629 - - - GO:0003677,GO:0006306 AT4G14140.1 DMT02,DMT2,MET02,MET2 DNA methyltransferase 2 Cre10.g442800 XUV6,UAPA1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Xanthine/uracil/vitamin C permease-like Xanthine/uracil/vitamin C permease-like. Previously annotated as UAPA1 g10892.t1,UAPA1 PF00860 PTHR11119,PTHR11119:SF3 KOG1292 - - GO:0005215,GO:0006810,GO:0016020,GO:0055085 AT5G62890.1 - Xanthine/uracil permease family protein Cre07.g346950 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 6 - - g8075.t1 - - - - - - - - - Cre12.g530800 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 5 - - g13064.t1 PF11911 - - - - - - - - Cre16.g675200 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g16614.t1 - - - - - - - - - Cre07.g350976 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 14 - - g8167.t1 - - - - - - - - - Cre07.g350750 PTO1,PTOX1 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y upregulated 8 Alternative oxidase Alternative oxidase, possibly chloroplast-localized; quinol-to-oxygen oxidoreductase; shares similarities with plastid terminal oxidase IMMUTANS [PMID: 12227339, PMID: 14503001]. Previously annotated as PTOX1 g8160.t1,Cre07.g350750.t1.1,PTO1 PF01786 - - - - GO:0005740,GO:0007585,GO:0055114 AT4G22260.1 IM,IM1 Alternative oxidase family protein Cre09.g396350 MITC3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 12 Mitochondrial substrate carrier protein Mitochondrial substrate carrier protein. Previously annotated as MITC3 g9362.t1,Cre09.g396350.t1.1,MITC3 PF00153 PTHR24089:SF45,PTHR24089 KOG0768 - - - AT1G34065.1 SAMC2 S-adenosylmethionine carrier 2 Cre07.g353400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 4 - - g8220.t2, g8220.t1 - - - - - - - - - Cre07.g326626 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g7596.t1 - - - - - - - - - Cre02.g097600 FKM2 - 0 12 1.0 1.0 0 12 1.0 1.0 SP n - 8 - - g1986.t1,FKM2 - - - - - - - - - Cre10.g437829 CGL89 - 0 1 1.0 nan 0 1 1.0 nan O Y - 12 - - g10786.t1,Cre10.g437829.t1.1 PF09273 PTHR13271 - - - - AT5G17240.1 SDG40 SET domain group 40 Cre08.g358700 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g8403.t1,Cre08.g358700.t1.1 - - - - - - - - - Cre09.g392850 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g9432.t1 - - - - - - - - - Cre14.g619100 CLPR1 - 0 1 1.0 nan 0 1 1.0 nan C n - - Inactive subunit of chloroplast ClpP complex - g14919.t1,Cre14.g619100.t1.1 PF00574 PTHR10381,PTHR10381:SF3 - - - GO:0004252,GO:0006508 AT1G49970.1 CLPR1,NCLPP5,SVR2 CLP protease proteolytic subunit 1 Cre10.g446275 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 10 - - g10980.t1,Cre10.g446282.t1.2 - - - - - - - - - Cre09.g397512 - 0 7 1.0 1.0 0 7 1.0 1.0 O n upregulated 2 - - g9866.t1 - PTHR19316 - - - - AT3G09350.1 Fes1A Fes1A Cre07.g347900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g8095.t1 PF00400 PTHR22847 - - - - AT3G49660.1 - Transducin/WD40 repeat-like superfamily protein Cre08.g384250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 4 - - g9043.t1,Cre08.g384250.t1.1 PF00069 PTHR24343,PTHR24343:SF59 KOG0662 - - GO:0004672,GO:0005524,GO:0006468 AT5G66880.1 SNRK2-3,SNRK2.3,SRK2I sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 Cre16.g656700 KIN14-5,KIN14A-2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 11 - - g15872.t1,Cre16.g656700.t1.1,KIN14-5,KIN14A-2 PF00225 PTHR24115,PTHR24115:SF170 KOG0239 - K10405 GO:0003777,GO:0005524,GO:0007018 AT4G05190.1 ATK5 kinesin 5 Cre09.g387393 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g9585.t1,Cre02.g121850.t1.1,Cre02.g121850.t1.2 PF00850 PTHR10625,PTHR10625:SF28 KOG1342 3.5.1.98 K06067 - AT4G38130.1 ATHD1,ATHDA19,HD1,HDA1,HDA19,RPD3A histone deacetylase 1 Cre10.g449600 SPR1 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g11053.t1,SPR1 - PTHR24318 - - - - - - - Cre12.g522850 HEL55 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g12876.t1,Cre12.g522850.t1.1,HEL55 PF00271,PF00270 PTHR24031,PTHR24031:SF48 KOG0339 3.6.4.13 K12835 GO:0003676,GO:0005524,GO:0008026,GO:0004386 AT2G47330.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre17.g729800 ALB3.2 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g17637.t1,Cre17.g729800.t1.1 PF02096 PTHR12428,PTHR12428:SF12 - - K03217 GO:0016021,GO:0051205 AT2G28800.1 ALB3 63 kDa inner membrane family protein Cre16.g670300 PRP39 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Nuclear pre-mRNA splicing factor and U1 snRNP Component U1 snRNP protein involved in splicing, contains multiple tetratricopeptide repeats; homologue of S. cerevisiae Prp39 g16223.t1,PRP39, g16223.t2,Cre16.g670300.t1.1,PRP39 - PTHR17204:SF8,PTHR17204 KOG1258 - K13217 - AT1G04080.1 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein Cre17.g734773 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g17778.t2, g17778.t1 - - - - - - - - - Cre40.g760147 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g18380.t1 PF00036 PTHR10891 - - - - AT3G50360.1 ATCEN2,CEN1,CEN2 centrin2 Cre17.g714200 KUP2,KUP6 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 18 Potassium ion uptake transporter Linked to closely related KUP1 and KUP3. Also annotated a KUP6. C-terminal part of this gene model has homology to Myb-like transcription factors, which suggests that this gene model might be too long and should be split into two g17293.t1,KUP2,KUP6 PF02705 - - - - GO:0015079,GO:0016020,GO:0071805 AT4G13420.1 ATHAK5,HAK5 high affinity K+ transporter 5 Cre09.g387023 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g9575.t1,Cre02.g121350.t1.1 PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre02.g096551 - 0 12 1.0 1.0 0 12 1.0 1.0 C n - 9 - - g1961.t1 - - KOG3032 - - - - - - Cre06.g256700 - 0 11 1.0 1.0 0 11 1.0 1.0 C n - 16 - - g5769.t1 - PTHR10887 - - - - - - - Cre07.g355800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 2 - - g8273.t1 - - - - - - - - - Cre03.g178050 MOT51 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g3684.t1,MOT51 PF00400 PTHR22889 KOG1188 - - - AT2G47790.1 - Transducin/WD40 repeat-like superfamily protein Cre03.g154400 MFT15 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 3 - - g3146.t1,Cre03.g154400.t1.1,MFT15 - PTHR24003 - - - - - - - Cre09.g398400 TRP5 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 15 Transient receptor potential ion channel protein C-terminal 350 AA similar to transient receptor potential Ca2+ channel, involved in Ca2+ homeostasis, but N-terminal region has no similarity in databases; additional transmembrane helix at pos 1189-1211; member of a family of at least 8 TRP proteins g9313.t1,Cre09.g398400.t1.1,TRP5 PF00520 PTHR13800 - - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 - - - Cre12.g546877 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g13799.t1,Cre27.g774768.t1.1,Cre27.g774768.t1.2, g13799.t2,Cre27.g774768.t2.1 - - - - - - - - - Cre09.g393450 FAP233 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - - Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g9420.t1 PF02469 - - - - - - - - Cre05.g238550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g5500.t1 - - - - - - - - - Cre16.g666576 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g16086.t1 - - - - - - - - - Cre07.g349650 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n downregulated 18 - - g8135.t1,Cre07.g349650.t1.1 - - - - - - AT5G55360.1 - MBOAT (membrane bound O-acyl transferase) family protein Cre08.g383702 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - - - - g9032.t1 PF00179 PTHR10044,PTHR10044:SF53 KOG0417 6.3.2.19 K10586 GO:0016881 AT3G15355.1 PFU1,UBC25 ubiquitin-conjugating enzyme 25 Cre12.g557250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g13384.t1,Cre12.g557250.t1.1, g13384.t2 PF00350 PTHR11216,PTHR11216:SF1 - - - GO:0003924,GO:0005525 AT4G05520.1 ATEHD2,EHD2 EPS15 homology domain 2 Cre03.g165050 PMA4 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - - - - g3383.t1,Cre03.g165050.t1.1,PMA4 PF00702,PF00690,PF00122 PTHR24093:SF61,PTHR24093 KOG0205 - - GO:0003824,GO:0008152,GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0000166,GO:0046872 AT3G47950.1 AHA4,HA4 H(+)-ATPase 4 Cre12.g517700 NYC1,SDR21 - 0 4 1.0 1.0 0 4 1.0 1.0 O Y upregulated 18 Short-chain dehydrogenase/reductase, probably chlorophyll b reductase Short-chain dehydrogenase/reductase, probably chlorophyll b reductase. Conserved expressed protein of the short-chain dehydrogenase/reductase family; homolog of plant NYC1, Non-Yellow Coloring 1 (PMID: 17416733) g12766.t1,Cre12.g517700.t1.1,SDR21 PF00106 PTHR24314,PTHR24314:SF37 KOG0725 1.1.1.294 K13606 GO:0008152,GO:0016491 AT4G13250.1 NYC1 NAD(P)-binding Rossmann-fold superfamily protein Cre07.g341100 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g7973.t1, g7973.t2,Cre07.g341100.t1.1 - - - - - - - - - Cre07.g332700 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g7739.t1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT4G12020.3 ATWRKY19,MAPKKK11,MEKK4,WRKY19 protein kinase family protein Cre16.g655050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g15835.t1,Cre16.g655050.t1.1 - - - - - - - - - Cre01.g042200 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g946.t1 - - - - - - - - - Cre10.g455231 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g11172.t1,Cre10.g455231.t1.1 PF00685 PTHR10605,PTHR10605:SF3 KOG3704 - - GO:0008146 - - - Cre10.g420450 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g10403.t1,Cre10.g420450.t1.1 PF03762 PTHR18841 - - - GO:0030704 - - - Cre08.g362800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8497.t1,Cre08.g362800.t1.1 - - - - - - - - - Cre17.g713500 HFO22,HFO25 - 0 1 1.0 nan 0 1 1.0 nan O n - - Histone H4 Replication-linked Histone H4. Also annotated as HFO25 g17276.t1,Cre17.g713500.t1.1,HFO22,HFO25 PF00125 PTHR10484 KOG3467 - K11254 GO:0000786,GO:0003677,GO:0005634,GO:0006334 AT5G59690.1 - Histone superfamily protein Cre09.g401650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 13 - - g9231.t1,Cre09.g401650.t1.1 - - - - - - - - - Cre03.g164900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3380.t1, g3380.t2 PF00069 PTHR24359,PTHR24359:SF71 KOG0582 - - GO:0004672,GO:0005524,GO:0006468 AT5G14720.1, AT1G79640.1 - Protein kinase superfamily protein Cre01.g046237 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g1034.t1, g1034.t2 PF00176,PF00271 PTHR10799,PTHR10799:SF133 KOG1002 - - GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT3G20010.1 - SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related Cre14.g609150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g14686.t1 - - - - - - - - - Cre05.g239200 FAP275 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g5518.t1,Cre05.g239200.t1.1 - - - - - - - - - Cre02.g109250 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 1 - - g2240.t1 PF04055 - - - - GO:0003824,GO:0051536 AT1G60230.1 - Radical SAM superfamily protein Cre02.g090276 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g1686.t1 PF04857 PTHR15092,PTHR15092:SF17 - - - GO:0005634 AT1G55870.1 AHG2,ATPARN Polynucleotidyl transferase, ribonuclease H-like superfamily protein Cre01.g007550 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 10 - - g195.t1 PF05686 PTHR12203 - - - - AT3G61270.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre02.g117000 CYG21 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 17 Adenylate/guanylate cyclase Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g2422.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre09.g406350 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 17 - - g10073.t1 PF06027 PTHR14233 KOG2766 - - - AT3G59310.1 - Eukaryotic protein of unknown function (DUF914) Cre09.g393600 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g9417.t1,Cre09.g393600.t1.1 PF05916 PTHR21206 KOG3176 - K10735 - AT5G49010.1 SLD5 DNA replication protein-related Cre17.g697800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g16923.t1,Cre17.g697800.t1.1 PF01636 - - - - - - - - Cre17.g719325 - 0 15 1.0 1.0 0 15 1.0 1.0 O n - - - - g17407.t1 - - - - - - - - - Cre08.g379950 PHX12 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 3 - - g8944.t1,PHX12 - PTHR10869 - - - - AT2G43080.1 AT-P4H-1 P4H isoform 1 Cre06.g285350 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 10 - - g6633.t1, g6633.t2 - - - - - - - - - Cre02.g146600 AP4M4 - 0 1 1.0 nan 0 1 1.0 nan O n - - Mu4-Adaptin Expressed protein. Mu4-Adaptin, clathrin adaptor complex medium subunit, putative member of AP-4 complex g2529.t1,Cre02.g146600.t1.1,AP4M4 PF00928 PTHR11998,PTHR11998:SF13 KOG0937 - K12402 GO:0005515,GO:0006886,GO:0016192,GO:0030131 AT4G24550.2 - Clathrin adaptor complexes medium subunit family protein Cre12.g499700 MAE3,MFT3 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 2 MATE efflux family protein Putative MATE efflux family protein. Previously annotated as MFT3 g12584.t1,MAE3,MFT3 PF01554 PTHR11206:SF38,PTHR11206 KOG1347 - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT5G52450.1 - MATE efflux family protein Cre10.g452950 TRP1 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 16 Transient receptor potential ion channel protein Putative TRP-like ion channel protein, expressed in high light g11123.t1,TRP1 PF00520 PTHR10117,PTHR10117:SF26 - - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 - - - Cre03.g183200 CPC1 - 0 10 1.0 1.0 0 10 1.0 1.0 O n downregulated 13 Protein associated with central pair microtubule complex Mutations at CPC1 disrupt assembly of a central pair microtubule-associated complex and alter flagellar beat frequency in Chlamydomonas [PMID: 15292403]. Identified in the flagellar and basal body proteome as FBB7 [PMID: 15137946]; upregulated by deflagel g3797.t1,Cre03.g183200.t1.1,CPC1 PF06294 PTHR14919 - - - - AT5G47840.1 AMK2 adenosine monophosphate kinase Cre19.g750547 NDA2 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 2 Type-II calcium-dependent NADH dehydrogenase Putative mitochondrial NAD(P)H dehydrogenase. Rotenone-insensitive; external face of inner membrane (i.e. in the intermembrane space). Contains putative calcium-binding motif (EF-hand) found in plant NDB [PMID: 10571867; PMID: 14731260] g18128.t2,Cre33.g782800.t2.1,NDA2, g18128.t4,Cre33.g782800.t1.1,Cre33.g782800.t1.2,NDA2, g18128.t3,Cre33.g782800.t3.1,NDA2, g18128.t1,Cre33.g782800.t4.1,NDA2 PF07992,PF00070 PTHR22915:SF4,PTHR22915, PTHR22915,PTHR22915:SF4 - 1.6.99.3 K03885 GO:0016491,GO:0050660,GO:0055114 AT4G21490.1 NDB3 NAD(P)H dehydrogenase B3 Cre17.g740700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g17916.t1,Cre17.g740700.t1.1 PF05517 PTHR12932 - - - - - - - Cre02.g144600 PTB9 - 0 1 1.0 nan 0 1 1.0 nan SP n - - Sodium/phosphate symporter Putative phosphate transporter, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters; present in a cluster of four highly related PTB family members on scaffold 24, including PTB12, PTB5 and PTB4. g2579.t1,PTB9 PF01384 PTHR11101:SF7,PTHR11101 KOG2493 - K14640 GO:0005315,GO:0006817,GO:0016020 AT3G26570.1 ORF02,PHT2;1 phosphate transporter 2;1 Cre03.g195600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g4053.t1,Cre03.g195600.t1.1 PF01204 PTHR23403 KOG0602 3.2.1.28 K01194 GO:0004555,GO:0005991 AT4G24040.1 ATTRE1,TRE1 trehalase 1 Cre02.g144606 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g2581.t1, g2581.t2 - - - - - - - - - Cre11.g479900 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 4 - - g11912.t1,Cre11.g479900.t1.1 - - - - - - - - - Cre04.g225650 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g4931.t1,Cre04.g225650.t1.1 PF00031 PTHR12319:SF1,PTHR12319 - - - GO:0004869 AT5G47550.1 - Cystatin/monellin superfamily protein Cre14.g623200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g15021.t1 PF02789,PF00883 PTHR11963 - - - GO:0004177,GO:0005622,GO:0006508 AT2G24200.1 - Cytosol aminopeptidase family protein Cre03.g191776 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g3969.t1 - - - - - - - - - Cre09.g399589 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g9923.t1,Cre02.g136850.t1.1,Cre02.g136850.t1.2 PF09754 PTHR12970 KOG3112 - - - AT3G18940.1 - clast3-related Cre09.g412850 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 6 - - g10221.t1 - - - - - - AT5G59960.1 - - Cre11.g478050 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g11868.t1, g11868.t2 PF01753 PTHR13244 - - - GO:0008270 AT5G50450.1 - HCP-like superfamily protein with MYND-type zinc finger Cre17.g708800 GSH2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Glutathione synthetase Catalyzes the addition of glycine to gamma-glutamylcysteine, forming glutathione (GSH synthetase) [EC:6.3.2.3]; higher plant enzyme is predicted chloroplastic, but found in the cytosol (PMID: 16328783) g17171.t1,GSH2 PF03199,PF03917 PTHR11130 KOG0021 6.3.2.3 K01920 GO:0004363,GO:0005524,GO:0006750 AT5G27380.1 GSH2,GSHB glutathione synthetase 2 Cre19.g750897 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 10 - - g18136.t1,Cre33.g782500.t2.1, g18136.t2,Cre33.g782500.t1.1 PF00383 PTHR11086 KOG3127 3.5.4.12 K01493 GO:0008270,GO:0016787 AT3G48540.1 - Cytidine/deoxycytidylate deaminase family protein Cre12.g561350 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 6 - - g13290.t1 PF01753 PTHR13244 - - - GO:0008270 AT2G24640.1 UBP19 ubiquitin-specific protease 19 Cre09.g400219 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g9957.t1 - PTHR12406:SF22,PTHR12406 - - - - AT1G33270.1 - Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein Cre16.g687350 ACO3 - 0 5 1.0 1.0 0 5 1.0 1.0 M n downregulated 15 - - g16343.t1,Cre16.g687350.t1.1,ACO3 PF01756,PF02770,PF00441 PTHR10909,PTHR10909:SF94 KOG0135 1.3.3.6 K00232 GO:0003997,GO:0005777,GO:0006635,GO:0055114,GO:0003995,GO:0016627 AT1G06290.1 ACX3,ATACX3 acyl-CoA oxidase 3 Cre16.g675076 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g16727.t1,Cre01.g066200.t1.1 - - - - - - - - - Cre17.g698400 LCI31 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 4 Low-CO2-inducible protein Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145], appears in their table as Lci29 rather than LC g16938.t1,Cre17.g698400.t1.1 - - - - - - AT3G51100.3 - - Cre16.g686000 SRS15 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g16375.t1,SRS15 PF01585,PF01805 PTHR23340 - - K13096 GO:0003676,GO:0005622,GO:0003723,GO:0006396 AT3G52120.1 - SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein Cre10.g449850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g11058.t1 - - - - - - - - - Cre07.g337800 MRPS17 - 0 1 1.0 nan 0 1 1.0 nan C n - 5 Mitochondrial ribosomal protein S17 Putative mitochondrial ribosomal protein S17, imported to mitochondria g7858.t1,Cre07.g337800.t1.1,MRPS17 PF00366 PTHR10744,PTHR10744:SF1 KOG1740 - - GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT3G18880.1 - Nucleic acid-binding, OB-fold-like protein Cre12.g509300 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g12366.t1,Cre12.g509300.t1.1 - - - - - - AT5G64160.1 - - Cre06.g281850 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g6556.t1,Cre06.g281850.t1.1 - - - - - - - - - Cre04.g211700 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 - - g4745.t1 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 AT5G19330.1 ARIA ARM repeat protein interacting with ABF2 Cre16.g669800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g16234.t1,Cre16.g669800.t1.1 PF00069 PTHR24354:SF139,PTHR24354 KOG0616 2.7.11.11 K04345 GO:0004672,GO:0005524,GO:0006468 AT4G33080.1 - AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Cre01.g031850 ACD1 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 - - g720.t1,ACD1 - PTHR10314,PTHR10314:SF29 - - - - AT3G26115.1 - Pyridoxal-5\'-phosphate-dependent enzyme family protein Cre13.g575850 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14153.t1,Cre13.g575850.t1.1 PF05368 PTHR10366,PTHR10366:SF151 - - - - AT2G34460.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre03.g172900 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 9 - - g3565.t1 PF11371 - - - - - - - - Cre06.g278124 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g6270.t1 PF10367,PF10366 PTHR12894 - - - - AT4G36630.1 EMB2754 Vacuolar sorting protein 39 Cre06.g278126 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g6272.t1,Cre13.g594800.t1.1,Cre13.g594800.t1.2 - - - - - - AT5G47400.1 - - Cre06.g278127 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 8 - - g6273.t1,Cre13.g594850.t1.1,Cre13.g594850.t1.2 - - - - - - - - - Cre06.g278121 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated - - - g6267.t1,Cre13.g594600.t1.1,Cre13.g594600.t1.2 - - - - - - - - - Cre06.g278122 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 17 - - g6268.t1,Cre13.g594650.t1.1,Cre13.g594650.t1.2 PF02886,PF01273 PTHR10504:SF49,PTHR10504 - - - GO:0008289 AT3G20270.1 - lipid-binding serum glycoprotein family protein Cre06.g278123 VPS39 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 Subunit of VPS-C complex Hypothetical Conserved Protein. Similar to VPS39 homologues, components of VPS-C complex. Splicing is somewhat speculative, may still be missing exons. g6269.t1,Cre13.g594700.t1.1,VPS39 - - - - - - - - - Cre06.g288350 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g6693.t1 - - - - - - - - - Cre04.g226301 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g4953.t1 - - - - - - - - - Cre16.g691776 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g16878.t1,Cre01.g072750.t1.1,Cre01.g072750.t1.2 PF07500 PTHR11477 - - - GO:0006351 AT2G38560.1 TFIIS transcript elongation factor IIS Cre06.g273200 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g6129.t1 PF00083 PTHR24003 KOG0254 - - GO:0016021,GO:0022857,GO:0055085 AT5G43350.1 ATPT1,PHT1;1 phosphate transporter 1;1 Cre05.g241632 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g5327.t1,Cre24.g770650.t1.1,Cre24.g770650.t1.2 PF01753 PTHR13244 - - - GO:0008270 - - - Cre04.g227650 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 16 - - g4982.t1 - - - - - - - - - Cre03.g193600 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g4006.t1, g4006.t2,Cre03.g193600.t1.1 PF01636 PTHR11584:SF147,PTHR11584 - - - - - - - Cre06.g308700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 17 - - g7145.t1,Cre06.g308700.t1.1 - - - - - - AT5G55380.1 - MBOAT (membrane bound O-acyl transferase) family protein Cre12.g541800 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 - - g13737.t1,Cre12.g541800.t1.1 PF02897,PF00326 PTHR11757,PTHR11757:SF2 KOG2237 3.4.21.26 K01322 GO:0004252,GO:0006508,GO:0008236 AT1G76140.1 - Prolyl oligopeptidase family protein Cre03.g192950 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g3992.t1,Cre03.g192950.t1.1 - PTHR11584:SF165,PTHR11584 - - - - - - - Cre07.g341350 TRP11 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 2 Transient receptor potential ion channel protein Transient potential receptor channel g7964.t1,Cre07.g341350.t1.1,TRP11 PF08016 PTHR10582 - - - - - - - Cre06.g296200 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6851.t1,Cre06.g296200.t1.1 PF00069 PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G31500.1 CPK24 calcium-dependent protein kinase 24 Cre16.g655283 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g15840.t1 - - - - - - - - - Cre05.g241639 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 4 - - g5334.t1,Cre24.g770300.t1.1 PF02810 - - - - - - - - Cre11.g467774 - 0 1 1.0 nan 0 1 1.0 nan SP n - 1 - - g11704.t1 PF02493 PTHR23084 - - - - AT1G77740.1 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 Cre04.g223375 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g4874.t1 - - - - - - - - - Cre13.g606652 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 8 - - g14626.t1 PF00078 PTHR10178,PTHR10178:SF42 - - - GO:0003723,GO:0003964,GO:0006278 - - - Cre13.g578012 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - - - g14201.t1 PF08819 PTHR11061 - - - - AT3G27180.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre17.g731350 SDR28 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 10 - - g17672.t1,SDR28 PF00106 PTHR24322:SF120,PTHR24322 KOG1208 - - GO:0008152,GO:0016491 AT5G61830.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre08.g367600 ASL1,OASTL1 - 0 1 1.0 nan 0 1 1.0 nan O n - - O-acetylserine (Thiol)-lyase/cysteine synthase Cysteine synthase, chloroplast precursor; O-acetylserine sulfhydrylase, (O-acetylserine (Thiol)-lyase), (CYSL), (CYSM). Previously annotated as OASTL1 g8613.t1,Cre08.g367600.t1.1,ASL1 PF00291 PTHR10314,PTHR10314:SF8 KOG1252 - - GO:0003824,GO:0008152,GO:0030170 AT3G59760.1 ATCS-C,OASC O-acetylserine (thiol) lyase isoform C Cre13.g584551 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g14348.t1 PF08648 - KOG4207 - - - - - - Cre03.g163900 PWR3 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 Predicted PWR protein PWR motif protein; belongs to a family of 4 genes with no clear homologues in other organisms, except for a similarity with DUF506 proteins (plant-specific, unknown function). The family name comes from the perfectly conserved PWR motif shared between the g3360.t1,PWR3 PF04720 - - - - - AT3G54550.1 - Protein of unknown function (DUF506) Cre14.g609900 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n upregulated 5 - - g14701.t1 PF03351,PF03188 PTHR23130 KOG4293 - - GO:0016021 AT3G25290.1 - Auxin-responsive family protein Cre03.g143827 FBB7 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 Flagellar/basal body protein Conserved protein found in ciliated organisms, unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation g2855.t1,Cre01.g055900.t1.1,FBB7 PF00400 PTHR22838 KOG1003 - - - AT1G61210.1 - Transducin/WD40 repeat-like superfamily protein Cre12.g495701 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g12135.t1 PF00530 - - - - GO:0005044,GO:0016020 - - - Cre07.g313850 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g7263.t1 PF00400 PTHR22844,PTHR22844:SF8 KOG0271 - - - AT3G49660.1 - Transducin/WD40 repeat-like superfamily protein Cre12.g485550 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 6 - - g12051.t1,Cre12.g485550.t1.1 PF00682 PTHR10277:SF1,PTHR10277 KOG2368 4.1.3.4 K01640 GO:0003824 AT2G26800.2 - Aldolase superfamily protein Cre07.g314800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g7283.t1,Cre07.g314800.t1.1 - - - - - - - - - Cre16.g653700 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 9 - - g15807.t1 PF01237 PTHR10972,PTHR10972:SF8 KOG2209 - K06867 - AT2G31020.1 ORP1A OSBP(oxysterol binding protein)-related protein 1A Cre02.g076650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g1378.t1,Cre02.g076650.t1.1 - - - - - - - - - Cre03.g196651 RAD10 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g4073.t1,Cre03.g196650.t1.3,RAD10 PF03834 PTHR12749 KOG2841 - K10849 GO:0003684,GO:0004519,GO:0005634,GO:0006281 AT3G05210.1 ERCC1,UVR7 nucleotide repair protein, putative Cre06.g270050 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g6059.t1 - - - - - - - - - Cre04.g224683 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4902.t1 PF00063 PTHR13140,PTHR13140:SF31 - - - GO:0003774,GO:0005524,GO:0016459 AT5G20490.2 ATXIK,XI-17,XIK Myosin family protein with Dil domain Cre16.g695100 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 - - g15568.t1 PF00441,PF02771,PF02770 PTHR10909,PTHR10909:SF129 KOG0138 1.3.3.6 K00232 GO:0016627,GO:0055114,GO:0003995 AT3G51840.1 ACX4,ATG6,ATSCX acyl-CoA oxidase 4 Cre11.g467724 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g11654.t1,Cre22.g765200.t1.1,Cre22.g765200.t1.2 - - - - - - - - - Cre11.g467725 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 3 - - g11655.t1,Cre22.g765150.t1.1,Cre22.g765150.t1.2 - - - - - - - - - Cre11.g467726 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g11656.t1,Cre22.g765100.t1.1,Cre22.g765100.t1.2 PF04506 PTHR13117 KOG2864 - - GO:0005319,GO:0006869,GO:0016021 AT5G07630.1 - lipid transporters Cre02.g143407 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g2830.t1,Cre38.g785250.t1.1 - - - - - - - - - Cre02.g143400 PDE27 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 18 - - g2615.t1,PDE27 PF00233,PF03924 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre11.g467721 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n downregulated 12 - - g11651.t1,Cre22.g765350.t1.1,Cre22.g765350.t1.2 - - - - - - - - - Cre11.g467723 KAS1 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 3-ketoacyl-CoA-synthase 3-ketoacyl-CoA-synthase component of plastidic multimeric fatty acid synthase g11653.t1,Cre22.g765250.t1.1,Cre22.g765250.t1.2,KAS1, g11653.t2,Cre22.g765250.t2.1,KAS1 PF00109,PF02801 PTHR11712:SF52,PTHR11712 KOG1394 - - GO:0003824,GO:0009058 AT5G46290.1 KAS I,KAS1 3-ketoacyl-acyl carrier protein synthase I Cre16.g692450 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - - - g15629.t1,Cre16.g692450.t1.1 - - - - - - - - - Cre17.g732300 GAL1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 Galactose kinase - g17697.t1,Cre17.g732300.t1.1,GAL1 PF08544,PF10509,PF00288 PTHR10457:SF7,PTHR10457 KOG0631 2.7.1.6 K00849 GO:0005524,GO:0016301,GO:0016310 AT3G06580.1 GAL1,GALK Mevalonate/galactokinase family protein Cre17.g723700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g17504.t1 PF00168 PTHR10774 KOG1030 - - GO:0005515 AT4G34150.1 - Calcium-dependent lipid-binding (CaLB domain) family protein Cre16.g673465 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g16123.t1 - - - - - - - - - Cre12.g514700 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g12701.t1,Cre12.g514700.t1.1 PF00561 PTHR10992,PTHR10992:SF54 KOG1454 - - - AT5G13800.1 CRN1,PPH pheophytinase Cre14.g617002 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g14865.t1 - - - - - - - - - Cre16.g682138 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g16792.t1 - - - - - - - - - Cre16.g681802 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g16789.t1,Cre01.g068850.t1.1 PF01590,PF00069,PF07714 PTHR23257 KOG1187 - - GO:0005515,GO:0004672,GO:0005524,GO:0006468 AT1G79570.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre05.g234000 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g5093.t2, g5093.t1 - PTHR23257,PTHR23257:SF99 - - - - - - - Cre01.g019400 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g454.t1,Cre01.g019400.t1.1 - - - - - - - - - Cre09.g388750 TEF21 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 Phosphoinositide phosphatase Putative phosphoinositide phosphatase, mitochondrial localization assumed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018] g9525.t1,Cre09.g388750.t1.1,TEF21 PF02383 PTHR11200 KOG1889 - - GO:0042578 AT3G51460.1 RHD4 Phosphoinositide phosphatase family protein Cre10.g437700 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10784.t2, g10784.t3,Cre10.g437700.t1.1, g10784.t1 - - - - - - - - - Cre16.g678000 CPL22 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 5 - - g16555.t1,Cre16.g678000.t1.1 PF11891 - - - - - AT3G08640.1 - Protein of unknown function (DUF3411) Cre02.g112950 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g2326.t1,Cre02.g112950.t1.1 PF09807 - - - - - - - - Cre09.g409325 - 0 9 1.0 1.0 0 9 1.0 1.0 - n - 18 - - g10144.t1,Cre09.g409336.t1.2 - - - - - - - - - Cre06.g266500 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g5982.t1,Cre06.g266500.t1.1 - - - - - - - - - Cre06.g249150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g5581.t1 PF00069,PF02136 PTHR24361:SF40,PTHR24361 KOG0581 - - GO:0004672,GO:0005524,GO:0006468,GO:0005622,GO:0006810 AT5G40440.1 ATMKK3,MKK3 mitogen-activated protein kinase kinase 3 Cre02.g074650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 8 - - g1331.t1,Cre02.g074650.t1.1 PF00887,PF01344 PTHR23244,PTHR23244:SF29 KOG0379 - - GO:0000062,GO:0005515 AT3G05420.2 ACBP4 acyl-CoA binding protein 4 Cre06.g277200 BIO1,BIOA - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 3 Diaminopelargonic acid synthase Diaminopelargonic acid synthase / adenosylmethionine-8-amino-7-oxononanoate aminotransferase. Previously annotated as BIOA g6213.t1,Cre06.g277200.t1.1,BIOA PF00202 PTHR11986,PTHR11986:SF4 KOG1401 2.6.1.62 K00833 GO:0008483,GO:0030170 AT5G57590.1 BIO1 adenosylmethionine-8-amino-7-oxononanoate transaminases Cre07.g323800 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g7479.t1,Cre07.g323800.t1.1 - - - - - - - - - Cre03.g180017 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g3731.t1, g3731.t2 - - - - - - - - - Cre16.g693500 ISG1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 Hydroxyproline-rich cell wall protein Putative extracellular matrix protein (cell wall protein) g15608.t1,ISG1 - - - - - - - - - Cre01.g028350 DEG8 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 6 DegP-type protease (HtrA) similar to DegP protease; serine protease, trypsin family, DegP type (HtrA) (protease Do) most similar to At5g39830 (DegP8) [PMID: 11299370, PMID: 12185496]; one PDZ domain, probably involved in substrate recognition and protease activation [PMID: g647.t1 PF00089 PTHR22939,PTHR22939:SF23 KOG1320 3.4.21.- K01362 GO:0004252,GO:0006508 AT5G39830.1 DEG8,DEGP8 Trypsin family protein with PDZ domain Cre03.g205249 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g4413.t1,Cre19.g754050.t1.1 PF00225 PTHR24115,PTHR24115:SF316 KOG0247 - - GO:0003777,GO:0005524,GO:0007018 AT3G49650.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre06.g288450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g6695.t1,Cre06.g288450.t1.1 - - - - - - AT4G26580.1 - RING/U-box superfamily protein Cre10.g422400 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g10450.t1 - - - - - - - - - Cre04.g221301 CYCD5 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g4830.t1,CYCD5 PF00134 PTHR10177,PTHR10177:SF76 - - - - AT1G20610.1 CYCB2;3 Cyclin B2;3 Cre13.g590300 URK2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 16 - - g14476.t1,URK2 PF01928,PF00485 PTHR10285 KOG3308 - - GO:0006796,GO:0005524,GO:0008152,GO:0016301 AT1G26190.1 - Phosphoribulokinase / Uridine kinase family Cre07.g331350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g7709.t1 - - - - - - - - - Cre09.g389089 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g9517.t1,Cre09.g389089.t1.1 PF03473,PF03476 PTHR14237 KOG2362 - - GO:0003824,GO:0030151,GO:0030170 AT1G30910.1 - Molybdenum cofactor sulfurase family protein Cre16.g660601 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 16 - - g15955.t1 - - - - - - - - - Cre16.g679750 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g16515.t1,Cre16.g679750.t1.1 PF01738 PTHR17630,PTHR17630:SF19 KOG3043 - - GO:0016787 AT3G23570.1 - alpha/beta-Hydrolases superfamily protein Cre10.g456300 NAC2,MBD1 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 4 PsbD mRNA maturation factor Nac2, chloroplastic; involved in splicing Gene product is required for accumulation of the chloroplast psbD mRNA, originally called NAC2 [PMID: 10880449] g11196.t1,MBD1,NAC2 - PTHR11246,PTHR11246:SF11 - - - - AT3G17040.1 HCF107 high chlorophyll fluorescent 107 Cre13.g591650 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g14507.t1,Cre13.g591650.t1.1 - - - - - - - - - Cre17.g726050 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g17557.t1,Cre17.g726050.t1.1 PF00240,PF00443 PTHR24006:SF39,PTHR24006 KOG1872 3.1.2.15 K11843 GO:0005515,GO:0004221,GO:0006511 AT3G21280.1 UBP7 ubiquitin-specific protease 7 Cre02.g087950 TSM1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 - - g1636.t1,Cre02.g087950.t1.1,TSM1 PF01588,PF09334 PTHR11946,PTHR11946:SF20 KOG1247 6.1.1.10 K01874 GO:0000049,GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418 AT4G13780.1 - methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative Cre03.g146227 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g2976.t2,Cre01.g061050.t2.1, g2976.t1,Cre01.g061050.t1.1,Cre01.g061050.t1.2 - - - - - - - - - Cre12.g521650 - 0 10 1.0 1.0 0 10 1.0 1.0 C n upregulated 6 - - g12850.t1,Cre12.g521650.t1.1 PF00975,PF03982 PTHR22753:SF5,PTHR22753 KOG4409 - - GO:0009058,GO:0016788,GO:0016747 AT1G54570.1 - Esterase/lipase/thioesterase family protein Cre09.g392950 TMG12 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g9430.t1,Cre09.g392950.t1.1,TMG12 PF00588 PTHR12029,PTHR12029:SF22 - - - GO:0003723,GO:0006396,GO:0008173 AT5G15390.1 - tRNA/rRNA methyltransferase (SpoU) family protein Cre09.g397350 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 10 - - g9335.t1 PF06733 PTHR11472:SF6,PTHR11472 KOG1132 - - GO:0003677,GO:0004003,GO:0005524 AT1G20720.1 - RAD3-like DNA-binding helicase protein Cre03.g177500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g3670.t1 PF03134 PTHR12300 - - - - AT5G50720.1 ATHVA22E,HVA22E HVA22 homologue E Cre16.g691900 PUS19 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g15641.t1,Cre16.g691900.t1.1,PUS19 PF01416 PTHR11142 - - - GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT2G30320.1 - Pseudouridine synthase family protein Cre17.g721850 SSA16 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 14 Predicted protein Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA) g17464.t1,Cre17.g721850.t1.1,SSA16 PF02816 PTHR14187 - 2.7.11.20 K08292 GO:0004674,GO:0005524,GO:0006468 - - - Cre09.g406983 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g10089.t1,Cre09.g407000.t1.2 PF07683 PTHR13748,PTHR13748:SF4 - - - - - - - Cre15.g643028 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g15492.t1 - - - - - - - - - Cre10.g439050 MITC7 - 0 1 1.0 nan 0 1 1.0 nan C n - - Mitochondrial substrate carrier protein Mitochondrial substrate carrier protein. Previously annotated as MITC7 g10813.t1,Cre10.g439050.t1.1,MITC7 PF00153 PTHR24089:SF34,PTHR24089 KOG0752 - - - AT5G51050.1 - Mitochondrial substrate carrier family protein Cre03.g181050 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 17 - - g3752.t1 - - - - - - - - - Cre12.g518700 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 14 - - g12788.t1 - - - - - - - - - Cre10.g431700 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 11 - - g10656.t1,Cre10.g431700.t1.1 - - - - - - - - - Cre04.g216700 PHOX,PHO5 - 1 37 1.0 1.0 1 37 1.0 1.0 SP n upregulated 5 Phosphate-repressible alkaline phosphatase Major phosphate-repressible, calcium-dependent, secreted extracellular alkaline phosphatase [PMID: 8754684; PMID: 16400166] homolog of Volvox carteri PHOX [gi:4160586, PMID: 9880549]. Previously annotated as PHOX. Model may not be complete g4506.t1,Cre04.g216700.t1.1,PHO5,PHOX PF05787 - - - - - - - - Cre17.g747397 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 13 - - g18064.t1 PF00069 PTHR24362:SF126,PTHR24362 KOG0591 - - GO:0004672,GO:0005524,GO:0006468 AT3G63280.1 ATNEK4,NEK4 NIMA-related kinase 4 Cre07.g331200 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g7706.t1 - - - - - - - - - Cre01.g054300 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g1199.t1 - - - - - - - - - Cre14.g620200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g14945.t1 PF10998 - - - - - AT5G35460.1 - - Cre14.g620800 - 0 10 1.0 1.0 0 10 1.0 1.0 M n - - - - g14961.t1,Cre14.g620800.t1.1 - - - - - - - - - Cre10.g433700 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 17 - - g10698.t1, g10698.t2 - - - - - - - - - Cre17.g739350 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 14 - - g17880.t1 - - - - - - - - - Cre14.g623576 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 15 - - g15028.t1 - - - - - - - - - Cre03.g165400 COX16 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 Cytochrome c oxidase assembly factor Putative mitochondrial inner membrane protein, required for assembly of cytochrome c oxidase (mitochondrial complex IV); similar to cytochrome c oxidase assembly factor 16 of yeast. g3393.t1,Cre03.g165400.t1.1,COX16 - - - - - - - - - Cre12.g522300 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 - - g12863.t1 PF05517 - KOG1909 - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre15.g637050 FAP274 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; FAP274b, minor variant arising from alternative transcription start; function unknown; possible target of a miRNA directing cleavage at end of first exon (PMID: 17538623) g15364.t1,Cre15.g637050.t1.1 - - - - - - - - - Cre17.g729750 NAT3,AANAT - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g17636.t1,Cre17.g729750.t1.1,AANAT,NAT3 PF00583 - KOG4144 - - GO:0008080,GO:0008152 - - - Cre01.g012600 GPM2,PGM1 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 8 Phosphoglucomutase Phosphoglucomutase; differs from the GPMs found in plants and other algae g312.t1,GPM2 PF02878,PF02879,PF00408,PF02880 PTHR22573:SF2,PTHR22573 KOG1220 5.4.2.2 K01835 GO:0005975,GO:0016868 - - - Cre09.g387801 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g9596.t1,Cre02.g122350.t1.1 PF10607,PF00622 PTHR12864 KOG1477 - - GO:0005515 AT1G35470.2 - SPla/RYanodine receptor (SPRY) domain-containing protein Cre13.g572050 SMG1 - 0 12 1.0 1.0 0 12 1.0 1.0 SP n - - Nonsense-mediated decay (NMD) pathway protein Putative SMG1 homolog, a nonsense-mediated decay (NMD) pathway protein; phosphatidylinositol 3-kinase-related protein kinase. Best homologous candidate for SMG1 gene involved in nonsense mediated RNA decay; contains a Phosphatidylinositol 3-kinase and a g14068.t1,SMG1 PF02260,PF00454 PTHR11139,PTHR11139:SF23 - - K08873 GO:0005515,GO:0016773 AT1G50030.1 TOR target of rapamycin Cre14.g617276 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g14873.t1 - - - - - - - - - Cre17.g714950 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g17308.t1,Cre17.g714950.t1.1 PF00097 PTHR23012,PTHR23012:SF29 - - - - - - - Cre08.g361850 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 2 - - g8471.t1,Cre08.g361850.t1.1 PF05981 - - - - - - - - Cre01.g008350 - 0 1 1.0 nan 0 1 1.0 nan SP n - 18 - - g212.t1 - - - - - - - - - Cre03.g168750 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g3473.t1 - - - - - - - - - Cre03.g167924 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g3454.t1,Cre03.g167950.t1.2 PF04387 PTHR11035,PTHR11035:SF3 KOG3187 4.2.1.- K10703 - AT5G10480.1 PAS2,PEP Protein-tyrosine phosphatase-like, PTPLA Cre02.g094750 - 2 65 1.0 1.0 2 65 1.0 1.0 O n - 10 - - g1792.t2, g1792.t1,Cre02.g094750.t1.1 - - - - - - - - - Cre09.g393300 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 10 - - g9423.t1,Cre09.g393300.t1.1 - - - - - - - - - Cre12.g554050 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g13452.t1 - - - - - - - - - Cre02.g109000 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g2234.t2, g2234.t1,Cre02.g109000.t1.1 PF03254 - - - - GO:0008107,GO:0016020,GO:0042546 - - - Cre17.g743897 PRX7 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 Peroxiredoxin Related to thioredoxin-dependent peroxide reductase, mitochondrial precursor (Perioredoxin 3) (Antioxidant protein 1) (AOP-1) (MER5 protein)(PRX III) (PDX3)(TDX) g17993.t1,Cre20.g760750.t1.1,Cre20.g760750.t1.2,PRX7 PF10417,PF00085,PF00578 PTHR10681 KOG0852 1.11.1.15 K03386 GO:0051920,GO:0045454,GO:0016209,GO:0016491 AT3G11630.1 - Thioredoxin superfamily protein Cre06.g291400 GAK2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 - - g6753.t1,GAK2 PF00288 - - - - GO:0005524,GO:0016301,GO:0016310 - - - Cre16.g658725 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g15913.t1 - - - - - - - - - Cre17.g732533 - 0 13 1.0 1.0 0 13 1.0 1.0 C n - - - - g17702.t1 - - - - - - - - - Cre09.g393691 KDG4 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 Diacylglycerol/ceramide/sphingosine kinase Diacylglycerol/ceramide/sphingosine kinase. Homology to ceramide kinase [Mus musculus] and diacylglycerol kinase [Arabidopsis thaliana] g9761.t1,Cre02.g129700.t1.1,KDG4 PF00781 PTHR12358,PTHR12358:SF6 KOG1115 2.7.1.138 K04715 GO:0004143,GO:0007205 AT5G51290.1 - Diacylglycerol kinase family protein Cre07.g338400 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g7872.t1 PF08652 PTHR12395 KOG1982 - - - AT4G17620.1 - glycine-rich protein Cre03.g189500 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g3924.t1,Cre03.g189500.t1.1 PF00293 PTHR22769 - - - GO:0016787 AT1G68760.1 ATNUDT1,ATNUDX1,NUDX1 nudix hydrolase 1 Cre07.g333450 SGT1 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 15 - - g7753.t1,Cre07.g333450.t1.1,SGT1 PF03033 PTHR11926,PTHR11926:SF61 - 2.4.1.173 K05841 GO:0008152,GO:0016758,GO:0005975,GO:0030259 AT3G07020.1 - UDP-Glycosyltransferase superfamily protein Cre09.g401886 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 L-ascorbate peroxidase, heme-containing L-ascorbate peroxidase, heme-containing. Previously annotated as CCPR1 for cytochrome c peroxidase g10003.t1,Cre02.g139650.t1.1,Cre02.g139650.t1.2 PF00141 - - 1.11.1.5 K00428 GO:0004601,GO:0006979,GO:0020037,GO:0055114 AT4G35000.1 APX3 ascorbate peroxidase 3 Cre14.g629200 FAP98 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g15154.t1,Cre14.g629200.t1.1 - - - - - - - - - Cre02.g097227 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 14 - - g1978.t1,Cre02.g097227.t1.1 - - - - - - - - - Cre09.g389875 PDE7 - 0 10 1.0 1.0 0 10 1.0 1.0 C n downregulated 11 3\',5\'-cyclic-nucleotide phosphodiesterase Cyclic nucleotide phosphodiesterase similar to calmodulin dependent phosphodiesterase from Bos taurus AAA92555.1 g9653.t1,Cre02.g125050.t1.1,PDE7 PF00233 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre13.g568500 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 - - g13990.t1 - - - - - - AT3G55730.1 AtMYB109,MYB109 myb domain protein 109 Cre09.g408800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g10132.t1,Cre09.g408800.t1.1 PF04749 PTHR15907 - - - - AT2G40935.1 - PLAC8 family protein Cre02.g097221 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g1977.t1 - PTHR19331,PTHR19331:SF369 - - - - - - - Cre07.g345001 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g8028.t1,Cre07.g345001.t1.1 PF01936 - - - - - - - - Cre07.g345000 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g8027.t1 - - - - - - - - - Cre04.g213650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4705.t1,Cre04.g213650.t1.1 PF00651 PTHR26379,PTHR26379:SF178 KOG4591 - - GO:0005515 AT2G04740.1 - ankyrin repeat family protein Cre14.g618926 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g14914.t1 - - - - - - - - - Cre10.g420650 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 15 - - g10411.t1,Cre10.g420650.t1.1 PF00400 PTHR22847:SF228,PTHR22847 KOG0645 - - - AT3G21540.1 - transducin family protein / WD-40 repeat family protein Cre07.g318276 - 0 1 1.0 nan 0 1 1.0 nan - n - 11 - - g7357.t1 - - - - - - - - - Cre08.g375650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 2 - - g8849.t1 - PTHR22904,PTHR22904:SF16 KOG0551 - - - AT1G04130.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre03.g172376 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g3553.t1 - - - - - - - - - Cre17.g703750 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n upregulated 10 - - g17061.t1,Cre17.g703750.t1.1 - PTHR12295,PTHR12295:SF2 - - - - AT5G15680.1 - ARM repeat superfamily protein Cre09.g399178 CSN5 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 COP signalosome subunit Similar to COP signalosome subunit CSN5 g9912.t1,Cre02.g136300.t1.1,Cre02.g136300.t1.2,CSN5 PF01398 PTHR10410,PTHR10410:SF6 KOG1554 3.4.-.- K09613 GO:0005515 AT1G22920.1 AJH1,CSN5A,JAB1 COP9 signalosome 5A Cre12.g540050 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 13 - - g13775.t1,Cre12.g540050.t1.1 PF00027 - - - - - - - - Cre01.g001750 TIG1 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 Chloroplast trigger factor Involved in protein folding; contains a peptidyl-prolyl cis-trans isomerase (FKBP-type) domain and N- and C-terminal domains involved in ribosome-binding; probably located in chloroplast stroma g43.t1,Cre01.g001750.t1.1,TIG1 PF05697,PF05698 - - - - GO:0006457,GO:0015031 AT5G55220.1 - trigger factor type chaperone family protein Cre03.g145567 CGL18 - 0 1 1.0 nan 0 1 1.0 nan C Y upregulated 4 Predicted protein Conserved expressed protein of unknown function; some similarity to sequence of unknown function in Arabidopsis NP_200368.2 GI:42568556 - may be chloroplast localized g2943.t1,Cre01.g059500.t1.1,CGL18 - - - - - - AT5G55570.1 - - Cre09.g398882 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 12 - - g9904.t1,Cre02.g135900.t1.1,Cre02.g135900.t1.2 PF08477 PTHR13236 KOG3929 - K10417 GO:0005525,GO:0005622,GO:0007264 - - - Cre06.g297800 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g6888.t1,Cre06.g297800.t1.1 - - - - - - - - - Cre05.g244150 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g5252.t1 - - - - - - - - - Cre03.g157650 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g3226.t1 - - - - - - - - - Cre02.g102300 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g2089.t1,Cre02.g102300.t1.1, g2089.t2 PF00314 - - - - - AT1G19320.1 - Pathogenesis-related thaumatin superfamily protein Cre04.g221150 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - - - g4827.t1 PF05686 PTHR12203,PTHR12203:SF16 - - - - - - - Cre10.g421300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g10426.t1,Cre10.g421300.t1.1 - - - - - - - - - Cre08.g374300 CGL115 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - - - - g8819.t1 PF09759 PTHR13255 - - - - AT4G00231.1 MEE50 ARM repeat superfamily protein Cre12.g542627 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g13789.t1 - - - - - - - - - Cre10.g431550 ADH6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g10653.t1,ADH6 PF08240,PF00107 PTHR11695,PTHR11695:SF298 KOG0024 - - GO:0008270,GO:0016491,GO:0055114 AT5G51970.1 - GroES-like zinc-binding alcohol dehydrogenase family protein Cre11.g481951 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 14 - - g11966.t1,Cre11.g481950.t1.3 - - - - - - - - - Cre12.g537750 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 15 - - g13224.t1,Cre12.g537750.t1.1 PF12068,PF00566 PTHR22957,PTHR22957:SF34 KOG4567 - - GO:0005097,GO:0005622,GO:0032313 AT5G52580.1 - RabGAP/TBC domain-containing protein Cre10.g463550 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 5 - - g11360.t1 PF00069 PTHR24349:SF122,PTHR24349 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT4G32830.1 AtAUR1,AUR1 ataurora1 Cre01.g045050 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g1006.t1,Cre01.g045050.t1.1 - - - - - - - - - Cre07.g351900 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 15 - - g8186.t1 PF00069,PF07714 PTHR23257:SF339,PTHR23257 KOG1187 - - GO:0004672,GO:0005524,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre01.g000400 ERR1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP Y - 9 - - g11.t1,Cre01.g000400.t1.1,ERR1 PF03407 PTHR10994:SF5,PTHR10994 - - - GO:0005783 AT2G35610.1 XEG113 xyloglucanase 113 Cre14.g608400 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 7 - - g14667.t1,Cre14.g608400.t1.1 - - - - - - - - - Cre01.g012450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g309.t1 PF00632,PF06012,PF06025 PTHR11254,PTHR11254:SF124 KOG0940 6.3.2.19 K10592 GO:0005622,GO:0006464,GO:0016881 AT1G55860.2 UPL1 ubiquitin-protein ligase 1 Cre02.g077650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g1400.t1,Cre02.g077650.t1.1 PF00782 PTHR23339,PTHR23339:SF35 - - - GO:0006470,GO:0008138 - - - Cre10.g428500 PHX14 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g10581.t1,PHX14 PF01549,PF03171 PTHR10869 - - - GO:0016491 AT3G06300.1 AT-P4H-2 P4H isoform 2 Cre05.g246377 ADA2 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g5208.t1,Cre05.g246350.t1.3,ADA2 PF00962 PTHR11409:SF30,PTHR11409 KOG1097 3.5.4.4 K01488 GO:0009168,GO:0019239 - - - Cre05.g246376 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g5207.t1 - - - - - - - - - Cre12.g496200 XPO2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g12662.t1,Cre12.g496200.t1.1,XPO2 PF08389 PTHR15952:SF11,PTHR15952 KOG2021 - K14288 - AT1G72560.1 PSD ARM repeat superfamily protein Cre16.g650000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g15727.t1,Cre16.g650000.t1.1 - PTHR14097 KOG4039 - - - - - - Cre03.g201215 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4377.t1 - - - - - - - - - Cre02.g105550 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 10 - - g2164.t1 - - - - - - - - - Cre16.g651350 - 0 18 1.0 1.0 0 18 1.0 1.0 SP n upregulated 17 - - g15756.t1 - - - - - - AT4G30790.1 - - Cre08.g385000 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g9060.t1,Cre08.g385000.t1.1 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT1G10850.1 - Leucine-rich repeat protein kinase family protein Cre12.g544700 PUF3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 2 Puf protein Contains pumilio-family RNA binding domains (PUF). Puf protein family thought to repress gene expression by affecting mRNA translation or stability. g13667.t1,PUF3 PF00806 PTHR12537,PTHR12537:SF13 KOG1488 - - GO:0003723 AT5G56510.1 APUM12,PUM12 pumilio 12 Cre03.g185500 FAP160 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - - Flagellar Associated Protein, acid phosphatase Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. Probably an histidine acid phosphatase g3844.t1 PF00328 PTHR12750,PTHR12750:SF9 KOG1057 - - GO:0003993 AT3G01310.2 - Phosphoglycerate mutase-like family protein Cre14.g632176 - 0 1 1.0 nan 0 1 1.0 nan SP n - 1 - - g15234.t1 PF00249 PTHR10641,PTHR10641:SF11 - - - - AT5G41020.1 - myb family transcription factor Cre10.g462200 HDA17 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g11330.t1,Cre10.g462200.t1.1,HDA17 PF02146 PTHR11085 KOG1905 2.4.2.31 K11416 GO:0006342,GO:0006355,GO:0006476,GO:0008270,GO:0016811,GO:0070403 AT5G55760.1 SRT1 sirtuin 1 Cre10.g465250 RSP11 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 Radial spoke protein 11 Flagellar radial spoke protein 11 (RSP11) at radial spoke stalk; containing an RIIa domain initially found in the regulatory subunit of cAMP dependent protein kinase. Gene originally termed PF25 [PMID: 16507594; PMID: 7204490; PMID: 16267272; GI:83284717] g11400.t1,Cre10.g465250.t1.1 PF02197 PTHR24970,PTHR24970:SF4 - - - GO:0007165,GO:0008603 - - - Cre11.g467644 CLPB1 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 13 ClpB chaperone, Hsp100 family Cytosolic ClpB chaperone, Hsp101 family, most similar to At1g74310 g11575.t1,Cre18.g746450.t1.1,CLPB1 PF02861,PF00004,PF07724,PF10431 PTHR11638,PTHR11638:SF50 KOG1051 - - GO:0019538,GO:0005524 AT1G74310.1 ATHSP101,HOT1,HSP101 heat shock protein 101 Cre10.g433950 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g10704.t1 - - - - - - AT1G52220.1 - - Cre10.g458626 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g11250.t1 - - - - - - - - - Cre10.g418851 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g10369.t1,Cre10.g418850.t1.2 - - - - - - - - - Cre02.g076000 STK1,STPK1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK1 g1363.t1,Cre02.g076000.t1.1,STK1,STPK1 PF00069 PTHR24343,PTHR24343:SF120 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT4G33950.1 ATOST1,OST1,P44,SNRK2-6,SNRK2.6,SRK2E Protein kinase superfamily protein Cre16.g677100 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 9 - - g16573.t1, g16573.t2 - - - - - - - - - Cre05.g247550 GST7 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g5181.t1,Cre05.g247550.t1.1,GST7 PF02798 PTHR11260,PTHR11260:SF8 KOG0867 - - GO:0005515 AT5G41210.1 ATGSTT1,GST10,GSTT1 glutathione S-transferase THETA 1 Cre03.g161950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g3318.t1 - - - - - - - - - Cre09.g391430 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g9695.t1,Cre02.g126850.t1.1,Cre02.g126850.t1.2 - - - - - - - - - Cre14.g615650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g14833.t1,Cre14.g615650.t1.1 - - - - - - - - - Cre17.g733425 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g17726.t1 - - - - - - - - - Cre03.g183451 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g3802.t1 - - - - - - - - - Cre12.g499250 PDE10 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 13 3\',5\'-cyclic-nucleotide phosphodiesterase Similar to calcium/calmodulin-dependent 3\',5\'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus g12596.t1,PDE10 PF00233 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre07.g356150 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g8280.t1,Cre07.g356150.t1.1 PF01435 PTHR10120,PTHR10120:SF17 KOG2719 3.4.24.84 K06013 GO:0004222,GO:0006508,GO:0016020 AT4G01320.1 ATSTE24,STE24 Peptidase family M48 family protein Cre09.g387726 AST1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 Aspartate aminotransferase Putative aspartate aminotransferase (EC 2.6.1.1); no organelle targeting sequence predicted by Target-P, but plastidic by homology, Found in the mitochondrial proteomic survey g9594.t1,Cre02.g122250.t1.1,Cre02.g122250.t1.2,AST1 PF00155 PTHR11879 KOG1411 2.6.1.1 K00813 GO:0006520,GO:0008483,GO:0009058,GO:0016769,GO:0030170 AT5G11520.1 ASP3,YLS4 aspartate aminotransferase 3 Cre03.g178150 RSP20,CAM1 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 11 Calmodulin, radial spoke protein Identical to CALM_CHLRE; contains 4 EF-hand, calcium binding motifs; Calmodulin mediates the control of a large number of enzymes by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatas g3687.t1,CAM1,RSP20 PF00036 PTHR23050:SF20,PTHR23050 KOG0027 - K02183 - AT5G21274.1 ACAM-6,CAM6 calmodulin 6 Cre10.g419450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g10383.t1 PF00069,PF00564 PTHR26392:SF155,PTHR26392 KOG0192 - - GO:0004672,GO:0005524,GO:0006468,GO:0005515 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre26.g756947 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g18296.t1,Cre84.g796450.t1.1 - - - - - - - - - Cre07.g348400 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - - - g8106.t1 - - - - - - - - - Cre03.g164200 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 10 - - g3366.t1 - - - - - - - - - Cre05.g248450 CAH5 - 0 1 1.0 nan 0 1 1.0 nan M n - 6 Mitochondrial carbonic anhydrase Mitochondrial carbonic anhydrase, also called CA2. Matches exons 5 and 6 of CRU41190 Chlamydomonas reinhardtii carbonic anhydrase precursor (beta-CA2). The inorganic carbon-concentrating mechanism has been reviewed by Spalding (2008) [PMID: 17597098] g5163.t1,Cre05.g248450.t1.1,CAH5 PF00484 PTHR11002,PTHR11002:SF1 KOG1578 4.2.1.1 K01673 GO:0004089,GO:0008270,GO:0015976 AT1G58180.2 ATBCA6,BCA6 beta carbonic anhydrase 6 Cre03.g212753 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g4483.t1,Cre19.g757050.t1.1,Cre19.g757050.t1.2 PF04305 PTHR21496 - - - - AT5G04520.1 - Protein of unknown function DUF455 Cre12.g514350 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12694.t1,Cre12.g514350.t1.1 - - - - - - - - - Cre12.g495850 HBD1 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g12138.t1,Cre12.g495850.t1.1,HBD1 PF00106 PTHR24322 KOG0725 - - GO:0008152,GO:0016491 AT1G24360.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre07.g313302 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g7252.t1 PF01193,PF01000 PTHR11800:SF13,PTHR11800 KOG1521 - - GO:0003899,GO:0006351,GO:0046983 AT1G60620.1 ATRPAC43,RPAC43 RNA polymerase I subunit 43 Cre03.g206593 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g4426.t1 PF01753 PTHR13244 - - - GO:0008270 AT5G65450.1 UBP17 ubiquitin-specific protease 17 Cre06.g309717 - 0 1 1.0 nan 0 1 1.0 nan C n - 3 - - g7166.t1 PF01722,PF02657 PTHR12735,PTHR12735:SF3 KOG2313 - - - AT4G26500.1 ATSUFE,CPSUFE,EMB1374,SUFE1 chloroplast sulfur E Cre03.g152350 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 13 - - g3101.t1 - - - - - - - - - Cre11.g467526 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g11456.t1,Cre18.g751350.t1.1 PF00583 - KOG4144 - - GO:0008080,GO:0008152 - - - Cre11.g467527 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 Cytochrome P450, CYP710 superfamily; C-22 desaturase Cytochrome P450, CYP710 superfamily, CYP710A family. Cytochrome P450 CYP710A encodes the sterol C-22 desaturase in Arabidopsis and tomato [PMID: 16531502]. CYP61 of fungi also encodes a C-22 desaturase, and these sequences probably share a common ancesto g11457.t1,Cre18.g751300.t1.1,Cre18.g751300.t1.2 PF00067 PTHR24286,PTHR24286:SF14 KOG0157 - K09832 GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT2G28860.1 CYP710A4 cytochrome P450, family 710, subfamily A, polypeptide 4 Cre11.g467525 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 14 - - g11455.t1,Cre18.g751450.t1.1 PF00646 PTHR16134 - - - GO:0005515 - - - Cre11.g467523 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g11451.t1 PF03372,PF00078 PTHR19446:SF105,PTHR19446 - - - GO:0003723,GO:0003964,GO:0006278 AT4G20520.1 - RNA binding;RNA-directed DNA polymerases Cre13.g602550 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 16 - - g14561.t1 - - - - - - - - - Cre14.g630150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g15176.t1 PF02176 PTHR10131,PTHR10131:SF52 - - - - - - - Cre11.g467528 CAV4 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 Voltage-gated Ca2+ channel, alpha subunit Calcium channel, 4-domain, voltage-dependent, alpha subunit; may exhibit altered ion selectivity as conserved P-loop loci differ from mammalian Ca2+ channels g11458.t3,Cre18.g751250.t3.1,CAV4, g11458.t1,Cre18.g751250.t1.1,CAV4, g11458.t2,Cre18.g751250.t2.1,CAV4 PF00520 PTHR10037:SF138,PTHR10037 - - K04841 GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G03560.1 ATCCH1,ATTPC1,FOU2,TPC1 two-pore channel 1 Cre16.g659600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 1 - - g15933.t1 PF03914 PTHR14428,PTHR14428:SF5 - - - - AT1G79150.1 - binding Cre06.g289950 HEL28,HEN2 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 DEAD/DEAH box helicase DEAD/DEAH box helicase. Putative homologue of Arabidopsis Hua Enhancer 2, HEN2, DExH box helicase. Previously annotated as HEN2 g6727.t1,HEL28,HEN2 PF00271,PF08148,PF00270 PTHR11752:SF2,PTHR11752 KOG0948 3.6.4.13 K12598 GO:0003676,GO:0004386,GO:0005524,GO:0016818,GO:0008026 AT2G06990.1 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein Cre06.g309450 CPZ - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g7160.t1,Cre06.g309450.t1.1,CPZ PF00246 PTHR11532:SF27,PTHR11532 KOG2649 - - GO:0004181,GO:0006508,GO:0008270 AT1G71696.2 SOL1 carboxypeptidase D, putative Cre03.g198850 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 7 - - g4352.t1,Cre03.g198850.t1.1 PF01789 - - - - GO:0005509,GO:0009523,GO:0009654,GO:0015979,GO:0019898 AT3G63540.1 - Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein Cre03.g198851 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 16 - - g4353.t1 - - - - - - - - - Cre24.g755947 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g18267.t1,Cre05.g231800.t1.1 PF05686 PTHR12203,PTHR12203:SF14 - - - - - - - Cre11.g482450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11977.t1,Cre11.g482450.t1.1 - - - - - - - - - Cre04.g222402 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 6 - - g4853.t1 PF01822 - - - - - - - - Cre02.g146100 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g2539.t1 - - - - - - - - - Cre03.g196450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g4069.t1,Cre03.g196450.t1.1 PF03126 PTHR13115 KOG2402 - - GO:0003677,GO:0005634,GO:0006352,GO:0016570 AT1G61040.1 VIP5 plus-3 domain-containing protein Cre09.g413132 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g10231.t1 - - - - - - - - - Cre08.g373300 MAPKKK1 - 0 1 1.0 nan 0 1 1.0 nan SP n - - Mitogen-Activated Protein Kinase Kinase Kinase Mitogen-Activated Protein Kinase Kinase Kinase 1 (MAP Kinase Kinase Kinase 1)(MEK Kinase 1) (MEKK1). First kinase in the canonical MAP Kinase pathway g8742.t1,MAPKKK1 PF02480,PF00069 PTHR23257:SF303,PTHR23257 KOG0192 - - GO:0016020,GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre16.g681750 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 4 - - g16469.t1, g16469.t2 PF00689,PF00702,PF00690,PF00122 PTHR24093:SF169,PTHR24093 KOG0204 - - GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT5G57110.1 ACA8,AT-ACA8 autoinhibited Ca2+ -ATPase, isoform 8 Cre13.g570600 CTR1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 4 CTR type copper ion transporter CTR type copper ion transporter. Characterized by Page et al. 2009 [PMID: 19318609]. g14035.t1,Cre13.g570600.t1.1 PF04145 PTHR12483:SF9,PTHR12483 KOG3386 - - GO:0005375,GO:0016021,GO:0035434 - - - Cre05.g239500 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 16 - - g5524.t1 - - - - - - - - - Cre17.g740350 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g17908.t1 - - - - - - - - - Cre16.g653850 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 - - g15810.t1 PF05207 PTHR21454,PTHR21454:SF3 KOG2923 - - - AT2G15910.2 - CSL zinc finger domain-containing protein Cre12.g503450 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 10 - - g12501.t1,Cre12.g503450.t1.1 - PTHR13271 - - - - AT3G55080.1 - SET domain-containing protein Cre03.g162450 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 - - g3330.t1 PF03092 PTHR24003:SF331,PTHR24003 - - - - AT2G32040.1 - Major facilitator superfamily protein Cre16.g664050 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 13 - - g16033.t1, g16033.t2,Cre16.g664050.t1.1 PF02893 PTHR23319 - - - - AT1G02120.1 VAD1 GRAM domain family protein Cre03.g176800 FPGS1,FPG1 - 0 1 1.0 nan 0 1 1.0 nan M n - - Folylpolyglutamate synthase Putative folylpolyglutamate synthase, folate biosynthesis. Previously annotated as FPGS1 g3653.t1,FPG1,FPGS1 PF08245 PTHR11136 - 6.3.2.17 K01930 GO:0004326,GO:0005524,GO:0009396,GO:0009058 AT5G41480.1 ATDFA,DFA,EMB9,GLA1 Folylpolyglutamate synthetase family protein Cre07.g322400 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g7449.t1 - - - - - - - - - Cre09.g395325 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g9806.t1,Cre02.g131750.t1.1,Cre02.g131750.t1.2 PF08576 - - - - - AT5G11760.1 - - Cre04.g217000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g4517.t1 - - - - - - - - - Cre02.g086550 CGL122 - 0 4 1.0 1.0 0 4 1.0 1.0 C Y - 1 - - g1606.t1 PF04055 - - - - GO:0003824,GO:0051536 AT1G60230.1 - Radical SAM superfamily protein Cre17.g731800 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 2 - - g17687.t1,Cre17.g731800.t1.1 PF07648 PTHR10913,PTHR10913:SF5 - - - - - - - Cre06.g286100 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 14 - - g6649.t1 - - - - - - - - - Cre02.g145452 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 11 - - g2559.t1,Cre02.g145400.t1.1 - - - - - - - - - Cre09.g390319 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g9665.t1,Cre02.g125650.t1.1 PF09324,PF01369 PTHR10663,PTHR10663:SF42 KOG0929 - - GO:0005086,GO:0005622,GO:0032012 AT3G60860.1 - SEC7-like guanine nucleotide exchange family protein Cre03.g173350 ANK22b,ANK22 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 4 Predicted protein with ankrin repeats Protein of unknown function with ankyrin repeats; two splice variants are expected, a less abundant splicing isoform (PMID: 12836870) and a shorter, most abundant splicing isoform (PMID: 12836870) g3575.t1,ANK22, g3575.t2,Cre03.g173350.t1.1,ANK22 PF00023 PTHR24198:SF302,PTHR24198 KOG4214 - - GO:0005515 AT4G35450.1 AFT,AKR2,AKR2A ankyrin repeat-containing protein 2 Cre14.g634100 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15288.t1 - - - - - - - - - Cre10.g455000 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11167.t1, g11167.t2,Cre10.g455000.t1.1 - PTHR11795:SF312,PTHR11795 - - - - - - - Cre12.g552300 CTL3 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n downregulated 7 C-type lectin C-type lectin, contains C-type lectin domain responsible for carbohydrate binding activity (PMID: 16336259); likely a C-type mannose receptor (KEGG: K06560) g13492.t1,Cre12.g552300.t1.1,CTL3 PF12499 - - - - - - - - Cre11.g468383 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 16 - - g11761.t1,Cre45.g788550.t1.1 - - - - - - AT4G00755.1 - F-box family protein Cre06.g282826 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g6577.t1 - - - - - - - - - Cre11.g479200 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g11897.t1 - - - - - - AT2G42700.2 - - Cre10.g438450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 13 - - g10800.t1 - - - - - - - - - Cre17.g742132 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 6 - - g17949.t1,Cre17.g742128.t1.2 - - - - - - - - - Cre02.g083450 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 15 - - g1536.t1 PF01494 PTHR13789:SF70,PTHR13789 - - - GO:0004497,GO:0055114 - - - Cre07.g347750 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 14 - - g8092.t1 - - - - - - - - - Cre05.g232003 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g5141.t1 - - - - - - - - - Cre17.g707250 MFT29 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 9 - - g17136.t1,Cre17.g707250.t1.1,MFT29 PF07690 - - - - GO:0016021,GO:0055085 - - - Cre17.g736000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g17804.t1, g17804.t2 - - - - - - - - - Cre16.g686700 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g16359.t1 PF03330 - - - - - AT5G39310.1 ATEXP24,ATEXPA24,ATHEXP ALPHA 1.19,EXP24,EXPA24 expansin A24 Cre12.g561101 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g13296.t1 PF03016,PF07974 PTHR11062 KOG1021 - - GO:0016020 AT1G27440.1 ATGUT1,GUT2,IRX10 Exostosin family protein Cre17.g710871 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g17214.t1,Cre17.g710871.t1.1 - - - - - - - - - Cre07.g346917 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g8073.t1 - - - - - - - - - Cre02.g097850 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g1990.t1 - - - - - - AT5G56930.1 emb1789 CCCH-type zinc finger family protein Cre06.g279150 TSD2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 - - g6490.t1,Cre06.g279150.t1.1,TSD2 PF00152,PF01336 PTHR22594,PTHR22594:SF10 KOG0556 6.1.1.12 K01876 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418,GO:0003676 AT4G31180.1 - Class II aminoacyl-tRNA and biotin synthetases superfamily protein Cre08.g364250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g8529.t1,Cre08.g364250.t1.1 PF09174 PTHR22504 KOG3104 - - - AT5G13240.1 - transcription regulators Cre03.g179050 - 0 1 1.0 nan 0 1 1.0 nan M n - 5 - - g3706.t1,Cre03.g179050.t1.1 - - - - - - - - - Cre02.g105300 ANK19,FAP231 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 Flagellar Associated Protein with ankyrin repeats Protein of unknown function with ankyrin repeats, flagella associated; partial sequence; found in the flagellar proteome as FAP231 [PMID: 15998802] g2159.t1,ANK19 PF00023 PTHR24198:SF302,PTHR24198 KOG4214 - - GO:0005515 AT3G04710.1 - ankyrin repeat family protein Cre04.g214850 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g4674.t1,Cre04.g214850.t1.1 - - - - - - - - - Cre04.g213800 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 13 - - g4702.t1 - PTHR10825,PTHR10825:SF5 - - - - AT5G44280.1 ATRING1A,RING1A RING 1A Cre10.g463968 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g11369.t1 - - - - - - - - - Cre07.g320250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 12 - - g7406.t1 PF09741 - - - - - AT1G59520.3 CW7 CW7 Cre06.g275300 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 5 - - g6173.t1,Cre06.g275300.t1.1 PF05670 PTHR13049 KOG3272 - - - AT5G11500.1 - - Cre17.g744897 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g18014.t1,Cre20.g759850.t1.1 - - - - - - - - - Cre12.g529800 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g13044.t1, g13044.t2 - PTHR24106 KOG1909 - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre16.g649000 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 17 - - g15705.t1 PF00069,PF07714 PTHR23257,PTHR23257:SF99 KOG1187 - - GO:0004672,GO:0005524,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre13.g605200 MMP29 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 14 - - g14597.t2,MMP29, g14597.t1,MMP29 PF05548 - - - - - - - - Cre14.g624800 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15052.t1,Cre14.g624800.t1.1 PF00339 PTHR11188 KOG3780 - - - - - - Cre07.g314300 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g7272.t1 PF07092 PTHR16132,PTHR16132:SF7 - - - - - - - Cre05.g234664 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g5383.t1,Cre24.g768750.t1.1,Cre24.g768750.t1.2 PF01256 PTHR12592 KOG3974 - - - AT5G19150.1 - pfkB-like carbohydrate kinase family protein Cre05.g234665 AP4B4 - 0 1 1.0 nan 0 1 1.0 nan M n - - Beta4-Adaptin Expressed protein. Beta4-Adaptin, clathrin adaptor complex large subunit, putative member of AP-4 complex g5384.t1,Cre24.g768700.t1.1,Cre24.g768700.t1.2,AP4B4 PF01602,PF09066 PTHR11134:SF4,PTHR11134 KOG1061 - - GO:0006886,GO:0016192,GO:0030117,GO:0030131 AT5G11490.1 - adaptin family protein Cre14.g623439 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g15026.t3,Cre14.g623500.t2.1, g15026.t1,Cre14.g623500.t1.3, g15026.t2,Cre14.g623500.t3.1 PF01470 PTHR23402,PTHR23402:SF1 - - - GO:0006508 AT1G56700.1 - Peptidase C15, pyroglutamyl peptidase I-like Cre16.g658926 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g15919.t1 - - - - - - - - - Cre05.g234660 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 13 - - g5379.t1,Cre24.g768950.t1.1,Cre24.g768950.t1.2 PF00097 - - - - - - - - Cre05.g234662 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 - - g5381.t1,Cre24.g768850.t1.1,Cre24.g768850.t1.2 - - - - - - - - - Cre05.g234663 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g5382.t1,Cre24.g768800.t1.1 PF02146 - KOG2682 - - GO:0006342,GO:0006355,GO:0006476,GO:0008270,GO:0016811,GO:0070403 AT5G09230.3 AtSRT2,SRT2 sirtuin 2 Cre14.g630907 APG5 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g15203.t1,APG5, g15203.t2,APG5 PF04106 PTHR13040 KOG2976 - K08339 GO:0005737,GO:0006914 AT5G17290.1 APG5,ATATG5,ATG5 autophagy protein Apg5 family Cre09.g402886 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g10030.t1,Cre02.g120400.t1.1,Cre02.g120400.t1.2 - - - - - - - - - Cre03.g191100 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g3955.t1,Cre03.g191100.t1.1 - - - - - - - - - Cre17.g737752 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g17847.t1 - - - - - - - - - Cre14.g627500 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g15116.t1,Cre14.g627500.t1.1 PF02463 PTHR18937 KOG3202 - - GO:0005524,GO:0005694 AT5G48600.2 ATCAP-C,ATSMC3,ATSMC4,SMC3 structural maintenance of chromosome 3 Cre16.g688700 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n downregulated 13 - - g16168.t1 PF01764 - - - - GO:0004806,GO:0006629 AT3G61680.1 - alpha/beta-Hydrolases superfamily protein Cre17.g734400 CUL3 - 0 1 1.0 nan 0 1 1.0 nan O n - - Ubiquitin ligase SCF complex subunit Cullin Ubiquitin ligase SCF complex subunit Cullin. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145]. g17756.t1,CUL3 PF00888,PF10557 PTHR11932:SF21,PTHR11932 KOG2166 - - GO:0006511,GO:0031461,GO:0031625 AT4G02570.1 ATCUL1,AXR6,CUL1 cullin 1 Cre12.g489400 PTB7 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - - Sodium/phosphate symporter Putative phosphate transporter, similar to yeast Pho89, Neurospora PHO4 probable Na+/Pi symporters; ~250 kb away from PTB1 on scaffold 11. Missing some conserved sequences compared to other PTB family members; may be due to transposon insertions. g12197.t1,Cre12.g489400.t1.1,PTB7 PF01384 PTHR11101:SF7,PTHR11101 KOG2493 - - GO:0005315,GO:0006817,GO:0016020 AT3G26570.2 ORF02,PHT2;1 phosphate transporter 2;1 Cre17.g717050 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 18 - - g17358.t1 PF01061,PF00005 PTHR19241,PTHR19241:SF23 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT5G06530.1 - ABC-2 type transporter family protein Cre08.g362150 FAP154 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Flagellar Associated Protein Flagellar Associated Protein with PAS sensory domain, found in the flagellar proteome [PMID: 15998802] g8482.t1,FAP154 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre05.g232500 FXL8 - 0 8 1.0 1.0 0 8 1.0 1.0 M n downregulated 17 FixL-like PAS domain protein Cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and g5124.t2,FXL8, g5124.t1,FXL8 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre16.g686789 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g16357.t1,Cre16.g686789.t1.1 - - - - - - - - - Cre02.g092600 CPX2 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Coproporphyrinogen III oxidase Coproporphyrinogen III oxidase, mitochondrial or chloroplast precursor; CPO2 [PMID: 15849308]; Predicted chloroplast transit peptide 1-32 g1736.t1,Cre02.g092600.t1.1,CPX2 PF01218 PTHR10755 KOG1518 - - GO:0004109,GO:0006779,GO:0055114 AT1G03475.1 ATCPO-I,HEMF1,LIN2 Coproporphyrinogen III oxidase Cre16.g663050 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g16008.t1 PF02263 PTHR10751 - - - GO:0003924,GO:0005525 AT2G38840.1 - Guanylate-binding family protein Cre07.g356450 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 14 - - g8287.t1 PF00211 PTHR24790,PTHR24790:SF7 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre03.g143987 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g2863.t1,Cre01.g056300.t1.1,Cre01.g056300.t1.2 PF00097 - - - - - - - - Cre03.g179941 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g3728.t1,Cre73.g795050.t1.1,Cre73.g795050.t1.2 - - - - - - - - - Cre09.g407110 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 16 - - g10093.t1 - PTHR12461:SF3,PTHR12461 - - - - AT5G19840.2 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre06.g278350 AGD1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 2 Arogenate/prephenate dehydrogenase Putative arogenate/prephenate dehydrogenase, similarity to putative arogenate dehydrogenase from rice (GenBank BAD53632); predicted plastidic by Target-P and by homology g6473.t1,AGD1 PF02153 PTHR14239 - - - GO:0004665,GO:0006571 AT1G15710.1 - prephenate dehydrogenase family protein Cre17.g726983 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 12 - - g17577.t1, g17577.t2 - - - - - - - - - Cre02.g083900 EXN5 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 1 - - g1545.t1,EXN5, g1545.t2,EXN5 PF01612,PF04073,PF01927 PTHR12124,PTHR12124:SF14 - - - GO:0003676,GO:0005622,GO:0006139,GO:0008408 AT1G56310.1 - Polynucleotidyl transferase, ribonuclease H-like superfamily protein Cre08.g386000 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g9082.t1, g9082.t2 PF00400,PF05641 - - - - GO:0003723 - - - Cre02.g075400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g1349.t1, g1349.t2 PF04749 PTHR15907,PTHR15907:SF13 - - - - AT5G35525.1 - PLAC8 family protein Cre16.g695800 - 0 14 1.0 1.0 0 14 1.0 1.0 C n - 16 - - g15553.t1 PF00686 - - - - GO:0003824,GO:0005975 - - - Cre13.g566800 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g13947.t2, g13947.t1,Cre13.g566800.t1.1 - - - - - - - - - Cre06.g294100 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g6809.t1 - - - - - - - - - Cre01.g053200 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 - - g1175.t1 PF06087 PTHR12415 - 3.1.4.- K10862 GO:0005634,GO:0006281,GO:0008081 AT5G15170.1 TDP1 tyrosyl-DNA phosphodiesterase-related Cre01.g024950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g573.t1,Cre01.g024950.t1.1 - PTHR12444 - - - - AT5G21080.1 - Uncharacterized protein Cre12.g488750 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 15 - - g12211.t1,Cre12.g488750.t1.1 - PTHR24023:SF398,PTHR24023 - - - - - - - Cre12.g488752 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g12212.t1 - PTHR11017 - - - - - - - Cre14.g616250 CPL9,PCD4 - 0 1 1.0 nan 0 1 1.0 nan C n - - Polyketide cyclase/dehydrase Polyketide cyclase/dehydrase. Conserved expressed protein of unknown function; some similarity to predicted proteins of in plants and cyanobacteria. COG5637. Previously annotated as CPL9 (which was a predicted membrane protein) g14846.t1,Cre14.g616250.t1.1,PCD4 PF03364 - - - - - AT4G01883.1 - Polyketide cyclase / dehydrase and lipid transport protein Cre12.g531000 AMT8 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - Ammonium transporter Belongs to AMT1 family (Amt1;8); corresponds to AY548754, mRNA complete cds (PMID: 15821986). Previously annotated as AMT1H g13070.t2,AMT8, g13070.t1,Cre12.g531000.t1.1,AMT8 PF00909 PTHR11730:SF13,PTHR11730 KOG0682 - - GO:0008519,GO:0016020,GO:0072488 AT4G13510.1 AMT1;1,ATAMT1,ATAMT1;1 ammonium transporter 1;1 Cre17.g723000 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g17490.t1 - - - - - - - - - Cre12.g524000 GTR7,SUC1 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - - Sucrose-phosphate synthase Sucrose-phosphate synthase (UDP-glucose-fructose-phosphate glucosyltransferase). The Chlamydomonas sucrose biosynthesis pathway, including this gene, was used in an example of metabolic network analysis by Nikoloski et al. 2008 [PMID: 18682254]. Previous g12903.t1,Cre12.g524000.t1.1,GTR7,SUC1 PF00534 PTHR12526,PTHR12526:SF28 - 2.4.1.14 K00696 GO:0009058 AT1G04920.1 ATSPS3F,SPS3F sucrose phosphate synthase 3F Cre08.g360001 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g8431.t1 - - - - - - - - - Cre11.g482150 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 4 - - g11970.t1,Cre11.g482150.t1.1 - - - - - - - - - Cre07.g329250 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g7658.t1 PF07683,PF02492 PTHR22904,PTHR22904:SF163 - - - - AT4G12400.2 - stress-inducible protein, putative Cre13.g583000 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 15 - - g14313.t2, g14313.t1 - - - - - - - - - Cre17.g728600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g17610.t1,Cre17.g728600.t1.1 - - - - - - - - - Cre09.g409426 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g10146.t1 - - - - - - - - - Cre02.g074758 CYG8 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 3 - - g1335.t1,Cre02.g074750.t2.1,CYG8, g1335.t2,Cre02.g074750.t1.3,CYG8 PF00211 PTHR11920:SF147,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre17.g714900 CGL11 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 7 Predicted protein Conserved expressed protein of unknown function; contains DUF1499; related to Arabidopsis thylakoid lumenal 17.9 kDa protein g17307.t1,Cre17.g714900.t1.1 - - - - - - AT4G24930.1 - thylakoid lumenal 17.9 kDa protein, chloroplast Cre01.g003463 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g80.t1 PF01624,PF00488,PF05192,PF05188 PTHR11361:SF35,PTHR11361 KOG0219 - K08735 GO:0005524,GO:0006298,GO:0030983 AT3G18524.1 ATMSH2,MSH2 MUTS homolog 2 Cre03.g149050 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 14 - - g3031.t1 PF03188 PTHR23244,PTHR23244:SF104 - - - GO:0016021 AT5G47530.1 - Auxin-responsive family protein Cre06.g267550 BBS5 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Bardet-Biedl syndrome-5 associated protein Similar to Bardet-Biedl syndrome 5 g6004.t1,Cre06.g267550.t1.1,BBS5 PF07289 PTHR21351 - - - - - - - Cre07.g355150 ZRT5 - 0 1 1.0 nan 0 1 1.0 nan SP n - 5 Zinc-nutrition responsive transporter Related to plant homologs; physically linked to ZIP1; appears as CrZIP4 in PMID: 15710683; PMID: 16766055. Cis-acting regulatory elements were characterized by Fei et al. 2009 [PMID: 19351705]. g8259.t1 PF02535 PTHR11040 KOG1558 - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 AT1G05300.1 ZIP5 zinc transporter 5 precursor Cre02.g079150 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g1445.t1 PF03031 PTHR12083,PTHR12083:SF5 - - - GO:0005515 AT5G01310.1 APTX APRATAXIN-like Cre02.g118750 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 12 - - g2464.t1 - - - - - - - - - Cre13.g575333 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g14140.t1,Cre13.g575350.t1.3 PF02301 PTHR11842:SF10,PTHR11842 KOG3186 - K13728 GO:0007067 AT1G16590.1 ATREV7,REV7 DNA-binding HORMA family protein Cre12.g487000 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 8 - - g12250.t1 - - - - - - - - - Cre17.g745447 MAPK4 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Mitogen-Activated Protein Kinase Hypothetical Mitogen-Activated Protein Kinase Homolog 4 g18025.t1,Cre20.g759500.t1.1,MAPK4 PF00069 PTHR24055,PTHR24055:SF69 KOG0660 - - GO:0004672,GO:0005524,GO:0006468 AT1G73670.1 ATMPK15,MPK15 MAP kinase 15 Cre12.g483720 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g12007.t1,Cre12.g483720.t1.1 - - - - - - AT4G20010.1 OSB2,PTAC9 plastid transcriptionally active 9 Cre12.g529200 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g13030.t1 - PTHR13491 - - - - AT5G49400.1 - zinc knuckle (CCHC-type) family protein Cre05.g245550 PIK1 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 8 Phosphatidylinositol 4-kinase Phosphatidylinositol 4-kinase (PI4K) g5222.t1,PIK1 PF00454,PF00613 PTHR10048,PTHR10048:SF15 - 2.7.1.67 K00888 GO:0004428,GO:0046854,GO:0048015,GO:0016773 AT1G49340.1 ATPI4K ALPHA Phosphatidylinositol 3- and 4-kinase family protein Cre09.g395658 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 15 - - g9815.t1,Cre02.g132200.t1.1 PF00069 PTHR24055,PTHR24055:SF166 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT1G67580.1 - Protein kinase superfamily protein Cre17.g744797 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g18012.t1,Cre20.g759950.t1.1 PF05623 - - - - - AT1G73210.2 - Protein of unknown function (DUF789) Cre03.g200500 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g4317.t1 - - - - - - - - - Cre07.g358050 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 16 - - g8326.t1 PF01477 PTHR10877:SF43,PTHR10877 KOG3544 - - GO:0005515 - - - Cre13.g582350 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g14299.t1 PF00899 PTHR10953,PTHR10953:SF9 KOG2336 - K12164 GO:0003824 AT1G05350.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre03.g151450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3082.t1,Cre03.g151450.t1.1 - - - - - - - - - Cre13.g590400 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g14478.t1 PF04969,PF00041 PTHR12356,PTHR12356:SF10 - - - GO:0005515 AT4G27890.1 - HSP20-like chaperones superfamily protein Cre17.g727201 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g17581.t1 - - - - - - - - - Cre01.g041800 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 14 - - g937.t1, g937.t2,Cre01.g041800.t1.1 PF00069 PTHR26263,PTHR26263:SF9 - - - GO:0004672,GO:0005524,GO:0006468 AT5G51800.1 - Protein kinase superfamily protein Cre08.g379000 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g8920.t1,Cre08.g379000.t1.1 - - - - - - - - - Cre10.g442450 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g10885.t1,Cre10.g442450.t1.1 PF00097 - - - - - AT2G47560.1 - RING/U-box superfamily protein Cre08.g359000 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g8409.t2, g8409.t1,Cre08.g359000.t1.1 - PTHR24412:SF248,PTHR24412 - - - - - - - Cre10.g466050 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g11422.t2, g11422.t1,Cre10.g466050.t1.1 - - - - - - AT5G05250.1 - - Cre03.g167300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g3434.t1,Cre03.g167300.t1.1 - - - - - - - - - Cre03.g162150 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g3323.t1 - - - - - - - - - Cre01.g051875 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g1150.t1,Cre01.g051885.t1.2 - - - - - - - - - Cre14.g617826 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g14885.t1 PF02466 PTHR14110 - - - GO:0005743,GO:0008565,GO:0015031 - - - Cre13.g604750 CGL94 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y upregulated 3 - - g14588.t1,Cre13.g604750.t1.1 PF00097 PTHR22764,PTHR22764:SF20 - - - - AT5G12310.1 - RING/U-box superfamily protein Cre17.g716150 SUMO90,SUM4 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g17336.t1,SUM4,SUMO90 PF11976,PF03171 PTHR10562 KOG1769 - - GO:0016491 AT5G55160.1 ATSUMO2,SUM2,SUMO 2,SUMO2 small ubiquitin-like modifier 2 Cre10.g443850 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 9 - - g10912.t1 PF00675,PF05193 PTHR11851,PTHR11851:SF60 KOG0960 - - GO:0004222,GO:0006508,GO:0008270 - - - Cre02.g119800 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g2488.t1 PF00498 - - - - GO:0005515 - - - Cre13.g580850 PRPL22 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g14267.t1,PRPL22, g14267.t2,Cre13.g580850.t1.1,PRPL22 PF00237 PTHR13501 - - K02890 GO:0003735,GO:0006412,GO:0015934,GO:0005622,GO:0005840 ATCG00810.1 - ribosomal protein L22 Cre13.g587800 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g14419.t1 - - - - - - AT4G38760.1 - Protein of unknown function (DUF3414) Cre17.g717200 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 12 - - g17361.t1, g17361.t2 PF01026 PTHR10060,PTHR10060:SF3 KOG3020 3.1.21.- K03424 GO:0016888 AT5G17570.1 - TatD related DNase Cre07.g354600 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 - - g8249.t1 - - - - - - - - - Cre02.g116800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g2418.t1 - PTHR12381:SF13,PTHR12381 - - - - - - - Cre10.g425400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g10514.t1,Cre10.g425400.t1.1 - PTHR13244 - - - - - - - Cre05.g247150 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 15 - - g5189.t1,Cre05.g247150.t1.1 - - - - - - - - - Cre03.g203345 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 10 - - g4396.t1,Cre19.g753250.t1.1,Cre19.g753250.t1.2 - - - - - - - - - Cre09.g398141 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g9883.t1,Cre02.g135300.t1.1,Cre02.g135300.t1.2 PF00628,PF00665,PF09337,PF00078 PTHR10178,PTHR10178:SF14 - - - GO:0005515,GO:0003677,GO:0015074,GO:0003723,GO:0003964,GO:0006278 AT3G01460.1 ATMBD9,MBD9 methyl-CPG-binding domain 9 Cre09.g390430 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g9668.t1,Cre02.g125800.t1.1 PF00498 PTHR23308:SF8,PTHR23308 KOG1882 - K13108 GO:0005515 AT3G20550.1 DDL SMAD/FHA domain-containing protein Cre16.g649250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 4 - - g15710.t1 - - - - - - AT5G65840.1 - Thioredoxin superfamily protein Cre17.g720850 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g17445.t1,Cre17.g720850.t1.1 - - - - - - - - - Cre06.g278161 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g6304.t1,Cre13.g596400.t1.1 PF05548 - - - - - - - - Cre06.g278165 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 17 - - g6308.t1,Cre13.g596600.t1.1,Cre13.g596600.t1.2 PF05548 - - - - - - - - Cre06.g278166 PRL4 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Predicted extracellular protein Similar to pathogenesis-related protein 1, extracellular g6309.t1,Cre13.g596650.t1.1,PRL4 PF00188 PTHR10334 KOG3017 - - - AT3G09590.1 - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Cre06.g278167 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 5 - - g6310.t1,Cre13.g596700.t1.1 - - - - - - - - - Cre06.g293900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 5 - - g6805.t1 PF00789 PTHR23333,PTHR23333:SF4 - - - GO:0005515 - - - Cre03.g194517 - 0 1 1.0 nan 0 1 1.0 nan O n - 3 - - g4026.t1 - PTHR11439,PTHR11439:SF127 - - - - - - - Cre17.g721450 NSS4 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 3 - - g17455.t1,NSS4 PF00474 PTHR11819,PTHR11819:SF89 - - - GO:0005215,GO:0006810,GO:0016020,GO:0055085 - - - Cre12.g523340 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g12889.t2, g12889.t1 - - - - - - - - - Cre10.g465500 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g11406.t1, g11406.t2 PF00561 PTHR10992,PTHR10992:SF267, PTHR10992 - - - - - - - Cre17.g730516 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g17653.t1 - - - - - - - - - Cre03.g164650 MOT1 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 Putative methyltransferase Putative methyltransferase. Identified by comparative genomics as being present only in organisms having motile (MOT) cilia. ChromoDB SDG3418 g3375.t1,Cre03.g164650.t1.1,MOT1 PF00856 PTHR13271 KOG1337 - K05302 GO:0005515 AT3G56570.1 - SET domain-containing protein Cre16.g671713 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 - - g16696.t1,Cre01.g064881.t1.1,Cre01.g064881.t1.2 - - - - - - - - - Cre02.g081176 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g1485.t1, g1485.t2,Cre02.g081176.t1.1 PF00588 PTHR12029,PTHR12029:SF27 - - - GO:0003723,GO:0006396,GO:0008173 - - - Cre12.g539000 ECT1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 CDP-Ethanolamine synthase CDP-Ethanolamine synthase involved in Kennedy pathway for phosphatidylethanolamine biosynthesis; regulatory enzyme in the CDP-ethanolamine pathway of phosphatidylethanolamine (PE) biosynthesis [PMID: 15147238]; CTP:ethanolamine cytidylyltransferase g13251.t1,Cre12.g539000.t1.1 PF01467 PTHR10739,PTHR10739:SF14 KOG2803 2.7.7.14 K00967 GO:0009058,GO:0016779 AT2G38670.1 PECT1 phosphorylethanolamine cytidylyltransferase 1 Cre15.g638954 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g15433.t1, g15433.t2 PF08373 - - - - - - - - Cre15.g638956 OPR84,RAP19,CLR11 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g15435.t1,Cre15.g638800.t1.3,CLR11,RAP19 PF08373 - - - - - - - - Cre14.g612950 CYG17 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 18 Adenylate/guanylate cyclase Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g14769.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre13.g573000 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 1 - - g14090.t1,Cre13.g573000.t1.1 PF00856 PTHR13271 - - - GO:0005515 AT2G18850.2 - SET domain-containing protein Cre03.g181150 DLL1,ROC106,FLA14,RSP22,LC8 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 11 Dynein arm light chain 8, LC8 Dynein arm light chain 8, LC8 [PMID: 7744782; PMID: 9585416]; fla14 and pf5 are mutants at this locus [PMID: 19696030]. This dynein is shared by inner and outer arms and found in the cytoplasm. Matsuo et al. 2008 [PMID: 18334618] reported that the roc10 g3754.t1,FLA14,LC8,ROC106,RSP22 PF01221 PTHR11886,PTHR11886:SF21 KOG3430 - K10418 GO:0005875,GO:0007017 AT4G15930.1 - Dynein light chain type 1 family protein Cre17.g712350 CPLD6 - 0 1 1.0 nan 0 1 1.0 nan SP n - - Metal-dependent CAAX amino terminal protease-like protein Conserved protein related to metal-dependent CAAX amino terminal protease family. Most similar to abortive infection protein of Medicago truncatula - predicted metal-dependent membrane protease - COG1266, pfam02517, Abi, CAAX amino terminal protease famil g17250.t1 PF02517 - - - K07052 GO:0016020 AT5G60750.1 - CAAX amino terminal protease family protein Cre07.g356600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g8290.t1,Cre07.g356600.t1.1 PF08007 PTHR13096 - - - - - - - Cre06.g268850 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 16 - - g6031.t1, g6031.t2 PF00069 PTHR23257,PTHR23257:SF99 - - - GO:0004672,GO:0005524,GO:0006468 AT5G16590.1 LRR1 Leucine-rich repeat protein kinase family protein Cre03.g179550 TF2H2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Transcription factor TFIIH, 44 kDa subunit Transcription factor TFIIH, 44 kDasubunit; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH subunit g3716.t1,TF2H2 PF07975,PF04056 PTHR12695 KOG2807 - K03142 GO:0005634,GO:0006281,GO:0006355,GO:0008270 AT1G05055.1 ATGTF2H2,GTF2H2 general transcription factor II H2 Cre03.g177711 - 0 2 1.0 1.0 0 2 1.0 1.0 M Y - - - - g3675.t1 - - - - - - - - - Cre16.g677382 - 0 10 1.0 1.0 0 10 1.0 1.0 C n upregulated 18 - - g16135.t1,Cre01.g063750.t1.1,Cre01.g063750.t1.2, g16135.t2,Cre01.g063750.t2.1 PF00249 PTHR10641 - - K09422 - AT5G67300.1 ATMYB44,ATMYBR1,MYB44,MYBR1 myb domain protein r1 Cre16.g656350 - 0 11 1.0 1.0 0 11 1.0 1.0 O n downregulated 15 - - g15864.t1 - - KOG2897 - - - - - - Cre12.g506000 DIC2,ODA6 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Flagellar outer dynein arm intermediate chain 2 Flagellar outer dynein arm intermediate chain 2, IC2, ODA-IC2, IC69, IC70. Previously annotated as ODA2 g12447.t1,Cre12.g506000.t1.1,ODA6 PF00400 PTHR12442,PTHR12442:SF7 KOG1587 - K11143 - - - - Cre17.g699550 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 15 - - g16965.t1 - - - - - - - - - Cre03.g169300 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 10 - - g3485.t2,Cre03.g169300.t1.1, g3485.t1 PF01061,PF00005 PTHR19241,PTHR19241:SF92 - - - GO:0016020,GO:0005524,GO:0016887 AT2G01320.3 - ABC-2 type transporter family protein Cre02.g115050 RSE3,RSEP3 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 9 Intramembrane metalloprotease Intramembrane metalloprotease related to site-2 protease; contains M50 domain, with HExxH motif embedded in transmembrane helix; homologous to bacterial RseP/YaeL/PsoIVFB involved in transmembrane signaling. Previously annotated as RSEP3 g2377.t1,Cre02.g115050.t1.1,RSE3 PF02163 - - - - GO:0004222,GO:0006508 - - - Cre04.g217933 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g4564.t1,Cre03.g210000.t1.1,Cre03.g210000.t1.2 - - - - - - - - - Cre09.g392171 - 0 1 1.0 nan 0 1 1.0 nan SP n - 9 - - g9717.t1,Cre02.g127800.t1.1,Cre02.g127800.t1.2 - - - - - - AT2G03370.1 - Glycosyltransferase family 61 protein Cre03.g149800 TOG1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 Microtubule associated protein Microtubule associated protein also known as MOR1 and XMAP215/Dis1 g3047.t1,TOG1 - PTHR12609 KOG1820 - - - AT2G35630.1 GEM1,MOR1 ARM repeat superfamily protein Cre07.g337300 DYRK2,DSK2 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 9 Dual-Specificity Tyrosine Regulated Protein Kinase Dual-Specificity Tyrosine-Phosphorylated Protein Kinase 2. Previously annotated as DYRK2 g7848.t1,DSK2,DYRK2 PF00069 PTHR24058,PTHR24058:SF21 KOG0671 - - GO:0004672,GO:0005524,GO:0006468 AT1G73460.1 - Protein kinase superfamily protein Cre02.g105950 FAP174 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g2172.t1,Cre02.g105950.t1.1 - PTHR13168 - - - - AT2G14045.1 - - Cre10.g419650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated - - - g10387.t1,Cre10.g419650.t1.1 - - - - - - - - - Cre12.g494300 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g12062.t1,Cre12.g494300.t1.1 - - - - - - - - - Cre06.g309300 RRM7 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g7157.t1,Cre06.g309300.t1.1,RRM7 PF00398 PTHR11727,PTHR11727:SF8 KOG0820 - - GO:0000154,GO:0000179,GO:0008649 AT1G01860.1 PFC1 Ribosomal RNA adenine dimethylase family protein Cre10.g423800 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 10 - - g10481.t1 PF08785,PF02735 PTHR12604 - - - GO:0016817,GO:0003677,GO:0004003,GO:0006303 AT1G48050.1 ATKU80,KU80 Ku80 family protein Cre12.g527050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g12985.t1,Cre12.g527050.t1.1 PF03765,PF00650 PTHR23324,PTHR23324:SF5 KOG1471 - - - AT2G21540.1 ATSFH3,SFH3 SEC14-like 3 Cre02.g144950 KCN4 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 Voltage-gated K+ channel Voltage-dependent 1-domain potassium channel (Shaker-like), alpha subunit; P-loop contains conserved motif for K+ selectivity, cyclic nucleotide binding domain at C-terminus g2570.t1,KCN4 PF07885,PF00027 PTHR24567:SF22,PTHR24567 KOG0498 - - - AT2G26650.1 AKT1,ATAKT1,KT1 K+ transporter 1 Cre09.g416400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g10306.t1 PF00069 PTHR23257:SF352,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT4G24480.1 - Protein kinase superfamily protein Cre15.g637249 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 15 - - g15369.t1 - - - - - - - - - Cre07.g338300 FBB14 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - Putative flagellar/basal body protein Conserved protein found in ciliated organisms, with unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation g7870.t1,FBB14 PF00041 PTHR19900,PTHR19900:SF3 - - - GO:0005515 - - - Cre11.g482300 MOT17 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g11974.t1,Cre11.g482300.t1.1,MOT17 PF00612 PTHR22706 - - - GO:0005515 AT4G28710.1 ATXIH,XIH Myosin family protein with Dil domain Cre14.g614500 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g14806.t1 PF00651 PTHR24412:SF135,PTHR24412 - - - GO:0005515 AT3G06190.1 ATBPM2,BPM2 BTB-POZ and MATH domain 2 Cre08.g362450 AMYA2,AMA2 - 0 1 1.0 nan 0 1 1.0 nan C Y - 10 Alpha-amylase Alpha-amylase. Previously annotated as AMYA2 g8488.t1,Cre08.g362450.t1.1,AMA2 PF07821,PF00128 PTHR10357:SF9,PTHR10357 KOG0471 - - GO:0004556,GO:0005509,GO:0005975,GO:0003824,GO:0043169 AT1G69830.1 AMY3,ATAMY3 alpha-amylase-like 3 Cre06.g251300 SMP6B - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 U6 snRNA-associated Sm-like small nuclear riboprotein LSm4 U6 snRNA-associated Sm-like small nuclear riboprotein LSm4. LSm4 binds specifically to the 3\'-terminal U-tract of U6 snRNA. Previously annotated as SMP6B g5628.t1,Cre06.g251300.t1.1,SMP6B PF01423 PTHR23338 KOG3293 - K12623 - AT5G27720.1 emb1644 Small nuclear ribonucleoprotein family protein Cre14.g612226 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14754.t1 - - - - - - - - - Cre46.g761047 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g18399.t1 - - - - - - - - - Cre12.g533950 COT1 - 0 1 1.0 nan 0 1 1.0 nan M n - 2 Cobalt transport protein - g13133.t1,COT1 PF02361 - - - - GO:0006824,GO:0009236,GO:0015087 AT3G21580.1 - cobalt ion transmembrane transporters Cre08.g369200 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g8651.t1 - - - - - - - - - Cre10.g421400 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g10428.t1,Cre10.g421400.t1.1 PF01753 - - - - GO:0008270 AT1G17110.2 UBP15 ubiquitin-specific protease 15 Cre17.g727050 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g17578.t1 - - - - - - - - - Cre08.g374400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g8821.t2, g8821.t1 PF00400 PTHR19920 KOG0645 - - - AT2G26060.1 emb1345 Transducin/WD40 repeat-like superfamily protein Cre06.g250650 DRP4A,EZY8 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 14 Dynamin-related GTPase Similar to DRP4 (MX-like) class of Dynamin-like GTPases. Previously annotated as DRP4A. Also named EZY8, an early zygote expressed protein [PMID: 18487630] g5614.t1,Cre06.g250650.t1.1,EZY8 PF01031,PF00350 PTHR11566:SF21,PTHR11566 - - - GO:0005525,GO:0003924 AT2G14120.3 DRP3B dynamin related protein Cre03.g173700 KIL14 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g3582.t1,KIL14 PF00225 PTHR24115 KOG0242 - - GO:0003777,GO:0005524,GO:0007018 AT4G39050.1 - Kinesin motor family protein Cre12.g507750 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 14 - - g12403.t1, g12403.t2, g12403.t3 PF00023,PF07714,PF00069, PF00023,PF00069,PF07714, PF00023,PF00069 PTHR23257:SF89,PTHR23257 KOG0192 - - GO:0005515,GO:0004672,GO:0005524,GO:0006468, GO:0005515,GO:0004672,GO:0006468,GO:0005524 AT3G58760.1 - Integrin-linked protein kinase family Cre12.g532600 CGL44 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 13 RabGAP/TBC protein Green-lineage conserved protein. Contains Rab GTPase activating domain. May have glucan 1,4-alpha-glucosidase activity g13104.t1 PF00566 PTHR22957,PTHR22957:SF130 - - - GO:0005097,GO:0005622,GO:0032313 AT2G43490.1 - Ypt/Rab-GAP domain of gyp1p superfamily protein Cre08.g359950 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g8430.t1,Cre08.g359950.t1.1 - - - - - - - - - Cre10.g418300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 - - g10357.t1,Cre10.g418300.t1.1 PF03407 - - - - - AT1G14590.1 - Nucleotide-diphospho-sugar transferase family protein Cre09.g394436 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g9782.t1,Cre02.g130650.t1.1,Cre02.g130650.t1.2 PF03030 - - 3.6.1.1 K01507 GO:0004427,GO:0009678,GO:0015992,GO:0016020 AT1G15690.1 ATAVP3,AtVHP1;1,AVP-3,AVP1 Inorganic H pyrophosphatase family protein Cre03.g145247 TEF11 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 10 S-isoprenylcysteine O-methyltransferase S-isoprenylcysteine O-methyltransferase related, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018] g2926.t1,Cre01.g058700.t1.1,Cre01.g058700.t1.2,TEF11 PF04140 PTHR12714 KOG2628 - - GO:0004671,GO:0006481,GO:0016021 AT5G08335.1 ATICMTB,ATSTE14B,ICMTB Isoprenylcysteine carboxyl methyltransferase (ICMT) family Cre03.g162300 SDR7 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g3326.t1,Cre03.g162300.t1.1,SDR7 PF00106 PTHR24316,PTHR24316:SF144 KOG1208 - - GO:0008152,GO:0016491 AT4G23430.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre17.g703400 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 18 - - g17053.t1 - - - - - - - - - Cre13.g582290 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14298.t1 - - - - - - - - - Cre17.g708450 MMP33 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 12 - - g17164.t1,MMP33 PF05548 - - - - - - - - Cre04.g212500 CGL42 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 Predicted protein Conserved expressed protein of unknown function g4728.t1,Cre04.g212500.t1.1 PF09353 - - - - - AT5G48790.1 - Domain of unknown function (DUF1995) Cre16.g652300 CMA2,TTL13 - 0 1 1.0 nan 0 1 1.0 nan O n - - Putative tubulin tyrosine ligase Protein with putative tubulin tyrosine ligase activity and transmembrane domains. Previously annotated as CMA2 g15777.t1,CMA2,TTL13 - - - - - - - - - Cre05.g241629 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g5324.t1 - - - - - - - - - Cre03.g192000 SEC13L - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 COP-II coat subunit, nucleoporin Hypothetical Conserved Protein. Component of COP-II vesicle coat complex involved in ER-to-Golgi transport. Part of Sec13/31 sub-complex; also found associated with nuclear pore in other organisms. g3974.t1,Cre03.g192000.t1.1 PF00400 PTHR11024 KOG2445 - - - AT1G64350.1 SEH1H Transducin/WD40 repeat-like superfamily protein Cre11.g467768 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g11698.t1,Cre22.g763350.t1.1 PF08007 PTHR12461:SF3,PTHR12461 KOG2132 - - - AT3G20810.2 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre11.g467760 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 12 - - g11690.t1, g11690.t2 PF10604 - - - - - - - - Cre11.g467761 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 17 - - g11691.t1,Cre22.g763650.t1.1 - - - - - - - - - Cre11.g467765 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 - - g11695.t1 - - - - - - - - - Cre11.g467766 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - - - - g11696.t1,Cre22.g763450.t1.1,Cre22.g763450.t1.2 PF01139 PTHR11118 KOG3833 - - - - - - Cre11.g467767 NUO13 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 NADH:ubiquinone oxidoreductase 18 kDa subunit NADH:ubiquinone oxidoreductase (Complex I) subunit, homolog to bovine B17.2. gi|34334022|gb|AAQ64638.1| [PMID: 15710684; PMID: 15450959] g11697.t1,Cre22.g763400.t1.1,Cre22.g763400.t1.2,NUO13 PF05071 PTHR12910 KOG3382 1.6.5.3,1.6.99.3 K11352 GO:0008137,GO:0009055,GO:0016020 AT3G03100.1 - NADH:ubiquinone oxidoreductase, 17.2kDa subunit Cre11.g480300 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 11 - - g11924.t1 - - KOG0978 - - - - - - Cre14.g631400 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 18 - - g15217.t1 - - - - - - - - - Cre16.g674152 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 10 - - g16639.t1 - - - - - - - - - Cre08.g364600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g8536.t1,Cre08.g364600.t1.1 - - - - - - - - - Cre02.g089700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g1675.t1,Cre02.g089700.t1.1 - - - - - - - - - Cre08.g375751 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g8852.t1 - - - - - - - - - Cre12.g520050 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g12814.t1,Cre12.g520050.t1.1 - - - - - - - - - Cre06.g301050 ARL13 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 ARF-like GTPase Expressed Protein. ARF-like 13, a member of the ARF/Sar1 family of Ras-like GTPases. Conserved only in organisms with flagella (human orthologs - ARL13a and ARL13b), C. elegans ortholog specifically expressed in flagellated cells, hence a function in the g6965.t1,Cre06.g301050.t1.1,ARL13 PF00025 PTHR11711,PTHR11711:SF11 KOG0074 - K07962 GO:0005525 AT5G52210.1 ATARLB1,ATGB1,GB1 GTP-binding protein 1 Cre06.g300900 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 - - g6961.t1 PF07817 PTHR12960 KOG2412 - - GO:0005643,GO:0016973 AT1G13120.1 emb1745 embryo defective 1745 Cre13.g604850 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g14590.t1 - - - - - - AT4G32960.1 - - Cre07.g349950 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g8141.t1 PF02969,PF07571 PTHR10221 KOG2549 - K03131 GO:0005634,GO:0006352,GO:0016986,GO:0003702,GO:0051090 AT1G04950.1 ATTAF6,TAF6,TAFII59 TATA BOX ASSOCIATED FACTOR II 59 Cre05.g233800 TSG1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 - - g5097.t1,Cre05.g233800.t1.1,TSG1 PF00458,PF03129,PF00587 PTHR10745,PTHR10745:SF0 KOG2298 6.1.1.14 K01880 GO:0004812,GO:0005524,GO:0006418,GO:0006412,GO:0000166,GO:0004820,GO:0005737,GO:0006426 AT1G29880.1 - glycyl-tRNA synthetase / glycine--tRNA ligase Cre14.g618776 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 - - g14909.t1 - - - - - - - - - Cre07.g318400 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g7360.t1 - - - - - - - - - Cre16.g680600 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 - - g16496.t1,Cre16.g680600.t1.1 - - - - - - - - - Cre03.g161450 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3309.t1,Cre03.g161450.t1.1 - - - - - - - - - Cre12.g503850 ARLP2,ARL12 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 7 - - g12492.t1,ARL12,ARLP2 PF00025 PTHR11711 KOG0070 - - GO:0005525 AT5G14670.1 ARFA1B,ATARFA1B ADP-ribosylation factor A1B Cre16.g687050 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g16351.t1 - - - - - - - - - Cre02.g090650 SEC20 - 0 1 1.0 nan 0 1 1.0 nan O Y - 7 Endoplasmic reticulum Qb-SNARE protein, Sec20-family (Qb.I) Endoplasmic reticulum Qb-SNARE protein, Sec20-family (Qb.I). Conserved Protein. Class Qb.I SNARE, involved in Golgi-to-ER trafficking (PMID: 17596510). Previously annotated as SEC20 g1694.t1 PF03908 PTHR12825 - - - - AT3G24315.1 AtSec20 Sec20 family protein Cre07.g320093 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 12 - - g7402.t1,Cre07.g320093.t1.1 - - - - - - - - - Cre13.g605368 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g14601.t1 - - - - - - - - - Cre02.g144250 CYP769A1,CYP13 - 0 1 1.0 nan 0 1 1.0 nan SP n - 9 Cytochrome P450, CYP4 superfamily Cytochrome P450, CYP4 superfamily. Previously annotated as CYP769A1 g2588.t1,CYP13 PF00067 PTHR24305 KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT3G14640.1 CYP72A10 cytochrome P450, family 72, subfamily A, polypeptide 10 Cre03.g146267 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 18 - - g2978.t2,Cre01.g061150.t2.1, g2978.t1,Cre01.g061150.t1.1,Cre01.g061150.t1.2 - PTHR14493 KOG1595 - - - AT2G41900.1, AT5G12850.1 - CCCH-type zinc finger protein with ARM repeat domain Cre05.g236350 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5434.t1 - - - - - - - - - Cre03.g204150 FAP167,IFT80 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Intraflagellar transport protein 80 - g4233.t1,Cre03.g204150.t1.1,FAP167 PF00400 PTHR24098 KOG1524 - - - AT5G67320.1 HOS15 WD-40 repeat family protein Cre12.g518950 PGM13 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g12794.t1,Cre12.g518950.t1.1,PGM13 PF00300 PTHR23029 KOG4754 - - - AT1G58280.1 - Phosphoglycerate mutase family protein Cre03.g179700 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g3719.t1,Cre03.g179700.t1.1 - PTHR10552 - - - - - - - Cre02.g079400 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g1450.t1,Cre02.g079400.t1.1 PF00076 PTHR24012 - - - GO:0003676 AT4G19610.1 - nucleotide binding;nucleic acid binding;RNA binding Cre02.g100200 NUOP3 - 0 1 1.0 nan 0 1 1.0 nan M n - - NADH:ubiquinone oxidoreductase 22 kDa subunit Mitochondrial NADH:ubiquinone oxidoreductase (Complex I) 22 kDa subunit precursor, mitochondrial [AAS58502; PMID: 15710684, PMID: 15450959]; similar to At3g07480 gene product; unknown evolutionary origin g2040.t1,Cre02.g100200.t1.1 - - - - - - - - - Cre08.g371052 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g8693.t1, g8693.t2 PF06479,PF00069,PF00642 PTHR13954:SF6,PTHR13954 KOG0198 2.7.11.1,3.1.26.- K08852 GO:0006397,GO:0016891,GO:0004672,GO:0005524,GO:0006468,GO:0003676,GO:0008270 AT5G24360.1 ATIRE1-1,IRE1-1 inositol requiring 1-1 Cre11.g477150 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 11 - - g11849.t1 - - KOG0978 - - - AT5G20470.1 - myosin, putative Cre06.g279350 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g6495.t1 PF07969 - - - - - AT3G55850.2 LAF3,LAF3 ISF1,LAF3 ISF2 Amidohydrolase family Cre13.g563450 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 16 - - g13864.t1 - - - - - - - - - Cre03.g187800 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g3890.t1,Cre03.g187800.t1.1 - - - - - - - - - Cre04.g218900 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 10 - - g4771.t1 PF00004 PTHR10887:SF165,PTHR10887 KOG1807 - - GO:0005524 AT2G38770.1 EMB2765 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre03.g195366 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g4047.t1,Cre03.g195366.t1.1 - - - - - - - - - Cre17.g715500 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g17321.t1,Cre17.g715500.t1.1 PF00578 - - - - GO:0016209,GO:0016491 AT1G21350.3 - Thioredoxin superfamily protein Cre11.g478350 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 17 - - g11876.t1,Cre11.g478350.t1.1 - - - - - - - - - Cre01.g008891 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 - - g223.t1,Cre01.g008891.t1.1 PF00581 PTHR11364 - - - - AT1G79230.1 ATMST1,ATRDH1,MST1,ST1,STR1 mercaptopyruvate sulfurtransferase 1 Cre02.g088151 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g1640.t1 - - - - - - - - - Cre03.g166100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g3409.t1,Cre03.g166100.t1.1 - - - - - - - - - Cre10.g451700 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 16 - - g11097.t1 - - KOG4462 - - - - - - Cre17.g714000 HFO3,HFO21,HFO19 - 0 1 1.0 nan 0 1 1.0 nan O n - - Histone H4 Replication linked H4 cluster III (type 34BA) [PMID: 8590479]; replication linked H4 cluster XIX (type 34BA). Also annotated as HFO19 and HFO21 g17289.t1,Cre17.g714000.t1.1,HFO19,HFO21,HFO3 PF00125 PTHR10484 KOG3467 - K11254 GO:0000786,GO:0003677,GO:0005634,GO:0006334 AT5G59690.1 - Histone superfamily protein Cre16.g682600 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 6 - - g16450.t1 - PTHR24079,PTHR24079:SF1 - - - - AT5G49960.1 - - Cre02.g147750 FAP209 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g2506.t1,Cre02.g147750.t1.1 - - - - - - - - - Cre02.g096650 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g1963.t1,Cre02.g096650.t1.1 - - - - - - - - - Cre08.g362600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g8491.t1,Cre08.g362600.t1.1 PF00144 PTHR22935 - - - - - - - Cre12.g543850 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g13692.t1 PF09497 - - - - GO:0016455,GO:0006357,GO:0016592 - - - Cre05.g237000 MAP1D - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Methionine aminopeptidase Methionyl aminopeptidase, involved in N-terminal maturation of proteins; Metallopeptidase family M24; probably targeted to both chloroplast and mitochondrial [PMID: 11060042, 14532271] g5453.t1,Cre05.g237000.t1.1 PF00557 PTHR10804:SF50,PTHR10804 KOG2738 3.4.11.18 K01265 GO:0009987 AT4G37040.1 MAP1D methionine aminopeptidase 1D Cre10.g426800 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g10546.t1 PF02458 - - - - GO:0016747 - - - Cre16.g685950 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g16377.t1 - - - - - - - - - Cre06.g276800 HFO24 - 0 1 1.0 nan 0 1 1.0 nan O n - - Histone H4 Replication-linked Histone H4 g6205.t1,Cre06.g276800.t1.1,HFO24 PF00125 PTHR10484 KOG3467 - K11254 GO:0000786,GO:0003677,GO:0005634,GO:0006334 AT2G28740.1 HIS4 histone H4 Cre13.g577026 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g14180.t1 - - - - - - - - - Cre12.g490300 MSD4 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - Mn superoxide dismutase - g12179.t1,Cre12.g490300.t1.1 PF02777,PF00081 PTHR11404,PTHR11404:SF9 KOG0876 - - GO:0004784,GO:0006801,GO:0046872,GO:0055114 AT3G10920.1 ATMSD1,MEE33,MSD1 manganese superoxide dismutase 1 Cre17.g705650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g17102.t1, g17102.t2 - - - - - - - - - Cre03.g174700 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 16 - - g3608.t1 PF03265 - - - - GO:0004531,GO:0006259 - - - Cre07.g321050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g7422.t1 PF00733 PTHR11772 - - - GO:0004066,GO:0006529 AT2G03667.1 - Asparagine synthase family protein Cre04.g215500 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g4662.t1,Cre04.g215500.t1.1 PF09735 - - - - - - - - Cre10.g460100 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g11281.t1,Cre10.g460100.t1.1 PF00400 PTHR22847:SF228,PTHR22847 KOG0271 - - - AT5G52820.1 - WD-40 repeat family protein / notchless protein, putative Cre04.g220900 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g4822.t1,Cre04.g220900.t1.1 PF05686 PTHR12203,PTHR12203:SF16 - - - - - - - Cre16.g691050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g15664.t1,Cre16.g691050.t1.1 PF08381,PF00415 PTHR22870:SF25,PTHR22870 - - - - AT5G19420.1 - Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain Cre09.g401500 BSD3 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 3-beta hydroxysteroid dehydrogenase/isomerase 3-beta-hydroxy-delta5-steroid dehydrogenase g9235.t1,BSD3 PF01073 PTHR10366,PTHR10366:SF20 - - - GO:0003854,GO:0006694 AT2G33630.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre13.g565116 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13903.t1,Cre13.g565100.t1.2 - - - - - - - - - Cre04.g217903 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g4534.t1 PF01844 - - - - GO:0003676,GO:0004519 AT2G23840.1 - HNH endonuclease Cre04.g217900 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 5 - - g4750.t1,Cre04.g217900.t1.1 - - - - - - - - - Cre12.g558450 SPD1 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 Spermidine synthase Involved in polyamine biosynthesis; converts putrescine to spermidine by addition of an aminopropyl group derived from decarboxylated S-adenosyl Met g13360.t1,Cre12.g558450.t1.1,SPD1 PF01564 PTHR11558,PTHR11558:SF11 KOG1562 2.5.1.16 K00797 GO:0003824 AT1G23820.1 SPDS1 spermidine synthase 1 Cre04.g217906 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g4537.t1,Cre03.g211300.t1.1,Cre03.g211300.t1.2 PF09801 PTHR12952 - - - - - - - Cre04.g217905 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g4536.t1,Cre03.g211350.t1.1,Cre03.g211350.t1.2 - - - - - - - - - Cre12.g550200 SMM44 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g13544.t1,Cre12.g550200.t1.1,SMM44 PF08241 - - - - GO:0008152,GO:0008168 - - - Cre03.g197200 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g4084.t1 - - - - - - - - - Cre01.g027950 IFT74,IFT72 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 12 Intraflagellar transport protein 74/72 Intraflagellar transport particle protein 74/72. Also known as IFT72 g639.t1,Cre01.g027950.t1.1,IFT72 - - - - - - - - - Cre17.g718250 DRR1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g17383.t1,DRR1 PF04321 PTHR10491:SF2,PTHR10491 - - - GO:0008831,GO:0045226 AT4G00560.4 - NAD(P)-binding Rossmann-fold superfamily protein Cre10.g455700 PAP5 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 8 Non-canonical poly(A) polymerase - g11183.t1,Cre10.g455700.t1.1,PAP5 PF03828 PTHR12271 - - - - AT2G45620.1 - Nucleotidyltransferase family protein Cre01.g019051 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 10 - - g447.t1 - - - - - - - - - Cre02.g089950 IFT20 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Intraflagellar transport protein 20 - g1680.t1,Cre02.g089950.t1.1 - - - - - - - - - Cre04.g225850 VAM3,VAMP73 - 0 1 1.0 nan 0 1 1.0 nan SP n - - Endosomal R-SNARE protein, Vamp7/Nyv1-family (R.III) Endosomal R-SNARE protein, Vamp7/Nyv1-family (R.III). Expressed Protein. Class R.III SNARE, involved in Golgi/PM and Golgi/endosomal trafficking (PMID: 17596510). Most similar to VAMP72-family of land plants, part of 4-member gene family in Chlamydomona g4937.t1,Cre04.g225850.t1.1,VAM3,VAMP73 PF00957 PTHR21136,PTHR21136:SF46 KOG0859 - - GO:0016021,GO:0016192 AT3G54300.1 ATVAMP727,VAMP727 vesicle-associated membrane protein 727 Cre13.g586500 KIN17-2 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g14391.t1,Cre13.g586500.t1.1,KIN17-2 PF00225 PTHR24115,PTHR24115:SF364 KOG4280 - - GO:0003777,GO:0005524,GO:0007018 AT3G19050.1 POK2 phragmoplast orienting kinesin 2 Cre07.g326200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g7586.t1,Cre07.g326200.t1.1 - - - - - - - - - Cre17.g700450 GFY1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 15 - - g16986.t1,Cre17.g700450.t1.1,GFY1 PF01184 - - - K07034 GO:0016020 - - - Cre02.g093975 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g1776.t2,Cre02.g094004.t3.1, g1776.t1,Cre02.g094004.t1.2, g1776.t3,Cre02.g094004.t2.1 PF00076 PTHR23139,PTHR23139:SF9 KOG0120 - K12837 GO:0003676 AT4G36690.1, AT1G60900.1 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor Cre17.g726400 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 - - g17564.t1 PF03798 PTHR12560 KOG1607 - - GO:0016021 AT3G19260.1 LAG1 HOMOLOG 2,LOH2 LAG1 homologue 2 Cre02.g115400 - 0 18 1.0 1.0 0 18 1.0 1.0 SP n - 11 - - g2385.t1 PF01822 - - - - - AT2G10940.1 - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Cre09.g389838 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - - - g9652.t1,Cre02.g125000.t1.1,Cre02.g125000.t1.2 PF00076 PTHR24622:SF205,PTHR24622 KOG0144 - - GO:0003676 AT2G43410.2 FPA RNA binding Cre12.g498650 ALK3 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Aurora-like kinase - g12612.t1,Cre12.g498650.t1.1,ALK3 PF00069 PTHR24349:SF118,PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre06.g266950 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 15 - - g5991.t1 PF00320 PTHR10071 - - - GO:0003700,GO:0006355,GO:0008270,GO:0043565 - - - Cre02.g087500 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g1625.t1 - - - - - - - - - Cre03.g170700 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 9 - - g3517.t1 PF00722 PTHR10963,PTHR10963:SF6 - - - GO:0004553,GO:0005975 - - - Cre03.g196550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g4071.t1,Cre03.g196550.t1.1 PF03992 - - - - GO:0005737,GO:0016491,GO:0017000 - - - Cre03.g202250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g4276.t1,Cre03.g202250.t1.1 PF09507 PTHR17598:SF3,PTHR17598 - - K03504 GO:0005634,GO:0006260 AT1G78650.1 POLD3 DNA-directed DNA polymerases Cre02.g142126 FAP115 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g2754.t1,Cre15.g646300.t1.1 - PTHR20875 - - - - - - - Cre04.g224100 URN2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g4889.t1,Cre04.g224100.t1.1,URN2, g4889.t2,URN2 PF01156 PTHR12304 KOG2938 - - - AT1G05620.1 URH2 uridine-ribohydrolase 2 Cre06.g270750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated - - - g6075.t1 PF07887 - - - - - - - - Cre11.g475626 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g11815.t1 - - - - - - - - - Cre06.g273400 TMC2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g6133.t1,Cre06.g273400.t1.1,TMC2 - - - - - - - - - Cre17.g725350 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 - - g17542.t1, g17542.t2 PF07915 PTHR12630, PTHR12630,PTHR12630:SF1 KOG2397 - K08288 - AT5G56360.1 PSL4 calmodulin-binding protein Cre01.g030650 PHR5 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g694.t1,Cre01.g030650.t1.1,PHR5 PF03441,PF00875 PTHR11455 - - - GO:0003913,GO:0006281 AT5G24850.1 CRY3 cryptochrome 3 Cre06.g298650 HEL30 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g6908.t1,Cre06.g298650.t1.1,HEL30 PF00271,PF00270 PTHR24031,PTHR24031:SF2 KOG0328 - K03257 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT3G13920.1 EIF4A1,RH4,TIF4A1 eukaryotic translation initiation factor 4A1 Cre04.g230634 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 8 - - g5043.t1 - PTHR26392,PTHR26392:SF98 - - - - - - - Cre16.g684939 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g16817.t1,Cre01.g070100.t1.1 - PTHR11207 - - - - - - - Cre01.g014950 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g361.t2, g361.t1 - - - - - - - - - Cre12.g533400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g13121.t1 PF10260 - KOG3249 - - - AT2G35360.1 - ubiquitin family protein Cre10.g440650 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g10845.t1 PF08241 PTHR12176 - - - GO:0008152,GO:0008168 AT3G60910.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre09.g388050 - 0 5 1.0 1.0 0 5 1.0 1.0 C n upregulated - - - g9542.t1,Cre09.g388050.t1.1 - - - - - - - - - Cre15.g635000 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 17 - - g15314.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre09.g409000 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 10 - - g10137.t1 - - - - - - - - - Cre01.g039600 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 8 - - g884.t1 - PTHR18460:SF3,PTHR18460 - - - - AT1G79190.1 - ARM repeat superfamily protein Cre02.g084850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g1566.t1 - - - - - - - - - Cre09.g386900 RAB18,RABC1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 9 Small Rab-related GTPase Expressed Protein. Similar to the RabC/Rab18 family of small GTP-ases; One of 3 C-type Rabs. Previously annotated as RABC1 g9567.t1,Cre09.g386900.t1.1,RAB18,RABC1 PF00071 PTHR24073,PTHR24073:SF482 KOG0080 - - - AT1G43890.1 ATRAB-C1,ATRAB18,ATRABC1,RAB18,RAB18-1,RABC1 RAB GTPASE HOMOLOG B18 Cre09.g397919 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g9877.t1 - - - - - - - - - Cre04.g212300 PPP17 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n upregulated 2 - - g4733.t1,PPP17 PF00498,PF00481 PTHR13832,PTHR13832:SF10 - 3.1.3.16 K01090 GO:0005515,GO:0003824 AT5G19280.2 KAPP,RAG1 kinase associated protein phosphatase Cre02.g113300 OPR6 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 1 - - g2333.t1 - - - - - - - - - Cre04.g213050 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g4717.t1,Cre04.g213050.t1.1 - - - - - - - - - Cre03.g180550 NTD5,FPN2 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 9 5\'-nucleotidase Ecto-5\'-nucleotidase precursor; 2,3-cyclic-nucleotide 2-phosphodiesterase. Previously annotated as NTD5 g3742.t1,Cre03.g180550.t1.1,FPN2,NTD5 PF02872,PF00149 PTHR11575,PTHR11575:SF8 - 3.1.3.5 K01081 GO:0009166,GO:0016787 - - - Cre06.g297150 RWP9 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 RWP-RK transcription factor Putative RWP-RK domain transcription factor; model is very tentative g6875.t1,RWP9 PF02042 - - - - - AT1G74480.1 - RWP-RK domain-containing protein Cre03.g201250 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g4300.t1,Cre03.g201250.t1.1 PF12171,PF01585 PTHR17614,PTHR17614:SF5 - - - GO:0003676,GO:0005622 AT5G26610.1 - D111/G-patch domain-containing protein Cre16.g649900 HTR40 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 Histone H3 - g15725.t1,HTR40 PF00125 PTHR11426 KOG1745 - K11253 GO:0003677,GO:0000786,GO:0006334 AT4G40030.2 - Histone superfamily protein Cre17.g736900 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g17824.t1,Cre17.g736900.t1.1 - - - - - - - - - Cre01.g050451 TTL6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g1115.t1,Cre01.g050450.t1.3,TTL6 PF03133 PTHR12241,PTHR12241:SF11 - - - GO:0004835,GO:0006464 AT1G77550.1 - tubulin-tyrosine ligases;tubulin-tyrosine ligases Cre04.g221000 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g4824.t1,Cre04.g221000.t1.1 PF07859 PTHR23024 - - - GO:0008152,GO:0016787 AT1G26120.1 ICME-LIKE1 alpha/beta-Hydrolases superfamily protein Cre01.g054750 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g1208.t1,Cre01.g054750.t1.1 PF00069 PTHR24347,PTHR24347:SF65 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT4G04740.2 ATCPK23,CPK23 calcium-dependent protein kinase 23 Cre06.g296400 - 0 5 1.0 1.0 0 5 1.0 1.0 M n downregulated 16 - - g6855.t1,Cre06.g296400.t1.1 PF02770,PF00441,PF02771 PTHR10909,PTHR10909:SF121 KOG0141 1.3.99.10 K00253 GO:0003995,GO:0055114,GO:0016627 AT3G45300.1 ATIVD,IVD,IVDH isovaleryl-CoA-dehydrogenase Cre10.g443300 CNK5 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 NimA-related protein kinase NimA (never-in-mitosis) related kinase homolog 5 [gi:34334399, PMID: 15068267] g10901.t1,Cre10.g443300.t1.1,CNK5 PF00069 PTHR24361,PTHR24361:SF25 KOG0589 2.7.11.1 K08857 GO:0004672,GO:0005524,GO:0006468 AT3G04810.1 ATNEK2,NEK2 NIMA-related kinase 2 Cre14.g612850 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 16 - - g14767.t1 PF04564 PTHR24420,PTHR24420:SF939 - - - GO:0000151,GO:0004842,GO:0016567 AT2G19410.1 - U-box domain-containing protein kinase family protein Cre06.g261100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g5869.t1,Cre06.g261100.t1.1 - - - - - - - - - Cre09.g411200 TEF5 - 0 1 1.0 nan 0 1 1.0 nan C Y upregulated 4 Rieske [2Fe-2S] domain containing protein Rieske [2Fe-2S] domain containing protein; putative, chloroplast location proposed; Present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]. Acclimation to changing CO2 concentrations and light intensitie g10182.t1,Cre09.g411200.t1.1 - PTHR21496 - - - - AT1G71500.1 - Rieske (2Fe-2S) domain-containing protein Cre02.g085100 CYG59 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 18 - - g1572.t1,Cre02.g085100.t1.1 PF00211 PTHR11920:SF112,PTHR11920 - 4.6.1.2 K12323 GO:0009190,GO:0016849,GO:0035556 - - - Cre16.g668950 CPZ - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - - - g16256.t1,CPZ PF00246 PTHR11705:SF3,PTHR11705 - - - GO:0004181,GO:0006508,GO:0008270 AT5G42320.1 - Zn-dependent exopeptidases superfamily protein Cre15.g639552 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g15414.t1 - - - - - - - - - Cre06.g264550 CGL81 - 0 4 1.0 1.0 0 4 1.0 1.0 C Y downregulated 6 Predicted protein Conserved expressed protein of unknown function; putative plastid protein g5943.t1,Cre06.g264550.t1.1 PF09366 - - - - - AT5G04440.1 - Protein of unknown function (DUF1997) Cre10.g435900 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 - - g10748.t1 - - - - - - - - - Cre01.g045903 DGAT1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 9 - - g1030.t1 PF03062 PTHR10408 - 2.3.1.20,2.3.1.75,2.3.1.76 K11155 - AT2G19450.1 ABX45,AS11,ATDGAT,DGAT1,RDS1,TAG1 membrane bound O-acyl transferase (MBOAT) family protein Cre14.g615618 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14831.t1 - - - - - - - - - Cre13.g581500 OPR41 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g14281.t1 - - - - - - - - - Cre12.g505900 TIM50 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 11 Mitochondrial inner membrane translocase Subunit of 50 kDa of the mitochondrial import inner membrane translocase. Model should probably be combined with downstream model, Au9.Cre12.g505950(+) g12449.t1 - PTHR12210,PTHR12210:SF3 - - - - - - - Cre02.g115150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 5 - - g2379.t1, g2379.t2 PF04117 PTHR11266 KOG1944 - - GO:0016021 AT5G19750.1 - Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Cre03.g171550 SSA13 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - Predicted protein Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA) g3536.t1,SSA13 PF10507 PTHR21706,PTHR21706:SF14 KOG4619 - - - - - - Cre13.g580450 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 16 - - g14259.t1 PF00651 - - - - GO:0005515 AT4G15840.1 - BTB/POZ domain-containing protein Cre03.g206800 HXT1 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 9 Hexose transporter Putative plastid hexose (glucose) transporter, based on similarity to putative plastid glucose transporters from maize (GenBank AAF74568), olive (GenBank AAK62031), tobacco (GenBank AAF74566), and potato (GenBank AAF74567) g4175.t1,HXT1 PF00083 PTHR24063,PTHR24063:SF84 KOG0254 - - GO:0016021,GO:0022857,GO:0055085 AT5G16150.1 GLT1,PGLCT plastidic GLC translocator Cre07.g321600 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g7433.t1,Cre07.g321600.t1.1 - - - - - - - - - Cre09.g397450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g9333.t1 - PTHR23023 - - - - - - - Cre07.g350100 - 0 11 1.0 1.0 0 11 1.0 1.0 M n - 11 - - g8145.t1 - PTHR12706 KOG1513 - - - AT1G79350.1 EMB1135 RING/FYVE/PHD zinc finger superfamily protein Cre01.g022200 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 - - g512.t1,Cre01.g022200.t1.1 - - - - - - - - - Cre09.g393750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g9414.t4, g9414.t3, g9414.t2, g9414.t1 - - - - - - - - - Cre09.g396500 HAD3 - 0 10 1.0 1.0 0 10 1.0 1.0 O n upregulated 2 - - g9358.t1,HAD3 PF08282 - - - - - - - - Cre06.g284250 LHCBM8 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 Chlorophyll a/b binding protein of LHCII Chlorophyll a-b binding protein of LHCII g6609.t1,Cre06.g284250.t1.1 PF00504 PTHR21649 - - K08913 GO:0009765,GO:0016020 AT2G05100.1 LHCB2,LHCB2.1 photosystem II light harvesting complex gene 2.1 Cre01.g070567 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g1287.t1,Cre23.g765850.t1.1,Cre23.g765850.t1.2 PF06870 - KOG4183 - - GO:0003677,GO:0003899,GO:0005634,GO:0006351 AT3G13940.1 - DNA binding;DNA-directed RNA polymerases Cre08.g358558 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 1 - - g8374.t1,Cre28.g777100.t1.1,Cre28.g777100.t1.2 - - - - - - - - - Cre08.g358559 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 1 - - g8375.t1,Cre28.g777050.t1.1 - - - - - - - - - Cre13.g563733 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13871.t1, g13871.t2 PF00069 PTHR24360 KOG0581 - - GO:0004672,GO:0005524,GO:0006468 AT5G56580.1 ANQ1,ATMKK6,MKK6 MAP kinase kinase 6 Cre08.g358552 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 11 - - g8368.t1,Cre28.g777400.t1.1 - - - - - - AT3G27930.2 - - Cre08.g358557 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 7 - - g8373.t1,Cre28.g777150.t1.1,Cre28.g777150.t1.2 - - KOG4539 - - - AT1G53760.1 - - Cre08.g358554 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8370.t1,Cre28.g777300.t1.1,Cre28.g777300.t1.2 PF00782 PTHR10159 - - - GO:0006470,GO:0008138 AT3G23610.2 DSPTP1 dual specificity protein phosphatase 1 Cre08.g358555 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 4 - - g8371.t1,Cre28.g777250.t1.1,Cre28.g777250.t1.2 PF00850 PTHR10625,PTHR10625:SF9 KOG1344 - - - AT5G26040.2 HDA2 histone deacetylase 2 Cre12.g558200 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g13366.t1 - - - - - - - - - Cre01.g053900 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 13 - - g1191.t1 PF01841 PTHR12143 - 3.5.1.52 K01456 - AT5G49570.1 AtPNG1,PNG1 peptide-N-glycanase 1 Cre01.g040000 RPL26 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 Ribosomal protein L26, component of cytosolic 80S ribosome and 60S large subunit Cytosolic 80S ribosomal protein L26; Cytosolic 60S large ribosomal subunit protein L26 g893.t1,Cre01.g040000.t1.1 PF00467 PTHR11143 KOG3401 - K02898 GO:0003735,GO:0006412,GO:0015934 AT3G49910.1 - Translation protein SH3-like family protein Cre17.g731150 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g17668.t1,Cre17.g731150.t1.1 PF01105 PTHR22811:SF31,PTHR22811 KOG1692 - - GO:0006810,GO:0016021 AT3G22845.1 - emp24/gp25L/p24 family/GOLD family protein Cre12.g555000 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 17 - - g13433.t1 - - - - - - - - - Cre12.g555001 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 2 - - g13434.t1,Cre12.g554950.t1.3 - - - - - - - - - Cre10.g452700 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g11118.t1,Cre10.g452700.t1.1, g11118.t2 - - - - - - - - - Cre17.g731500 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g17676.t1,Cre17.g731500.t1.1 - - - - - - - - - Cre06.g280150 PSBP9 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 6 PsbP-like protein Related to the 23 kDa PsbP subunit of the oxygen evolving system of photosystem II g6515.t1,Cre06.g280150.t1.1 PF01789 - - - - GO:0005509,GO:0009523,GO:0009654,GO:0015979,GO:0019898 AT3G56650.1 - Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein Cre13.g592100 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 15 - - g14516.t1 PF00628,PF00097 PTHR22880:SF5,PTHR22880 - - - GO:0005515 AT3G05670.1 - RING/U-box protein Cre10.g455950 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g11188.t1 PF03358 - KOG3135 - - - AT5G54500.1 FQR1 flavodoxin-like quinone reductase 1 Cre16.g662000 HEL62 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g15987.t1,Cre16.g662000.t1.1,HEL62 PF00271,PF00270 PTHR24031,PTHR24031:SF28 KOG0342 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT5G08610.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre03.g169850 TSC1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 - - g3497.t1,Cre03.g169850.t1.1,TSC1 PF01406 PTHR10890 KOG2007 6.1.1.16 K01883 GO:0000166,GO:0004817,GO:0005524,GO:0005737,GO:0006412,GO:0006423 AT2G31170.1 SYCO ARATH Cysteinyl-tRNA synthetase, class Ia family protein Cre07.g352500 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g8199.t1 - - - - - - - - - Cre14.g625050 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 15 - - g15057.t1 PF00069 PTHR23257:SF325,PTHR23257 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre17.g705350 CDPKK2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Calcium-dependent protein kinase kinase CDPKK2b; Calcium/Calmodulin Dependent Protein Kinase Kinase Homolog 2 isoform beta putative g17096.t1,CDPKK2 PF00069 PTHR24347,PTHR24347:SF40 KOG0583 2.7.11.17 K07359 GO:0004672,GO:0005524,GO:0006468 AT3G45240.1 ATSNAK2,GRIK1 geminivirus rep interacting kinase 1 Cre01.g029000 COQD2,UMM1,COQ5D - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 2 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE/COQ5 methyltransferase family; possibly functioning in chloroplast. Previously annotated as COQ5D g661.t1,Cre01.g029000.t1.1,COQ5D,UMM1 PF08241 PTHR10108,PTHR10108:SF237 - - - GO:0008152,GO:0008168 AT1G48600.1 AtPMEAMT,PMEAMT S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre08.g359200 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 9 - - g8414.t1 PF00415 PTHR22870:SF117,PTHR22870 KOG1427 - - - AT5G63860.1 UVR8 Regulator of chromosome condensation (RCC1) family protein Cre02.g096300 CCM1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 Regulator of CO2-responsive genes Master regulator of CO2-responsive genes including low-CO2 inducible genes necessary for carbon-concentrating mechanism; CCM1-A and CCM1-B, are generated by an alternative splicing between 3rd and 4th exons, CCM1B=CIA5=698aa, CCM1A=699aa, Zn-finger domain g1955.t2,CCM1, g1955.t1,CCM1 - - - - - - - - - Cre09.g394900 CYA10 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 15 - - g9392.t1,CYA10 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre12.g509950 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - - - - g12352.t1 - - - - - - - - - Cre03.g168450 CCT8 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 T-complex protein 1, theta subunit T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta) (TCPQ); subunit 8 of cytosolic chaperonin complex g3466.t1,Cre03.g168450.t1.1,CCT8 PF00118 PTHR11353:SF19,PTHR11353 KOG0362 - - GO:0005524,GO:0006457,GO:0051082,GO:0044267 AT3G03960.1 - TCP-1/cpn60 chaperonin family protein Cre07.g331100 PHC11 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Cell wall protein pherophorin-C11 Pherophorin-C11 (PHC11) [PMID: 16367971]; partial sequence very similar to extracellular matrix protein (cell wall protein) pherophorin-C1 [Genbank entry DQ196107], which belongs to the large pherophorin-family, a family of glycoproteins with a central hy g7703.t1,Cre07.g331100.t1.1,PHC11 - - - - - - - - - Cre11.g467562 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g11491.t1,Cre18.g750250.t1.1 - - - - - - - - - Cre11.g467563 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated 4 - - g11492.t1,Cre18.g750200.t1.1,Cre18.g750200.t1.2 PF03765,PF00650 PTHR10174:SF78,PTHR10174 KOG1471 - - - AT1G22180.2 - Sec14p-like phosphatidylinositol transfer family protein Cre11.g467560 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g11489.t1, g11489.t2 PF04969 PTHR22904,PTHR22904:SF20 KOG0548, KOG1309 - - - AT5G10200.1 - ARM-repeat/Tetratricopeptide repeat (TPR)-like protein Cre11.g467561 FAP222 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g11490.t1,Cre18.g750300.t1.1,Cre18.g750300.t1.2 - - - - - - - - - Cre11.g467567 UBQ1 - 0 20 1.0 1.0 0 20 1.0 1.0 O n - 17 Ubiquitin Post-translationally modifies proteins to tag them for proteasome-mediated degradation, internalization etc.; contains two ubiquitin domains in tandem (alternatively spliced form contains only one); post-translationally modifies proteins to tag them for p g11496.t1,Cre18.g750000.t1.1,Cre18.g750000.t1.2,UBQ1 PF00240 PTHR10666 KOG0005 - K08770 GO:0005515 AT4G05320.2 UBQ10 polyubiquitin 10 Cre11.g467564 ARL16 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - ARF-like GTPase ARF-like 16, a member of the ARF/Sar1 GTPase family. Orthologs in a wide array of eukaryotes (ARL16 in human) but function yet to be determined g11493.t1,Cre18.g750150.t1.1,ARL16 PF00025 PTHR11711,PTHR11711:SF56 KOG0072 - - GO:0005525 AT5G52210.1 ATARLB1,ATGB1,GB1 GTP-binding protein 1 Cre11.g467565 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g11494.t1,Cre18.g750100.t1.1,Cre18.g750100.t1.2 - - - - - - - - - Cre17.g703176 MSD5 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g17048.t1 PF02777,PF00081 PTHR11404,PTHR11404:SF9 KOG0876 - - GO:0004784,GO:0006801,GO:0046872,GO:0055114 AT3G56350.1 - Iron/manganese superoxide dismutase family protein Cre14.g620750 - 0 1 1.0 nan 0 1 1.0 nan SP n - 3 - - g14960.t1 - - - - - - - - - Cre03.g186700 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 - - g3868.t1 - - - - - - - - - Cre12.g557400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g13381.t1,Cre12.g557400.t1.1 PF03835,PF10403,PF10405 PTHR12135 KOG2945 - K10838 GO:0003684,GO:0005634,GO:0006289 AT5G16630.1 ATRAD4,RAD4 DNA repair protein Rad4 family Cre13.g587100 PCYA,PCYA1 - 0 1 1.0 nan 0 1 1.0 nan C n - 3 Phycocyanobilin ferredoxin oxidoreductase-like protein Related to phycocyanobilin:ferredoxin oxidoreductase (EC 1.3.7.2), plastid targeted [PMID:11283349; PMID: 16380422]. Previously annotated as PCYA (after the bacterial name) but this conflicts with symbol for plastocyanin. g14404.t1,Cre13.g587100.t1.1,PCYA PF05996 - - - - GO:0010024,GO:0016636,GO:0050897,GO:0055114 - - - Cre03.g187250 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 14 - - g3879.t1,Cre03.g187250.t1.1 PF05514 - - - - - AT5G43460.1 - HR-like lesion-inducing protein-related Cre12.g526700 RBL9 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 Rhomboid-like protease Similar to rhomboid intramembrane proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); possibly organelle-targeted g12977.t1,RBL9 PF01694 - KOG2632 - - GO:0004252,GO:0016021 AT1G25290.2 ATRBL10,RBL10 RHOMBOID-like protein 10 Cre12.g523950 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g12902.t1,Cre12.g523950.t1.1 PF06814 PTHR21229,PTHR21229:SF2 KOG2569 - - GO:0016021 AT5G42090.1 - Lung seven transmembrane receptor family protein Cre03.g180700 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g3745.t1 PF01722 - - - - - AT4G26500.1 ATSUFE,CPSUFE,EMB1374,SUFE1 chloroplast sulfur E Cre04.g229350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 9 - - g5020.t1,Cre04.g229350.t1.1 PF04072 PTHR13600 KOG2918 - - GO:0008168 AT1G02100.1 - Leucine carboxyl methyltransferase Cre08.g378250 SMM32 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g8904.t1,SMM32, g8904.t2,Cre08.g378250.t1.1,SMM32 PF10294 PTHR21095 KOG2920 - - - AT4G14000.1 - Putative methyltransferase family protein Cre01.g041100 HLM3 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 2 - - g920.t1,HLM3 PF00856 PTHR12197:SF88,PTHR12197 - - - GO:0005515 AT3G21820.1 ATXR2,SDG36 histone-lysine N-methyltransferase ATXR2 Cre12.g510950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 13 - - g12329.t1,Cre12.g510950.t1.1 - - - - - - - - - Cre05.g236700 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 15 - - g5445.t1, g5445.t2 - - - - - - - - - Cre02.g109150 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g2238.t1 PF00400 PTHR14205 - - - - AT1G20540.1 - Transducin/WD40 repeat-like superfamily protein Cre01.g040850 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 16 - - g915.t2,Cre01.g040850.t1.1, g915.t1 PF06011 - - - - - - - - Cre04.g231222 CPN60A - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 3 Chaperonin 60A GroEL/HSP60-homolog, targeted to the chloroplast; called Cpn60-alpha in higher plants; shares only ~50% similarity with chloroplast-targeted CPN60Bs; higher plant Cpn60-alpha with Cpn60-betas form stacks of two hetero-oligomeric heptameric rings; Cpn60s r g5049.t2,CPN60A, g5049.t1 PF00530,PF00118 PTHR11353:SF11,PTHR11353 KOG0356 - - GO:0005044,GO:0016020,GO:0005524,GO:0044267 AT2G28000.1 CH-CPN60A,CPN60A,SLP chaperonin-60alpha Cre08.g377550 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 15 - - g8890.t1,Cre08.g377550.t1.1 PF03226 PTHR13847:SF40,PTHR13847 KOG3399 - - - AT4G27745.1 - Yippee family putative zinc-binding protein Cre06.g259350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g5830.t1,Cre06.g259350.t1.1 - - - - - - - - - Cre09.g406050 PYR7 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 CTP synthase CTP synthase (UTP-ammonia lyase); CTPS or PYRG; URA7 and URA8 in yeast; contains a stretch of 9 His residues g10067.t1,Cre09.g406050.t1.1,PYR7 PF00117,PF06418 PTHR11550 KOG2387 6.3.4.2 K01937 GO:0003883,GO:0006221 AT1G30820.1 - CTP synthase family protein Cre02.g118650 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 5 - - g2462.t1 PF12499 - - - - - - - - Cre09.g401000 SNE3 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 UDP-N-acetylglucosamine/UDP-glucose 4-epimerase UDP-N-acetylglucosamine/UDP-glucose 4-epimerase. An NAD-dependent epimerase/dehydratase; belongs to a family of proteins which utilise NAD as a cofactor and use nucleotide-sugar substrates for a variety of chemical reactions. Previously annotated as SNE g9247.t1,SNE3 - - - - - - - - - Cre02.g119300 - 0 1 1.0 nan 0 1 1.0 nan SP n - 1 - - g2475.t1,Cre02.g119300.t1.1 - - - - - - - - - Cre10.g444300 - 0 1 1.0 nan 0 1 1.0 nan C n - 18 - - g10925.t1,Cre10.g444300.t1.1 - - - - - - - - - Cre17.g716050 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 5 - - g17334.t1 PF00004 PTHR20953 - - - GO:0005524 AT1G73170.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre02.g090150 PANC1,PAN3,PANC,CAF2 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 Pantothenate synthetase Pantothenate synthetase; Pantoate-beta-alanine ligase. Previously annotated as PANC g1684.t1,Cre02.g090150.t1.1,PAN3,CAF2,PANC PF02569 PTHR21299,PTHR21299:SF1 - 6.3.2.1 K01918 GO:0004592,GO:0015940 AT5G48840.1 ATPTS,PANC,PTS homolog of bacterial PANC Cre16.g660331 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g15949.t1,Cre16.g660331.t1.1 - - - - - - - - - Cre09.g414000 HPT1,VTE8 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 7 - - g10254.t1,Cre09.g414000.t1.1,VTE8 PF01040 PTHR11048,PTHR11048:SF1 - - K09833 GO:0004659,GO:0016021 AT2G18950.1 ATHPT,HPT1,TPT1,VTE2 homogentisate phytyltransferase 1 Cre12.g492350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 - - g12104.t1,Cre12.g492350.t1.1 PF01963 - - - - - AT1G05270.1 - TraB family protein Cre07.g354100 HAT4 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g8238.t1,Cre07.g354100.t1.1,HAT4 PF04055,PF00583 PTHR11135 KOG2535 2.3.1.48 K07739 GO:0003824,GO:0051536,GO:0008080,GO:0008152 AT5G50320.1 AtELP3,ELO3,ELP3,HAC8,HAG3 radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein Cre01.g002787 SRR24 - 0 15 1.0 1.0 0 15 1.0 1.0 O n - - - - g66.t1,Cre01.g002800.t1.3,SRR24 PF00704,PF00059,PF03762,PF00530 PTHR11177:SF44,PTHR11177 KOG2806 - - GO:0004553,GO:0005975,GO:0005488,GO:0030704,GO:0005044,GO:0016020 AT4G19800.1 - Glycosyl hydrolase family protein with chitinase insertion domain Cre03.g145047 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g2916.t1 - - - - - - - - - Cre12.g551802 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g13508.t1 - - - - - - AT5G12370.1 SEC10 exocyst complex component sec10 Cre15.g641950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g15479.t1 - - - - - - - - - Cre06.g285500 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g6636.t1 - - - - - - AT5G13340.1 - - Cre01.g054100 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 13 - - g1195.t1 PF00560 PTHR23155,PTHR23155:SF81 KOG0617 - - GO:0005515 AT3G15410.1 - Leucine-rich repeat (LRR) family protein Cre12.g561050 ELG18,ELG19 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g13297.t1,ELG18,ELG19 PF03016,PF07974 PTHR11062,PTHR11062:SF12 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre14.g628237 - 0 7 1.0 1.0 0 7 1.0 1.0 C n downregulated 18 - - g15134.t1,Cre14.g628250.t3.1, g15134.t2,Cre14.g628250.t2.1, g15134.t3,Cre14.g628250.t1.3 PF00069 PTHR23257:SF341,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G50000.1, AT5G58950.1 - Protein kinase superfamily protein Cre06.g258000 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g5799.t1,Cre06.g258000.t1.1 PF03024 - - - - - - - - Cre10.g433500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g10694.t1 PF04720 - - - - - AT3G07350.1 - Protein of unknown function (DUF506) Cre13.g588250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g14429.t1 - PTHR20837 - - - - - - - Cre08.g370700 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g8686.t1,Cre08.g370700.t1.1 - - - - - - - - - Cre05.g243000 - 0 1 1.0 nan 0 1 1.0 nan O n - 3 - - g5286.t1 PF00072 PTHR26402:SF38,PTHR26402 - - K14491 GO:0000156,GO:0000160,GO:0006355 AT3G16857.2 ARR1,RR1 response regulator 1 Cre10.g429880 CGL156 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g10619.t2,Cre10.g429900.t2.1, g10619.t4,Cre10.g429900.t3.1, g10619.t1,Cre10.g429900.t4.1, g10619.t3,Cre10.g429900.t1.3 PF01388 - - - - GO:0003677,GO:0005622 AT3G43240.1 - ARID/BRIGHT DNA-binding domain-containing protein Cre10.g459700 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g11273.t1 - - - - - - - - - Cre12.g493000 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g12090.t1,Cre12.g493000.t1.1 PF00999 PTHR16254 - - - GO:0006812,GO:0015299,GO:0016021,GO:0055085 AT5G51710.2 ATKEA5,KEA5 K+ efflux antiporter 5 Cre07.g357450 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 - - g8311.t1 - - - - - - - - - Cre02.g110300 DNJ25 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 4 DnaJ-like protein DnaJ-like protein, probably cytosolic since it contains very short N-terminal extension and homologs in Arabidopsis (Q8RYC5, Q8L7R1, and Q9FMD2) are predicted by TargetP to be cytosolic; contains N-terminal J-domain (pfam00226); no homology to other prote g2264.t1,Cre02.g110300.t1.1 PF00226 PTHR24076 - - - GO:0031072 AT5G16650.1 - Chaperone DnaJ-domain superfamily protein Cre07.g340850 CYP743A2,CYP19 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 16 Cytochrome P450, CYP197 superfamily Cytochrome P450, CYP197 superfamily. Cytochrome P450s are involved in the oxidative degradation of various compounds. Particularly well known for their role in the degradation of environmental toxins and mutagens. Structure is mostly alpha, and binds a h g7978.t1,Cre07.g340850.t1.1,CYP19 PF00067 PTHR24301,PTHR24301:SF127 KOG0158 1.14.14.1 K07424 GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT2G26170.1 CYP711A1,MAX1 cytochrome P450, family 711, subfamily A, polypeptide 1 Cre18.g749197 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 17 - - g18100.t1,Cre31.g779950.t1.1 - - - - - - - - - Cre09.g387319 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g9583.t1,Cre02.g121750.t1.1,Cre02.g121750.t1.2 PF01207 PTHR11082,PTHR11082:SF9 - - - GO:0008033,GO:0017150,GO:0050660,GO:0055114 AT4G38890.1 - FMN-linked oxidoreductases superfamily protein Cre01.g014400 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 6 - - g350.t1 - - - - - - - - - Cre17.g696900 STPK20,STK20 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK20 g16903.t1,STK20,STPK20 PF00069 PTHR23257,PTHR23257:SF285 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT4G24480.1 - Protein kinase superfamily protein Cre10.g447767 AOF2 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 - - g11012.t1,AOF2 PF01593 PTHR10742 KOG0029 - - - AT4G16310.1 LDL3 LSD1-like 3 Cre14.g619050 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g14918.t1,Cre14.g619050.t1.1 PF04479 - - - - GO:0006950,GO:0016021 - - - Cre09.g399513 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 14 - - g9921.t1,Cre02.g136750.t1.1 - - - - - - - - - Cre09.g393100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9427.t1 - - - - - - - - - Cre12.g493200 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g12086.t1 - - - - - - - - - Cre03.g153250 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g3121.t1 - - - - - - - - - Cre15.g635993 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g15341.t1,Cre15.g635993.t1.1 - - - - - - - - - Cre04.g218250 ARL3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - ARF-like GTPase Expressed Protein. Similar to the ARL3 type of ARF-related small GTPase. This type of GTPase is found in animals but not in angiosperms. Found in the flagellar proteome [PMID: 15998802] g4757.t1,Cre04.g218250.t1.1,ARL3 PF00025 PTHR11711,PTHR11711:SF27 KOG0073 - K07944 GO:0005525 AT2G18390.1 ARL2,ATARLC1,HAL,TTN5 ADP-ribosylation factor family protein Cre02.g106500 IPP2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g2183.t1,Cre02.g106500.t1.1,IPP2 PF00293 PTHR12629 KOG2839 - - GO:0016787 AT1G12880.1 atnudt12,NUDT12 nudix hydrolase homolog 12 Cre10.g418400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g10359.t1, g10359.t2 PF08590,PF01713 - - - - - AT2G26280.1 CID7 CTC-interacting domain 7 Cre05.g242350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 5 - - g5305.t1,Cre05.g242350.t1.1 PF00689,PF00702,PF00690,PF00122 PTHR24093,PTHR24093:SF131 KOG0202 3.6.3.8 K01537 GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT4G00900.1 ATECA2,ECA2 ER-type Ca2+-ATPase 2 Cre12.g494800 IDA4,DII1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Flagellar inner arm dynein light chain p28 Flagellar inner arm dynein light chain p28. Previously annotated as IDA4 g12117.t1,IDA4 PF10211 PTHR13183 KOG4001 - K10410 - - - - Cre14.g622700 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 16 - - g15008.t1,Cre14.g622700.t1.1 PF03151 PTHR11132 KOG1441 - - - AT3G17430.1 - Nucleotide-sugar transporter family protein Cre04.g219250 IFT52,BLD1 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 12 Intraflagellar transport protein 52 The BLD1 gene product has been identified as intraflagellar transport protein IFT52. Mutations affecting IFT particle proteins, like IFT52, result in the inability to assemble flagella. IFT particles and the motors moving them are located around the basal g4778.t1,Cre04.g219250.t1.1,BLD1 PF09822 PTHR12969,PTHR12969:SF5 KOG3861 - - - - - - Cre06.g258363 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g5808.t1,Cre06.g258363.t1.1 PF00612 PTHR10588,PTHR10588:SF29 - - - GO:0005515 AT5G22320.2 - Leucine-rich repeat (LRR) family protein Cre06.g309800 MOT2 - 0 13 1.0 1.0 0 13 1.0 1.0 C n - 16 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g7168.t1,MOT2 - - - - - - - - - Cre14.g626634 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 1 - - g15092.t1 PF02676,PF02475,PF08007 PTHR23245 KOG1227 - - - AT4G04670.1 - Met-10+ like family protein / kelch repeat-containing protein Cre08.g376700 MRC1,MRCE1 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 mRNA capping enzyme with dual 5\' triphosphatase and guanylyltransferase activities Catalyzes the first two steps of 5\'-cap addition on mRNAs: removal of the terminal 5\'-phosphate and 5\'-addition of a guanosine residue with formation of a 5\'-ppp-5\' linkage. Although the two activities are found on two separate polypeptides in yeast, they g8872.t1,Cre08.g376700.t1.1,MRC1 PF01331,PF03919,PF00782 PTHR10367:SF0,PTHR10367 KOG2386 2.7.7.50,3.1.3.33 K13917 GO:0004484,GO:0006370,GO:0006397,GO:0006470,GO:0008138 AT5G01290.1 - mRNA capping enzyme family protein Cre11.g482800 STPK5,STK5 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g11986.t1,STK5,STPK5 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT4G14780.1 - Protein kinase superfamily protein Cre11.g476400 MAG1 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g11834.t1,MAG1 PF00730 - - 3.2.2.21 K01247 GO:0006284 AT1G19480.2 - DNA glycosylase superfamily protein Cre03.g197950 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g4100.t1,Cre03.g197950.t1.1 - - - - - - - - - Cre16.g689300 STPK24,STK24,PTK27 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 Serine/Threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK24 and PTK27 (for protein tyrosine kinase) g16181.t1,PTK27,STK24,STPK24 PF07714 PTHR23257 - - - GO:0004672,GO:0006468 AT2G17700.1 - ACT-like protein tyrosine kinase family protein Cre06.g251400 MME6 - 0 1 1.0 nan 0 1 1.0 nan M n - - NADP-dependent malic enzyme NADP-dependent malic enzyme, probably mitochondrial based on Target-P prediction g5630.t1,Cre06.g251400.t1.1 PF00390,PF03949 PTHR23406:SF2,PTHR23406 KOG1257 1.1.1.40 K00029 GO:0016616,GO:0051287 AT5G25880.1 ATNADP-ME3,NADP-ME3 NADP-malic enzyme 3 Cre07.g352750 MRS3 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 Mg2+ transporter protein, CorA-like and putative mitochondrial splicing factor Mg2+ transporter protein, CorA-like and putative mitochondrial pre-mRNA splicing factor g8204.t1,Cre07.g352750.t1.1,MRS3 PF01544 PTHR13890 KOG2662 - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 AT1G16010.1 MGT2,MRS2-1 magnesium transporter 2 Cre03.g143947 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 12 - - g2861.t1,Cre01.g056200.t1.1 - - - - - - - - - Cre02.g075994 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g1362.t1,Cre02.g075994.t1.1 - - - - - - - - - Cre17.g697300 CEP16 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 9 - - g16910.t1,CEP16 PF00112,PF01476 PTHR12411:SF142,PTHR12411 - - - GO:0006508,GO:0008234,GO:0016998 AT3G19400.1 - Cysteine proteinases superfamily protein Cre09.g411850 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g10196.t1 PF03351 PTHR23130,PTHR23130:SF18 KOG4293 - - - AT3G61750.1 - Cytochrome b561/ferric reductase transmembrane with DOMON related domain Cre08.g382590 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9005.t1, g9005.t2 PF00022 PTHR11937,PTHR11937:SF21 KOG0680 - K11662 - AT3G33520.1 ARP6,ATARP6,ESD1,SUF3 actin-related protein 6 Cre11.g467950 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 14 - - g11739.t1 - - - - - - - - - Cre02.g105851 - 0 1 1.0 nan 0 1 1.0 nan - n - 11 - - g2170.t1 - - - - - - - - - Cre13.g607150 CYG57 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 Adenylate/guanylate cyclase Internal domains similar to Guanylyl cyclase, isoform C [Drosophila melanogaster]; similar to adenylate cyclase, type II (EC 4.6.1.1) (ATP pyrophosphate-lyase 2) g14639.t1 PF00211 PTHR11920:SF137,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre02.g093401 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g1763.t1 - - - - - - - - - Cre16.g652800 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g15787.t1,Cre16.g652800.t1.1 - - - - - - - - - Cre05.g244350 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g5247.t1,Cre05.g244350.t1.1 - - - - - - - - - Cre06.g298750 AOT4 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 7 Amino acid transporter Belongs to AAAP family of amino acid/auxin permeases; most similar to plant and fungal relatives g6910.t1,Cre06.g298750.t1.1,AOT4 PF01490 PTHR22950 KOG1303 - - - AT2G41190.1 - Transmembrane amino acid transporter family protein Cre01.g008000 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 11 - - g205.t1,Cre01.g008000.t1.1 PF10469,PF00013 PTHR13360,PTHR13360:SF1 KOG2814 - - GO:0003723 AT3G16230.1 - Predicted eukaryotic LigT Cre06.g258583 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g5814.t1,Cre06.g258583.t1.1 - - - - - - - - - Cre12.g549950 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g13549.t1,Cre12.g549950.t1.1 PF04178 PTHR23137 KOG2887 - - GO:0006810,GO:0016021,GO:0016192 AT5G23550.1 - Got1/Sft2-like vescicle transport protein family Cre06.g250750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g5616.t1,Cre06.g250750.t1.1 PF00443 PTHR24006,PTHR24006:SF54 KOG1871 3.1.2.15 K11842 GO:0004221,GO:0006511 AT4G39910.1 ATUBP3,UBP3 ubiquitin-specific protease 3 Cre07.g345600 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 4 - - g8042.t1 - - - - - - - - - Cre12.g558850 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g13351.t1,Cre12.g558850.t1.1 - - - - - - - - - Cre06.g280100 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g6514.t1,Cre06.g280100.t1.1 PF03188 PTHR15422:SF12,PTHR15422 KOG1619 - - GO:0016021 AT5G38630.1 ACYB-1,CYB-1 cytochrome B561-1 Cre16.g692200 MMP6 - 0 6 1.0 1.0 0 6 1.0 1.0 M n downregulated 15 Metalloproteinase of VMP family Belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoprotein g15634.t1,MMP6 PF05548 - KOG3454 - - - - - - Cre17.g732150 FAP130 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. Probably has 2 alternative transcripts g17694.t1,Cre17.g732150.t1.1 - - - - - - - - - Cre17.g723950 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 14 - - g17509.t1 - - - - - - - - - Cre12.g561602 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g13285.t1 - - - - - - - - - Cre04.g230340 FAP206 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 13 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; overlaps with MOT36 protein identified by comparative genomics as being present only in organisms having motile (MOT) cilia, so using MOT36 as alternative name. FAP206 and MO g5040.t1,Cre83.g796350.t1.1,Cre83.g796350.t1.2 PF12018 PTHR21442 - - - - - - - Cre10.g444150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 16 - - g10921.t1 PF05049 PTHR14143 - - - GO:0005525,GO:0016020,GO:0016817 - - - Cre03.g160600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g3290.t1 PF00320 - - - - GO:0003700,GO:0006355,GO:0008270,GO:0043565 AT5G66320.1 GATA5 GATA transcription factor 5 Cre09.g402034 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g10007.t1 PF05237,PF00899,PF00581 PTHR10953:SF79,PTHR10953 KOG2017 - K11996 GO:0003824 AT5G55130.1 CNX5,SIR1 co-factor for nitrate, reductase and xanthine dehydrogenase 5 Cre14.g608800 SDR24 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g14676.t1,Cre14.g608800.t1.1,SDR24 PF00106 PTHR24314,PTHR24314:SF37 KOG0725 1.1.1.294 K13606 GO:0008152,GO:0016491 AT5G04900.1 NOL NYC1-like Cre16.g680900 RPB1 - 0 1 1.0 nan 0 1 1.0 nan C n - - DNA-directed RNA polymerase II, largest subunit DNA-directed RNA polymerase II largest subunit(EC 2.7.7.6) g16489.t1,Cre16.g680900.t1.1,RPB1 PF04992,PF04998,PF05000,PF04983,PF04997,PF04990,PF05001,PF00623 PTHR19376,PTHR19376:SF14 KOG0260 2.7.7.6 K03006 GO:0003677,GO:0003899,GO:0006351,GO:0005665,GO:0006366 AT4G35800.1 NRPB1,RNA_POL_II_LS,RNA_POL_II_LSRNA_POL_II_LS,RPB1 RNA polymerase II large subunit Cre14.g608200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g14661.t1 - - - - - - AT4G13750.1 NOV Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein Cre12.g502600 SLT1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated 5 Sodium/sulfate co-transporter SAC1-like transporter 1, putative sodium/sulfate co-transporter, transcript is up-regulated during sulfur-deprivation; related to the SAC1 protein which regulates sulfur-deficiency responses [PMID: 16307308] g12519.t1,Cre12.g502600.t1.1 PF03600,PF02080 PTHR10283:SF52,PTHR10283 - - - GO:0015137,GO:0015746,GO:0016021,GO:0055085,GO:0006813,GO:0008324 AT5G47560.1 ATSDAT,ATTDT,TDT tonoplast dicarboxylate transporter Cre02.g083350 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g1533.t1 PF07460 - - - - GO:0004519 - - - Cre02.g083354 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - - - - g1534.t2,Cre02.g083354.t1.1, g1534.t1 PF00664,PF00005 PTHR24221,PTHR24221:SF119 KOG0058 - K05656 GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT1G70610.1 ATTAP1,TAP1 transporter associated with antigen processing protein 1 Cre16.g664350 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated - - - g16039.t1,Cre16.g664350.t1.1 - PTHR10992,PTHR10992:SF20 KOG1454 - - - AT5G38520.1 - alpha/beta-Hydrolases superfamily protein Cre17.g737525 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - - - g17844.t1, g17844.t2 PF01822 PTHR24420,PTHR24420:SF493 KOG2133 - - - AT5G63930.1 - Leucine-rich repeat protein kinase family protein Cre17.g711550 CYCR2 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 13 - - g17233.t1,CYCR2 PF00134 - - - - - - - - Cre08.g360100 DUR2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 Allophanate hydrolase Allophanate hydrolase [EC:3.5.1.54]; catalyses second reaction of ATP:urea amidolyase; homologous to N-terminal domain of yeast protein, whose C-terminal domain (carboxylase activity) is homologous to DUR2, upstream divergent; in green algae, the two acti g8433.t1,Cre08.g360100.t1.1,DUR2 PF01425 PTHR11895,PTHR11895:SF26 KOG1212 - - GO:0016884 AT5G09420.1 ATTOC64-V,MTOM64,TOC64-V translocon at the outer membrane of chloroplasts 64-V Cre05.g235700 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 14 - - g5419.t1,Cre05.g235700.t1.1 PF05184 PTHR11480:SF21,PTHR11480 KOG1340 - - GO:0006629 - - - Cre09.g400293 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 8 - - g9959.t1,Cre02.g137500.t1.1 - - - - - - - - - Cre02.g142186 FTSZ2 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 Plastid division protein FtsZ2 Plastid division protein FtsZ2. Transcription levels were characterized by Adams et al. 2008 [PMID: 18270733] g2757.t1,Cre15.g646150.t1.1,Cre15.g646150.t1.2,FTSZ2 PF00091,PF12327 - - - - GO:0043234,GO:0051258 AT2G36250.1 ATFTSZ2-1,FTSZ2-1 Tubulin/FtsZ family protein Cre17.g697624 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 - - g16919.t1,Cre17.g697624.t1.1 PF01138 PTHR11953 KOG1068 - - - AT4G27490.1 - 3\'-5\'-exoribonuclease family protein Cre03.g203900 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g4238.t2,Cre03.g203900.t1.1, g4238.t1 - - - - - - - - - Cre05.g241450 FTSY - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 4 Chloroplast SRP Receptor Conserved Hypothetical Protein. Similar to the Chloroplast SRP Receptor. Involved in protein import into the Thylakoid. g5566.t1,Cre05.g241450.t1.1,FTSY PF00448,PF02881 PTHR11564,PTHR11564:SF10 - - K03110 GO:0005525,GO:0006614 AT2G45770.1 CPFTSY,FRD4 signal recognition particle receptor protein, chloroplast (FTSY) Cre03.g203300 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g4253.t1 - - - - - - - - - Cre11.g474800 OTA1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 Ornithine transaminase Ornithine-oxo-acid transaminase [EC:2.6.1.13] (ornithine aminotransferase); aminotransferase class III, similar to ornithine aminotransferase from Anopheles (GenBank EAA03164); targeted to mitochondria by homology and also predicted mitochondrial by Targe g11797.t1,Cre11.g474800.t1.1,OTA1 PF00202 PTHR11986,PTHR11986:SF18 KOG1402 2.6.1.13 K00819 GO:0008483,GO:0030170 AT5G46180.1 DELTA-OAT ornithine-delta-aminotransferase Cre09.g398100 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 13 - - g9320.t1 PF00069,PF07714 PTHR23257:SF350,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre09.g398104 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g9882.t1,Cre02.g135250.t1.1,Cre02.g135250.t1.2 PF08241,PF12589 PTHR12734 KOG1541 - - GO:0008152,GO:0008168 AT5G57280.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre08.g383000 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g9018.t2, g9018.t1 PF00847 - - - - GO:0003700,GO:0006355 AT5G60120.1 TOE2 target of early activation tagged (EAT) 2 Cre01.g028500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g651.t1,Cre01.g028500.t1.1 - - - - - - AT5G57460.1 - - Cre17.g736437 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g17813.t1 - - - - - - - - - Cre12.g552006 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g13501.t1, g13501.t2, g13501.t3 - - - - - - - - - Cre17.g740926 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17921.t1 - - - - - - - - - Cre06.g307250 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 - - g7116.t1,Cre06.g307250.t1.1 - - KOG0978 - - - - - - Cre06.g253250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g5676.t1 - PTHR11945:SF51,PTHR11945 - - - - - - - Cre06.g299900 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g6936.t1 - - - - - - - - - Cre14.g627150 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g15102.t2, g15102.t1 PF05670,PF05833 - - - - - - - - Cre03.g199300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g4342.t1,Cre03.g199300.t1.1 PF08327,PF09229 PTHR13009 KOG2936 - - GO:0006950,GO:0001671,GO:0005737,GO:0051087 AT3G12050.1 - Aha1 domain-containing protein Cre12.g503950 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g12490.t1,Cre12.g503950.t1.1 PF03765,PF00650 PTHR10174:SF78,PTHR10174 KOG1471 - - - AT1G22180.2 - Sec14p-like phosphatidylinositol transfer family protein Cre02.g080800 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g1477.t1,Cre02.g080800.t1.1 - - - - - - - - - Cre17.g730550 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g17654.t1,Cre17.g730550.t1.1 PF00759 PTHR22298 - - - GO:0004553,GO:0005975 AT4G11050.1 AtGH9C3,GH9C3 glycosyl hydrolase 9C3 Cre12.g552550 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13487.t1 - - - - - - - - - Cre08.g363450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 9 - - g8514.t1,Cre08.g363450.t1.1 PF02037 - - - - GO:0003676 - - - Cre16.g679109 YEE3 - 0 1 1.0 nan 0 1 1.0 nan C n - - Integral membrane protein Contains 2 DUF395 domains, found in YeeE and YedE from Escherichia coli. These proteins are integral membrane proteins of unknown function. Many of these proteins contain two homologous regions that are represented by this entry. This region contains seve g16765.t1,Cre01.g067650.t1.1,Cre01.g067650.t1.2,YEE3 PF04143 - - - - - - - - Cre03.g178350 FAP272 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Flagellar Associated Protein similar to calmodulin Flagellar Associated Protein similar to calmodulin; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400]. Possibly a phospholipid/glycerol acyltransferase g3693.t1 PF00036 PTHR23050 KOG0027 - - - AT1G66410.1 ACAM-4,CAM4 calmodulin 4 Cre02.g095071 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 13 - - g1845.t1,Cre11.g471250.t1.1 PF04857 PTHR15092 - - - GO:0005634 AT1G55870.1 AHG2,ATPARN Polynucleotidyl transferase, ribonuclease H-like superfamily protein Cre02.g084650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g1562.t1,Cre02.g084650.t1.1 PF03810 PTHR10997:SF7,PTHR10997 KOG1993 - - GO:0006886,GO:0008565 AT3G08960.1 - ARM repeat superfamily protein Cre14.g608300 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g14665.t1,Cre14.g608300.t1.1 - - - - - - - - - Cre06.g279250 PYM1 - 0 1 1.0 nan 0 1 1.0 nan O n - - Exon junction complex protein, PYM homolog Sequence similarity to exon junction complex protein PYM in human. Binds Mago. Previously annotated as PYM1 g6493.t1,Cre06.g279250.t1.1,PYM1 PF09282 PTHR22959 KOG4325 - - GO:0005515 AT1G11400.1 PYM partner of Y14-MAGO Cre03.g177750 MAE10 - 0 6 1.0 1.0 0 6 1.0 1.0 O Y - - - - g3676.t1,MAE10 PF01554 PTHR11206:SF3,PTHR11206 KOG1347 - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT2G21340.1 - MATE efflux family protein Cre04.g215200 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g4667.t1,Cre04.g215200.t1.1 - - - - - - - - - Cre13.g589550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g14463.t1, g14463.t2 - - - - - - - - - Cre04.g214550 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g4683.t1,Cre04.g214550.t1.1 - - - - - - - - - Cre01.g034900 CDPK5 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g788.t1,Cre01.g034900.t1.1,CDPK5 PF00069 PTHR24351,PTHR24351:SF123 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G38910.1 CPK20 calcium-dependent protein kinase 20 Cre04.g222600 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 9 - - g4857.t1,Cre04.g222600.t1.1 PF12499 - - - - - - - - Cre02.g096750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g1966.t1,Cre02.g096750.t1.1 - - - - - - - - - Cre17.g731600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g17682.t1 PF02493 PTHR23084 - - - - AT2G26420.1 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 Cre08.g367350 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 2 - - g8607.t1,Cre08.g367350.t1.1 - PTHR13271 - - - - - - - Cre07.g330700 FAP91 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein similar to sperm protein kinase associated protein AAT1. Found in the flagellar proteome, upregulated by deflagellation [PMID: 15998802]; identified in the flagellar and basal body proteome as FBB8 [PMID: 15137946] g7695.t1,Cre07.g330700.t1.1 PF00612 PTHR22455,PTHR22455:SF10 - - - GO:0005515 - - - Cre05.g239700 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 - - g5528.t1,Cre05.g239700.t1.1 - - - - - - - - - Cre50.g761397 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g18406.t1 PF01472 PTHR22798 - - K07575 GO:0003723 AT1G09150.1 - pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein Cre02.g094450 PHC21 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 14 Cell wall protein pherophorin-C21 Pherophorin-C21 (PHC21) [PMID: 16367971]; partial sequence similar to extracellular matrix protein (cell wall protein) pherophorin-C5 [Genbank entry DQ196111], which belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxy g1786.t1,Cre02.g094450.t1.1,PHC21 PF12499 - KOG3454 - - - - - - Cre14.g631950 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g15229.t1,Cre14.g631950.t1.1 PF01357,PF03330 - - - - - AT3G55500.1 ATEXP16,ATEXPA16,ATHEXP ALPHA 1.7,EXP16,EXPA16 expansin A16 Cre10.g439800 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g10828.t1,Cre10.g439800.t1.1 - - - - - - - - - Cre13.g588201 OPR58,RAP6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 - - g14428.t1,RAP6 PF08373 - - - - - AT2G31890.1 ATRAP,RAP RAP Cre03.g201439 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g4379.t1,Cre19.g752500.t1.1,Cre19.g752500.t1.2 PF03959 PTHR22778 KOG2551 - - - AT1G09280.1 - - Cre03.g160450 PF15,KAT2 - 0 1 1.0 nan 0 1 1.0 nan O n - - Katanin p80 subunit AY597210, PMID: 15302820. Previously annotated as PF15 g3287.t1,Cre03.g160450.t1.1,KAT2,PF15 PF00400 PTHR19845 KOG0279 - - - AT1G61210.1 - Transducin/WD40 repeat-like superfamily protein Cre01.g024500 - 0 16 1.0 1.0 0 16 1.0 1.0 O n - 10 - - g565.t1 - - - - - - - - - Cre01.g008100 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g207.t1,Cre01.g008100.t1.1 - PTHR14493,PTHR14493:SF7 - - - - AT2G41900.1 - CCCH-type zinc finger protein with ARM repeat domain Cre04.g229700 UGP1 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 UDP-glucose pyrophosphorylase UTP:glucose-1-phosphate uridylyltransferase; plays a central role as a glucosyl donor in metabolic pathways; a cytosolic enzyme. The Chlamydomonas sucrose biosynthesis pathway, including this gene, was used in an example of metabolic network analysis by N g5031.t1,Cre04.g229700.t1.1,UGP1 PF01704 PTHR11952,PTHR11952:SF1 KOG2638 2.7.7.9 K00963 GO:0008152,GO:0016779 AT5G17310.2 AtUGP2,UGP2 UDP-glucose pyrophosphorylase 2 Cre02.g143150 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g2622.t1 - - - - - - - - - Cre02.g143151 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g2623.t1,Cre02.g143100.t1.3 PF04130 - - - - GO:0000226,GO:0000922,GO:0005815 - - - Cre06.g271900 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 14 - - g6101.t2, g6101.t1,Cre06.g271900.t1.1 - - - - - - - - - Cre01.g027850 NUOAF2 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g637.t1,NUOAF2 PF08547 PTHR13194,PTHR13194:SF9 - - - - AT4G18810.2 - NAD(P)-binding Rossmann-fold superfamily protein Cre02.g145650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 15 - - g2549.t1 - - - - - - - - - Cre03.g148000 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g3010.t1,Cre03.g148000.t1.1 - - - - - - - - - Cre12.g552100 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 14 - - g13496.t1 - - - - - - - - - Cre12.g529751 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g13043.t1, g13043.t2 - - - - - - - - - Cre10.g422718 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g10458.t1,Cre10.g422718.t1.1 - - - - - - - - - Cre04.g225950 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g4939.t1,Cre04.g225950.t1.1 PF00439 PTHR22881 - - - GO:0005515 AT5G55040.1 - DNA-binding bromodomain-containing protein Cre02.g143487 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g2834.t1,Cre38.g785442.t1.1 - - - - - - - - - Cre07.g322176 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 1 - - g7444.t1 PF04561,PF04565,PF06883,PF04563,PF04560,PF00562 PTHR20856:SF5,PTHR20856 KOG0216 2.7.7.6 K03002 GO:0003677,GO:0003899,GO:0006351,GO:0032549,GO:0005634 AT1G29940.1 NRPA2 nuclear RNA polymerase A2 Cre04.g228350 DLA4 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 18 - - g4996.t1,DLA4 PF00198,PF00364,PF02817 PTHR23151,PTHR23151:SF11 KOG0559 2.3.1.168 K09699 GO:0008152,GO:0008415,GO:0043754,GO:0046949,GO:0048037 AT3G06850.1 BCE2,DIN3,LTA1 2-oxoacid dehydrogenases acyltransferase family protein Cre03.g151800 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g3089.t1,Cre03.g151800.t1.1 - - - - - - - - - Cre14.g613134 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 1 - - g14775.t1,Cre14.g613134.t1.1 PF09273 PTHR13271,PTHR13271:SF7 - - - - AT3G07670.1 - Rubisco methyltransferase family protein Cre17.g707050 SPL12,UAF5 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g17131.t1,Cre17.g707050.t1.1,SPL12,UAF5 PF00076 PTHR15608 KOG1548 - K13093 GO:0003676 AT5G16260.1 ELF9 RNA binding (RRM/RBD/RNP motifs) family protein Cre10.g441800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g10871.t1 - - - - - - - - - Cre17.g712800 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g17260.t1 - - - - - - - - - Cre09.g399073 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g9294.t1,Cre09.g399073.t1.1 PF00657 PTHR14209 KOG3035 - - GO:0006629,GO:0016788 AT5G62930.1 - SGNH hydrolase-type esterase superfamily protein Cre03.g145207 CPLD33 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 Predicted protein Conserved expressed protein g2924.t1,Cre01.g058600.t1.1,CPLD33 - - - - - - AT2G48070.1 RPH1 resistance to phytophthora 1 Cre10.g430250 ELG21 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g10625.t1,Cre10.g430250.t1.1,ELG21 PF03016,PF07974 PTHR11062,PTHR11062:SF12 KOG1021 - - GO:0016020 AT5G61840.1 GUT1 Exostosin family protein Cre10.g443400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g10903.t1 PF00069 - - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre09.g389001 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 16 - - g9520.t1,Cre09.g388950.t1.3 PF00226 - - - - GO:0031072 AT4G37480.1 - Chaperone DnaJ-domain superfamily protein Cre09.g389000 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 14 - - g9519.t1 - - - - - - - - - Cre09.g408051 - 0 12 1.0 1.0 0 12 1.0 1.0 M n - 13 - - g10114.t1,Cre09.g408050.t1.3 PF02536 PTHR13068,PTHR13068:SF3 - - - - AT2G03050.1 EMB93,SOLDAT10 Mitochondrial transcription termination factor family protein Cre01.g003100 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g73.t2, g73.t1 PF00226 PTHR25040,PTHR25040:SF159 - - - GO:0031072 AT2G21510.1 - DNAJ heat shock N-terminal domain-containing protein Cre03.g149750 DMA2 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g3046.t1,Cre03.g149750.t1.1,DMA2 - - KOG3191 - - - - - - Cre13.g571050 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 16 - - g14044.t1 PF01388,PF00505 - KOG0381 - - GO:0003677,GO:0005622 AT1G04880.1 - HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain Cre06.g290500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g6738.t1 PF00069,PF02985,PF00400 PTHR17583 KOG1240 2.7.11.1 K08333 GO:0004672,GO:0005524,GO:0006468,GO:0005515 AT4G29380.1 - protein kinase family protein / WD-40 repeat family protein Cre12.g534800 GCSP - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 6 Glycine cleavage system, P protein Glycine dehydrogenase (decarboxylating). P protein subunit of the glycine cleavage system g13152.t1,GCSP PF02347 PTHR11773 KOG2040 1.4.4.2 K00281 GO:0004375,GO:0055114 AT2G26080.1 AtGLDP2,GLDP2 glycine decarboxylase P-protein 2 Cre10.g459350 OPR49,RAP5 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g11266.t1,RAP5 PF08373 - - - - - AT2G31890.1 ATRAP,RAP RAP Cre01.g025750 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 12 - - g591.t1 PF01551 - - - - - - - - Cre04.g221650 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g4837.t1 PF03989,PF00521 PTHR10169:SF4,PTHR10169 - 5.99.1.3 K02469 GO:0003677,GO:0003916,GO:0005524,GO:0005694,GO:0006265,GO:0003918 AT3G10690.1 GYRA DNA GYRASE A Cre06.g276150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g6190.t2, g6190.t1,Cre06.g276150.t1.1 - - - - - - - - - Cre10.g426050 CTPA1,TCP1,TSP1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 Tail-specific/C-terminal processing peptidase Serine peptidase of the S41 family; homologous to C-terminal processing peptidase, D1 processing peptidase; contains a PDZ domain. Previously annotated as TSP1, but this conflicts with the series of proline tRNA-synthetases g10528.t1,Cre10.g426050.t1.1,TCP1,TSP1 PF00595,PF03572 PTHR23031,PTHR23031:SF7 - - - GO:0005515,GO:0006508,GO:0008236 AT3G57680.1 - Peptidase S41 family protein Cre15.g640550 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15387.t1,Cre15.g640550.t1.1 - - - - - - - - - Cre02.g142353 TSH1 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 4 - - g2646.t1,TSH1 - - - - - - - - - Cre17.g745347 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g18023.t1,Cre20.g759600.t2.1, g18023.t2,Cre20.g759600.t1.1 PF00628 PTHR25475,PTHR25475:SF31 - - - GO:0005515 AT1G05830.1, AT2G31650.1 ATX1,SDG27, ATX2,SDG30 homologue of trithorax, trithorax-like protein 2 Cre04.g227550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g4979.t1 - - - - - - - - - Cre15.g641200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 17 - - g15458.t1,Cre15.g641200.t1.1 PF00153 PTHR24089:SF151,PTHR24089 KOG0753 - - - AT4G03115.1 - Mitochondrial substrate carrier family protein Cre10.g431250 CYG5 - 0 6 1.0 1.0 0 6 1.0 1.0 C n downregulated 18 Adenylate/guanylate cyclase Probable domain of larger protein similar to guanylate cyclase beta-2 chain from Bos taurus XP_587526.2 g10648.t1 PF00211 PTHR11920,PTHR11920:SF150 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre02.g099200 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2018.t1 PF11935,PF12295 PTHR15245:SF10,PTHR15245 - - K06100 - AT5G01400.1 ESP4 HEAT repeat-containing protein Cre01.g022900 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 11 - - g529.t1 - - - - - - - - - Cre03.g157400 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 17 - - g3214.t1,Cre03.g157400.t1.1 - PTHR10217:SF24,PTHR10217 KOG0498 - - - AT5G37500.1 GORK gated outwardly-rectifying K+ channel Cre14.g627700 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g15119.t1 PF01753 PTHR13244 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre50.g761447 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g18407.t1 PF01029,PF01189 PTHR22807:SF12,PTHR22807 KOG1122 2.1.1.- K03500 GO:0003723,GO:0006355 AT3G13180.1 - NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein Cre14.g628702 - 0 15 1.0 1.0 0 15 1.0 1.0 O n - 9 - - g15143.t1 PF11919 - - - K06699 - AT3G13330.1 PA200 proteasome activating protein 200 Cre17.g740261 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - - - g17904.t1 - - - - - - - - - Cre06.g307750 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 16 - - g7126.t1,Cre06.g307750.t1.1 - - - - - - - - - Cre10.g435000 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g10730.t1,Cre10.g435000.t1.1 - - - - - - - - - Cre16.g672833 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g16706.t2, g16706.t1 - - - - - - - - - Cre14.g622410 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14999.t1 PF00078 PTHR19446:SF260,PTHR19446 - - - GO:0003723,GO:0003964,GO:0006278 AT4G20520.1 - RNA binding;RNA-directed DNA polymerases Cre01.g045200 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g1009.t1 PF06351 - - - - GO:0009507,GO:0016853 AT3G25770.1 AOC2 allene oxide cyclase 2 Cre15.g638500 CYC1 - 0 1 1.0 nan 0 1 1.0 nan M n - - Ubiquinol:cytochrome c oxidoreductase cytochrome c1 Cytochrome c1 of ubiquinol:cytochrome c oxidoreductase cytochrome c1 (mitochondrial complex III); mitochondrial pre-apocytochrome c1;[GI:12005507]; gb:AAG44483; PMID: 12589438; = CYT1 from yeast g15442.t1,Cre15.g638500.t1.1 PF02167 PTHR10266 KOG3052 1.10.2.2 K00413 GO:0005506,GO:0009055,GO:0020037 AT3G27240.1 - Cytochrome C1 family Cre18.g748597 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g18088.t1,Cre46.g789050.t1.1 - - - - - - - - - Cre09.g390801 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 15 - - g9678.t1,Cre02.g126150.t1.1 PF04055,PF10105 PTHR11918,PTHR11918:SF41 - - - GO:0003824,GO:0051536 - - - Cre13.g581200 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 13 - - g14275.t1 - - - - - - - - - Cre12.g540800 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g13760.t1,Cre12.g540800.t1.1 - - - - - - - - - Cre13.g580550 HLM20 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 1 - - g14261.t1,Cre13.g580550.t1.1,HLM20 PF00856 PTHR12197,PTHR12197:SF78 - - - GO:0005515 AT1G26760.1 ATXR1,SDG35 SET domain protein 35 Cre07.g350800 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g8161.t1 - - - - - - - - - Cre09.g388838 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g9625.t1,Cre02.g123750.t1.1,Cre02.g123750.t1.2 - - - - - - - - - Cre02.g094200 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 9 - - g1780.t1 PF00083 PTHR24063,PTHR24063:SF155 KOG0253 - - GO:0016021,GO:0022857,GO:0055085 AT3G13050.1 - Major facilitator superfamily protein Cre12.g544662 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - - - g13668.t1,Cre12.g544662.t1.1 - - - - - - - - - Cre02.g098550 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - - - g2004.t1 PF00069 PTHR23257:SF325,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre06.g269752 TRX15 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g6052.t1,Cre06.g269752.t1.1,Cre06.g269750.t1.3,TRX15 PF00085 PTHR10438:SF85,PTHR10438 KOG0907 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT2G33270.1 ACHT3 atypical CYS HIS rich thioredoxin 3 Cre17.g699926 - 0 1 1.0 nan 0 1 1.0 nan SP n - 5 - - g16974.t1 - - - - - - - - - Cre13.g578900 MOT27 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 6 - - g14221.t1,Cre13.g578900.t1.1 - PTHR15157:SF2,PTHR15157 - - - - AT2G45990.1 - - Cre03.g152050 GOX12 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - Glyoxal or galactose oxidase Glyoxal or galactose oxidase; possibly an inactive isoform: may lack the conserved Cys residue whose linkage to Tyr forms the metal-binding radical [PMID: 15581579]; the substrate of this family of oxidases is unsure, as the similarity is to both glyoxal g3094.t1,Cre03.g152050.t1.1,GOX12 PF09118,PF07250 - - - - - AT3G57620.1 - glyoxal oxidase-related protein Cre01.g029900 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 17 - - g679.t1,Cre01.g029900.t1.1 PF01061,PF00005 PTHR19241,PTHR19241:SF86 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT3G55090.1 - ABC-2 type transporter family protein Cre16.g651100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g15751.t1 - - - - - - - - - Cre12.g497700 SNE8 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12631.t1,Cre12.g497700.t1.1,SNE8 PF01370 PTHR10366,PTHR10366:SF9 KOG1502 - - GO:0003824,GO:0044237,GO:0050662 AT1G09510.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre10.g457297 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g11220.t1 - - - - - - - - - Cre03.g194050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g4016.t1,Cre03.g194050.t1.1 - - - - - - - - - Cre10.g432250 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 17 - - g10667.t1 PF00069 PTHR24055,PTHR24055:SF169 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT4G13020.1 MHK Protein kinase superfamily protein Cre07.g343650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g7995.t1 - PTHR23151:SF8,PTHR23151 - - - - - - - Cre11.g469650 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated 15 - - g11788.t3, g11788.t2, g11788.t1 PF07173 - - - - - AT4G37900.1 - Protein of unknown function (duplicated DUF1399) Cre01.g018050 NEF1 - 0 4 1.0 1.0 0 4 1.0 1.0 C Y - 8 - - g425.t1,Cre01.g018050.t1.1,NEF1 - - - - - - AT5G13390.1 NEF1 no exine formation 1 Cre01.g055477 - 0 1 1.0 nan 0 1 1.0 nan M n - 18 - - g1241.t1 PF00069 - - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre07.g356250 CYP23,CYP741A1 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 13 Cytochrome P450, CYP197 superfamily Cytochrome P450, CYP197 superfamily. Previously annotated as CYP741A1 g8282.t1,CYP23 PF00067 PTHR24305 KOG0157 1.14.-.- K00517 GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT3G14610.1 CYP72A7 cytochrome P450, family 72, subfamily A, polypeptide 7 Cre16.g672161 - 0 11 1.0 1.0 0 11 1.0 1.0 C n - 17 - - g16700.t2,Cre01.g065050.t1.1, g16700.t1,Cre01.g065050.t2.1 - - - - - - - - - Cre06.g302450 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 5 - - g7002.t2, g7002.t1 - - - - - - - - - Cre01.g007901 - 0 4 1.0 1.0 0 4 1.0 1.0 M n upregulated 1 - - g203.t1, g203.t3, g203.t2 PF01554 PTHR11206:SF43,PTHR11206 - - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT1G15160.1, AT4G21910.1 - MATE efflux family protein Cre17.g728000 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g17598.t1,Cre17.g728000.t1.1 - - - - - - - - - Cre01.g013550 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g331.t1 - - - - - - - - - Cre06.g266000 DHC3 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Serine/threonine protein kinase - g5971.t1,Cre06.g266000.t1.1 PF00069 PTHR19857,PTHR19857:SF13 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT3G63280.1 ATNEK4,NEK4 NIMA-related kinase 4 Cre06.g257100 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g5777.t1 - - - - - - - - - Cre06.g252550 DLA3 - 0 4 1.0 1.0 0 4 1.0 1.0 M Y - - Dihydrolipoamide acetyltransferase Dihydrolipoamide acetyltransferase; E2 component of pyruvate dehydrogenase complex. Independent sequence at AY596299. g5653.t1 PF00364,PF00198,PF02817 PTHR23151 KOG0557 - - GO:0008152,GO:0008415 AT3G52200.1 LTA3 Dihydrolipoamide acetyltransferase, long form protein Cre06.g267750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g6008.t1,Cre06.g267750.t1.1 PF00089,PF00050 PTHR21312 KOG3627 - - GO:0004252,GO:0006508,GO:0005515 - - - Cre11.g467688 - 0 14 1.0 1.0 0 14 1.0 1.0 O n downregulated 13 - - g11618.t1,Cre18.g744450.t2.1, g11618.t2,Cre18.g744450.t1.1 PF02738,PF01315,PF01799,PF00941,PF00111 PTHR11908 KOG0430 - - GO:0016491,GO:0055114,GO:0046872,GO:0009055,GO:0051536 AT2G27150.1 AAO3,AOdelta,At-AO3,AtAAO3 abscisic aldehyde oxidase 3 Cre11.g467686 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g11616.t2,Cre18.g744550.t2.1, g11616.t1,Cre18.g744550.t1.1 PF05548 - KOG0487 - - - - - - Cre11.g467685 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g11615.t1 - - - - - - - - - Cre11.g467682 - 0 13 1.0 1.0 0 13 1.0 1.0 C n - 17 - - g11612.t1,Cre18.g744750.t1.1 PF03959 PTHR22778 KOG2551 - - - AT4G24380.1 - - Cre11.g467681 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g11611.t1,Cre18.g744800.t1.1 PF00787 - - - - GO:0005515,GO:0007154,GO:0035091 AT4G32160.1 - Phox (PX) domain-containing protein Cre04.g219900 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 18 - - g4795.t1 PF09419 PTHR19288:SF12,PTHR19288 KOG2961 - K07015 - AT3G58830.1 - haloacid dehalogenase (HAD) superfamily protein Cre13.g564200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g13882.t1,Cre13.g564200.t1.1 - - KOG4207 - - - - - - Cre13.g576100 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g14158.t1 PF00069 PTHR24349:SF127,PTHR24349 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre05.g245351 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 16 - - g5227.t1,Cre05.g245259.t1.2 - PTHR11177:SF44,PTHR11177 - - - - - - - Cre05.g245352 - 0 23 1.0 1.0 0 23 1.0 1.0 SP n - 16 - - g5228.t2, g5228.t1 PF00704,PF00059,PF00530 PTHR11177:SF44,PTHR11177 KOG2806 - - GO:0004553,GO:0005975,GO:0005488,GO:0005044,GO:0016020 AT4G19800.1 - Glycosyl hydrolase family protein with chitinase insertion domain Cre04.g217946 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 9 - - g4577.t1,Cre03.g209550.t1.1,Cre03.g209550.t1.2 PF00293 PTHR22769 - - - GO:0016787 - - - Cre04.g217945 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 Fatty acid desaturase Most likely located in the chloroplast or mitochondrion. Identified by comparative genomics as being present only in organisms having motile cilia; gene conserved only in organisms with motile (MOT) cilia g4576.t2,Cre03.g209600.t2.1, g4576.t1,Cre03.g209600.t1.1,Cre03.g209600.t1.2, g4576.t3,Cre03.g209600.t3.1 PF00487 PTHR11351:SF2,PTHR11351 KOG1600 - - GO:0006629,GO:0016491,GO:0055114 AT3G15850.1 ADS3,FAD5,FADB,JB67 fatty acid desaturase 5 Cre04.g217944 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4575.t1,Cre03.g209650.t1.1 - - - - - - - - - Cre04.g217943 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g4574.t1 PF00069 PTHR24362:SF161,PTHR24362 - - - GO:0004672,GO:0005524,GO:0006468 AT3G01090.1 AKIN10,KIN10,SNRK1.1 SNF1 kinase homolog 10 Cre04.g217942 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g4573.t1 - PTHR11351:SF2,PTHR11351 - - - - AT2G26780.1 - ARM repeat superfamily protein Cre04.g217941 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g4572.t1,Cre03.g209700.t1.1 - - - - - - - - - Cre04.g217940 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4571.t1,Cre03.g209750.t1.1,Cre03.g209750.t1.2 PF00069 PTHR24362:SF161,PTHR24362 - - - GO:0004672,GO:0005524,GO:0006468 AT3G44200.1 ATNEK6,IBO1,NEK6 NIMA (never in mitosis, gene A)-related 6 Cre04.g218050 RWP8 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 RWP-RK transcription factor Putative RWP-RK domain transcription factor [PMID: 15785851]; model is tentative g4753.t2,RWP8, g4753.t1,RWP8 PF02042 - - - - - AT5G66990.1 - RWP-RK domain-containing protein Cre07.g333100 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g7748.t1, g7748.t2 - - - - - - - - - Cre03.g186000 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g3854.t1,Cre03.g186000.t1.1 PF08670 - - - - - - - - Cre04.g217949 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 7 - - g4580.t1 PF03407 PTHR10994:SF5,PTHR10994 - - - GO:0005783 AT2G35610.1 XEG113 xyloglucanase 113 Cre03.g187350 TUD1,UNI3 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 Delta tubulin Delta tubulin (TUD)[gi:7441381]. Required for assembly of the basal body/centriole and localizes to the basal body. Previously annotated as UNI3 after the marker locus name g3881.t1,TUD1,UNI3 PF00091 PTHR11588,PTHR11588:SF4 KOG1374 - K10390 GO:0043234,GO:0051258,GO:0005525,GO:0005874,GO:0007017,GO:0005198,GO:0007018 AT5G05620.1 ATGCP2,GCP2,TUBG2 gamma-tubulin complex protein 2 Cre07.g336550 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g7832.t1 - - - - - - - - - Cre06.g290400 HDA5 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 14 - - g6736.t2,HDA5, g6736.t1,HDA5 PF00850 PTHR10625 - - - - AT4G33470.1 ATHDA14,hda14 histone deacetylase 14 Cre16.g659450 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n downregulated 12 - - g15930.t1,Cre16.g659450.t1.1 PF04488 PTHR12042,PTHR12042:SF4 - 2.4.1.- K08251 - AT2G38152.1 - alpha 1,4-glycosyltransferase family protein Cre01.g025100 PGP9 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 4 - - g577.t1,PGP9 PF00702 PTHR18901 - - - GO:0003824,GO:0008152 AT2G33255.1 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre13.g590600 PDE32 - 0 15 1.0 1.0 0 15 1.0 1.0 M n - 17 - - g14483.t1,PDE32, g14483.t2,PDE32, g14483.t3,PDE32, g14483.t4,PDE32, g14483.t5,PDE32 PF00233 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre16.g678200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 13 - - g16551.t1, g16551.t2 PF00903 PTHR10374,PTHR10374:SF0 KOG2944 - - - AT1G80160.1 - Lactoylglutathione lyase / glyoxalase I family protein Cre02.g142166 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 16 - - g2756.t1,Cre15.g646200.t2.1, g2756.t2,Cre15.g646200.t1.1 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre05.g235355 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g5412.t1,Cre05.g235355.t1.1 - - - - - - - - - Cre14.g613300 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 9 - - g14779.t1,Cre14.g613300.t1.1 - - - - - - - - - Cre12.g543550 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 - - g13698.t1 - - - - - - - - - Cre12.g543000 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 14 - - g13709.t1 - - - - - - - - - Cre03.g162750 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 18 - - g3336.t1,Cre03.g162750.t1.1 PF00076 PTHR24012:SF255,PTHR24012 KOG4205 - - GO:0003676 AT4G03110.1 AtRBP-DR1,RBP-DR1 RNA-binding protein-defense related 1 Cre12.g499050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g12604.t1,Cre12.g499050.t1.1 - - - - - - - - - Cre06.g277250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g6214.t1,Cre06.g277250.t1.1 - PTHR24412:SF248,PTHR24412 - - - - - - - Cre14.g620702 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g14958.t1 PF12499 - - - - - - - - Cre12.g530250 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 2 - - g13053.t1 - - - - - - - - - Cre03.g176961 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 9 - - g3658.t1,Cre03.g176961.t1.1 - - - - - - - - - Cre06.g304050 PKC1 - 0 5 1.0 1.0 0 5 1.0 1.0 C n downregulated 14 - - g7040.t1,PKC1 PF00069 PTHR24361,PTHR24361:SF97 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT3G27580.1 ATPK7,D6PKL3 Protein kinase superfamily protein Cre08.g358549 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g8366.t1 - - - - - - - - - Cre16.g691552 NDA1 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 9 Mitochondrial type-II NADH dehydrogenase Mitochondrial NADH dehydrogenase (ubiquinone oxidoreductase). Rotenone-insensitive [PMID: 10571867]. Alternative enzyme to mitochondrial complex I; matrix side of inner membrane [=NDI1]. g16876.t1,Cre01.g072650.t1.1,Cre01.g072650.t1.2,NDA1 PF07992,PF00070 PTHR22915:SF4,PTHR22915 KOG2495 1.6.99.3 K03885 GO:0016491,GO:0050660,GO:0055114 AT2G29990.1 NDA2 alternative NAD(P)H dehydrogenase 2 Cre16.g669452 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g16242.t1 - - - - - - - - - Cre16.g652750 FMO10 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g15786.t1,Cre16.g652750.t1.1,FMO10 PF00743 PTHR23023:SF18,PTHR23023 KOG1399 - - GO:0004499,GO:0050660,GO:0050661,GO:0055114 AT5G45180.1 - Flavin-binding monooxygenase family protein Cre07.g349500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g8131.t1 PF00400 PTHR15574,PTHR15574:SF17 KOG0316 - - - AT5G10940.2 - transducin family protein / WD-40 repeat family protein Cre08.g383450 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g9027.t1 PF08495 - - - - - - - - Cre02.g116400 DII7,FAP120 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Flagellar Associated Protein Flagellar Associated Protein with ankyrin repeats, found in the flagellar proteome [PMID: 15998802]. Characterized by Ikeda et al. 2008 [PMID: 19021242]. Previously annotated as FAP120 g2409.t1,FAP120 PF00023 PTHR24198:SF302,PTHR24198 KOG4412 - - GO:0005515 AT2G03430.1 - Ankyrin repeat family protein Cre01.g003376 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 2 - - g78.t1 PF00249,PF00226 PTHR24078:SF29,PTHR24078 KOG0724 - K09522 GO:0031072 AT5G06110.1 - DnaJ domain ;Myb-like DNA-binding domain Cre09.g394732 MOT3 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g9790.t1,Cre02.g131050.t1.1,MOT3 - - - - - - - - - Cre03.g207000 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g4170.t1,Cre03.g207000.t1.1 - - - - - - AT1G67080.1 ABA4 abscisic acid (aba)-deficient 4 Cre16.g655900 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g15855.t1,Cre16.g655900.t1.1 PF04072 - - - - GO:0008168 - - - Cre12.g493700 ZXE2 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 6 - - g12076.t1,Cre12.g493700.t1.1,ZXE2 PF01494 PTHR13789,PTHR13789:SF69 KOG2614 - - GO:0004497,GO:0055114 AT2G29720.1 CTF2B FAD/NAD(P)-binding oxidoreductase family protein Cre14.g617550 DLE3,ODA14 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Outer dynein arm-docking complex subunit 3, DC3 Flagellar outer dynein arm-docking complex subunit 3 (ODA-DC3). Contains calcium-binding EF-hand. Previously annotated as ODA14 g14879.t1,Cre14.g617550.t1.1,ODA14 - PTHR10891 KOG0027 - - - AT2G27030.3 ACAM-2,CAM5 calmodulin 5 Cre02.g110800 - 0 11 1.0 1.0 0 11 1.0 1.0 C n - 7 - - g2274.t1,NRT2.6 - PTHR24003,PTHR24003:SF117 - - - - AT1G08090.1 ACH1,ATNRT2.1,ATNRT2:1,LIN1,NRT2,NRT2.1,NRT2:1,NRT2;1AT nitrate transporter 2:1 Cre09.g403145 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g10038.t1,Cre02.g120750.t1.1 - - - - - - - - - Cre16.g679557 FAS5 - 0 1 1.0 nan 0 1 1.0 nan SP n - - Fasciclin-like protein Protein contains the fasciclin FAS1 domain (= BIgH3 domain), which is an extracellular module of about 140 amino acid residues; it has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals; similar to g16769.t1,Cre01.g067850.t1.1,Cre01.g067850.t1.2,FAS5 PF02469 PTHR10900 - - - - - - - Cre16.g679550 FAP277 - 0 10 1.0 1.0 0 10 1.0 1.0 M n upregulated 12 Flagellar Associated Protein, protease inhibitor-like Flagellar Associated Protein similar to protease inhibitor; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g16519.t1 PF00079 PTHR11461,PTHR11461:SF71 KOG2392 - - GO:0004867 AT2G25240.1 - Serine protease inhibitor (SERPIN) family protein Cre07.g320500 OPR29 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 18 - - g7411.t1,Cre07.g320500.t1.1 - - - - - - - - - Cre13.g591550 SRR20 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g14505.t1,SRR20 PF00530 PTHR19331,PTHR19331:SF366 - - - GO:0005044,GO:0016020 - - - Cre03.g182200 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 17 - - g3776.t1 - PTHR11795:SF296,PTHR11795 - - - - - - - Cre08.g379600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g8937.t1 PF00069,PF07714 PTHR23257:SF294,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT4G35780.1 - ACT-like protein tyrosine kinase family protein Cre03.g181450 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g3760.t1 PF07773 - - - - - - - - Cre18.g748697 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 8 - - g18090.t1,Cre46.g789000.t1.1 PF03385 - - - - - AT3G57420.1 - Protein of unknown function (DUF288) Cre19.g750697 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g18131.t1,Cre33.g782674.t1.1,Cre33.g782674.t1.2 PF08373 - - - - - - - - Cre06.g276450 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g6197.t2, g6197.t1 - PTHR11935 - - - - AT1G06130.1 GLX2-4 glyoxalase 2-4 Cre11.g480060 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g11916.t1,Cre11.g480060.t1.1 PF00929 PTHR12801 KOG2249 3.1.-.- K01175 - AT3G15080.1 - Polynucleotidyl transferase, ribonuclease H-like superfamily protein Cre14.g618300 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 12 - - g14895.t1 - - - - - - - - - Cre19.g751347 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 Exportin-7-related Ran binding protein Exportin-7-related Ran binding protein. Previously annotated as MOT46, a gene model that fuses this model with Au9.Cre33.g782200; MOT46 was dentified by comparative genomics as being present only in organisms having motile (MOT) cilia g18146.t1,Cre33.g782100.t1.1 - PTHR12596 - - - - AT5G06120.1 - ARM repeat superfamily protein Cre03.g195150 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 18 - - g4041.t1 - - - - - - - - - Cre06.g307500 LCIC - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 4 Low-CO2 inducible protein Low-CO2 inducible protein (identical to BAD16683 [GI:46409059; PMID: 15235119]; homologous to LCIB; differentially expressed in Volvox regA mutant, impaired in somatic differentiation; TargetP prediction: Chloroplast (confidence: 2). Regulated by CCM1 [PM g7121.t1 - - - - - - - - - Cre04.g231418 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g5051.t1,Cre32.g781600.t1.1,Cre32.g781600.t1.2 - - - - - - - - - Cre10.g438200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g10794.t1,Cre10.g438200.t1.1 PF00097 - - - - - AT1G67180.1 - zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein Cre07.g346850 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8071.t1,Cre07.g346850.t1.1 - - - - - - - - - Cre10.g425600 PGM15 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 11 - - g10518.t1,PGM15, g10518.t2,PGM15 PF00702 PTHR18901 - - - GO:0003824,GO:0008152 AT1G56500.1 - haloacid dehalogenase-like hydrolase family protein Cre07.g347100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g8078.t1,Cre07.g347100.t1.1 PF01263 PTHR11122 KOG1594 5.1.3.15 K01792 GO:0005975,GO:0016853 AT5G57330.1 - Galactose mutarotase-like superfamily protein Cre12.g536000 ALA2 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 ATPase, aminophospholipid transporter Phospholipid-translocating P-type ATPase, flippase g13182.t1,Cre12.g536000.t1.1,ALA2 PF00702,PF00122 PTHR24092:SF18,PTHR24092 KOG0206 3.6.3.1 K01530 GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT1G59820.1 ALA3 aminophospholipid ATPase 3 Cre07.g326050 KIL8 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 10 - - g7583.t1,KIL8 PF00225 PTHR24115,PTHR24115:SF313 - - - GO:0003777,GO:0005524,GO:0007018 AT4G05190.1 ATK5 kinesin 5 Cre09.g389763 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g9650.t1,Cre02.g124900.t1.1,Cre02.g124900.t1.2 - - - - - - AT5G25265.1 - - Cre10.g423600 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 11 - - g10477.t1 PF00400 PTHR19879 KOG0266 - - - AT5G67320.1 HOS15 WD-40 repeat family protein Cre03.g179350 MFT16 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g3712.t1,Cre03.g179350.t1.1,MFT16 PF07690 PTHR16172,PTHR16172:SF2 - - - GO:0016021,GO:0055085 - - - Cre03.g185850 CPK2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 3 - - g3851.t1,CPK2 PF00294 PTHR10584,PTHR10584:SF26 KOG2854 - - - AT4G27600.1 NARA5 pfkB-like carbohydrate kinase family protein Cre15.g635950 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 17 - - g15340.t2, g15340.t1 PF01457 - - - - GO:0004222,GO:0006508,GO:0007155,GO:0008270,GO:0016020 - - - Cre02.g084100 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g1550.t1,Cre02.g084100.t1.1 - PTHR23125 - - - - AT1G80630.1 - RNI-like superfamily protein Cre16.g650625 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 18 - - g15741.t1 PF02897,PF00326 PTHR11757 - - - GO:0004252,GO:0006508,GO:0008236 AT1G50380.1 - Prolyl oligopeptidase family protein Cre06.g287000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g6667.t1,Cre06.g287000.t1.1 PF05042 - - - - - AT4G26740.1 ATPXG1,ATS1,CLO1 seed gene 1 Cre13.g585250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g14366.t1 PF08005,PF02214 PTHR14499,PTHR14499:SF26 - - - GO:0005249,GO:0006813,GO:0008076,GO:0016020 AT5G55000.2 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein Cre03.g184450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g3822.t1 PF00069 PTHR24349:SF100,PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G20470.1 - AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Cre16.g654750 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g15828.t1,Cre16.g654750.t1.1 - - - - - - - - - Cre09.g399650 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g9281.t2, g9281.t1 - - - - - - - - - Cre08.g364850 AC115 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 - - g8543.t1 PF03747 - - - - - - - - Cre11.g477250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g11851.t1 PF10187 - KOG4036 - - - AT3G62140.1 - - Cre12.g511100 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g12326.t1 PF04280 - - - - GO:0005744,GO:0006886,GO:0015450 - - - Cre06.g275150 CGL69,TGL11 - 0 1 1.0 nan 0 1 1.0 nan O Y - - Triacylglycerol lipase Conserved protein with lipase motif; def triacylglycerol lipase - cd00519, Lipase_3, Lipase (class 3) g6170.t1,Cre06.g275150.t1.1,TGL11 PF01764 PTHR21493,PTHR21493:SF24 - - - GO:0004806,GO:0006629 AT3G07400.1 - lipase class 3 family protein Cre02.g103950 FAP100 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g2126.t1,Cre02.g103950.t1.1 - PTHR21683 - - - - - - - Cre16.g671800 PGA8 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g16691.t1,Cre16.g671800.t1.1,PGA8 - - - - - - - - - Cre17.g705450 LCI26 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 15 Low-CO2-induced U-box protein Contains Ubox (smart00504), Modified RING finger domain; Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. SOSUI prediction: 5 transmembrane region. Low-CO2 inducible gen g17098.t1,Cre17.g705450.t1.1 PF04564 PTHR22904,PTHR22904:SF170 - - - GO:0000151,GO:0004842,GO:0016567 AT5G61560.1 - U-box domain-containing protein kinase family protein Cre08.g362250 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g8484.t1 - - - - - - - - - Cre14.g616376 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g14849.t1 - - - - - - - - - Cre03.g191350 - 0 18 1.0 1.0 0 18 1.0 1.0 O n - 9 - - g3960.t1 PF00005 PTHR19229:SF68,PTHR19229 - - - GO:0005524,GO:0016887 AT2G41700.1 ABCA1,AtABCA1 ATP-binding cassette A1 Cre17.g737100 FAP127 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 Flagellar Associated Protein Found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation g17829.t1,Cre17.g737100.t1.1 - PTHR19265 - - - - - - - Cre10.g421600 TST2 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 17 - - g10433.t1,Cre10.g421600.t1.1,TST2 PF03129,PF00587,PF07973 PTHR11451:SF5,PTHR11451 KOG1637 6.1.1.3 K01868 GO:0004812,GO:0005524,GO:0006412,GO:0000166,GO:0005737,GO:0006418,GO:0016876,GO:0043039 AT2G04842.1 EMB2761 threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative Cre16.g694300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 11 - - g15586.t1,Cre16.g694300.t1.1 - - - - - - - - - Cre15.g634600 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 7 - - g15301.t1 PF00023 PTHR24188 KOG4214 - - GO:0005515 AT5G66055.1 AKRP,EMB16,EMB2036 ankyrin repeat protein Cre09.g387100 CGL12 - 0 1 1.0 nan 0 1 1.0 nan C Y - 14 Predicted protein Conserved expressed protein g9563.t1 - PTHR10343 - - - - AT5G39790.1 - 5\'-AMP-activated protein kinase-related Cre01.g046800 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g1040.t1 - - - - - - - - - Cre05.g239850 PHO4,PHOD - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - - Alkaline phosphatase Similar to phosphate-deficiency inducible alkaline phosphatase/phosphodiesterase, APaseD, encoded by phoD, from Bacillus subtilis. Previously annotated as PHOD g5531.t1,PHO4,PHOD, g5531.t3,PHO4,PHOD, g5531.t2,PHO4,PHOD PF09423 - - - - - - - - Cre09.g407050 MMP24 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - - - - g10091.t1,Cre09.g407050.t1.1,MMP24 PF05548 - - - - - - - - Cre08.g367150 MFT23 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 - - g8603.t1,MFT23, g8603.t2,MFT23 PF07690 PTHR24003,PTHR24003:SF271 - - - GO:0016021,GO:0055085 - - - Cre15.g637552 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g15376.t2, g15376.t1 - - - - - - AT2G10940.1 - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Cre05.g232750 CNK4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - NimA-related protein kinase NimA-(never-in-mitosis) related protein kinase homolog 4 [gi:34334397, PMID: 15068267] g5119.t1,Cre05.g232750.t1.1,CNK4 PF00069 PTHR24362,PTHR24362:SF147 KOG0591 - - GO:0004672,GO:0005524,GO:0006468 AT3G20860.1 ATNEK5,NEK5 NIMA-related kinase 5 Cre09.g396549 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 - - g9839.t1,Cre02.g133200.t1.1 PF00023 - - - - GO:0005515 AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre17.g703800 DUR5,DUR3C,DUR32 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Urea active transporter Na+/solute symporter. Previously annotated as DUR3C g17062.t1,DUR5,DUR3C PF00474 PTHR11819,PTHR11819:SF15 KOG2348 - - GO:0005215,GO:0006810,GO:0016020,GO:0055085 AT5G45380.1 ATDUR3,DUR3 solute:sodium symporters;urea transmembrane transporters Cre03.g177826 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g3678.t1 - - - - - - - - - Cre13.g604905 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 18 - - g14591.t1,Cre13.g604905.t1.1 - - - - - - - - - Cre12.g504900 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 1 - - g12470.t1 PF00646 - - - - GO:0005515 - - - Cre13.g577300 GOX13 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - Glyoxal or galactose oxidase The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate g14186.t1,Cre13.g577300.t1.1,GOX13 PF09118,PF07250 - - - - - AT1G67290.1 - glyoxal oxidase-related protein Cre12.g491550 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g12154.t1,Cre12.g491550.t1.1 - - - - - - - - - Cre02.g092451 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g1733.t1,Cre02.g092450.t1.3 - - - - - - - - - Cre01.g000100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g5.t1 - - - - - - - - - Cre08.g365600 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g8565.t1,Cre08.g365600.t1.1 PF08543,PF03070,PF02581 PTHR20858:SF3,PTHR20858 KOG2598 2.5.1.3,2.7.1.49,2.7.4.7 K14153 GO:0004789,GO:0009228 AT1G22940.1 TH-1,TH1,THIE thiamin biosynthesis protein, putative Cre16.g655150 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g15837.t1,Cre16.g655150.t1.1 PF00805 PTHR14136 - - - - AT5G53490.3 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre10.g454025 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 - - g11148.t2,Cre10.g454050.t1.3, g11148.t3,Cre10.g454050.t3.1, g11148.t1,Cre10.g454050.t2.1 PF04695 - - - - GO:0005777,GO:0016020 AT5G62810.1 ATPEX14,PED2,PEX14 peroxin 14 Cre03.g190000 PPP14 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g3934.t1,Cre03.g190000.t1.1,PPP14 PF00481 PTHR13832 KOG0698 - - GO:0003824 AT3G17250.1 - Protein phosphatase 2C family protein Cre06.g274600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g6158.t1,Cre06.g274600.t1.1 - - - - - - - - - Cre14.g631200 DII6,IC97,FAP94 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. Identified as IC97 and characterized by Wirschell et al. 2009 [PMID: 19420136]. Previously annotated as FAP94 g15213.t1,Cre14.g631200.t1.1,FAP94,IC97 - PTHR20929:SF11,PTHR20929 - - - - - - - Cre02.g147850 HSLU2,HUV2 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 18 ATP-dependent subunit of mitochondrial HslUV protease Similar to eubacterial ClpY (HslU), ATP-dependent subunit of the HslUV protease; probably mitochondrial, because of TargetP prediction and presence of a peptide in the mitochondrial proteome survey g2504.t1,Cre02.g147850.t1.1,HUV2 PF07724,PF10431 PTHR11262:SF3,PTHR11262 KOG0745 - - GO:0005524,GO:0005737,GO:0009376,GO:0016887,GO:0070011 AT1G33360.1 - ATP-dependent Clp protease Cre16.g648900 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g15703.t1 PF02696 PTHR12153:SF18,PTHR12153 KOG2542 - - - AT5G13030.1 - - Cre10.g420550 CTPA4,TSP4 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g10407.t1,TSP4 PF00595,PF03572 PTHR18868:SF10,PTHR18868 - - - GO:0005515,GO:0006508,GO:0008236 AT4G17740.1 - Peptidase S41 family protein Cre17.g735500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g17793.t1,Cre17.g735500.t1.1 - - - - - - - - - Cre08.g385500 AMYA1,AMA1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 Alpha-amylase Alpha-amylase. Previously annotated as AMYA1 g9070.t2,AMA1, g9070.t1,Cre08.g385500.t1.1,AMA1 PF07821,PF00128 PTHR10357:SF9,PTHR10357 - - - GO:0004556,GO:0005509,GO:0005975,GO:0003824,GO:0043169 AT1G69830.1 AMY3,ATAMY3 alpha-amylase-like 3 Cre06.g250050 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g5600.t1 - - - - - - - - - Cre06.g277550 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 12 - - g6220.t1,Cre06.g277550.t1.1 - PTHR23088 - - - - - - - Cre02.g143350 PDE6 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 3\',5\'-cyclic-nucleotide phosphodiesterase 3\',5\'-cyclic-nucleotide phosphodiesterase. Similarity restricted to carboxy terminus. Most similar to PDE1 C of mouse g2617.t1,PDE6 PF00233,PF03924 PTHR11347:SF75,PTHR11347 - 3.1.4.17 K01120 GO:0004114,GO:0007165 - - - Cre14.g616400 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g14850.t1,Cre14.g616400.t1.1 PF00011 PTHR11527 - - - - AT1G54050.1 - HSP20-like chaperones superfamily protein Cre04.g223750 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g4883.t1 PF00612 PTHR13140 - - - GO:0005515 AT5G43900.3 ATMYA2,MYA2,XI-2,XI-6 myosin 2 Cre16.g667729 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g16284.t1, g16284.t2,Cre16.g667729.t1.1 - - - - - - - - - Cre08.g366200 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g8581.t1 PF05546 - - - - - - - - Cre17.g708250 ARL8 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 ARF-related small GTPase Expressed Protein. Similar to the ARL8-type GTPases, involved in vesicle trafficking. Called ARLA in Arabidopsis g17160.t2,ARL8, g17160.t1,Cre17.g708250.t1.1,ARL8 PF00025 PTHR11711,PTHR11711:SF20 KOG0075 - K07955 GO:0005525 AT5G67560.1 ARLA1D,ATARLA1D ADP-ribosylation factor-like A1D Cre05.g233400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g5105.t1 - PTHR24362,PTHR24362:SF143 - - - - - - - Cre05.g233402 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g5076.t2, g5076.t1 - - - - - - - - - Cre17.g722100 SSA3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Predicted protein Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA) g17469.t3,SSA3, g17469.t2,SSA3, g17469.t1,SSA3 PF04727 PTHR12771,PTHR12771:SF2 - - - GO:0005856,GO:0006909 AT3G60260.3, AT2G44770.1 - ELMO/CED-12 family protein Cre02.g086887 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 8 - - g1613.t3,Cre02.g086950.t3.1, g1613.t1,Cre02.g086950.t1.2, g1613.t2,Cre02.g086950.t2.1 PF04096, PF12110,PF04096, PF12110 PTHR12347,PTHR12347:SF13 - - K14297 GO:0005643,GO:0006810 AT1G10390.1, AT1G80680.1 MOS3,NUP96,PRE,SAR3 Nucleoporin autopeptidase, SUPPRESSOR OF AUXIN RESISTANCE 3 Cre02.g095104 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 2 - - g1877.t1,Cre11.g472600.t1.1 PF08243 PTHR22691,PTHR22691:SF11 - - - - AT4G37860.1 - SPT2 chromatin protein Cre02.g095107 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g1880.t1 PF04142 PTHR10231,PTHR10231:SF6 - - - GO:0000139,GO:0005351,GO:0008643,GO:0016021 AT2G43240.1 - Nucleotide-sugar transporter family protein Cre02.g095106 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 11 - - g1879.t1,Cre11.g472700.t1.1,Cre11.g472700.t1.2 PF01066 PTHR14269 - - - GO:0008654,GO:0016020,GO:0016780 AT3G55030.1 PGPS2 phosphatidylglycerolphosphate synthase 2 Cre13.g579300 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated - - - g14231.t1 - - - - - - - - - Cre02.g095103 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g1876.t1,Cre11.g472550.t1.1,Cre11.g472550.t1.2 PF05686 PTHR12203 KOG2458 - - - - - - Cre02.g095102 VPS5C - 0 10 1.0 1.0 0 10 1.0 1.0 O n downregulated 13 Subunit of Retromer complex Expressed Protein. Similar to VPS5/SNX1, component of Retromer Coat complex involved in endosomal to Golgi trafficking. g1875.t1,Cre11.g472500.t1.1,Cre11.g472500.t1.2,VPS5C PF00787 PTHR10555:SF73,PTHR10555 KOG2273 - - GO:0005515,GO:0007154,GO:0035091 AT5G58440.1 SNX2a sorting nexin 2A Cre06.g263176 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g5912.t1 - - - - - - - - - Cre01.g007450 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g193.t1 PF00153 PTHR24089:SF152,PTHR24089 - - - - AT1G34065.1 SAMC2 S-adenosylmethionine carrier 2 Cre02.g094850 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 10 - - g1794.t1 - - KOG3262 - - - - - - Cre13.g568025 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g13977.t1,Cre13.g568009.t1.2 PF08991 PTHR15590 - - - - AT1G09794.1 - Cox19 family protein (CHCH motif) Cre07.g316350 CSG1 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Predicted protein of CSG family Function unknown, no known homologue, except in Volvox; belongs to a small family of Chlamydomonas specific proteins, all located on chomosome VII (scaffolds 6 and 16) g7314.t1,Cre07.g316350.t1.1,CSG1 - - - - - - - - - Cre09.g403750 HAD6 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 4 - - g9186.t1,HAD6 PF00702 PTHR12725:SF5,PTHR12725 KOG3085 - - GO:0003824,GO:0008152 AT2G41250.1 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre09.g389578 PSBP5 - 0 7 1.0 1.0 0 7 1.0 1.0 C n upregulated 4 Thylakoid-anchored PsbP-like protein Shows similarity to PSBP (OEE2, oxygen-evolving enhancer protein 2 of photosystem II, OEC23, 23 kDa subunit of oxygen evolving complex : PMID: 3468511); orthologous to At3g05410; targeted to thylakoid lumen by TAT pathway, but absence of AXA cleavage site g9645.t1,Cre02.g124650.t1.1,PSBP5 PF01789 - - - - GO:0005509,GO:0009523,GO:0009654,GO:0015979,GO:0019898 AT3G05410.2 - Photosystem II reaction center PsbP family protein Cre15.g637602 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g15377.t1 - - - - - - AT2G10940.1 - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Cre09.g394050 CPLD19 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 9 Predicted protein Conserved expressed protein in the zinc finger family g9407.t1,Cre09.g394050.t1.1 PF01529 PTHR22883 KOG1315 - - GO:0008270 AT3G60800.1 - DHHC-type zinc finger family protein Cre12.g515901 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 9 - - g12727.t1,Cre12.g515901.t1.1 - - - - - - - - - Cre12.g515900 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 10 - - g12726.t1,Cre12.g515900.t1.1 PF00533 PTHR13561:SF6,PTHR13561 - - K10728 GO:0005622 AT1G77320.1 MEI1 transcription coactivators Cre17.g746947 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 15 - - g18055.t1,Cre20.g758250.t1.1 - - KOG3091 - - - - - - Cre12.g501850 FFT1 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - - - g12536.t1,FFT1 PF00251 - - - - - AT1G55120.1 AtcwINV3,ATFRUCT5,FRUCT5 beta-fructofuranosidase 5 Cre08.g367100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g8602.t1 - - - - - - - - - Cre10.g452850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g11121.t1 - - - - - - - - - Cre04.g226950 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g4968.t1,Cre04.g226950.t1.1 - PTHR12651 KOG3129 - - - AT5G57950.1 - 26S proteasome regulatory subunit, putative Cre17.g723850 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 17 - - g17507.t1,Cre17.g723850.t1.1 PF06775 - - - - - - - - Cre02.g102776 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g2099.t1 - - - - - - - - - Cre03.g145087 MTP1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Cation efflux transporter, membrane protein Putative Zn transporter, CDF family, related to plant zinc transporters, related to the plant MTP1, PMID: 15710683 g2918.t1,Cre01.g058300.t1.1,Cre01.g058300.t1.2,MTP1 PF01545 PTHR11562 - - - GO:0006812,GO:0008324,GO:0016021,GO:0055085 AT2G46800.1 ATCDF1,ATMTP1,MTP1,ZAT,ZAT1 zinc transporter of Arabidopsis thaliana Cre12.g487850 ARL11,CGL49 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - - ARF/SAR superfamily small monomeric GTP binding protein Expressed Protein. Similar to the ArfB-type GTPase, involved in vesicle trafficking in the late secretory system g12230.t1,Cre12.g487850.t1.1,ARL11 PF00025 PTHR11711 KOG0070 - K07977 GO:0005525 AT5G17060.1 ARFB1B,ATARFB1B ADP-ribosylation factor B1B Cre04.g224883 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated - - - g4912.t1,Cre15.g644600.t1.1,Cre15.g644600.t1.2 - - - - - - - - - Cre03.g204465 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 15 - - g4406.t2,Cre19.g753700.t3.1, g4406.t3,Cre19.g753700.t1.1, g4406.t1,Cre19.g753700.t2.1 PF05686 PTHR12203 - - - - AT3G61280.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre17.g744547 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - - - g18007.t1,Cre20.g760150.t1.1,Cre20.g760150.t1.2 - - - - - - - - - Cre16.g649550 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g15717.t1 - - - - - - - - - Cre04.g220500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g4810.t1,Cre04.g220500.t1.1 - - - - - - - - - Cre04.g225750 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 1 - - g4933.t2, g4933.t1 PF06437 - - - - GO:0000287,GO:0009117,GO:0016791 - - - Cre14.g623125 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g15018.t1 - - - - - - - - - Cre09.g397623 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g9869.t1,Cre02.g134600.t1.1,Cre02.g134600.t1.2 - - - - - - - - - Cre15.g636100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g15346.t1, g15346.t3, g15346.t2 - - - - - - - - - Cre17.g725450 - 0 14 1.0 1.0 0 14 1.0 1.0 M n - 16 - - g17545.t1 - PTHR13129 - - K11789 - AT4G31160.1 DCAF1 DDB1-CUL4 associated factor 1 Cre04.g221450 - 0 1 1.0 nan 0 1 1.0 nan M n - 18 - - g4833.t1,Cre04.g221450.t1.1 PF12499 - - - - - - - - Cre03.g199400 ORC2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 Origin recognition complex subunit 2 Homologous to eukaryotic ORC2, DNA replication control protein g4340.t1,ORC2 PF04084 PTHR14052 KOG2928 - K02604 GO:0000808,GO:0005634,GO:0006260 AT2G37560.1 ATORC2,ORC2 origin recognition complex second largest subunit 2 Cre10.g451500 SRR28,CHI5 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Chitinase-like hydrolase Chitinase-like hydrolase. Scavenger receptor cysteine-rich protein with multiple C-type lectin domains and a glycoside hydrolase family 18 domain. Very large protein. Part of a group of 4 homologous proteins. Previously annotated as SRR28 g11095.t1,Cre10.g451500.t1.1,CHI5,SRR28 PF00530 PTHR11177:SF44,PTHR11177 - - - GO:0005044,GO:0016020 - - - Cre12.g500100 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g12574.t1,Cre12.g500100.t1.1 - - - - - - - - - Cre10.g431050 SRR13 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 11 Speract/scavenger receptor, transmembrane glycoprotein Speract/scavenger receptor cysteine-rich (SRCR) family protein, transmembrane glycoprotein g10643.t2,SRR13, g10643.t1,SRR13 PF00530,PF00059 PTHR19331,PTHR19331:SF422 - 3.4.21.- K09624 GO:0005044,GO:0016020,GO:0005488 - - - Cre16.g683147 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g16801.t1,Cre01.g069300.t1.1 - - - - - - - - - Cre09.g402800 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 11 - - g9205.t1 - - - - - - - - - Cre14.g630982 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g15205.t1,Cre14.g630982.t1.1 - - - - - - - - - Cre01.g017250 FKB99 - 0 1 1.0 nan 0 1 1.0 nan SP Y - 11 - - g409.t1,Cre01.g017250.t1.1 - - - - - - - - - Cre09.g389689 ASD1 - 0 1 1.0 nan 0 1 1.0 nan C n - 3 Aspartate semialdehyde dehydrogenase Aspartate semialdehyde dehydrogenase. Previously annotated as ASSD1 g9648.t1,Cre02.g124800.t1.1,Cre02.g124800.t1.2,ASD1 PF01118,PF02774 PTHR10174 KOG4777 1.2.1.11 K00133 GO:0005737,GO:0006520,GO:0016620,GO:0051287,GO:0008652,GO:0046983 AT1G14810.1 - semialdehyde dehydrogenase family protein Cre07.g324000 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g7484.t1,Cre07.g324000.t1.1 - - - - - - AT1G33410.2 ATNUP160,NUP160,SAR1 SUPPRESSOR OF AUXIN RESISTANCE1 Cre06.g300250 TTL10 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g6946.t1,TTL10 PF03133 PTHR12241,PTHR12241:SF52 - - - GO:0004835,GO:0006464 AT1G77550.1 - tubulin-tyrosine ligases;tubulin-tyrosine ligases Cre02.g092400 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g1732.t1 PF02136 PTHR10693 KOG0116 - - GO:0005622,GO:0006810 AT5G48650.1 - Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Cre15.g639650 OPR92,RAP24 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g15410.t1,RAP24 - - - - - - - - - Cre02.g099950 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g2035.t1,Cre02.g099950.t1.1 - - - - - - - - - Cre07.g354850 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 15 - - g8254.t1,Cre07.g354850.t1.1 - - - - - - - - - Cre06.g264250 FAO6 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 6 - - g5937.t1,FAO6 - PTHR10668 - - K14606 - AT2G32640.1 - Lycopene beta/epsilon cyclase protein Cre17.g747597 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g18068.t1,Cre20.g757800.t1.1 - - - - - - - - - Cre03.g163450 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g3351.t1,Cre03.g163450.t1.1 - - - - - - AT4G33380.1 - - Cre14.g628850 CYG26 - 0 5 1.0 1.0 0 5 1.0 1.0 C n downregulated 15 Adenylate/guanylate cyclase Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g15146.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre13.g603900 TSF1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 - - g14572.t1,Cre13.g603900.t1.1,TSF1 PF03483,PF03484 PTHR10947 KOG2472 6.1.1.20 K01890 GO:0003723,GO:0004826,GO:0006412,GO:0000287,GO:0005524,GO:0006432 AT1G72550.1 - tRNA synthetase beta subunit family protein Cre09.g398734 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g9900.t1,Cre02.g135700.t1.1,Cre02.g135700.t1.2 - - - - - - - - - Cre10.g430900 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 10 - - g10640.t1 PF04130 PTHR19302:SF14,PTHR19302 - - - GO:0005856,GO:0007020,GO:0000226,GO:0000922,GO:0005815 AT1G80260.1 emb1427 Spc97 / Spc98 family of spindle pole body (SBP) component Cre11.g480725 - 0 1 1.0 nan 0 1 1.0 nan C n - 13 - - g11933.t1,Cre11.g480700.t1.3 - - - - - - - - - Cre03.g198750 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 15 - - g4355.t1 PF00136 PTHR10322 - - - GO:0000166,GO:0003677,GO:0003887,GO:0006260 AT5G63960.1 EMB2780 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases Cre01.g020141 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g468.t1 - - - - - - - - - Cre12.g550400 GRX2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 5 Glutaredoxin, CPYC type Glutaredoxin 2, CPYC type glutaredoxin, probably cytosolic. PMID: 16328797 g13540.t1,Cre12.g550400.t1.1 PF00462 PTHR10168 KOG1752 - K03676 GO:0009055,GO:0015035,GO:0045454 AT1G77370.1 - Glutaredoxin family protein Cre02.g141846 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Rad51-like protein Rad51 homologue involved in meiotic recombination, homologous to eukaryotic DMC1. Previously annotated as DMC1 g2734.t1,Cre15.g646900.t1.1,Cre15.g646900.t1.2 PF08423 PTHR22942,PTHR22942:SF13 KOG1434 - K10872 - AT3G22880.1 ARLIM15,ATDMC1,DMC1 DNA repair (Rad51) family protein Cre10.g466800 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g11440.t1 - - - - - - - - - Cre17.g726900 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g17575.t1,Cre17.g726900.t1.1 - - - - - - - - - Cre10.g432500 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g10672.t1,Cre10.g432500.t1.1 - PTHR14222 KOG0414 - K06677 - AT3G57060.2 - binding Cre06.g259800 CWC22 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - Cwc22 pre-mRNA splicing factor High sequence similarity to putative cwc22 pre-mRNA splicing factor in Oryza sativa; shares MIF4G and MA3 domains in common with eIF4g. Contains alpha-helical MIF4G and MA3 domains, occurring in eIF4g, NM, D2p, CBP80; and MA3, DAP-5, respectively. g5840.t1,Cre06.g259800.t1.1,CWC22 PF02854,PF02847 PTHR18034,PTHR18034:SF3 KOG2140 - K13100 GO:0005515,GO:0016070 AT1G80930.1 - MIF4G domain-containing protein / MA3 domain-containing protein Cre16.g675861 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 Small ubiquitin-like modifier (SUMO) Small ubiquitin-like modifier in C. reinhardtii. Previously annotated as SUMO97, which is now split between SUM1 and SUM2. See Wang et al. 2008 [PMID: 18493050] g16734.t2,Cre01.g066500.t2.1, g16734.t1,Cre01.g066500.t1.1,Cre01.g066500.t1.2 PF11976 PTHR10562 KOG1769 - K12160 - AT5G55160.1 ATSUMO2,SUM2,SUMO 2,SUMO2 small ubiquitin-like modifier 2 Cre10.g445900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g10970.t1 PF00226,PF08190 - - - - GO:0031072 AT1G79030.1 - Chaperone DnaJ-domain superfamily protein Cre17.g716900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g17355.t1 PF00589 - - - - GO:0003677,GO:0006310,GO:0015074 - - - Cre03.g164000 TEF7 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 Predicted protein Protein withunknown function, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018] g3362.t1,Cre03.g164000.t1.1,TEF7 - - - - - - - - - Cre08.g376740 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g8874.t1, g8874.t2 PF01476 - - - - GO:0016998 - - - Cre12.g521900 - 0 6 1.0 1.0 0 6 1.0 1.0 C n upregulated 14 - - g12855.t1 - - - - - - - - - Cre12.g541150 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 2 - - g13753.t1 PF03942 - - - - - - - - Cre16.g681600 NUOS4B - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g16471.t1,Cre16.g681700.t2.1 - - - - - - - - - Cre09.g387350 CYG30 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n downregulated 15 Adenylate/guanylate cyclase Similar to guanylyl cyclase beta-3 [Apis mellifera] g9558.t1,Cre09.g387350.t1.1 PF00211 PTHR11920 - 4.6.1.2 K01769 GO:0009190,GO:0016849,GO:0035556 - - - Cre09.g387356 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 4 - - g9584.t1,Cre02.g121800.t1.1,Cre02.g121800.t1.2 - PTHR12270,PTHR12270:SF7 - - - - - - - Cre10.g458900 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 14 - - g11256.t1 - - - - - - - - - Cre14.g619200 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g14922.t1,Cre14.g619200.t1.1 - - - - - - AT4G13440.1 - Calcium-binding EF-hand family protein Cre08.g381516 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 5 - - g8978.t1 PF00106 PTHR24316:SF105,PTHR24316 KOG1208 - - GO:0008152,GO:0016491 AT4G09750.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre09.g403034 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g10034.t1,Cre02.g120550.t1.1,Cre02.g120550.t1.2 PF00857 PTHR14119 KOG4044 - - GO:0003824,GO:0008152 - - - Cre10.g439300 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g10818.t1,Cre10.g439300.t1.1 - - - - - - - - - Cre02.g075950 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g1361.t1 - - KOG4462 - - - - - - Cre13.g588501 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g14437.t1,Cre13.g588500.t1.2 - - - - - - - - - Cre03.g168800 KIN4-1 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 11 - - g3475.t1,KIN4-1 PF00225 PTHR24115:SF279,PTHR24115 KOG0963 - K10395 GO:0003777,GO:0005524,GO:0007018 AT5G47820.1 FRA1 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre09.g396028 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 7 - - g9825.t1,Cre02.g132600.t1.1,Cre02.g132600.t1.2 - - - - - - - - - Cre02.g073500 FAP241 - 0 4 1.0 1.0 0 4 1.0 1.0 C n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g1301.t1 - - - - - - - - - Cre06.g269950 EZY21,CDC48,NSG14 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 8 Protein involved in ubiquitin-dependent degradation of ER-bound substrates Flagellar Associated Protein with conserved AAA domain ; higher plant homologue is involved in formation of ER in the cell division plane during cytokinesis (PMID: 12427991); CDC48 (p97) functions as an hexameric complex presenting ER-bound substrates eit g6057.t1,Cre06.g269950.t1.1,CDC48,EZY21,NSG14 PF02359,PF02933,PF00004 PTHR23077,PTHR23077:SF18 KOG0730 - K13525 GO:0005524 AT3G53230.1 - ATPase, AAA-type, CDC48 protein Cre10.g440850 GPX4 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 Glutathione peroxidase Homologous to glutathione peroxidase from other organisms. Possibly chloroplastic (prediction programs). g10849.t1, g10849.t2 PF00255 PTHR11592 KOG1651 - - GO:0004602,GO:0006979,GO:0055114 AT2G25080.1 ATGPX1,GPX1 glutathione peroxidase 1 Cre03.g196750 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g4075.t1 PF01679 - KOG1773 - - GO:0016021 - - - Cre09.g402849 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g10029.t1,Cre02.g140800.t1.1,Cre02.g140800.t1.2 - - - - - - - - - Cre02.g115226 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g2381.t1 - - - - - - - - - Cre01.g026800 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 10 - - g614.t1 - - - - - - - - - Cre07.g317050 UBQ6 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 14 Ubiquitin Contains an N-terminal RING-like Zn-finger domain, an ubiquitin domain, among other regions with no database similarity g7329.t1,Cre07.g317050.t1.1,UBQ6 PF00240 PTHR10666 KOG0005 - - GO:0005515 AT1G65350.1 UBQ13 ubiquitin 13 Cre10.g455500 GTF4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11178.t1,Cre10.g455500.t1.1,GTF4 PF00439 PTHR22880:SF31,PTHR22880 - - - GO:0005515 AT1G73150.1 GTE3 global transcription factor group E3 Cre10.g464400 SSA20 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - Predicted protein Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA) g11380.t1,SSA20 PF00089 PTHR24258 KOG3627 - - GO:0004252,GO:0006508 - - - Cre16.g669550 METC - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 Cystathionine beta-lyase Possibly localized to chloroplast; (CBL), Beta-cystathionase, Cysteine lyase. Previously annotated as METC. Catalyzes the third step of methionine synthesis from homoserine g16239.t1,Cre16.g669550.t1.1,METC PF01053,PF02615 PTHR11808,PTHR11808:SF18 KOG0053 4.4.1.8 K01760 GO:0006520,GO:0030170,GO:0008152,GO:0016491,GO:0055114 AT3G57050.1 CBL cystathionine beta-lyase Cre35.g759247 SRR5 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 16 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) and C-type lectin domain g18357.t1,Cre66.g793450.t1.1,Cre66.g793450.t1.2,SRR5 - - - - - - - - - Cre07.g337150 RFC2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 DNA replication factor C complex subunit 2 Homologous to eukaryotic RFC2 (DNA replication factor C complex subunit 2); accessory protein of DNA polymerase. g7845.t1,Cre07.g337150.t1.1,RFC2 PF08542,PF00004 PTHR11669 KOG0991 - K10755 GO:0003689,GO:0005524,GO:0005663,GO:0006260 AT1G63160.1 RFC2 replication factor C 2 Cre01.g053288 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 2 - - g1177.t1,Cre01.g053288.t1.1, g1177.t2 PF05189,PF01137 PTHR11096 KOG3980 6.5.1.4 K01974 GO:0006396 AT5G22100.1 - RNA cyclase family protein Cre16.g696050 - 0 9 1.0 1.0 0 9 1.0 1.0 O n downregulated 14 - - g15547.t1 - PTHR11584:SF273,PTHR11584 - - - - - - - Cre12.g538100 GST9 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g13231.t1,Cre12.g538100.t1.1,GST9 PF00043 PTHR11260,PTHR11260:SF67 KOG2903 - K07393 - AT4G19880.1 - Glutathione S-transferase family protein Cre13.g590950 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g14492.t1,Cre13.g590950.t1.1 - - KOG4057 - - - - - - Cre12.g530350 IRT2,ZIP10 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 13 Iron-nutrition responsive ZIP family transporter Related to bacterial zupT homologs; physically linked to IRT1; (CrZIP10); PMID: 15710683; PMID: 16766055 g13055.t1,IRT2,ZIP10 PF02535 PTHR11065:SF5,PTHR11065 - - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 AT3G20870.1 ZTP29 ZIP metal ion transporter family Cre03.g151100 SSA15 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 Predicted protein Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA) g3075.t1,SSA15 PF00023,PF01753 PTHR22904,PTHR22904:SF65 KOG4214 - - GO:0005515,GO:0008270 AT1G12270.1 - stress-inducible protein, putative Cre17.g727750 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g17593.t1 - - - - - - AT3G56100.1 IMK3,MRLK meristematic receptor-like kinase Cre01.g002861 SRR24 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 10 - - g68.t1 - PTHR11177:SF44,PTHR11177 - - - - - - - Cre13.g574300 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 18 - - g14117.t1 PF00069,PF03924 PTHR23257:SF343,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre17.g713850 SAT2 - 0 1 1.0 nan 0 1 1.0 nan C n - - Serine O-acetyl transferase Serine O-acetyl transferase (EC 2.3.1.30); plastid targeting weakly predicted by Target-P; involved in cysteine and methionine biosynthesis g17286.t1,SAT2 PF06426 PTHR23416:SF9,PTHR23416 KOG4750 2.3.1.30 K00640 GO:0005737,GO:0006535,GO:0009001 AT2G17640.1 ATSERAT3;1,SAT-106 Trimeric LpxA-like enzymes superfamily protein Cre09.g409200 SRS6 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10141.t1,Cre09.g409200.t1.1,SRS6 - - - - K13172 - AT3G49601.1 - - Cre01.g010832 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 14 - - g270.t1 PF00112,PF08246 PTHR12411:SF160,PTHR12411 KOG1543 - - GO:0006508,GO:0008234 AT3G45310.1 - Cysteine proteinases superfamily protein Cre12.g507100 - 0 1 1.0 nan 0 1 1.0 nan - n - 12 - - g12421.t1 - - - - - - - - - Cre12.g532850 PHR3 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g13109.t1,PHR3 PF00060,PF00497 PTHR18966:SF42,PTHR18966 - - - GO:0004970,GO:0005234,GO:0016020,GO:0005215,GO:0006810,GO:0030288 - - - Cre06.g292050 MMP21 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 17 - - g6766.t1,Cre06.g292050.t1.1,MMP21 PF05548 - - - - - - - - Cre16.g681014 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g16782.t1,Cre01.g068500.t1.1 - - - - - - - - - Cre02.g113100 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g2329.t1,Cre02.g113100.t1.1 PF03650 PTHR14154:SF3,PTHR14154 KOG1590 - - - AT5G20090.1 - Uncharacterised protein family (UPF0041) Cre09.g402071 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g10008.t1 - - - - - - - - - Cre03.g144544 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 13 - - g2891.t1 - - - - - - - - - Cre09.g394288 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 17 - - g9778.t1,Cre02.g130450.t1.1,Cre02.g130450.t1.2 - - - - - - - - - Cre17.g738500 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g17862.t1 - - - - - - AT5G40740.1 - - Cre05.g246900 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g5194.t1,Cre05.g246900.t1.1 PF06525 - - - - - - - - Cre13.g562501 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 7 - - g13844.t1 PF02769,PF00586 PTHR10256 KOG3939 2.7.9.3 K01008 GO:0003824 - - - Cre03.g180350 CKS1,NSG16 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Cyclin dependent kinase regulatory subunit Cyclin dependent kinase regulatory subunit. Identified by Abe et al. 2004 [PMID: 15459796] as NSG16, a gene expressed during nitrogen-starved gametogenesis. g3738.t1,Cre03.g180350.t1.1,NSG16 PF01111 PTHR23415,PTHR23415:SF10 KOG3484 - K02219 GO:0007049,GO:0016538 AT2G27960.1 CKS1,CKS1AT cyclin-dependent kinase-subunit 1 Cre15.g641500 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g15466.t1,Cre15.g641500.t1.1 - - - - - - - - - Cre16.g648950 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g15704.t1 - - - - - - - - - Cre14.g624350 VTE6 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 4 - - g15042.t1,Cre14.g624350.t1.1,VTE6 PF08241 PTHR10108,PTHR10108:SF217 - - - GO:0008152,GO:0008168 AT1G64970.1 G-TMT,TMT1,VTE4 gamma-tocopherol methyltransferase Cre12.g520350 ALD1 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 Aldehyde dehydrogenase - g12822.t1,Cre12.g520350.t1.1,ALD1 PF00171 PTHR11699,PTHR11699:SF8 KOG2450 1.5.1.12 K00294 GO:0008152,GO:0016491,GO:0055114 AT5G62530.1 ALDH12A1,ATP5CDH,P5CDH aldehyde dehydrogenase 12A1 Cre03.g205473 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g4415.t1,Cre19.g754150.t1.1,Cre19.g754150.t1.2 - - - - - - - - - Cre12.g512100 PIF1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - PIF1-related DNA helicase PIF1-related DNA helicase; probably inhibits telomerase activity and is cell cycle regulated g12305.t1,PIF1 PF05970 PTHR10492 KOG0987 - - - - - - Cre08.g375500 ATF1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 Glucosamine-fructose-6-phosphate aminotransferase Glucosamine--fructose-6-phosphate aminotransferase (glucosamine-6-phosphate synthase) (hexosephosphate aminotransferase) [EC:2.6.1.16]; contains amidotransferase and phosphosugar isomerase domains; pathway: glutamate metabolism - aminosugars metabolism g8846.t1,Cre08.g375500.t1.1,ATF1 PF01380,PF00310 PTHR10937 KOG1268 2.6.1.16 K00820 GO:0005529,GO:0005975,GO:0008152 AT3G24090.1 - glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases Cre17.g736474 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g17814.t1 - - KOG0702 - - - - - - Cre17.g726150 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 5 - - g17559.t1 PF00004 PTHR23073:SF18,PTHR23073 - - - GO:0005524 AT4G04180.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre12.g537226 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n upregulated 2 - - g13210.t1 - - - - - - - - - Cre06.g301600 - 0 12 1.0 1.0 0 12 1.0 1.0 SP n - - - - g6978.t1 PF01532,PF02225 PTHR11742,PTHR11742:SF11 KOG2429 - K10085,K10086 GO:0004571,GO:0005509,GO:0016020 AT5G43710.1 - Glycosyl hydrolase family 47 protein Cre16.g675650 ALD8 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g16604.t1,Cre16.g675650.t1.1,ALD8 PF00171 PTHR11699:SF27,PTHR11699 KOG2450 1.2.1.27 K00140 GO:0008152,GO:0016491,GO:0055114,GO:0004491 AT2G14170.1 ALDH6B2 aldehyde dehydrogenase 6B2 Cre03.g163600 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 17 - - g3354.t1,Cre03.g163600.t1.1 - - - - - - - - - Cre12.g521750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g12852.t1,Cre12.g521750.t1.1 - - - - - - - - - Cre03.g146147 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - - - g2972.t1,Cre01.g060850.t1.1,Cre01.g060850.t1.2 PF00504 - - - - - AT1G44575.1 NPQ4,PSBS Chlorophyll A-B binding family protein Cre07.g318651 AOF4 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - - - g7366.t1,AOF4 PF04433,PF01593 PTHR10742:SF30,PTHR10742 KOG0029 1.-.-.- K11450 GO:0005515 AT3G13682.1 LDL2 LSD1-like2 Cre05.g236216 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 13 - - g5431.t1 PF00400,PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT5G03730.1 AtCTR1,CTR1,SIS1 Protein kinase superfamily protein Cre07.g350300 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g8149.t1,Cre07.g350300.t1.1 - - - - - - - - - Cre13.g583500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g14326.t1 - PTHR15137 KOG4462 - K03128 - AT1G73960.2 TAF2 TBP-associated factor 2 Cre10.g429702 - 0 3 1.0 1.0 0 3 1.0 1.0 - n - - - - g10614.t1 - - - - - - - - - Cre10.g424750 PPD1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Pyruvate phosphate dikinase Pyruvate phosphate dikinase (PPDK) (EC 2.7.9.1); Pyruvate orthophosphate dikinase (PODK); Target-P predicts no organelle targeting sequence; similar to PPDK from Phytophthora (GenBank AAK74150) g10500.t1,Cre10.g424750.t1.1,PPD1 PF02896,PF01326,PF00391 PTHR22931,PTHR22931:SF9 - - - GO:0016310,GO:0016772,GO:0005524,GO:0016301 AT4G15530.5 PPDK pyruvate orthophosphate dikinase Cre05.g246200 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5211.t1 PF00069 PTHR24361 - - - GO:0004672,GO:0005524,GO:0006468 AT5G58140.1 NPL1,PHOT2 phototropin 2 Cre12.g543650 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g13696.t1 - - - - - - - - - Cre02.g078777 PHC16 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g1430.t1,Cre02.g078800.t1.2,PHC16 PF12499 - - - - - - - - Cre02.g143300 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g2619.t1,Cre02.g143300.t1.1 - - - - - - - - - Cre07.g342800 CGL16 - 0 6 1.0 1.0 0 6 1.0 1.0 C Y - 18 Predicted protein Conserved protein g7929.t1 - - - - - - AT1G07040.1 - - Cre03.g155900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g3180.t1 - - - - - - - - - Cre02.g100050 PHX6 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 - - g2037.t1,Cre02.g100050.t1.1,PHX6 - PTHR10869 - - - - AT3G28490.1 - Oxoglutarate/iron-dependent oxygenase Cre16.g656950 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g15877.t1, g15877.t2 - - KOG4674 - - - - - - Cre11.g478450 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g11878.t1 - - - - - - - - - Cre08.g383950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g9037.t1 - - - - - - - - - Cre08.g376350 ASF1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 Anti-silencing factor Anti-silencing factor, Silencing Group A, ChromDB SGA3401; homologous to yeast ASF1 g8865.t1,Cre08.g376350.t1.1,ASF1, g8865.t2,ASF1 PF04729 PTHR12040 KOG3265 - K10753 GO:0005634,GO:0006333 AT1G66740.1 ASF1A,AtSP7,SGA2,SP7 ASF1 like histone chaperone Cre12.g535350 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 9 - - g13168.t1,Cre12.g535350.t1.1 - - - - - - AT5G24710.1 - Transducin/WD40 repeat-like superfamily protein Cre05.g239950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g5533.t1 - - - - - - - - - Cre01.g043300 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 9 - - g968.t1,Cre01.g043300.t1.1 - - - - - - - - - Cre14.g611200 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g14733.t1,Cre14.g611200.t1.1 PF02536 PTHR13068 - - - - AT4G14605.1 - Mitochondrial transcription termination factor family protein Cre12.g487601 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - - - g12237.t1 - - - - - - - - - Cre16.g677650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g16563.t1 - - - - - - - - - Cre08.g360850 - 0 7 1.0 1.0 0 7 1.0 1.0 M n upregulated 3 - - g8450.t1,Cre08.g360850.t1.1 PF03969 PTHR12169 - - - GO:0005524 AT2G25530.1 - AFG1-like ATPase family protein Cre13.g582671 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g14303.t1 - - - - - - - - - Cre06.g305600 ADH9 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g7074.t1,Cre06.g305600.t1.1,ADH9 PF08240 PTHR11695,PTHR11695:SF46 KOG0024 - - GO:0008270,GO:0016491,GO:0055114 AT5G63620.2 - GroES-like zinc-binding alcohol dehydrogenase family protein Cre17.g718550 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 16 - - g17390.t1 - PTHR11795:SF296,PTHR11795 - - - - - - - Cre03.g166950 PGM5 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Phosphoglycerate mutase Phosphoglycerate/bisphosphoglycerate mutase family protein (PGAM) [EC 5.4.2.1]l g3426.t1,Cre03.g166950.t1.1,PGM5 PF00300 PTHR11931 KOG0235 - - GO:0006096,GO:0016868 AT1G22170.1 - Phosphoglycerate mutase family protein Cre17.g705550 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g17100.t1,Cre17.g705550.t1.1 PF09766 PTHR13375 KOG2216 - K13174 - AT5G42920.2 AtTHO5,THO5 THO complex, subunit 5 Cre16.g682450 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 10 - - g16453.t1, g16453.t2 PF00023 - - - - GO:0005515 AT4G27780.1 ACBP2 acyl-CoA binding protein 2 Cre12.g492503 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g12101.t1 - - - - - - - - - Cre03.g167600 FAP61 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation g3440.t1,Cre03.g167600.t1.1 PF07992 PTHR21178,PTHR21178:SF8 - - - - - - - Cre06.g283634 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g6595.t1, g6595.t2 - PTHR14304:SF2,PTHR14304 KOG0106 - - - AT2G03150.1 emb1579 ATP/GTP-binding protein family Cre02.g114900 ANK23 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g2374.t1,ANK23 PF00023 PTHR24128 KOG4214 - - GO:0005515 AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre02.g078507 - 0 5 1.0 1.0 0 5 1.0 1.0 C n upregulated 6 - - g1424.t1,Cre02.g078507.t1.1 - - - - - - - - - Cre02.g078500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g1423.t1,Cre02.g078500.t1.1 - - - - - - - - - Cre12.g490150 HEL48 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 10 - - g12182.t1,HEL48, g12182.t2,HEL48 PF00570,PF00271,PF09382,PF00270 PTHR13710 KOG0351 3.6.4.12 K10900 GO:0003676,GO:0005622,GO:0004386,GO:0005524,GO:0006310,GO:0008026,GO:0006260,GO:0006281,GO:0043140 AT5G27680.1 RECQSIM RECQ helicase SIM Cre16.g657600 - 0 17 1.0 1.0 0 17 1.0 1.0 M n - 2 - - g15890.t2, g15890.t1 - - - - - - - - - Cre07.g352213 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8191.t1,Cre07.g352213.t1.1 - - - - - - - - - Cre08.g382605 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g9006.t1 - - - - - - - - - Cre04.g218150 PPP18 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g4755.t1,Cre04.g218150.t1.1,PPP18 PF00481 PTHR13832,PTHR13832:SF139 KOG0698 - - GO:0003824 AT4G27800.1 PPH1,TAP38 thylakoid-associated phosphatase 38 Cre07.g341750 - 0 12 1.0 1.0 0 12 1.0 1.0 C n - - - - g7953.t1,Cre07.g341750.t1.1 - - - - - - - - - Cre08.g381550 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g8979.t1,Cre08.g381550.t1.1 PF03330 - - - - - AT5G39310.1 ATEXP24,ATEXPA24,ATHEXP ALPHA 1.19,EXP24,EXPA24 expansin A24 Cre10.g421950 TEF26 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 15 Predicted protein Protein with unknown function, mitochondrial localization assumed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018] g10440.t1,Cre10.g421950.t1.1,TEF26, g10440.t2,TEF26 PF12576 - - - - - AT5G13940.1 - aminopeptidases Cre08.g368226 - 0 1 1.0 nan 0 1 1.0 nan - n - 12 - - g8629.t1 - - - - - - - - - Cre16.g648250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g15689.t1 - - - - - - - - - Cre14.g610647 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated 13 - - g14721.t1,Cre42.g787350.t1.1 PF02209 - - - - GO:0003779,GO:0007010 - - - Cre02.g143447 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g2832.t1,Cre38.g785350.t1.1 PF00789 PTHR23153,PTHR23153:SF14 - - - GO:0005515 AT2G01650.1 PUX2 plant UBX domain-containing protein 2 Cre17.g715100 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g17311.t1,Cre17.g715100.t1.1 - - - - - - AT5G17510.1 - - Cre12.g519900 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 1 - - g12811.t1,Cre12.g519900.t1.1 PF02875,PF08245 PTHR23135,PTHR23135:SF4 - - - GO:0005524,GO:0009058,GO:0016874 AT1G63680.1 ATMURE,MURE,PDE316 acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases Cre08.g372500 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - - - g8724.t1,Cre08.g372500.t1.1 PF04762 PTHR12747 KOG1920 - K11373 - AT5G13680.1 ABO1,ELO2 IKI3 family protein Cre08.g377750 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g8894.t2, g8894.t1 - - - - - - - - - Cre03.g212081 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 18 - - g4477.t1,Cre19.g756800.t1.1 - - - - - - - - - Cre08.g361063 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g8455.t1,Cre08.g361063.t1.1 - - - - - - - - - Cre12.g490891 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g12167.t1,Cre12.g490891.t1.1 - - - - - - - - - Cre09.g402441 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g10018.t1,Cre02.g140200.t1.1 - - - - - - - - - Cre11.g479550 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 16 - - g11905.t2, g11905.t1 - - - - - - - - - Cre01.g036650 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 - - g823.t1 PF00069 PTHR24351,PTHR24351:SF123 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT3G53930.2 - Protein kinase superfamily protein Cre16.g684050 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 9 - - g16418.t1 - - - - - - - - - Cre03.g200700 FAP166 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g4312.t1,Cre03.g200700.t1.1 - - - - - - - - - Cre01.g001650 - 0 1 1.0 nan 0 1 1.0 nan SP n - 1 - - g36.t1,Cre01.g001650.t1.1 PF00023 PTHR24198:SF302,PTHR24198 KOG4214 - - GO:0005515 AT4G19150.1 - Ankyrin repeat family protein Cre10.g467200 ATR1 - 0 10 1.0 1.0 0 10 1.0 1.0 M n - 10 ATM/ATR-related phosphatidylinositol 3-kinase ATM/ATR-related hosphatidylinositol 3-kinase. Homologous to eukaryotic Ataxia telangiectasia-related (ATR), Rad3; DNA damage sensing protein kinase homolog. Previously annotated as ATR1 g11448.t1,ATR1 PF02260,PF02259,PF00454 PTHR11139,PTHR11139:SF7 - 2.7.11.1 K06640 GO:0005515,GO:0016773 AT5G40820.1 ATATR,ATR,ATRAD3 Ataxia telangiectasia-mutated and RAD3-related Cre08.g380600 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 15 - - g8957.t1 PF00069 PTHR24058:SF30,PTHR24058 KOG0671 2.7.12.1 K08287 GO:0004672,GO:0005524,GO:0006468 AT4G24740.1 AFC2,AME1,FC2 FUS3-complementing gene 2 Cre16.g684750 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 17 - - g16403.t1,Cre16.g684750.t1.1 PF00248 PTHR11732:SF7,PTHR11732 KOG1575 - - GO:0016491,GO:0055114 AT2G27680.1 - NAD(P)-linked oxidoreductase superfamily protein Cre06.g285700 - 0 12 1.0 1.0 0 12 1.0 1.0 SP n - 16 - - g6640.t1,Cre06.g285700.t1.1 PF10296 - - - - - AT1G73200.1 - Putative integral membrane protein conserved region (DUF2404) Cre01.g030550 UBX1 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 8 - - g692.t1,Cre01.g030550.t1.1,UBX1 PF09409 PTHR13020,PTHR13020:SF20 KOG2699 - - - AT1G04850.1 - ubiquitin-associated (UBA)/TS-N domain-containing protein Cre09.g391134 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g9687.t1,Cre02.g126500.t1.1,Cre02.g126500.t1.2 - - - - - - - - - Cre12.g499150 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g12601.t1, g12601.t2 - - - - - - - - - Cre03.g159350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g3263.t1 PF00400 PTHR22847:SF228,PTHR22847 KOG0286 - - - AT3G49660.1 - Transducin/WD40 repeat-like superfamily protein Cre12.g499152 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12602.t1 - - - - - - - - - Cre12.g503150 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g12507.t1 - - - - - - AT1G30680.1 - toprim domain-containing protein Cre06.g304150 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g7042.t1 PF00023,PF06985 PTHR24198:SF302,PTHR24198 KOG4412 - - GO:0005515 AT5G13530.2 KEG protein kinases;ubiquitin-protein ligases Cre06.g270100 SBE2 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - - Starch Branching Enzyme Starch branching enzyme (SBE); SBE catalyses the formation of alpha-1,6 linkages within the polymer by cleaving a preexisting linear chain and transferring the fragment at the non reducing end of the cleaved glucan to an alpha-1,6 position g6060.t1 PF00128,PF02806,PF02922 PTHR10357:SF27,PTHR10357 KOG0470 2.4.1.18 K00700 GO:0003824,GO:0005975,GO:0043169,GO:0004553 AT5G03650.1 SBE2.2 starch branching enzyme 2.2 Cre01.g026250 AGA1 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 Alpha-galactosidase Alpha-galactosidase (melibiase); belongs to the family 27 of O-glycosyl hydrolases of clan GH-D g603.t1,Cre01.g026250.t1.1,AGA1 PF01549,PF02065 PTHR11452 KOG2366 3.2.1.22 K07407 GO:0004553,GO:0005975 AT5G08370.1 AGAL2,AtAGAL2 alpha-galactosidase 2 Cre12.g542100 - 0 5 1.0 1.0 0 5 1.0 1.0 C n upregulated 4 - - g13730.t1,Cre12.g542100.t1.1 PF02897,PF00326 PTHR11757,PTHR11757:SF2 KOG2237 3.4.21.26 K01322 GO:0004252,GO:0006508,GO:0008236 AT1G76140.1 - Prolyl oligopeptidase family protein Cre03.g195050 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g4039.t1,Cre03.g195050.t1.1 PF00248 PTHR11732:SF115,PTHR11732 KOG1575 - - GO:0016491,GO:0055114 AT1G04420.1 - NAD(P)-linked oxidoreductase superfamily protein Cre07.g328226 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - - - - g7635.t1 - - - - - - - - - Cre17.g728300 FAP226,CAL6 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 12 Calpain cysteine protease and Flagellar Associated Protein Calpain cysteine protease. Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. Previously annotated as FAP226 g17604.t1,CAL6 PF00648 PTHR10183:SF154,PTHR10183 - - - GO:0004198,GO:0005622,GO:0006508 AT1G55350.5 ATDEK1,DEK1,EMB1275,EMB80 calpain-type cysteine protease family Cre04.g225000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g4917.t1, g4917.t2, g4917.t3 - - - - - - - - - Cre16.g675413 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g16730.t1,Cre01.g066350.t1.1 - - - - - - - - - Cre10.g463450 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g11358.t1 - - - - - - - - - Cre09.g415450 KIN17-1 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 9 - - g10286.t1,Cre09.g415450.t1.1,KIN17-1 PF00225 PTHR24115,PTHR24115:SF364 KOG0242 - - GO:0003777,GO:0005524,GO:0007018 AT3G45850.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre01.g017350 RMT3 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g411.t1 - PTHR13271,PTHR13271:SF7 - - - - AT1G24610.1 - Rubisco methyltransferase family protein Cre11.g478600 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 11 - - g11881.t1,Cre11.g478600.t1.1 - - - - - - - - - Cre07.g347800 SMM29 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g8093.t1,Cre07.g347800.t1.1,SMM29 PF10294 PTHR14614 KOG2793 - - - AT1G08125.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre09.g416900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g10317.t1 - - - - - - - - - Cre14.g614000 CGL17 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 10 Predicted protein Conserved expressed protein g14794.t1 - - - - - - AT1G50020.1 - - Cre05.g248650 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g5159.t1 - PTHR13825,PTHR13825:SF3 KOG0956 - - - - - - Cre06.g281286 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 2 - - g6542.t1,Cre06.g281286.t1.1 - - - - - - - - - Cre09.g388600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g9528.t1 - - - - - - - - - Cre12.g483800 CPY - 0 11 1.0 1.0 0 11 1.0 1.0 M n - 16 - - g12009.t1,CPY - - KOG2652 - - - - - - Cre01.g015850 FAP68 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG17 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400] g379.t1 - - - - - - - - - Cre13.g585100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 7 - - g14362.t1,Cre13.g585100.t1.1 PF00790 - KOG1087 - - GO:0006886 AT4G32760.2 - ENTH/VHS/GAT family protein Cre03.g153050 RWP1 - 0 1 1.0 nan 0 1 1.0 nan O n - - RWP-RK transcription factor Putative RWP-RK domain transcription factor [PMID: 15785851]; model is very tentative g3116.t1,RWP1 PF02042 - - - - - AT1G18790.1 - RWP-RK domain-containing protein Cre03.g201150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g4302.t1 - - - - - - AT3G11950.1 - TRAF-like superfamily protein Cre02.g106900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g2191.t1,Cre02.g106900.t1.1 - - - - - - - - - Cre03.g146807 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g3005.t1,Cre01.g062450.t1.1,Cre01.g062450.t1.2 - - - - - - - - - Cre06.g287700 STK18,STPK18 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated - Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK18 g6682.t1,STK18,STPK18 PF00069 PTHR23257,PTHR23257:SF99 KOG0581 - - GO:0004672,GO:0005524,GO:0006468 AT4G35780.1 - ACT-like protein tyrosine kinase family protein Cre11.g468050 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 2 - - g11741.t1,Cre11.g468050.t1.1 PF04012 - - - - - AT1G65260.1 PTAC4,VIPP1 plastid transcriptionally active 4 Cre02.g095078 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g1852.t1,Cre11.g471600.t1.1,Cre11.g471600.t1.2 PF07707 - - - - - - - - Cre01.g021700 CYG36 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 15 Adenylate/guanylate cyclase Large protein with C-terminal domain similar to guanylate cyclase [Aedes aegypti] g502.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre06.g272500 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g6114.t1,Cre06.g272500.t1.1 - - - - - - - - - Cre02.g078750 PUS3 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 3 tRNA-pseudouridine synthase RNA pseudouridine synthase, mitochondrial precursor g1429.t1,PUS3 PF01479,PF00849 PTHR10436 - - - GO:0003723,GO:0001522,GO:0009451,GO:0009982 AT1G76050.2 - Pseudouridine synthase family protein Cre12.g518900 AKR9 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g12793.t1,Cre12.g518900.t1.1,AKR9 PF00248 PTHR11732:SF7,PTHR11732 KOG1575 - - GO:0016491,GO:0055114 AT2G27680.1 - NAD(P)-linked oxidoreductase superfamily protein Cre13.g604200 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 5 - - g14577.t1 - - - - - - - - - Cre17.g725550 GLD1 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 13 Glucose-6-phosphate-1-dehydrogenase Putative glucose-6-phosphate-1-dehydrogenase, cytosolic, based on similarity to Chlorella vulgaris cytosolic G6P DH (GI:21262179) g17547.t1,Cre17.g725550.t1.1 PF02781 PTHR23429 - - - GO:0004345,GO:0006006,GO:0055114,GO:0050661 AT3G27300.1 G6PD5 glucose-6-phosphate dehydrogenase 5 Cre07.g315500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 9 - - g7300.t1 - PTHR23125:SF100,PTHR23125 - - - - AT2G25490.1 EBF1,FBL6 EIN3-binding F box protein 1 Cre04.g219050 SRR10 - 0 21 1.0 1.0 0 21 1.0 1.0 SP n - 17 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g4774.t1,SRR10 PF01822,PF00530,PF12499 PTHR19331,PTHR19331:SF378 - - - GO:0005044,GO:0016020 - - - Cre03.g158550 SRH4 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 10 - - g3246.t1,Cre03.g158550.t1.1,SRH4 PF00176,PF00271,PF00385 PTHR10799:SF182,PTHR10799 KOG0384 3.6.4.12 K14437 GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT2G25170.1 CHD3,CHR6,GYM,PKL,SSL2 chromatin remodeling factor CHD3 (PICKLE) Cre07.g320900 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g7419.t1,Cre07.g320900.t1.1 PF05721 - - - - - - - - Cre16.g649750 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 4 - - g15721.t1 - - - - - - - - - Cre06.g303450 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g7026.t1 - - - - - - - - - Cre16.g671300 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g16293.t1,Cre16.g671300.t1.1 - - - - - - - - - Cre01.g050200 TNP8 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g1110.t1,Cre01.g050200.t1.1,TNP8 PF07282 PTHR23257,PTHR23257:SF99 - - - - - - - Cre01.g022050 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g509.t1,Cre01.g022050.t1.1 - - - - - - - - - Cre07.g341925 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g7949.t1,Cre07.g341925.t1.1 - - - - - - - - - Cre16.g689100 PUS6 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 15 tRNA-pseudouridine synthase RNA pseudouridine synthase g16177.t1,PUS6 PF00849 PTHR10436,PTHR10436:SF43 - - - GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT3G52260.2 - Pseudouridine synthase family protein Cre14.g624900 FAP171 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g15054.t1,Cre14.g624900.t1.1 - - - - - - - - - Cre17.g737800 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g17848.t1,Cre17.g737800.t1.1 - - - - - - - - - Cre14.g615750 CAM2 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - Calmodulin-like Contains three EF-hand, calcium binding motifs; most similar to calmodulin from protists; this is alternatively spliced. Possible regulator of calmodulin expression); if upstream AUG is used, generates a different protein in another reading frame, with n g14835.t1,CAM2 - - - - - - - - - Cre06.g305850 SMM20 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g7079.t1,SMM20 PF08241 PTHR12176 - - - GO:0008152,GO:0008168 AT3G60910.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre12.g497500 SNE7 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Cinnamoyl-CoA reductase/flavanone 4-reductase Cinnamoyl-CoA reductase/flavanone 4-reductase, an NAD dependent epimerase/dehydratase with flavanone 4-reductase activity g12635.t1,Cre12.g497500.t1.1,SNE7 PF01370 PTHR10366,PTHR10366:SF9 KOG1502 - - GO:0003824,GO:0044237,GO:0050662 AT1G09510.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre02.g089200 HLM4,SET3 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - Histone-lysine N-methyltransferase SET domain containing protein, histone methyltransferase; Protein contains a SET domain with similarity to Arabidopsis thaliana SUVH4/KYP/SET33 (At5g13960); published Chlamydomonas cDNA (AY702654); [PMID: 16100335]. Previously annotated as SET3. ChromoD g1663.t1,Cre02.g089200.t1.1,HLM4,SET3 PF00856,PF02182 PTHR22884,PTHR22884:SF114 KOG1082 - - GO:0005515,GO:0042393 AT2G22740.1 SDG23,SUVH6 SU(VAR)3-9 homolog 6 Cre17.g698700 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 9 - - g16947.t2, g16947.t1 PF03547 - KOG3262 - - GO:0016021,GO:0055085 - - - Cre16.g665950 MCM8 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 Minichromosome maintenance protein Homologous to MCM8 DNA replication protein g16072.t1,MCM8 PF00493 PTHR11630:SF47,PTHR11630 KOG0480 - K10737 GO:0003677,GO:0005524,GO:0006260 AT3G09660.1 MCM8 minichromosome maintenance 8 Cre13.g585050 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated 11 - - g14361.t2, g14361.t1,Cre13.g585050.t1.1 - - - - - - - - - Cre10.g452550 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 2 - - g11115.t1,Cre10.g452550.t1.1 PF02301 PTHR21518 - - - GO:0007067 AT1G67370.1 ASY1,ATASY1 DNA-binding HORMA family protein Cre02.g082200 HSK1 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 Homoserine kinase Putative homoserine kinase (EC:2.7.1.39), based on similarity to Arabidopsis homoserine kinase (GenBank AAD33097); Target-P predicts mitochondrial targeting sequence; predicted as plastidic based on homology g1506.t1,HSK1 PF08544,PF00288 PTHR20861:SF1,PTHR20861 - - - GO:0005524,GO:0016301,GO:0016310 AT2G17265.1 DMR1,HSK homoserine kinase Cre10.g419550 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g10385.t1,Cre10.g419550.t1.1, g10385.t2 PF07823 - - - - GO:0004112 AT4G18930.1 - RNA ligase/cyclic nucleotide phosphodiesterase family protein Cre06.g284550 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 3 - - g6616.t1,Cre06.g284550.t1.1 - - - - - - - - - Cre03.g207700 FPS1,PPS1,FPPS,FPPS1 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 Farnesyl pyrophosphate synthase Putative farnesyl pyrophosphate synthase (FPP synthetase) (FPS) (Farnesyl diphosphate synthetase). Previously annotated as FPPS or FPPS1 g4155.t1,FPPS,FPPS1,FPS1,PPS1 PF00348 PTHR11525 KOG0711 2.5.1.1,2.5.1.10 K00787 GO:0008299 AT4G17190.1 FPS2 farnesyl diphosphate synthase 2 Cre01.g033763 - 0 1 1.0 nan 0 1 1.0 nan C Y - 13 - - g763.t1,Cre01.g033763.t1.1 - - - - - - AT3G54970.1 - D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein Cre11.g476600 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g11838.t1,Cre11.g476600.t1.1 PF01565 PTHR11748:SF29,PTHR11748 - - - GO:0016491,GO:0050660 AT4G20860.1 - FAD-binding Berberine family protein Cre17.g731250 MRPS15 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 7 Mitochondrial ribosomal protein S15 Putative mitochondrial ribosomal protein S15, imported to mitochondria g17670.t1,Cre17.g731250.t1.1,MRPS15 PF00312 PTHR23321:SF15,PTHR23321 - - - GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT1G15810.1 - S15/NS1, RNA-binding protein Cre11.g467643 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g11574.t1,Cre18.g746500.t1.1,Cre18.g746500.t1.2 - - - - - - - - - Cre11.g467642 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g11573.t1,Cre18.g746550.t1.1,Cre18.g746550.t1.2 PF00560 PTHR24420 - - - GO:0005515 AT5G61240.1 - Leucine-rich repeat (LRR) family protein Cre11.g467641 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 10 - - g11572.t1,Cre18.g746600.t1.1 - - - - - - AT3G57440.1 - - Cre11.g467647 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11578.t1,Cre18.g746350.t1.1,Cre18.g746350.t1.2 PF01398 PTHR10540 KOG3050 - K12179 GO:0005515 AT4G26430.1 CSN6B COP9 signalosome subunit 6B Cre12.g546900 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 12 - - g13616.t1, g13616.t2 - PTHR23125 - - - - AT5G23340.1 - RNI-like superfamily protein Cre11.g467645 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g11576.t1,Cre18.g746414.t1.1,Cre18.g746414.t1.2 - PTHR10540 - - - - AT4G26430.1 CSN6B COP9 signalosome subunit 6B Cre03.g200950 FAP273 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g4306.t1,Cre03.g200950.t1.1 - - - - - - - - - Cre11.g467649 - 0 4 1.0 1.0 0 4 1.0 1.0 M n upregulated 17 RAP-domain containing protein with FAST leucine-rich domain RAP-domain containing protein. The RNA-binding RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Also contains a Fas-activated serine/threonine kinase le g11580.t1,Cre18.g746250.t1.1,Cre18.g746250.t1.2 PF06743,PF08373 PTHR21228,PTHR21228:SF19 - - - GO:0004672,GO:0005524,GO:0006915 AT2G31890.1 ATRAP,RAP RAP Cre11.g467648 RBL3 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 2 Rhomboid-like protein Similar to rhomboid intramembrane proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); possibly organelle-targeted; lacks the catalytic His, and hence probably inactive as a protease g11579.t1,Cre18.g746300.t1.1,Cre18.g746300.t1.2,RBL3 PF01694 - - - - GO:0004252,GO:0016021 AT5G25752.1 ATRBL11,RBL11 rhomboid-like protein 11 Cre03.g198950 CGL30 - 0 1 1.0 nan 0 1 1.0 nan C Y upregulated 5 Predicted protein Conserved expressed protein g4350.t1,Cre03.g198950.t1.1 PF01789 - - - - GO:0005509,GO:0009523,GO:0009654,GO:0015979,GO:0019898 AT1G77090.1 - Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein Cre03.g145787 HSP22C - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 1 Heat shock protein 22C Small heat shock protein containing an alpha-crystallin domain; N-terminus by TargetP weakly predicted to be chloroplast transit peptide; PMID: 16143837 g2954.t1,Cre01.g060000.t1.1,Cre01.g060000.t1.2,HSP22C PF00011 PTHR11527,PTHR11527:SF14 - - - - - - - Cre06.g294650 AGT1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 17 Alanine-glyoxylate transaminase Putative alanine-glyoxylate transaminase (EC 2.6.1.44); Present in thylakoid proteome based on mass spectrometric peptide identification; mitochondrial localization assumed [PMID: 17078018]; predicted by Target-P as mitochondrial; peroxisomal location sup g6820.t1,Cre06.g294650.t1.1,AGT1 PF00266 PTHR21152,PTHR21152:SF5 KOG2862 2.6.1.44,2.6.1.45,2.6.1.51 K00830 GO:0008152 AT2G13360.1 AGT,AGT1,SGAT alanine:glyoxylate aminotransferase Cre16.g648000 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g15684.t1,Cre16.g648000.t1.1 - - - - - - - - - Cre12.g554100 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 14 - - g13451.t1 - - - - - - - - - Cre10.g454250 FKB13,FKB16-9 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase); possibly targeted to thylakoid lumen (by homology to At5g45680 and presence of a RR motif); [PMID: 15701785] g11152.t1,Cre10.g454250.t1.1,FKB13 PF00254 PTHR10516 KOG0544 - - GO:0006457 AT1G73655.1 - FKBP-like peptidyl-prolyl cis-trans isomerase family protein Cre14.g620951 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 1 - - g14964.t1,Cre14.g620950.t1.2 PF04305 PTHR21496 - - - - AT1G06240.1 - Protein of unknown function DUF455 Cre17.g725950 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 7 - - g17555.t1, g17555.t2 PF00685 - - - - GO:0008146 - - - Cre02.g074511 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g1326.t1,Cre02.g074450.t1.3 PF00013 PTHR10288 - - - GO:0003723 AT2G25970.1 - KH domain-containing protein Cre16.g662250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g15992.t1 - PTHR12106,PTHR12106:SF14 KOG3511 - - - - - - Cre17.g729600 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 9 - - g17633.t1 PF00847 - - - - GO:0003700,GO:0006355 AT5G57390.1 AIL5,CHO1,EMK AINTEGUMENTA-like 5 Cre14.g611850 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g14746.t1,Cre14.g611850.t1.1 PF02990 PTHR10766,PTHR10766:SF7 KOG1277 - - GO:0016021 AT1G10950.1 AtTMN1,TMN1 transmembrane nine 1 Cre16.g664150 PDE18 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 15 3\',5\'-cyclic-nucleotide phosphodiesterase Homolog of calcium/calmodulin-dependent 3\',5\'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain. g16035.t1,PDE18 PF00233,PF03924 PTHR11347:SF75,PTHR11347 - 3.1.4.17 K01120 GO:0004114,GO:0007165 - - - Cre03.g166400 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g3415.t1,Cre03.g166400.t1.1 PF01663 - - - - GO:0003824 - - - Cre13.g582800 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g14309.t1,Cre13.g582800.t1.1 PF02655 - - - - GO:0005524,GO:0046872 - - - Cre09.g395200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g9387.t1 PF04087 PTHR20992,PTHR20992:SF9 - - - - - - - Cre07.g327150 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 8 - - g7608.t1 PF02373 PTHR12480:SF5,PTHR12480 KOG2130 - - - AT1G78280.1 - transferases, transferring glycosyl groups Cre02.g086456 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g1604.t3,Cre02.g086456.t1.1,Cre02.g086450.t2.1, g1604.t1,Cre02.g086450.t3.1, g1604.t2,Cre02.g086450.t1.3 - - - - - - - - - Cre01.g035350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g797.t1,Cre01.g035350.t1.1 PF00107,PF08240 PTHR11695,PTHR11695:SF15 KOG0025 1.3.1.38 K07512 GO:0008270,GO:0016491,GO:0055114 AT3G45770.1 - Polyketide synthase, enoylreductase family protein Cre06.g277450 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 5 - - g6218.t1,Cre06.g277450.t1.1 - - - - - - - - - Cre06.g280700 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g6529.t1,Cre06.g280700.t1.1 PF10197 PTHR24633:SF12,PTHR24633 KOG3794 - - - AT4G19190.1 - zinc knuckle (CCHC-type) family protein Cre16.g692000 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 9 - - g15638.t1 PF00328 - - - - GO:0003993 - - - Cre02.g143250 IDH2 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Isocitrate dehydrogenase, NAD-dependent Isocitrate dehydrogenase, NAD-dependent, possibly cytosolic isoform based on Target-P prediction g2620.t1,Cre02.g143250.t1.1 PF00180 PTHR11835,PTHR11835:SF5 KOG0785 1.1.1.41 K00030 GO:0000287,GO:0016616,GO:0051287,GO:0055114 AT3G09810.1 IDH-VI isocitrate dehydrogenase VI Cre13.g565000 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g13900.t1 - - - - - - - - - Cre16.g668552 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g16265.t1 - - - - - - - - - Cre06.g260850 NOP14 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 Nucleolar protein Nucleolar protein required for nuclear export of 40S ribosomal subunits; homologue of the yeast NOP14 protein g5862.t1,Cre06.g260850.t1.1,NOP14 PF04147 PTHR23183 - - - - AT1G69070.1 - - Cre03.g145167 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g2922.t1 - PTHR11439:SF123,PTHR11439 - - - - - - - Cre04.g229050 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g5014.t1 - PTHR14456,PTHR14456:SF2 - - - GO:0005524,GO:0035299 - - - Cre03.g173250 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 - - g3573.t1 - - - - - - - - - Cre03.g186950 PPP13 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g3873.t1,Cre03.g186950.t1.1,PPP13 PF00481 PTHR13832,PTHR13832:SF141 KOG0698 3.1.3.16 K01090 GO:0003824 AT4G31860.1 - Protein phosphatase 2C family protein Cre03.g201700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g4288.t1 - - - - - - AT1G48580.1 - - Cre13.g587350 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 11 - - g14409.t1, g14409.t2 - - - - - - - - - Cre12.g486800 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 11 - - g12255.t1,Cre12.g486800.t1.1 - - - - - - - - - Cre17.g724600 TIC55-2,PAO2 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 6 Pheophorbide a oxygenase, Rieske iron-sulfur cluster protein Pheophorbide a oxygenase, chloroplast precursor = LLS1 = ACD1; related to Rieske 2Fe2S containing ring-hydroxylating di-oxygenases; note proximity to PAO1; Rieske-type 2Fe-2S non-heme iron-binding protein with mononuclear-binding site and conserved CxxC d g17524.t2,TIC55-2, g17524.t1,Cre17.g724600.t1.1,TIC55-2 PF08417,PF00355 PTHR21266,PTHR21266:SF3 - 1.14.12.20 K13071 GO:0010277,GO:0055114,GO:0016491,GO:0051537 AT4G25650.2 ACD1-LIKE,PTC52,TIC55-IV ACD1-like Cre07.g332901 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 14 - - g7744.t1,Cre07.g332900.t1.3 - - KOG3544 - - - - - - Cre15.g640651 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g15390.t1 - - - - - - - - - Cre15.g640650 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g15389.t1 - - - - - - - - - Cre09.g403650 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 16 - - g9189.t1 PF00069 PTHR24349:SF127,PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre06.g261450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g5876.t1,Cre06.g261450.t1.1 PF00505 PTHR13711 KOG0381 - - GO:0003677 AT3G28730.1 ATHMG,HMG,NFD,SSRP1 high mobility group Cre02.g118400 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g2457.t1 PF07683,PF02492 PTHR13748,PTHR13748:SF4 - - - - AT1G80480.1 PTAC17 plastid transcriptionally active 17 Cre09.g400100 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 12 - - g9267.t1 PF01754,PF01428 PTHR10634 KOG3173 - - GO:0003677,GO:0008270 AT4G22820.1 - A20/AN1-like zinc finger family protein Cre17.g716200 SUM6,SUMO89B - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g17337.t1,Cre17.g716200.t1.1,SUM6,SUMO89B PF11976,PF03171 PTHR10562 KOG1769 - - GO:0016491 AT5G55160.2 ATSUMO2,SUM2,SUMO 2,SUMO2 small ubiquitin-like modifier 2 Cre01.g004700 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g114.t1,Cre01.g004700.t1.1 PF03188 - - - - GO:0016021 - - - Cre17.g719250 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g17406.t1 PF01595 PTHR12064 KOG2118 - - - AT4G33700.1 - CBS domain-containing protein with a domain of unknown function (DUF21) Cre13.g585150 EIF6A,EIF6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 2 Eukaryotic translation initiation factor 6 Eukaryotic translation initiation factor 6 (eIF-6). Found in the flagellar proteome [PMID: 15998802]. Previously annotated as EIF6A g14363.t1,Cre13.g585150.t1.1,EIF6,EIF6A PF01912 PTHR10784 KOG3185 - K03264 GO:0042256,GO:0043022 AT3G55620.1 emb1624 Translation initiation factor IF6 Cre06.g279050 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 7 - - g6488.t1,Cre06.g279050.t1.1 PF00069 PTHR24356,PTHR24356:SF41 - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre09.g389726 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 16 - - g9649.t1,Cre02.g124850.t1.1 - - - - - - - - - Cre04.g214801 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g4676.t3,Cre04.g214768.t1.2, g4676.t2,Cre04.g214768.t2.1, g4676.t1,Cre04.g214768.t3.1 - PTHR11713:SF9,PTHR11713 - - - - - - - Cre17.g697934 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g16926.t2, g16926.t1,Cre17.g697934.t1.1 PF09768 PTHR21711 KOG3314 - - GO:0004222 AT3G03420.1 - Ku70-binding family protein Cre03.g209393 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g4452.t1,Cre19.g755687.t1.1,Cre19.g755687.t1.2 PF00724 PTHR22893,PTHR22893:SF13 KOG0134 1.3.1.42 K05894 GO:0010181,GO:0016491 AT1G76690.1 ATOPR2,OPR2 12-oxophytodienoate reductase 2 Cre13.g563650 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g13869.t1 - - - - - - - - - Cre12.g556500 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g13402.t1,Cre12.g556500.t1.1 PF01847 PTHR15160 - - - GO:0005634,GO:0016567 - - - Cre13.g586000 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 - - g14381.t1,Cre13.g586000.t1.1 PF00501 PTHR25089:SF48,PTHR25089 - - - GO:0003824,GO:0008152 AT3G16170.1 - AMP-dependent synthetase and ligase family protein Cre04.g214700 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g4678.t1 - PTHR12406:SF23,PTHR12406 - - - - - - - Cre17.g733150 COP - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g17717.t1,COP, g17717.t2,COP PF00512,PF00072,PF01036,PF02518 PTHR24423 - - - GO:0000155,GO:0007165,GO:0016020,GO:0000156,GO:0000160,GO:0006355,GO:0005216,GO:0006811,GO:0005524 AT1G27320.1 AHK3,HK3 histidine kinase 3 Cre02.g110150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 16 - - g2260.t1,Cre02.g110150.t1.1 PF03110,PF07707,PF00651 PTHR24413 - - K10478 GO:0003677,GO:0005634,GO:0005515 AT1G20980.1 ATSPL14,FBR6,SPL14,SPL1R2 squamosa promoter binding protein-like 14 Cre17.g733400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 16 - - g17725.t1,Cre17.g733400.t1.1 - - - - - - - - - Cre10.g431150 ROC22,FAP256 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar Associated Protein, involved in circadian rhythms Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]. Matsuo et al.\'s (2008) roc22 (rhythm of chloroplast) circadian rhythm mutant locus maps here; this mutant leads to a low-amplitude rhythm phenotype g10646.t1,ROC22 PF00515 PTHR13371 KOG4825 - - GO:0005515 AT5G37590.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre11.g481375 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11953.t1 - - - - - - - - - Cre10.g466300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g11429.t1,Cre10.g466300.t1.1 - - - - - - AT3G56900.1 - Transducin/WD40 repeat-like superfamily protein Cre12.g513650 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g12680.t1,Cre12.g513650.t1.1 - - - - - - - - - Cre24.g755697 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 5 - - g18262.t1,Cre05.g231550.t2.1, g18262.t2,Cre05.g231550.t1.1,Cre05.g231550.t1.2 - - - - - - - - - Cre06.g258850 EZY7 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g5820.t1,Cre06.g258850.t1.1,EZY7 PF04232 - - - - - - - - Cre17.g717150 FAP263 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g17360.t1,Cre17.g717150.t1.1 - PTHR15654 - - - - - - - Cre10.g447600 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g11008.t1,Cre10.g447600.t1.1 - - - - - - - - - Cre09.g393062 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g9744.t1,Cre02.g128900.t1.1 PF07714 PTHR23257 - - - GO:0004672,GO:0006468 AT4G35780.1 - ACT-like protein tyrosine kinase family protein Cre06.g265602 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 16 - - g5964.t2, g5964.t1 - PTHR15921 KOG2071 - - - AT4G04885.1 PCFS4 PCF11P-similar protein 4 Cre13.g572401 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g14077.t1 - - - - - - - - - Cre15.g635998 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g15342.t1 - - - - - - - - - Cre07.g356550 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g8289.t2, g8289.t1 PF00211 PTHR24790,PTHR24790:SF7 KOG3671 - - GO:0009190,GO:0016849,GO:0035556 - - - Cre03.g179860 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g3724.t1 PF01189 PTHR22808,PTHR22808:SF1 KOG2198 - - - AT2G22400.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre06.g268925 - 0 1 1.0 nan 0 1 1.0 nan - n - 15 - - g6033.t1,Cre06.g268937.t1.2 - - - - - - - - - Cre02.g111400 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 - - g2291.t1,Cre02.g111400.t1.1 - - - - - - - - - Cre04.g216774 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 13 - - g4508.t1 - - - - - - - - - Cre10.g465650 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 13 - - g11410.t1,Cre10.g465650.t1.1 PF00400 PTHR22847:SF228,PTHR22847 KOG0319 - - - AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre07.g330500 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g7691.t1,Cre07.g330500.t1.1 PF04232 - - - - - - - - Cre01.g055000 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 18 - - g1213.t1 PF00293 - - - - GO:0016787 - - - Cre10.g461550 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g11315.t1,Cre10.g461550.t1.1 - - - - - - - - - Cre05.g234639 CCT4 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 T-complex protein 1, delta subunit T-complex protein 1, delta subunit (TCP-1-delta) (CCT-delta) (TCPD); subunit of cytosolic chaperonin complex g5358.t1,Cre24.g769900.t1.1,Cre24.g769900.t1.2,CCT4 PF00118 PTHR11353:SF26,PTHR11353 KOG0358 - - GO:0005524,GO:0006457,GO:0051082,GO:0044267 AT3G18190.1 - TCP-1/cpn60 chaperonin family protein Cre12.g518800 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n downregulated 15 - - g12791.t2, g12791.t1,Cre12.g518800.t1.1 PF00092 PTHR22992 - - - GO:0005515 AT5G57360.1 ADO1,FKL2,LKP1,ZTL Galactose oxidase/kelch repeat superfamily protein Cre07.g326750 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 3 - - g7599.t1 - - - - - - - - - Cre11.g476950 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g11845.t1 - - - - - - - - - Cre05.g242100 SUB8 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g5313.t1,SUB8 PF00082 PTHR10795,PTHR10795:SF112 - - - GO:0004252,GO:0006508 AT1G04110.1 SDD1 Subtilase family protein Cre07.g336900 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 9 - - g7839.t1 - - - - - - - - - Cre12.g538801 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g13247.t1 - - - - - - - - - Cre04.g232402 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n - 9 - - g5062.t1,Cre32.g781207.t1.1,Cre32.g781207.t1.2 - - - - - - - - - Cre07.g339100 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 16 - - g7887.t1 PF00069 PTHR24362 KOG0591 - - GO:0004672,GO:0005524,GO:0006468 AT1G54510.1 ATNEK1,NEK1 NIMA-related serine/threonine kinase 1 Cre10.g420512 - 0 1 1.0 nan 0 1 1.0 nan SP n - 18 - - g10405.t2,Cre10.g420521.t2.1, g10405.t1,Cre10.g420521.t1.2 PF03372 - - - - - AT3G58580.1 - DNAse I-like superfamily protein Cre01.g049400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 9 - - g1096.t1,Cre01.g049400.t1.1 PF04438 PTHR13483 - - - - AT1G04945.2 - HIT-type Zinc finger family protein Cre11.g482050 FAL13 - 0 4 1.0 1.0 0 4 1.0 1.0 O Y upregulated 16 Similar to Flagellar Associated Protein FAP208 Similar to Flagellar Associated Protein FAP208 that is found in the flagellar proteome [PMID: 15998802]. This overlaps with FAP208 gene model from v3 g11968.t1,Cre11.g482050.t1.1,FAL13 PF09751 PTHR12940 KOG2627 - K13118 - AT3G07790.1 - DGCR14-related Cre10.g440950 FAP192 - 0 9 1.0 1.0 0 9 1.0 1.0 O n downregulated 14 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g10851.t1,Cre10.g440950.t1.1,FAP192 PF00612 PTHR14465 - - - GO:0005515 - - - Cre03.g170500 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g3511.t1,Cre03.g170500.t1.1 - - - - - - AT5G64180.1 - - Cre09.g395050 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 11 - - g9390.t1 - - - - - - - - - Cre02.g095149 FAP143 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG9 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400] g1922.t1,Cre11.g474550.t1.1 - - - - - - - - - Cre02.g095148 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 7 - - g1921.t1,Cre11.g474500.t1.1,Cre11.g474500.t1.2 - - - - - - - - - Cre01.g003700 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 9 - - g93.t1,Cre01.g003700.t1.1 PF10263 PTHR23099 KOG3854 - - - - - - Cre02.g095141 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 7 - - g1914.t1,Cre11.g474150.t1.1 PF01494 PTHR13789 - - - GO:0004497,GO:0055114 - - - Cre02.g095140 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 12 - - g1913.t1,Cre11.g474100.t1.1 - - - - - - - - - Cre02.g095143 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g1916.t1,Cre11.g474250.t1.1 PF01753 PTHR13244 - - - GO:0008270 AT5G65450.1 UBP17 ubiquitin-specific protease 17 Cre02.g095142 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 7 - - g1915.t1,Cre11.g474200.t1.1 PF01753 PTHR13244 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre02.g095145 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g1918.t1,Cre11.g474350.t1.1,Cre11.g474350.t1.2 - - - - - - - - - Cre02.g095146 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g1919.t1,Cre11.g474400.t1.1,Cre11.g474400.t1.2 - - - - - - - - - Cre01.g030450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g690.t1 PF00443 PTHR24006,PTHR24006:SF196 KOG1864 3.1.2.15 K11858 GO:0004221,GO:0006511 AT3G49600.1 ATUBP26,SUP32,UBP26 ubiquitin-specific protease 26 Cre10.g463026 - 0 15 1.0 1.0 0 15 1.0 1.0 O n - 16 - - g11348.t1 PF00225 PTHR24115 - - - GO:0003777,GO:0005524,GO:0007018 AT2G21300.1 - ATP binding microtubule motor family protein Cre06.g298050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g6894.t1,Cre06.g298050.t1.1, g6894.t2 - - - - - - - - - Cre12.g495900 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g12139.t1 - - - - - - - - - Cre05.g241750 PDK3 - 0 1 1.0 nan 0 1 1.0 nan M n - - Mitochondrial pyruvate dehydrogenase kinase - g5320.t1,Cre05.g241750.t1.1 PF02518,PF10436 PTHR11947 KOG0787 - - GO:0005524 AT3G06483.1 ATPDHK,PDK pyruvate dehydrogenase kinase Cre05.g241751 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g5321.t1,Cre05.g241700.t1.3 - - - - - - - - - Cre12.g556750 SDR22,TIC32,TIC32-1 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 2 Short-chain dehydrogenase/reductase Short-chain dehydrogenase/reductase. Probably a protochlorophyllide reductase or retinol/estradiol 17beta dehydrogenase. 32 kDa translocon at the inner membrane of chloroplasts, similar to Tic32 from Pisum sativum (AAS38575) and Oryza sativa (ABA9179); g13397.t1,SDR22,TIC32,TIC32-1 PF00106 PTHR24320,PTHR24320:SF98 KOG1208 - - GO:0008152,GO:0016491 AT4G23420.3 - NAD(P)-binding Rossmann-fold superfamily protein Cre16.g653900 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 17 - - g15811.t1 - - - - - - - - - Cre08.g369950 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 17 - - g8669.t1 - - - - - - - - - Cre02.g088500 CPLD29 - 0 7 1.0 1.0 0 7 1.0 1.0 M Y upregulated 4 Conserved expressed protein - g1648.t1 PF07366 - - - - - AT1G71480.1 - Nuclear transport factor 2 (NTF2) family protein Cre15.g635200 BGY1 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 - - g15319.t1,Cre15.g635200.t1.1,BGY1 - PTHR13247 KOG3364 - - - AT3G57090.1 BIGYIN,FIS1A Tetratricopeptide repeat (TPR)-like superfamily protein Cre10.g443600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g10907.t1 - - - - - - - - - Cre16.g655250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g15839.t1,Cre16.g655250.t1.1 - - - - - - - - - Cre10.g444650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g10932.t1 - PTHR12618:SF11,PTHR12618 - - - - - - - Cre10.g430050 UBC20 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g10621.t1,Cre10.g430050.t1.1,UBC20 PF00179 PTHR24067,PTHR24067:SF24 KOG0423 6.3.2.19 K10583 GO:0016881 AT5G05080.1 ATUBC22,UBC22 ubiquitin-conjugating enzyme 22 Cre06.g250500 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g5610.t1,Cre06.g250500.t1.1 PF01256 PTHR12592 KOG3974 - - - AT5G19150.1 - pfkB-like carbohydrate kinase family protein Cre07.g345450 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g8038.t1, g8038.t2 - - - - - - - - - Cre12.g532950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g13112.t1,Cre12.g532950.t1.1 PF00060,PF00497 PTHR10211 - - - GO:0003904,GO:0006281,GO:0004970,GO:0005234,GO:0016020,GO:0005215,GO:0006810,GO:0030288 - - - Cre11.g475300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g11806.t1 - - - - - - - - - Cre07.g342100 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 15 Glutathione S-transferase - g7944.t1,Cre07.g342100.t1.1 PF00043 - - - - - - - - Cre16.g657150 NAT35 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 12 - - g15881.t1,NAT35 PF00583 PTHR23091:SF34,PTHR23091 - - - GO:0008080,GO:0008152 AT1G24040.1 - Acyl-CoA N-acyltransferases (NAT) superfamily protein Cre03.g162050 HDA4 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 9 - - g3321.t1,HDA4 PF00850 PTHR10625,PTHR10625:SF25 KOG1344 - - - AT3G18520.2 ATHDA15,HDA15 histone deacetylase 15 Cre16.g664450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g16041.t1 PF01417 PTHR12276,PTHR12276:SF43 KOG2057 - - - AT5G11710.1 - ENTH/VHS family protein Cre07.g343850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g8000.t1,Cre07.g343850.t1.1 - PTHR22895 KOG4199 - - - AT4G33945.1 - ARM repeat superfamily protein Cre07.g319800 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g7396.t1,Cre07.g319800.t1.1 - - - - - - - - - Cre17.g711250 MIP2 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - Major intrinsic protein superfamily, aquaporin-like Major intrinsic protein (MIP) superfamily, related to mammalian aquaporin 5 g17224.t1,Cre17.g711250.t1.1,MIP2 PF00230 PTHR19139,PTHR19139:SF48 KOG0223 - - GO:0005215,GO:0006810,GO:0016020 AT2G25810.1 TIP4;1 tonoplast intrinsic protein 4;1 Cre02.g104951 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 10 - - g2150.t1,Cre02.g104951.t1.1 - - - - - - - - - Cre02.g104950 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 10 - - g2149.t1 - - - - - - - - - Cre10.g444500 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g10929.t1,Cre10.g444500.t1.1 PF00581 PTHR13253 KOG1530 - - - AT5G66040.1 STR16 sulfurtransferase protein 16 Cre10.g449150 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g11044.t1 - - - - - - - - - Cre17.g719000 NSG12,UAP56 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Exon junction complex component, UAP56 DEAD/DEAH box helicase homolog Putative DEAD box protein UAP56, spliceosome-associated, part of EJC, involved in transport of mRNA out of nucleus. Identified by Abe et al. 2004 [PMID: 15459796] as NSG12, a gene expressed during nitrogen-starved gametogenesis. Previously annotated as U g17399.t1,Cre17.g719000.t1.1,NSG12,UAP56 PF00271,PF00270 PTHR24031:SF5,PTHR24031 KOG0329 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT5G11200.2 - DEAD/DEAH box RNA helicase family protein Cre02.g086150 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 17 - - g1596.t1,Cre02.g086150.t1.1 - - - - - - - - - Cre10.g429800 ABC1,COQ8 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 5 Ubiquinone biosynthesis protein 70 kDa protein similar to yeast COQ8 protein involved in ubiquinone-10 biosynthesis (PMID: 11279158). Previously called ABC1 (for Activity of bc1 complex) (PMID: 14695938); similar to At4g01660 gene product (PMID: 15710684) g10617.t1,Cre10.g429800.t1.1,ABC1,COQ8 PF03109 PTHR10566,PTHR10566:SF22 KOG1234 - K08869 - AT4G01660.1 ABC1,ATABC1,ATATH10 ABC transporter 1 Cre14.g608050 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n - 9 - - g14657.t1 PF10351 - - - - - AT5G49680.2 KIP Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain Cre02.g083500 FAO2 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 6 - - g1537.t1,Cre02.g083500.t1.1,FAO2 PF01494 PTHR13789,PTHR13789:SF71 - - - GO:0004497,GO:0055114 - - - Cre10.g448400 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g11025.t1 - - - - - - - - - Cre12.g541650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13741.t2,Cre12.g541650.t1.1, g13741.t1 - - - - - - - - - Cre02.g145231 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g2563.t1,Cre02.g145231.t1.1 PF04874 PTHR23405 KOG3064 - - - AT1G23280.1 - MAK16 protein-related Cre06.g278208 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g6350.t1,Cre13.g598650.t1.1,Cre13.g598650.t1.2 PF04845 PTHR12611 KOG3074 - - - AT2G32080.2 PUR ALPHA-1 purin-rich alpha 1 Cre02.g101200 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 5 - - g2065.t1,Cre02.g101200.t1.1 PF03765,PF00650 PTHR23324:SF4,PTHR23324 - - - - AT3G51670.1 - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Cre08.g368600 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g8638.t1 PF00069 PTHR26266:SF16,PTHR26266 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT4G13020.5 MHK Protein kinase superfamily protein Cre17.g697050 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated - - - g16906.t1,Cre17.g697050.t1.1 - - - - - - AT5G65840.1 - Thioredoxin superfamily protein Cre03.g184800 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g3830.t1 PF01150 PTHR11782,PTHR11782:SF16 KOG1386 - - GO:0016787 AT2G02970.1 - GDA1/CD39 nucleoside phosphatase family protein Cre11.g468700 CPLD65 - 0 6 1.0 1.0 0 6 1.0 1.0 C Y downregulated 6 - - g11768.t1,Cre11.g468700.t1.1 PF04422,PF04432 - - 1.12.98.1 K00441 - AT1G04620.1 - coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family Cre06.g307150 AMYB1,AMB1 - 0 1 1.0 nan 0 1 1.0 nan M Y - 17 Beta-amylase Beta-Amylase (alpha 1,4-glucan maltohydrolase; EC 3.2.1.2) hydrolyzes the alpha 1,4-glucosidic linkages of starch from the nonreducing ends. Previously annotated as AMYB1 g7114.t1,AMB1 PF01373 - - 3.2.1.2 K01177 GO:0000272,GO:0016161 AT4G17090.1 BAM3,BMY8,CT-BMY chloroplast beta-amylase Cre03.g203150 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 9 - - g4256.t1 - - - - - - - - - Cre03.g194650 AOA1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g4031.t1,AOA1 PF00561 PTHR10794,PTHR10794:SF20 - - K13696 - AT3G50790.1 - esterase/lipase/thioesterase family protein Cre14.g632767 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g15248.t1,Cre75.g795400.t1.1 PF01451 PTHR11717,PTHR11717:SF7 KOG3217 3.1.3.48 K01104 GO:0004725,GO:0006470 AT3G44620.1 - protein tyrosine phosphatases;protein tyrosine phosphatases Cre09.g389393 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 4 - - g9640.t1,Cre02.g124400.t1.1 - - - - - - - - - Cre16.g684850 TMG7 - 0 1 1.0 nan 0 1 1.0 nan M n - 2 - - g16401.t1,Cre16.g684850.t1.1,TMG7 PF02390 PTHR23417:SF1,PTHR23417 - - - GO:0006400,GO:0008176 AT5G17660.1 - tRNA (guanine-N-7) methyltransferase Cre12.g534650 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g13149.t1 PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT4G38470.1 - ACT-like protein tyrosine kinase family protein Cre16.g676402 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 2 - - g16589.t1 - - - - - - - - - Cre16.g676400 HEL63 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g16588.t1,Cre16.g676400.t1.1,HEL63 PF00271,PF00270 PTHR24031,PTHR24031:SF45 KOG0334 3.6.4.13 K12811 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G20920.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre02.g141800 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 16 - - g2655.t1,Cre02.g141800.t1.1 PF00069 PTHR24361:SF113,PTHR24361 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre02.g141806 PTK16 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 16 Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g2732.t1,Cre15.g647000.t1.1,PTK16 PF07714 PTHR23257 KOG1187 - - GO:0004672,GO:0006468 AT1G67890.1 - PAS domain-containing protein tyrosine kinase family protein Cre16.g677750 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 17 - - g16561.t1,Cre16.g677750.t1.1 - - - - - - - - - Cre08.g360950 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g8452.t1 - - - - - - - - - Cre10.g465793 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g11416.t1 - PTHR13078,PTHR13078:SF14 - - - - - - - Cre17.g709350 SYP5 - 0 1 1.0 nan 0 1 1.0 nan O Y - 1 Late endosomal Qc-SNARE protein, Syx8/Syntaxin8-family (Qc.III.c) Qc-SNARE protein, Syx8/Syntaxin8-family. Expressed Protein. Involved in Golgi/Late Endosomal (lysosome/vacuole) trafficking. Class Qc.III.c SNARE, targeted to late endosomes (PMID: 17596510). Previously annotated as SYP5 g17182.t1,Cre17.g709350.t1.1 PF05739 PTHR12380,PTHR12380:SF11 KOG3202 - K08503 GO:0005515 AT1G16240.1 ATSYP51,SYP51 syntaxin of plants 51 Cre06.g257700 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 11 - - g5793.t1 - - KOG4674 - - - - - - Cre08.g363600 TPT11 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g8516.t1,Cre08.g363600.t1.1,TPT11 PF03151,PF00892 PTHR11132 KOG1441 - - GO:0016020 AT1G53660.1 - nodulin MtN21 /EamA-like transporter family protein Cre17.g698850 ISA2 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 Isoamylase-type starch debranching enzyme Putative isoamylase-type starch debranching enzyme g16950.t1,ISA2 - PTHR10357,PTHR10357:SF63 KOG0470 - - - AT1G03310.1 ATISA2,BE2,DBE1,ISA2 debranching enzyme 1 Cre17.g744697 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g18010.t1,Cre20.g760000.t1.1,Cre20.g760000.t1.2 - - - - - - - - - Cre03.g179450 SRR7 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 11 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g3714.t1,SRR7 PF00530 PTHR19331,PTHR19331:SF379 - 3.4.21.- K09624 GO:0005044,GO:0016020 - - - Cre16.g655800 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 13 - - g15853.t1 - - - - - - - - - Cre16.g685600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g16385.t1,Cre16.g685600.t1.1 - - - - - - - - - Cre03.g178500 RIB43,RIB43A - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 12 Flagellar protofilament ribbon protein Coiled-coil protein associated with protofilament ribbons of flagellar microtubules [PMID: 10637302]. Previously annotated as RIB43A after the associated Pfam family g3696.t1,Cre03.g178500.t1.1,RIB43,RIB43A PF05914 PTHR14517,PTHR14517:SF3 - - - - - - - Cre02.g098050 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g1994.t1,Cre02.g098050.t1.1 - - - - - - AT3G51970.1 ASAT1,ATASAT1,ATSAT1 acyl-CoA sterol acyl transferase 1 Cre06.g289850 SBE1 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 8 Starch Branching Enzyme Starch branching enzyme (SBE); SBE catalyses the formation of alpha-1,6 linkages within the polymer by cleaving a preexisting linear chain and transferring the fragment at the non reducing end of the cleaved glucan to an alpha-1,6 position g6725.t1 PF00128,PF02806,PF02922 PTHR10357:SF27,PTHR10357 KOG0470 - - GO:0003824,GO:0005975,GO:0043169,GO:0004553 AT5G03650.1 SBE2.2 starch branching enzyme 2.2 Cre03.g175100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 6 - - g3616.t1, g3616.t2 - PTHR12406:SF25,PTHR12406 - - - - - - - Cre09.g403071 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g10035.t1,Cre02.g120600.t1.1 - - - - - - - - - Cre06.g311600 RFK3 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7208.t1,Cre06.g311600.t1.1,RFK3 PF01687,PF00702 PTHR22749 KOG3110 2.7.1.26 K00861 GO:0008531,GO:0009231,GO:0003824,GO:0008152 AT4G21470.1 ATFMN/FHY,FMN/FHY riboflavin kinase/FMN hydrolase Cre12.g540076 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g13783.t1,Cre27.g774150.t1.1 PF08644,PF00557,PF08512 PTHR13980,PTHR13980:SF12 KOG1189 - - GO:0009987 AT4G10710.1 SPT16 global transcription factor C Cre06.g282750 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g6575.t1 - PTHR24414:SF193,PTHR24414 - - - - - - - Cre10.g461300 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated - - - g11309.t1, g11309.t2, g11309.t3 - - - - - - - - - Cre07.g328600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g7643.t1 PF00400 PTHR15574,PTHR15574:SF16 - - - - AT4G35140.1 - Transducin/WD40 repeat-like superfamily protein Cre08.g382100 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 16 - - g8990.t1,Cre08.g382100.t1.1 - PTHR11584:SF273,PTHR11584 - - - - - - - Cre09.g396065 ALK5 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 Aurora-like kinase - g9826.t1,Cre02.g132650.t1.1,ALK5 PF00069 PTHR24349:SF96,PTHR24349 KOG0581 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre06.g284750 EFG3 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 5 Elongation factor-like protein GRP-binding, eukaryotic elongation factor-like protein. Similarity to yeast Hbs1p which plays a role in nonsense-mediated decay g6621.t1,Cre06.g284750.t1.1,EFG3 PF00009,PF03143 PTHR23115:SF36,PTHR23115 KOG0459 - K03267 GO:0003924,GO:0005525 AT1G18070.1 - Translation elongation factor EF1A/initiation factor IF2gamma family protein Cre12.g516700 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g12744.t1,Cre12.g516700.t1.1 - - - - - - - - - Cre16.g673057 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g16708.t1,Cre01.g065367.t1.1 - - - - - - - - - Cre06.g298200 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 3 - - g6897.t1 - - - - - - - - - Cre16.g673050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g16663.t1 - - - - - - - - - Cre10.g456900 FPN4 - 0 6 1.0 1.0 0 6 1.0 1.0 M n downregulated 18 - - g11211.t1,Cre10.g456900.t1.1,FPN4 PF05761 PTHR12103:SF1,PTHR12103 KOG2469 - - - AT1G75210.1 - HAD-superfamily hydrolase, subfamily IG, 5\'-nucleotidase Cre14.g625251 - 0 1 1.0 nan 0 1 1.0 nan SP n - 18 - - g15062.t1,Cre14.g625251.t1.1 - PTHR23320 - - - - - - - Cre02.g081900 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 - - g1500.t1,Cre02.g081900.t1.1 - - - - - - - - - Cre17.g715800 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - - - - g17327.t1 PF05548 - - - - - - - - Cre10.g457050 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 15 - - g11214.t1,Cre10.g457013.t1.2 - PTHR24420 KOG1187 - - - AT2G45910.1 - U-box domain-containing protein kinase family protein Cre03.g190150 CGL1 - 0 1 1.0 nan 0 1 1.0 nan C Y - - Predicted protein Conserved expressed protein of unknown function; putative plastid protein g3937.t1 PF11833 - - - - - AT2G20920.1 - Protein of unknown function (DUF3353) Cre15.g636250 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 8 - - g15348.t1,Cre15.g636250.t1.1 - - - - - - - - - Cre12.g533850 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g13131.t1 - - - - - - - - - Cre06.g258500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g5811.t1 - - - - - - - - - Cre13.g587700 SDR33 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 16 - - g14417.t1,Cre13.g587700.t1.1,SDR33 PF00106 PTHR24316:SF98,PTHR24316 KOG1208 - - GO:0008152,GO:0016491 AT4G24050.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre03.g160350 ANK7 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 1 Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g3285.t1,Cre03.g160350.t1.1,ANK7 PF00023,PF00069 PTHR23257 - - - GO:0005515,GO:0004672,GO:0005524,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre14.g623950 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g15037.t1, g15037.t2 PF07714 PTHR23257 - - - GO:0004672,GO:0006468 AT2G17700.1 - ACT-like protein tyrosine kinase family protein Cre06.g283400 CGL101,SPH2 - 0 5 1.0 1.0 0 5 1.0 1.0 C Y - 8 - - g6590.t1,Cre06.g283400.t1.1,SPH2 PF05116 PTHR12526,PTHR12526:SF2 - - - - AT2G35840.1 - Sucrose-6F-phosphate phosphohydrolase family protein Cre16.g665550 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g16064.t2, g16064.t1,Cre16.g665550.t1.1 - - - - - - - - - Cre09.g399916 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9280.t1,Cre09.g399700.t1.2 - - - - - - - - - Cre08.g381450 OPR35 - 0 12 1.0 1.0 0 12 1.0 1.0 M n downregulated 11 - - g8976.t1, g8976.t2,Cre08.g381450.t1.1 - - - - - - - - - Cre09.g399912 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n downregulated 11 - - g9277.t1 PF02714 PTHR13018:SF5,PTHR13018 KOG1134 - - GO:0016020 AT4G02900.1 - ERD (early-responsive to dehydration stress) family protein Cre01.g037400 CYN19-1,CYN3 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, possible splicing factor Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID: 15047905] similar to At2g16600 (AtCYP19-1) and other cytosolic cyclophilins. Previously annotated as CYN19-1. Has homology to mRNA splicing factor SYF2 g838.t1,CYN3 PF08231,PF00160 PTHR11071:SF157,PTHR11071 KOG0865 5.2.1.8 K01802 GO:0003755,GO:0006457 AT5G58710.1 ROC7 rotamase CYP 7 Cre12.g493500 SOX1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 13 - - g12080.t1,Cre12.g493500.t1.1,SOX1 PF01266 PTHR10961 KOG2820 1.5.3.1,1.5.3.7 K00306 GO:0016491 AT2G24580.1 - FAD-dependent oxidoreductase family protein Cre02.g092750 SSA18,RRM3 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 3 Putative ribosomal RNA methyltransferase Putative ribosomal RNA methyltransferase; identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA). Previously annotated as SSA18 g1739.t1,RRM3,SSA18 PF01728,PF01585 PTHR16121 - 2.1.1.- K14590 GO:0003676,GO:0008168,GO:0032259,GO:0005622 - - - Cre07.g315326 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7295.t1 - - - - - - - - - Cre07.g327600 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7620.t1, g7620.t2,Cre07.g327600.t1.1 PF04366 - - - - - - - - Cre01.g035800 IRK2 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 8 Inwardly-rectifying potassium channel Putative inward rectifier K+ channel g806.t1,Cre01.g035800.t1.1,IRK2 PF01007 PTHR11767:SF34,PTHR11767 KOG3827 - - GO:0005242,GO:0006813,GO:0016020 - - - Cre03.g144504 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 10 - - g2889.t1,Cre01.g057400.t1.1,Cre01.g057400.t1.2 - - - - - - - - - Cre12.g484450 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g12025.t1 - - - - - - - - - Cre02.g145000 RBF1 - 0 2 1.0 1.0 0 2 1.0 1.0 M Y - 1 - - g2569.t1,RBF1 PF02033 - - - K02834 GO:0006364 AT4G34730.1 - ribosome-binding factor A family protein Cre06.g270800 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g6076.t1,Cre06.g270800.t1.1 - - - - - - - - - Cre02.g106000 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated - - - g2173.t1 - PTHR12846 - 6.3.2.19 K10693 - - - - Cre12.g517150 APR1,MET16 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Adenylylphosphosulfate reductase Adenylylphosphosulfate reductase involved in sulfate assimilation; 3\'-phosphoadenylsulfate reductase, APS reductase; not a PAPS reductase, based on presence of motifs described in PMID: 12072441; previously annotated as APR and MET16 g12754.t1,APR1,MET16 PF01507,PF00085 PTHR18929 KOG0189 1.8.4.9 K05907 GO:0003824,GO:0008152,GO:0045454 AT4G21990.1 APR3,ATAPR3,PRH-26,PRH26 APS reductase 3 Cre16.g674050 ADH12 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 - - g16641.t1,Cre16.g674050.t1.1,ADH12 PF08240,PF00107 PTHR11695,PTHR11695:SF30 KOG1198 - - GO:0008270,GO:0016491,GO:0055114 AT3G56460.1 - GroES-like zinc-binding alcohol dehydrogenase family protein Cre08.g370200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 9 - - g8676.t1,Cre08.g370200.t1.1, g8676.t2 PF00856 PTHR22884 - - - GO:0005515 AT1G05830.1 ATX2,SDG30 trithorax-like protein 2 Cre08.g364726 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g8539.t1 - - - - - - - - - Cre16.g684155 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 10 - - g16810.t1,Cre01.g069800.t1.1 PF09724 PTHR13395 KOG0798 - K11271 - AT2G44580.1 - zinc ion binding Cre04.g231614 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated - - - g5053.t1,Cre32.g781500.t1.1 PF00560 PTHR23155 - - - GO:0005515 AT3G11330.1 PIRL9 plant intracellular ras group-related LRR 9 Cre12.g523650 HLM19 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 - - g12894.t1,Cre12.g523650.t1.1,HLM19 PF00856 PTHR12197,PTHR12197:SF78 - - - GO:0005515 AT1G26760.1 ATXR1,SDG35 SET domain protein 35 Cre02.g097950 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated - - - g1992.t1,Cre02.g097950.t1.1 - - - - - - - - - Cre10.g430550 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g10632.t1,Cre10.g430550.t1.1 - - - - - - - - - Cre17.g707600 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g17143.t1,Cre17.g707600.t1.1, g17143.t2 - - - - - - - - - Cre13.g573900 NSS3 - 0 1 1.0 nan 0 1 1.0 nan SP n - 4 - - g14108.t1,Cre13.g573900.t1.1,NSS3 PF00474 PTHR11819,PTHR11819:SF45 KOG2349 - - GO:0005215,GO:0006810,GO:0016020,GO:0055085 - - - Cre01.g038600 FAD7 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 5 Chloroplast glycerolipid omega-3-fatty acid desaturase - g864.t1,Cre01.g038600.t1.1 PF00487,PF11960 PTHR19353,PTHR19353:SF7 - 1.14.19.- K10257 GO:0006629,GO:0016491,GO:0055114,GO:0016717 AT3G11170.1 FAD7,FADD fatty acid desaturase 7 Cre03.g161550 FAP55 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g3311.t1,Cre03.g161550.t1.1 - - - - - - - - - Cre13.g606101 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 11 - - g14616.t1,Cre13.g606100.t1.3 - PTHR19959 - - - - - - - Cre03.g146107 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g2970.t1,Cre01.g060750.t1.1 - - - - - - - - - Cre02.g090451 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 11 - - g1689.t1,Cre02.g090450.t1.3 - - - - - - - - - Cre09.g389250 AOF1 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 Amine oxidase, flavin-containing Amine oxidase, flavin-containing; amine oxidase:FAD dependent oxidoreductase. Possible polyamine oxidase g9513.t1,Cre09.g389250.t1.1,AOF1 PF01593 PTHR10742:SF61,PTHR10742 KOG0029 - - - AT4G16310.1 LDL3 LSD1-like 3 Cre16.g694206 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g15594.t1,Cre72.g794707.t1.1,Cre72.g794707.t1.2 - PTHR24412:SF248,PTHR24412 - - - - - - - Cre02.g113850 HEM3,PBGD2 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 10 Porphobilinogen deaminase Porphobilinogen deaminase, chloroplast precursor; Hydroxymethylbilane synthase; Pre-uroporphyrinogen synthase; PBGD; HMBS; HEM3; HEMC; Predicted chloroplast transit peptide 1-53 [PMID: 1986793; PMID: 8192681] g2350.t1,HEM3 PF01379 PTHR11557 KOG2892 - - GO:0033014,GO:0004418 AT5G08280.1 HEMC hydroxymethylbilane synthase Cre17.g745597 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g18028.t1,Cre20.g759350.t1.1 - - - - - - - - - Cre01.g026350 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g605.t1 - - - - - - - - - Cre16.g690750 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g15671.t1, g15671.t2 PF00168 PTHR10024:SF97,PTHR10024 - - - GO:0005515 AT3G61300.1 - C2 calcium/lipid-binding plant phosphoribosyltransferase family protein Cre05.g236250 - 0 10 1.0 1.0 0 10 1.0 1.0 M n - 12 - - g5432.t1 PF00400 PTHR22847:SF222,PTHR22847 KOG0271 - - - AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre13.g591250 EZY20 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g14499.t2,EZY20, g14499.t1,EZY20 - - - - - - - - - Cre09.g415550 ASA2 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 Mitochondrial F1F0 ATP synthase associated 45.5 kDa protein Mitochondrial ATP synthase associated protein 2; unknown evolutionary origin [PMID: 11744727, PMID: 15710684] g10288.t1,Cre09.g415550.t1.1 - - - - - - - - - Cre06.g289000 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 11 - - g6707.t1 - - - - - - - - - Cre08.g371150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8694.t1,Cre08.g371150.t1.1 - - - - - - - - - Cre11.g477050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g11847.t1 - - - - - - - - - Cre01.g023200 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g535.t1,Cre01.g023200.t1.1 - - - - - - - - - Cre07.g320600 - 0 1 1.0 nan 0 1 1.0 nan M n - 6 - - g7413.t1,Cre07.g320600.t1.1 - - - - - - - - - Cre06.g292700 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6781.t1,Cre06.g292700.t1.1 PF00069 PTHR24343,PTHR24343:SF58 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT4G33950.1 ATOST1,OST1,P44,SNRK2-6,SNRK2.6,SRK2E Protein kinase superfamily protein Cre12.g552400 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 12 - - g13490.t1 PF03407 PTHR24015,PTHR24015:SF28 - - - - AT1G28700.1 - Nucleotide-diphospho-sugar transferase family protein Cre06.g293362 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g6795.t1,Cre06.g293362.t1.1 - - KOG1003 - - - - - - Cre17.g737300 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g17833.t1 - - - - - - - - - Cre02.g091500 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 11 - - g1713.t1 - - - - - - - - - Cre06.g248950 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 - - g5576.t1 PF00443,PF01753 PTHR24006,PTHR24006:SF250 KOG1865 - - GO:0004221,GO:0006511,GO:0008270 AT4G31670.1 UBP18 ubiquitin-specific protease 18 Cre14.g618450 - 0 1 1.0 nan 0 1 1.0 nan SP n - 17 - - g14898.t1,Cre14.g618450.t1.1 PF04882 - - - - GO:0005779,GO:0007031 - - - Cre02.g084300 COQ5C,UMM2 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE/COQ5 methyltransferase family. Previously annotated as COQ5C g1555.t1,Cre02.g084300.t1.1,UMM2 PF01209 PTHR10108,PTHR10108:SF236 KOG1540 2.1.1.- K06127 GO:0008168 AT1G23360.1 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre01.g015950 CPL11 - 0 3 1.0 1.0 0 3 1.0 1.0 C Y - 12 Translation factor Translation factor. Conserved expressed organellar protein involved in translation; putative translation factor (SUA5); found in plants and cyanobacteria g380.t1,Cre01.g015950.t1.1 PF01300 PTHR17490 KOG3051 - K07566 - AT3G01920.1 - DHBP synthase RibB-like alpha/beta domain Cre03.g205300 EXN7 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 5 - - g4207.t1,EXN7 PF01612 - - - - GO:0003676,GO:0005622,GO:0006139,GO:0008408 AT2G25910.2 - 3\'-5\' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein Cre17.g720900 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - - - - g17446.t1 - - - - - - - - - Cre10.g435250 NIC13 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g10735.t1,NIC13 PF02540,PF00795 PTHR23090 - 6.3.5.1 K01950 GO:0006807,GO:0016810 AT1G55090.1 - carbon-nitrogen hydrolase family protein Cre09.g407350 NAT23 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g10099.t1,NAT23 PF04832 PTHR11220 - - - - AT1G78460.1 - SOUL heme-binding family protein Cre09.g387615 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g9591.t1,Cre02.g122100.t1.1 PF10497 - - - - - AT4G37110.1 - Zinc-finger domain of monoamine-oxidase A repressor R1 Cre13.g580700 DAL2 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 - - g14264.t1,DAL2 PF07687,PF01546 PTHR11014,PTHR11014:SF27 - - - GO:0016787,GO:0008152 AT4G20070.1 AAH,ATAAH allantoate amidohydrolase Cre16.g691150 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g15662.t1,Cre16.g691150.t1.1 - - - - - - - - - Cre01.g032600 CGL25 - 0 1 1.0 nan 0 1 1.0 nan SP Y - 8 Hypothetical protein Conserved hypothetical protein g737.t1 - - - - - - AT5G13500.1 - - Cre02.g098700 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 16 - - g2007.t1,Cre02.g098700.t1.1 PF01061,PF00005 PTHR19241 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT2G01320.3 - ABC-2 type transporter family protein Cre06.g259476 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g5833.t1 - - - - - - - - - Cre06.g295400 MITC11 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 Mitochondrial substrate carrier protein Present in thylakoid proteome based on mass spectrometric peptide identification; mitochondrial localization assumed [PMID: 17078018]. Previously annotated as MITC11 g6838.t1,Cre06.g295400.t1.1,MITC11 PF00153 PTHR24089:SF114,PTHR24089 KOG0758 - K03454 - AT5G46800.1 BOU Mitochondrial substrate carrier family protein Cre14.g626200 PHX18 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 8 - - g15081.t1,PHX18 PF03171 PTHR10869 - - - GO:0016491 AT3G28480.1 - Oxoglutarate/iron-dependent oxygenase Cre01.g029750 FAK2,FAK1,DAAK1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 3 ODA5-associated flagellar adenylate kinase 3 nearly identical repeats of an adenylate kinase domain; corresponds approximately to GI:46518741; reduced in the flagellum of the outer dynein arm oda5 mutant [PMID: 15064350]. Previously annotated as two distinct FAKs, but no current evidence for this g676.t1,FAK1,FAK2 PF00406 PTHR23359,PTHR23359:SF23 KOG3079 2.7.4.3 K00939 GO:0005524,GO:0006139,GO:0019205 AT5G26667.2 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre12.g560350 CNK2 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 14 NimA-related protein kinase NimA (never-in-mitosis) related kinase homolog 2 [gi:34334393, PMID: 15068267, 16030138]. Found in the flagellar proteome [PMID: 15998802] g13312.t2,CNK2, g13312.t1,CNK2 PF00069 PTHR24362,PTHR24362:SF98 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT3G44200.1 ATNEK6,IBO1,NEK6 NIMA (never in mitosis, gene A)-related 6 Cre07.g357950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g8324.t1,Cre07.g357950.t1.1 PF00023,PF00646 PTHR24198:SF302,PTHR24198 - - - GO:0005515 AT3G12360.1 ITN1 Ankyrin repeat family protein Cre04.g223550 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 15 - - g4879.t1 - - - - - - - - - Cre08.g366000 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g8577.t1,Cre08.g366000.t1.1 PF03647 - KOG4267 - - GO:0016020 AT1G50740.1 - Transmembrane proteins 14C Cre09.g406400 CTP3 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 Heavy metal transporting ATPase P-type ATPase superfamily, membrane protein, related to copper transporting P-type ATPases (HMA) g10074.t1 PF00702,PF00122,PF00403 PTHR24093:SF39,PTHR24093 KOG0207 - - GO:0003824,GO:0008152,GO:0000166,GO:0046872,GO:0030001 AT1G63440.1 HMA5 heavy metal atpase 5 Cre10.g453500 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g11133.t1,Cre10.g453500.t1.1 PF02042 - - - - - - - - Cre01.g013650 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g333.t1 - - KOG2318 - - - AT1G18950.1 - DDT domain superfamily Cre06.g292183 CAM13 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 18 - - g6769.t1,Cre06.g292150.t1.3,CAM13 - - - - - - - - - Cre01.g018600 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g438.t1,Cre01.g018600.t1.1 PF05529 PTHR14955,PTHR14955:SF5 - - - GO:0005783,GO:0006886,GO:0016021 - - - Cre16.g663400 LCI11 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Low-CO2-inducible membrane protein Low-CO2 inducible gene revealed by cDNA analyses. At least four other paralogous genes are conserved in the Chlamydomonas genome. Predicted amino acid sequence is homologous to Arabidopsis hypothetical protein T20K12.220. SOSUI prediction: 1 transmembrane g16016.t2,LCI11, g16016.t1,Cre16.g663400.t1.1,LCI11 PF01062 - - - - - AT3G61320.1 - Bestrophin-like protein Cre01.g044700 GST4 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 5 - - g999.t1,Cre01.g044700.t1.1,GST4 PF02798,PF00043 PTHR11260,PTHR11260:SF79 KOG0406 - - GO:0005515 AT5G16710.1 DHAR3 dehydroascorbate reductase 1 Cre07.g337250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g7847.t1,Cre07.g337250.t1.1 PF01753 PTHR12298 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre10.g436700 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - - - - g10765.t1,Cre10.g436700.t1.1 PF02469 - - - - - - - - Cre14.g622901 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 14 - - g15013.t1 PF00560 PTHR23155 KOG0617 - - GO:0005515 AT5G05850.1 PIRL1 plant intracellular ras group-related LRR 1 Cre17.g733250 FKB7,FKB16-4 - 0 1 1.0 nan 0 1 1.0 nan C Y downregulated 6 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase); probably located in thylakoid lumen (homology to AT3g10060, bipartite TP 27 + RR motif); [PMID: 15701785] g17722.t1,Cre17.g733250.t1.1,FKB7 PF00254 PTHR10516,PTHR10516:SF27 KOG0552 - - GO:0006457 AT3G10060.1 - FKBP-like peptidyl-prolyl cis-trans isomerase family protein Cre09.g396475 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g9837.t1,Cre02.g133131.t1.1 - PTHR24202,PTHR24202:SF267 KOG4172 - - - AT3G01650.1 RGLG1 RING domain ligase1 Cre16.g661800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g15981.t2,Cre16.g661800.t1.1, g15981.t1 PF04949 - - - - - AT5G51840.1 - - Cre05.g238343 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 14 - - g5493.t1 - - - - - - - - - Cre02.g107150 - 0 5 1.0 1.0 0 5 1.0 1.0 C n downregulated 12 - - g2196.t1 - - - - - - - - - Cre02.g097100 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 1 - - g1973.t1,Cre02.g097100.t1.1 PF01697 - - - - - AT3G27330.1 - zinc finger (C3HC4-type RING finger) family protein Cre07.g316150 - 0 1 1.0 nan 0 1 1.0 nan SP n - 17 - - g7312.t1 PF01753 - - - - GO:0008270 AT2G24640.1 UBP19 ubiquitin-specific protease 19 Cre07.g352250 HEL42 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g8192.t1,HEL42, g8192.t2,HEL42 PF00069 PTHR24362,PTHR24362:SF96 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 - - - Cre07.g352251 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g8193.t1 PF00271,PF07717,PF00270,PF04408 PTHR18934:SF68,PTHR18934 KOG0926 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G33390.1 ATFAS4,FAS4 RNA helicase family protein Cre01.g006800 GTR18,GPI1 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 Phosphatidylinositol N-acetylglucosaminyltransferase (PIG-A) Phosphatidylinositol N-acetylglucosaminyltransferase (PIG-A) and glycosyl transferase. Previously annotated as GTR18 g178.t1,GPI1,GTR18 PF00534,PF08288 PTHR12526,PTHR12526:SF37 KOG1111 2.4.1.198 K03857 GO:0009058,GO:0006506 AT3G45100.1 SETH2 UDP-Glycosyltransferase superfamily protein Cre02.g074300 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g1319.t1 PF11707 - - - - - AT4G27010.2 - - Cre01.g038450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g861.t1,Cre01.g038450.t1.1 - - - - - - - - - Cre07.g355700 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g8271.t1,Cre07.g355700.t1.1 PF01585 PTHR23329,PTHR23329:SF2 - - - GO:0003676,GO:0005622 AT2G24830.1 - zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein Cre13.g565900 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g13927.t1 PF10513 - - - - - - - - Cre07.g336250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g7826.t1,Cre07.g336250.t1.1 PF09725 PTHR11567,PTHR11567:SF25 KOG1297 - K13121 - AT4G15030.1 - - Cre13.g584700 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 - - g14352.t1 PF02636 PTHR12049 - - - - AT1G04900.1 - Protein of unknown function (DUF185) Cre16.g656200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g15861.t1,Cre16.g656200.t1.1 PF00612 PTHR19959 - - K10407 GO:0005515 AT3G52140.4 - tetratricopeptide repeat (TPR)-containing protein Cre03.g145827 - 0 14 1.0 1.0 0 14 1.0 1.0 O n downregulated - - - g2956.t1,Cre01.g060100.t1.1 PF00082 PTHR10795,PTHR10795:SF157 - - - GO:0004252,GO:0006508 AT1G62340.1 ALE,ALE1 PA-domain containing subtilase family protein Cre03.g202350 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - - - g4273.t1 - PTHR11017 - - - - - - - Cre02.g142600 - 0 1 1.0 nan 0 1 1.0 nan - n - 3 - - g2635.t1 - - - - - - - - - Cre13.g564050 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g13879.t1 - - - - - - AT5G27390.1 - Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein Cre03.g151550 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g3084.t1 - - - - - - - - - Cre03.g187100 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - - - - g3876.t1 - - - - - - - - - Cre12.g525300 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n downregulated 15 - - g12928.t1 PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre14.g611950 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 5 - - g14748.t1 - - - - - - AT1G64430.1 - Pentatricopeptide repeat (PPR) superfamily protein Cre10.g443950 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n upregulated - - - g10914.t1 PF05049,PF04564 PTHR26393,PTHR26393:SF497 - - - GO:0005525,GO:0016020,GO:0016817,GO:0000151,GO:0004842,GO:0016567 AT1G01660.1 - RING/U-box superfamily protein Cre10.g430700 - 0 19 1.0 1.0 0 19 1.0 1.0 O n - 13 - - g10636.t1 - - - - - - - - - Cre09.g402404 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 17 - - g10017.t1,Cre02.g140150.t1.1,Cre02.g140150.t1.2 - - - - - - - - - Cre09.g402402 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g9215.t1 - - - - - - - - - Cre09.g402400 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g9214.t1 - - - - - - - - - Cre01.g049550 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g1099.t1,Cre01.g049550.t1.1 - - - - - - AT4G11790.1 - Pleckstrin homology (PH) domain superfamily protein Cre01.g040701 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 - - g912.t1,Cre01.g040700.t1.3 - - - - - - - - - Cre12.g531950 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 16 - - g13089.t2, g13089.t1 PF07885,PF00027 PTHR10217:SF24,PTHR10217 KOG0500 - - - AT5G37500.1 GORK gated outwardly-rectifying K+ channel Cre01.g014850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g359.t1,Cre01.g014850.t1.1 PF03556 PTHR12281 KOG3077 - - - AT3G12760.1 - - Cre06.g255750 EZY1 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - Early zygote expressed chloroplast nucleoid localized protein Unknown protein, zygote-specific, originally called Class III, member of a tandemly repeated gene family [PMID: 3614194]; localizes to chloroplast nucleoids, expression is suppressed after UV treatment of plus gametes, postulated involvement in uniparenta g5748.t1 - - - - - - - - - Cre02.g114250 MEN2 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 Naphthoate synthase Putative naphthoate synthase [=menB]. Evolutionarily related to enoyl-CoA hydratase/isomerase g2359.t1,Cre02.g114250.t1.1,MEN2 PF00378 PTHR11941 KOG1680 4.1.3.36 K01661 GO:0003824,GO:0008152 AT1G60550.1 DHNS,ECHID enoyl-CoA hydratase/isomerase D Cre09.g388393 ELG13 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 6 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g9612.t1,Cre02.g123100.t1.1,ELG13 PF03016 PTHR11062,PTHR11062:SF20 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre08.g365720 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 17 - - g8569.t1 - - - - - - - - - Cre09.g398300 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g9315.t1 - - - - - - - - - Cre09.g400800 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g9252.t1,Cre09.g400800.t1.1 PF00069 PTHR26392:SF124,PTHR26392 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G38210.1 - Protein kinase family protein Cre10.g444450 SSA17 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Predicted protein Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA) g10928.t1,SSA17 PF00397 PTHR21715 KOG0977 - - GO:0005515 - - - Cre03.g186850 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g3871.t1 - - - - - - - - - Cre08.g383200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g9022.t1,Cre08.g383200.t1.1 - - KOG2812 - - - - - - Cre08.g374600 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g8825.t1 - - - - - - - - - Cre03.g176100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g3637.t1,Cre03.g176100.t1.1 PF02037 PTHR12381,PTHR12381:SF2 KOG4259 - - GO:0003676 AT5G02770.1 - - Cre10.g461895 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g11323.t1,Cre10.g461895.t1.1 - - - - - - - - - Cre03.g180450 FAP215,FPN1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 5\'-nucleotidase and Flagellar Associated Protein 5\'-nucleotidase and conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]. Previously annotated as FAP215 g3740.t1,Cre03.g180450.t1.1,FPN1 PF02872 PTHR11575,PTHR11575:SF8 KOG4419 3.1.3.5 K01081 GO:0009166,GO:0016787 - - - Cre10.g428664 FAP163 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 - - g10586.t1 - PTHR12442,PTHR12442:SF30 - - - - - - - Cre01.g023050 UBX2 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 - - g532.t1,Cre01.g023050.t1.1,UBX2 PF09409 - - - - - AT2G01650.1 PUX2 plant UBX domain-containing protein 2 Cre01.g024000 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g555.t1 - - - - - - - - - Cre08.g379450 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 9 - - g8933.t1 PF02837,PF02836,PF02929 PTHR10066:SF41,PTHR10066 - 3.2.1.23 K01190 GO:0004553,GO:0005975,GO:0004565,GO:0009341 AT3G54440.2 - glycoside hydrolase family 2 protein Cre12.g549250 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g13563.t1 PF04564 PTHR22849 - - - GO:0000151,GO:0004842,GO:0016567 AT5G61550.2 - U-box domain-containing protein kinase family protein Cre10.g432700 SMP10 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 U6 snRNA-associated Sm-like small nuclear riboprotein LSm10 (LSm2-like) - g10676.t1,SMP10 PF01423 PTHR13829 KOG3428 - - - AT1G20580.1 - Small nuclear ribonucleoprotein family protein Cre17.g741750 - 0 12 1.0 1.0 0 12 1.0 1.0 SP n - 11 - - g17940.t1 - - KOG4674 - - - AT1G05320.1 - - Cre06.g304800 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g7055.t1,Cre06.g304800.t1.1 - PTHR11216,PTHR11216:SF34 - - - - AT1G21630.1 - Calcium-binding EF hand family protein Cre14.g618150 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 11 - - g14892.t1,Cre14.g618150.t1.1 PF07058 - - - - - AT1G24764.1 ATMAP70-2,MAP70-2 microtubule-associated proteins 70-2 Cre09.g403441 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10047.t1 - - - - - - - - - Cre12.g524950 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 1 - - g12922.t1 PF01926 PTHR11649 KOG2486 - - GO:0005525,GO:0005622 AT2G22870.1 EMB2001 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre12.g505050 - 0 7 1.0 1.0 0 7 1.0 1.0 C n upregulated 2 - - g12467.t1,Cre12.g505050.t1.1 PF00646 - - - - GO:0005515 - - - Cre10.g458500 AHD2,ASK1 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 4 Aspartate kinase Aspartate kinase, monofunctional (EC:2.7.2.4); possibly plastid targeted, based on Target-P prediction. Previously annotated as ASK1 g11247.t1,Cre10.g458500.t1.1,AHD2,ASK1 PF01842,PF00696 PTHR21499:SF11,PTHR21499 KOG0456 2.7.2.4 K00928 GO:0008152,GO:0016597,GO:0008652 AT5G13280.1 AK,AK-LYS1,AK1 aspartate kinase 1 Cre17.g710900 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g17217.t1,Cre17.g710900.t1.1 - - - - - - AT4G25030.1 - - Cre06.g306400 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 - - g7098.t1,Cre06.g306400.t1.1 PF00155 PTHR11751:SF161,PTHR11751 KOG0256 4.4.1.14 K01762 GO:0009058,GO:0016769,GO:0030170 AT4G37770.1 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 Cre14.g619400 - 0 16 1.0 1.0 0 16 1.0 1.0 O n - 12 - - g14926.t1,Cre14.g619400.t1.1 - - KOG0956 - - - - - - Cre16.g675550 FKB16-2,FKB5 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase), orthologous to At5g45680; isoform a of gene FKB16-2, probably directed to thylakoid lumen (TP length 26, RR motif); other splicing isoforms possibly directed to stroma or mito g16607.t3,FKB5, g16607.t1,FKB5, g16607.t2,Cre16.g675550.t1.1,FKB5 PF00254 PTHR10516 KOG0544 5.2.1.8 K01802 GO:0006457 AT5G45680.1 ATFKBP13,FKBP13 FK506-binding protein 13 Cre09.g386137 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g9090.t1,Cre29.g777750.t1.1 PF06824 - - - K09704 - - - - Cre17.g699700 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 16 - - g16968.t1 - - - - - - - - - Cre04.g213100 CGLD7 - 0 3 1.0 1.0 0 3 1.0 1.0 C Y - 6 Esterase-like protein Conserved, expressed esterase / lipase / thioesterase family protein g4716.t1 - PTHR10992,PTHR10992:SF243 KOG1454 - - - AT5G38360.1 - alpha/beta-Hydrolases superfamily protein Cre03.g184750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g3829.t1 PF08524 - - - - - - - - Cre13.g585550 HAP2 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 6 Putative haloperoxidase Contains a PAP2/haloperoxidase domain found in vanadium chloroperoxidases and related to phosphoesterases; closely related to upstream divergent HAP1 gene, and to unlinked HAP3; all available ESTs are from stress I and stress II libraries. Characterized b g14372.t1,HAP2 - - - - - - - - - Cre07.g323650 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g7476.t1,Cre07.g323650.t1.1 PF05536 - - - - - AT4G32050.1 - neurochondrin family protein Cre02.g077024 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 10 - - g1387.t1 - - KOG4462 - - - - - - Cre06.g268228 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g6018.t1,Cre06.g268228.t1.1 - - - - - - - - - Cre07.g357033 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 - - g8302.t1, g8302.t2 - - - - - - - - - Cre17.g699300 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g16960.t1 - - - - - - - - - Cre03.g183900 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g3811.t1,Cre03.g183900.t1.1 - - - - - - - - - Cre05.g240900 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n downregulated 15 - - g5555.t2,Cre05.g240900.t1.1, g5555.t1 - - - - - - - - - Cre18.g749397 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g18104.t1 - - - - - - - - - Cre03.g188100 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 1 - - g3897.t1,Cre03.g188100.t1.1 - PTHR23125:SF33,PTHR23125 - - - - AT5G27920.1 - F-box family protein Cre10.g464200 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated 6 - - g11374.t1 - - - - - - - - - Cre02.g141350 FAP84,DRC10 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g2663.t1,Cre02.g141350.t1.1,FAP84 - - - - - - - - - Cre12.g490250 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g12180.t1,Cre12.g490250.t1.1 PF12612 PTHR12658 KOG1943 - - - AT3G60740.1 CHO,EMB133,TFC D,TTN1 ARM repeat superfamily protein Cre02.g104450 - 0 7 1.0 1.0 0 7 1.0 1.0 M n downregulated 15 - - g2137.t1, g2137.t2 PF07714 PTHR23257,PTHR23257:SF99 KOG1187 - - GO:0004672,GO:0006468 AT2G45910.1 - U-box domain-containing protein kinase family protein Cre03.g193500 CGLD15,TGL8 - 0 1 1.0 nan 0 1 1.0 nan O n - 18 Triacylglycerol lipase Conserved expressed protein related to triacylglycerol lipase. Previously annotated as CGLD15 g4003.t1,Cre03.g193500.t1.1,TGL8 PF01764 - - - - GO:0004806,GO:0006629 AT3G61680.1 - alpha/beta-Hydrolases superfamily protein Cre16.g663876 - 0 1 1.0 nan 0 1 1.0 nan M n - 6 - - g16029.t1 PF00415 PTHR22870:SF59,PTHR22870 - - - - AT5G16040.1 - Regulator of chromosome condensation (RCC1) family protein Cre08.g363950 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 7 - - g8523.t1 PF07819 PTHR15495:SF7,PTHR15495 - - - GO:0006505,GO:0006886,GO:0016788,GO:0031227 AT3G27325.2 - hydrolases, acting on ester bonds Cre03.g189050 EAM1 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 12 - - g3915.t1,EAM1 - PTHR13572 - 3.2.1.- K01238 - - - - Cre17.g743847 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 9 - - g17992.t1,Cre20.g760800.t1.1 PF00076,PF04564 PTHR22849 KOG0131 - - GO:0003676,GO:0000151,GO:0004842,GO:0016567 AT1G67530.1 - ARM repeat superfamily protein Cre06.g278199 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 10 - - g6342.t1,Cre13.g598250.t1.1 PF03055 PTHR10543,PTHR10543:SF1 - - - - AT2G44990.1 ATCCD7,CCD7,MAX3 carotenoid cleavage dioxygenase 7 Cre06.g278198 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g6341.t1,Cre13.g598200.t1.1 - PTHR16557 - - K10765 - AT1G11780.1 - oxidoreductase, 2OG-Fe(II) oxygenase family protein Cre06.g278194 FAP236 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g6337.t1,Cre13.g598000.t1.1,Cre13.g598000.t1.2 - - - - - - - - - Cre06.g278197 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 9 - - g6340.t1,Cre13.g598150.t1.1 PF02902 PTHR12438:SF7,PTHR12438 - - - GO:0006508,GO:0008234 AT1G09730.1 - Cysteine proteinases superfamily protein Cre06.g278196 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g6339.t1,Cre13.g598100.t1.1,Cre13.g598100.t1.2 PF01575 - - - - GO:0008152,GO:0016491 - - - Cre06.g278193 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g6336.t1,Cre13.g597950.t1.1 - - - - - - - - - Cre06.g278192 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 1 - - g6335.t1,Cre13.g597900.t1.1 PF03942 PTHR15627:SF10,PTHR15627 KOG3795 - - - - - - Cre03.g169950 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 7 - - g3499.t1 PF02375,PF02373 PTHR10694,PTHR10694:SF8 - - - - AT1G08620.1 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein Cre16.g673250 NRR1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g16657.t1 PF03110 - - - - GO:0003677,GO:0005634 AT1G20980.1 ATSPL14,FBR6,SPL14,SPL1R2 squamosa promoter binding protein-like 14 Cre16.g668600 - 0 6 1.0 1.0 0 6 1.0 1.0 C n upregulated 4 - - g16263.t1,Cre16.g668600.t1.1 - - - - - - AT2G42975.1 - - Cre16.g688901 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 - - g16173.t1,Cre16.g688901.t1.1 PF07701,PF00211,PF07700 PTHR11920:SF140,PTHR11920 KOG4171 - - GO:0004383,GO:0006182,GO:0009190,GO:0016849,GO:0035556,GO:0020037 - - - Cre16.g666334 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 18 - - g16082.t2,Cre16.g666450.t1.3,Cre16.g666451.t1.1, g16082.t1,Cre16.g666450.t3.1, g16082.t3,Cre16.g666450.t2.1 PF05691 - - - - - AT3G57520.1, AT1G55740.1 AtSIP2,SIP2, AtSIP1,SIP1 seed imbibition 1, seed imbibition 2 Cre17.g705250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g17093.t1 PF01822 - - - - - - - - Cre03.g165250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g3390.t1 PF01248 PTHR13284,PTHR13284:SF4 - - - - - - - Cre03.g206033 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g4421.t1,Cre19.g754351.t1.1,Cre19.g754351.t1.2 PF03188 PTHR23130,PTHR23130:SF18 KOG4293 - - GO:0016021 AT5G47530.1 - Auxin-responsive family protein Cre06.g278229 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g6371.t1,Cre13.g599750.t1.1 PF03110 - - - - GO:0003677,GO:0005634 AT1G20980.1 ATSPL14,FBR6,SPL14,SPL1R2 squamosa promoter binding protein-like 14 Cre06.g278228 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g6370.t1,Cre13.g599700.t1.1 - - - - - - - - - Cre09.g407600 TEN1 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g10105.t1,Cre09.g407600.t1.1,TEN1 PF03070 - - - - - AT3G16990.1 - Haem oxygenase-like, multi-helical Cre06.g278221 TPS1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 Trehalose-6-phosphate synthase/phosphatase Trehalose-6-phosphate synthase/phosphatase, a glycosyl transferase g6363.t1,Cre13.g599350.t1.1,TPS1 PF02358,PF00982 PTHR10788 KOG1050 2.4.1.15,3.1.3.12 K00697,K01087 GO:0003824,GO:0005992 AT1G70290.1 ATTPS8,ATTPSC,TPS8 trehalose-6-phosphatase synthase S8 Cre06.g278220 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 10 - - g6362.t1,Cre13.g599300.t1.1,Cre13.g599300.t1.2 PF03016 PTHR11062,PTHR11062:SF20 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre06.g278227 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g6369.t1 - PTHR23151,PTHR23151:SF9 - - - - AT3G52200.2 LTA3 Dihydrolipoamide acetyltransferase, long form protein Cre06.g278226 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 8 - - g6368.t1,Cre13.g599600.t1.1,Cre13.g599600.t1.2 PF08016 PTHR23151,PTHR23151:SF9 - - - - - - - Cre11.g467607 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11536.t1,Cre18.g748200.t1.1 - PTHR24362,PTHR24362:SF96 - - - - - - - Cre10.g426950 CYP739A3,CYP30 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 13 Cytochrome P450, CYP213 superfamily Cytochrome P450, CYP213 superfamily. The CYP85 clan families CYP85 and CYP90 make brassinosteroids in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols739A3 g10549.t1,Cre10.g426950.t1.1,CYP30 PF00067 PTHR24305 KOG0684 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT5G45340.2 CYP707A3 cytochrome P450, family 707, subfamily A, polypeptide 3 Cre11.g467605 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 15 - - g11534.t1,Cre18.g748250.t1.1 - - - - - - - - - Cre11.g467604 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g11533.t1,Cre18.g748300.t1.1 - - - - - - - - - Cre11.g467603 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g11532.t1 - - - - - - - - - Cre11.g467601 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 6 - - g11530.t1,Cre18.g748450.t1.1,Cre18.g748450.t1.2 PF00168 PTHR10774 KOG1030 - - GO:0005515 AT4G34150.1 - Calcium-dependent lipid-binding (CaLB domain) family protein Cre03.g144344 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 16 - - g2881.t2, g2881.t3, g2881.t1 PF04564 PTHR24420,PTHR24420:SF528 - - - GO:0000151,GO:0004842,GO:0016567 AT5G61560.1 - U-box domain-containing protein kinase family protein Cre11.g467609 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 16 - - g11539.t1,Cre18.g748100.t1.1 PF00632 PTHR11254,PTHR11254:SF121 KOG0940 - - GO:0005622,GO:0006464,GO:0016881 AT1G70320.1 UPL2 ubiquitin-protein ligase 2 Cre11.g467608 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n - 11 - - g11537.t2, g11537.t1 PF05548,PF11617 - - - - - - - - Cre09.g399363 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g9917.t1,Cre02.g136550.t1.1 - - - - - - - - - Cre24.g755447 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g18257.t1,Cre05.g231300.t1.1,Cre05.g231300.t1.2 PF04889 PTHR12718 KOG3228 - K12863 GO:0000398,GO:0005681 AT3G13200.1 EMB2769 Cwf15 / Cwc15 cell cycle control family protein Cre01.g063632 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g1266.t1,Cre23.g766700.t1.1 PF00730,PF07934 PTHR10242 KOG2875 3.2.2.-,4.2.99.18 K03660 GO:0006284,GO:0003684,GO:0006289,GO:0008534 AT1G21710.1 ATOGG1,OGG1 8-oxoguanine-DNA glycosylase 1 Cre13.g605800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g14610.t1 PF07529 - - - - - AT3G24880.1 - Helicase/SANT-associated, DNA binding protein Cre12.g495000 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g12121.t1 - - - - - - - - - Cre06.g308000 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 14 - - g7131.t1,Cre06.g308000.t1.1 PF00400 PTHR12291,PTHR12291:SF15 KOG1003 - - - - - - Cre13.g607800 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 15 - - g14652.t1 - - KOG3454 - - - - - - Cre03.g200450 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g4318.t1,Cre03.g200450.t1.1, g4318.t2 - - - - - - - - - Cre03.g182750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g3788.t1,Cre03.g182750.t1.1 PF04916 PTHR12370 KOG3774 - - - - - - Cre11.g483000 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g11991.t1 PF00069 PTHR23257,PTHR23257:SF301 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre01.g042550 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g953.t1 PF07774 PTHR21573 KOG2103 - - - AT5G11560.1 - catalytics Cre07.g344600 PGD1 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - - D-3-phosphoglycerate dehydrogenase D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); Target-P predicts organelle (mitochondrial) targeting; predict plastid targeting by homology g8018.t1,Cre07.g344600.t1.1,PGD1 PF01842,PF02826,PF00389 PTHR10996,PTHR10996:SF20 KOG0068 1.1.1.95 K00058 GO:0008152,GO:0016597,GO:0016616,GO:0048037,GO:0051287,GO:0004617,GO:0006564,GO:0055114 AT4G34200.1 EDA9 D-3-phosphoglycerate dehydrogenase Cre01.g047700 CYN40 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID: 15047905]. TPR domain involved in HSP90 interaction; cytosolic; similar to At2g15790 (AtCYP40, CYP40) and AT2G38730 (AtCYP22) g1060.t1,Cre01.g047700.t1.1 PF00160 PTHR11071,PTHR11071:SF98 KOG0546 5.2.1.8 K05864 GO:0003755,GO:0006457 AT2G15790.1 CYP40,SQN peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase Cre10.g417850 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g10348.t1 PF04564 PTHR22849 - - - GO:0000151,GO:0004842,GO:0016567 AT4G36550.1 - ARM repeat superfamily protein Cre14.g631050 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 16 - - g15207.t1 - - - - - - - - - Cre08.g368100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g8625.t1 - - - - - - - - - Cre17.g715421 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 10 - - g17319.t1,Cre17.g715421.t1.1 - PTHR10552 - - - - - - - Cre12.g494600 - 0 1 1.0 nan 0 1 1.0 nan SP n - 4 - - g12056.t1,Cre12.g494600.t1.1 - - - - - - - - - Cre12.g560600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g13307.t1 PF01513 PTHR20275 - 2.7.1.23 K00858 GO:0003951,GO:0008152 AT3G21070.1 ATNADK-1,NADK1 NAD kinase 1 Cre01.g040950 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g917.t1,Cre01.g040950.t1.1 PF02816 PTHR14187,PTHR14187:SF3 - - - GO:0004674,GO:0005524,GO:0006468 - - - Cre07.g342600 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g7933.t1 - - - - - - - - - Cre13.g571650 RPB10 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 DNA-directed RNA polymerases I/II/III subunit Putative DNA-directed RNA polymerases I/II/III subunit 10 (DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide) (ABC10-beta) (ABC8); RPB10 g14058.t1,Cre13.g571650.t1.1,RPB10 PF01194 PTHR23413:SF2,PTHR23413 KOG3497 - K03007 GO:0003677,GO:0003899,GO:0006351 AT1G61700.1 - RNA polymerases N / 8 kDa subunit Cre02.g108900 CAM6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g2232.t1,Cre02.g108900.t1.1,CAM6 - PTHR10891 - - - - - - - Cre03.g163000 POC5 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Centriole proteome protein Found in basal body proteome [PMID: 15964273]. Human homolog FLJ35779 gene product found in centrosome proteome [Andersen]. g3341.t1,Cre03.g163000.t1.1,POC5 - - - - - - - - - Cre14.g609202 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 - - g14687.t1 PF01471,PF00413,PF00264 PTHR10201:SF75,PTHR10201 - - - GO:0004222,GO:0006508,GO:0008270,GO:0031012,GO:0008152,GO:0016491 AT4G16640.1 - Matrixin family protein Cre01.g003516 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g85.t1 - - - - - - - - - Cre12.g505200 HEL51 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g12463.t1,Cre12.g505200.t1.1,HEL51 PF00271,PF00270 PTHR24031:SF11,PTHR24031 KOG0330 3.6.1.- K01529 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT5G60990.1 - DEA(D/H)-box RNA helicase family protein Cre08.g370083 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g8673.t1 - - - - - - - - - Cre06.g303800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g7035.t1,Cre06.g303800.t1.1 PF00612 - - - - GO:0005515 - - - Cre16.g653000 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g15791.t1 PF08585 PTHR13681:SF2,PTHR13681 KOG4462 - - - AT5G19950.1 - Domain of unknown function (DUF1767) Cre06.g272950 RPS18 - 0 1 1.0 nan 0 1 1.0 nan O n - - Ribosomal protein S18, component of cytosolic 80S ribosome and 40S small subunit Cytosolic 80S ribosomal protein S18; Cytosolic 40S small ribosomal subunit protein S18 g6124.t1 PF00416 PTHR10871:SF2,PTHR10871 KOG3311 - K02964 GO:0003723,GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT1G22780.1 PFL,PFL1,RPS18A Ribosomal protein S13/S18 family Cre01.g007200 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g188.t1,Cre01.g007200.t1.1 PF01529 PTHR22883 KOG1311 - - GO:0008270 AT3G56930.1 - DHHC-type zinc finger family protein Cre16.g680250 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 - - g16503.t1,Cre16.g680250.t1.1 - - - - - - - - - Cre09.g391541 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9698.t1,Cre02.g127000.t1.1 PF03031 PTHR12210,PTHR12210:SF20 KOG1605 - - GO:0005515 AT5G11860.1 SSP5 SCP1-like small phosphatase 5 Cre03.g145127 ODA11,DHC13 - 0 22 1.0 1.0 0 22 1.0 1.0 O n - 16 Flagellar outer arm dynein heavy chain alpha Flagellar outer arm dynein heavy chain alpha. An ATPase/microtubule motor containing Kelch and immunoglobulin domains at N-terminus and is phosphorylated at multiple sites. Previously annotated as ODA11 g2920.t1,Cre01.g058400.t1.1,Cre01.g058400.t1.2,ODA11 PF01833,PF00630,PF07646,PF08393,PF07728,PF03028 PTHR10676,PTHR10676:SF37 KOG3595 - - GO:0005515,GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 AT1G18610.1 - Galactose oxidase/kelch repeat superfamily protein Cre12.g500350 PPP38 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g12569.t1,Cre12.g500350.t1.1,PPP38 PF00149 PTHR11668,PTHR11668:SF7 KOG0374 - - GO:0016787 AT5G63870.1 ATPP7,PP7 serine/threonine phosphatase 7 Cre03.g184100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g3815.t1 PF08797 - - - - GO:0003676,GO:0008270,GO:0016818 - - - Cre03.g204500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 - - g4225.t1 - - - - - - - - - Cre17.g739800 OPR106 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g17894.t1 PF08373 - - - - - - - - Cre12.g515750 NTP5 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g12724.t1,NTP5 PF07690 PTHR11662:SF23,PTHR11662 KOG2532 - - GO:0016021,GO:0055085 AT4G00370.1 ANTR2,PHT4;4 Major facilitator superfamily protein Cre09.g399300 FKB17-1,FKB14 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 6 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase); probably directed to thylakoid lumen (bipartite cTP) but not orthologous to AtFKBP17-1 g9289.t1,Cre09.g399300.t1.1,FKB14 PF00254 PTHR10516,PTHR10516:SF118 KOG0549 - - GO:0006457 AT5G05420.1 - FKBP-like peptidyl-prolyl cis-trans isomerase family protein Cre10.g463800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11365.t2, g11365.t1,Cre10.g463800.t1.1 - - - - - - AT5G62140.1 - - Cre06.g258733 LEU2 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g5818.t2,Cre06.g258750.t1.2,LEU2, g5818.t1,Cre06.g258750.t2.1,LEU2 PF00682,PF08502 PTHR10277:SF9,PTHR10277 - 2.3.3.13 K01649 GO:0003824,GO:0003852,GO:0009098 AT1G18500.1 IPMS1,MAML-4 methylthioalkylmalate synthase-like 4 Cre12.g514800 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - - - g12703.t1 PF02545 PTHR11746 KOG1509 - - GO:0005737 AT5G42770.2 - Maf-like protein Cre16.g687150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g16347.t1 - - - - - - - - - Cre07.g340600 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g7921.t1 PF00153 PTHR24089:SF145,PTHR24089 KOG0758 - - - AT4G11440.1 - Mitochondrial substrate carrier family protein Cre06.g279900 VFL3 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Protein required for templated centriole assembly VFL3, variable flagella number; mutation in this gene causes loss of the templated centriole assembly pathway without eliminating de novo assembly [PMID: 11267867]; MOT14, gene identified by comparative genomics as being present only in organisms having m g6507.t1,VFL3 - PTHR22691:SF1,PTHR22691 - - - - - - - Cre17.g736584 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 - - g17817.t1 - - - - - - - - - Cre16.g686285 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 4 - - g16160.t1,Cre01.g064850.t1.1 - - - - - - - - - Cre16.g658800 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g15916.t1 - - - - - - - - - Cre12.g486350 STK3,STPK3 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK3 g12267.t1,STK3,STPK3 PF00069 PTHR24347,PTHR24347:SF40 KOG0616 - - GO:0004672,GO:0005524,GO:0006468 AT5G60550.1 ATSNAK1,GRIK2 geminivirus rep interacting kinase 2 Cre17.g725200 - 0 16 1.0 1.0 0 16 1.0 1.0 O n upregulated 17 - - g17537.t1,Cre17.g725200.t1.1 PF00664,PF00005 PTHR24221,PTHR24221:SF96 KOG0058 - - GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT3G62150.1 PGP21 P-glycoprotein 21 Cre14.g630823 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g15195.t1 - - - - - - - - - Cre14.g627422 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g15109.t1 - - - - - - - - - Cre16.g678700 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g16539.t1,Cre16.g678700.t1.1 - - - - - - - - - Cre10.g424550 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 15 - - g10496.t1 - - - - - - - - - Cre09.g387450 OPR37 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 7 - - g9556.t1 PF06743 - - - - GO:0004672,GO:0005524,GO:0006915 - - - Cre07.g314000 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g7266.t1 - - - - - - - - - Cre15.g639150 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g15426.t2, g15426.t1 PF07766 PTHR14009 KOG1043 - - - AT1G65540.1 - LETM1-like protein Cre04.g222150 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g4848.t1,Cre04.g222150.t1.1 - - - - - - - - - Cre06.g310450 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 18 - - g7183.t1,Cre06.g310450.t1.1 PF08271,PF00382 PTHR11618:SF13,PTHR11618 KOG1597 - K03124 GO:0006355,GO:0008270,GO:0003743,GO:0006413,GO:0006352,GO:0030528 AT3G10330.1 - Cyclin-like family protein Cre03.g192850 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g3990.t1,Cre03.g192850.t1.1 PF05127,PF08351 PTHR10925 KOG2036 2.3.1.- K14521 - AT1G10490.1 - Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) Cre08.g360564 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 7 - - g8444.t1,Cre08.g360564.t1.1 PF02714 PTHR13018:SF5,PTHR13018 KOG1134 - - GO:0016020 AT4G02900.1 - ERD (early-responsive to dehydration stress) family protein Cre16.g693600 ISG-C4,ISG4,FAP137 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 15 Hydroxyproline-rich cell wall protein Putative extracellular matrix protein (cell wall protein); similar to Volvox ISG [PMID: 1600938]) and Chlamydomonas VSP-3 [PMID: 8000007], two glycoproteins with a hydroxyproline-rich (HR) domain; ISG Genbank entry X65165; VSP-3 Genbank entry AY795084. Al g15606.t1,Cre16.g693600.t1.1,ISG-C4,ISG4, g15606.t2,ISG-C4,ISG4 - - - - - - - - - Cre09.g393025 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9742.t1 - PTHR13078,PTHR13078:SF14 - - - - - - - Cre09.g386850 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n downregulated 11 - - g9568.t2, g9568.t1 - - - - - - - - - Cre07.g315950 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7308.t1 - - - - - - - - - Cre03.g202900 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 17 - - g4261.t1 - - - - - - - - - Cre13.g570350 AKC4 - 0 4 1.0 1.0 0 4 1.0 1.0 C Y upregulated 4 ABC1-like kinase Conserved expressed ABC-1 like kinase g14030.t1, g14030.t2 PF03109 PTHR10566,PTHR10566:SF10, PTHR10566:SF10,PTHR10566 KOG1235 - - - AT5G64940.1 ATATH13,ATH13,ATOSA1,OSA1 ABC2 homolog 13 Cre04.g218350 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g4759.t2, g4759.t1,Cre04.g218350.t1.1 - - - - - - - - - Cre02.g085279 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g1576.t1 - - - - - - - - - Cre07.g341553 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7960.t1 PF00078 PTHR13078,PTHR13078:SF14 - - - GO:0003723,GO:0003964,GO:0006278 - - - Cre07.g341552 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g7959.t1 - - - - - - - - - Cre06.g283300 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g6588.t1,Cre06.g283300.t1.1 PF00023 PTHR24188 KOG0512 6.3.2.19 K10683 GO:0005515 AT3G09890.1 - Ankyrin repeat family protein Cre07.g325101 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 10 - - g7510.t1,Cre07.g325100.t1.2 PF02698 - - - - - - - - Cre06.g299050 DGTT3 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6918.t1,Cre06.g299050.t1.1 PF03982 PTHR12317 KOG0831 - - GO:0016747 AT3G51520.1 - diacylglycerol acyltransferase family Cre07.g341554 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g7961.t1 - PTHR13078,PTHR13078:SF14 - - - - - - - Cre16.g655400 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g15843.t1 PF00400 PTHR22874,PTHR22874:SF1 - - - - AT5G43930.1 - Transducin family protein / WD-40 repeat family protein Cre16.g691600 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g15649.t1 - - - - - - - - - Cre04.g217750 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g4532.t1 PF00400 PTHR16017 KOG0772 - - - AT2G20330.1 - Transducin/WD40 repeat-like superfamily protein Cre17.g730600 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g17656.t1 PF00759 PTHR22298:SF3,PTHR22298 KOG3454 - - GO:0004553,GO:0005975 AT4G11050.1 AtGH9C3,GH9C3 glycosyl hydrolase 9C3 Cre17.g713800 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 8 - - g17285.t1,Cre17.g713800.t1.1 PF04755 - - - - GO:0005198,GO:0009507 AT4G22240.1 - Plastid-lipid associated protein PAP / fibrillin family protein Cre03.g206950 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 11 - - g4171.t1 PF05183 - - - - GO:0003968 AT2G19910.1 - RNA-dependent RNA polymerase family protein Cre03.g197850 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 7 - - g4098.t2, g4098.t1 PF11267 - - - - - AT3G19900.1 - - Cre06.g296550 FMO3 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 Flavin-containing monooxygenase Uses NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification; more closely related to bacterial than to plant homologues; linked to FMO6 and g6858.t1,Cre06.g296550.t1.1,FMO3 PF00743 PTHR23023,PTHR23023:SF21 KOG1399 - - GO:0004499,GO:0050660,GO:0050661,GO:0055114 AT1G19250.1 FMO1 flavin-dependent monooxygenase 1 Cre07.g344900 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 11 - - g8025.t2, g8025.t1,Cre07.g344900.t1.1 - - - - - - - - - Cre05.g238100 PTK25 - 0 9 1.0 1.0 0 9 1.0 1.0 O n downregulated 16 Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g5480.t1,Cre05.g238100.t1.1,PTK25 PF00069,PF07714 PTHR23257,PTHR23257:SF304 KOG1187 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre13.g584350 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 - - g14344.t1 - - - - - - - - - Cre10.g421700 GPD4 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 11 Glycerol-3-phosphate dehydrogenase/dihydroxyacetone-3-phosphate reductase - g10435.t1,Cre10.g421700.t1.1 PF07479,PF00702,PF01210 PTHR11728 KOG2711 1.1.1.8 K00006 GO:0005975,GO:0016614,GO:0055114,GO:0003824,GO:0008152,GO:0004367,GO:0006072,GO:0009331,GO:0005737,GO:0016616,GO:0046168,GO:0051287 AT5G40610.1 - NAD-dependent glycerol-3-phosphate dehydrogenase family protein Cre16.g666100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g16075.t1,Cre16.g666100.t1.1 PF01171 PTHR11807:SF3,PTHR11807 KOG2840 2.7.7.- K14168 - AT2G44270.1 ROL5 repressor of lrx1 Cre16.g665450 FAP48,RYR1 - 0 15 1.0 1.0 0 15 1.0 1.0 O n - 14 Ryanodine-inositol 1,4,5-triphosphate receptor Ca2+ channel Ryanodine receptor calcium ion channel RIR-CaC; Inositol 1,4,5-trisphosphate receptor type 1 (Type 1 InsP3 receptor) (IP3 receptor) (InsP3R1) (IP3R); found in flagellar proteome as FAP48 (PMID: 15998802) g16061.t1,RYR1 PF01365,PF08454,PF08709 PTHR13715,PTHR13715:SF58 - - K04963 GO:0005262,GO:0016020,GO:0070588 - - - Cre13.g579650 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 4 - - g14241.t1 PF00069 PTHR23257:SF345,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre13.g571400 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g14050.t2, g14050.t1 - - - - - - - - - Cre02.g098850 NTR2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 9 NADPH dependent thioredoxin reductase NADPH-dependent thioredoxin reductase 2, similar to AtNTRA and AtNTRB targeted to cytosol and mitochondria in Arabidopsis due to alternative initiation of transcription. Apparently no alternative initiation of trancription for this NTR in chlamy but prese g2010.t1 PF07992,PF00070 PTHR11493,PTHR11493:SF38 KOG0404 - - GO:0016491,GO:0050660,GO:0055114 AT2G17420.1 ATNTRA,NTR2,NTRA NADPH-dependent thioredoxin reductase A Cre12.g546550 FEA1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 Fe-assimilating protein High-CO2 inducible, iron-deficiency inducible, periplasmic protein. Changes in expression with light intensity were studied by Long and Merchant 2008 [PMID: 19067961]. Cis-acting regulatory elements were characterized by Fei et al. 2009 [PMID: 19351705]. g13624.t1 PF07692 - - - - - - - - Cre16.g683450 AGP2 - 0 7 1.0 1.0 0 7 1.0 1.0 M n downregulated 10 - - g16433.t1,Cre16.g683450.t1.1,AGP2 PF00483 PTHR22572,PTHR22572:SF10 KOG1322 - - GO:0009058,GO:0016779 AT5G19220.1 ADG2,APL1 ADP glucose pyrophosphorylase large subunit 1 Cre06.g284650 MKP6 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 Dual-specificity protein phosphatase Dual-specificity protein phosphatase, cyclin-dependent kinase 2 (CDK2)-associate. Homologous to cyclin-dependent kinase inhibitor 3 (CDKN3) Previously annotated as MKP6 g6618.t1,Cre06.g284650.t1.1,MKP6 PF05706 PTHR23339,PTHR23339:SF30 - - - GO:0004721,GO:0004725 - - - Cre08.g380400 MAD2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 Mitotic spindle assembly checkpoint protein Similar to MAD2 mitotic spindle assembly checkpoint protein g8953.t1,Cre08.g380400.t1.1,MAD2 PF02301 PTHR11842:SF11,PTHR11842 KOG3285 - K02537 GO:0007067 AT3G25980.1 MAD2 DNA-binding HORMA family protein Cre01.g025300 RAD51B - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 11 - - g581.t1,RAD51B PF08423 PTHR22942,PTHR22942:SF15 KOG1564 - K10869 - AT2G28560.1 ATRAD51B,RAD51B DNA repair (Rad51) family protein Cre01.g009300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 1 - - g234.t1 PF02383,PF00397 PTHR11200:SF41,PTHR11200 - - - GO:0042578,GO:0005515 AT3G59770.3 SAC9 sacI homology domain-containing protein / WW domain-containing protein Cre12.g498200 FAP128 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g12621.t1,Cre12.g498200.t1.1 - - - - - - - - - Cre12.g485600 - 0 4 1.0 1.0 0 4 1.0 1.0 C n downregulated - - - g12052.t1,Cre12.g485600.t1.1 PF00069 PTHR24343,PTHR24343:SF122 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT4G33950.1 ATOST1,OST1,P44,SNRK2-6,SNRK2.6,SRK2E Protein kinase superfamily protein Cre14.g628500 CPLD66 - 0 1 1.0 nan 0 1 1.0 nan C Y - 6 - - g15138.t1 PF01370 PTHR10366,PTHR10366:SF118 - - - GO:0003824,GO:0044237,GO:0050662 AT1G19690.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre12.g518000 SECA2,SCA2 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 Chloroplast-associated SecA protein SecA protein associated with import of proteins into chloroplast. Strong homology to SecA. Previously annotated as SECA2 g12775.t1,SCA2, g12775.t2,SCA2 PF07517,PF01043 - - - - GO:0005524,GO:0016020,GO:0017038 AT4G01800.1 AGY1,AtcpSecA Albino or Glassy Yellow 1 Cre13.g574150 FAO10 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 12 - - g14114.t1,FAO10 PF01266 PTHR13847:SF22,PTHR13847 KOG2665 - - GO:0016491 AT3G56840.1 - FAD-dependent oxidoreductase family protein Cre07.g317626 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7344.t1 - - - - - - - - - Cre17.g746497 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g18046.t1 - - - - - - - - - Cre03.g196100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g4062.t1,Cre03.g196100.t1.1 - - - - - - - - - Cre01.g054800 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g1209.t1,Cre01.g054800.t1.1 - - - - - - AT3G62010.1 - - Cre14.g620500 - 0 11 1.0 1.0 0 11 1.0 1.0 M n - 17 - - g14954.t1,Cre14.g620500.t1.1 PF00847 - - - - GO:0003700,GO:0006355 AT1G12980.1 DRN,ESR1 Integrase-type DNA-binding superfamily protein Cre06.g270300 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g6065.t1 - PTHR13271 - - - - - - - Cre12.g530450 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g13057.t1 - - - - - - - - - Cre12.g552650 PAP8 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 Non-canonical poly(A) polymerase Non-canonical poly(A) polymerase (PAP) g13485.t1,Cre12.g552650.t1.1,PAP8 - PTHR23092,PTHR23092:SF15 KOG1906 - - - AT3G61690.1 - nucleotidyltransferases Cre16.g674938 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g16620.t1, g16620.t2,Cre16.g674938.t1.1, g16620.t3 - - - - - - - - - Cre14.g623850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g15034.t1, g15034.t2 - - - - - - - - - Cre03.g203500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g4247.t1,Cre03.g203500.t1.1 PF00069,PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G11850.1 - Protein kinase superfamily protein Cre07.g336050 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g7822.t1,Cre07.g336050.t1.1 - - - - - - AT3G51050.1 - FG-GAP repeat-containing protein Cre12.g522400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 11 - - g12865.t1 PF00249 PTHR10641,PTHR10641:SF77 - - K09422 - AT5G11510.1 AtMYB3R4,MYB3R-4 myb domain protein 3r-4 Cre17.g732050 AGE3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g17692.t2,Cre17.g732050.t1.1,AGE3, g17692.t1,AGE3 PF00730 PTHR10359 - 4.2.99.18 K10773 GO:0006284 AT1G05900.2 ATNTH2,NTH2 endonuclease III 2 Cre10.g459800 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g11275.t1,Cre10.g459800.t1.1 PF00566 PTHR22957,PTHR22957:SF159 KOG2221 - - GO:0005097,GO:0005622,GO:0032313 AT3G07890.1 - Ypt/Rab-GAP domain of gyp1p superfamily protein Cre16.g661350 RMT1,RBCMT1 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 4 Rubisco large subunit N-methyltransferase Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative [EC:2.1.1.127] g15970.t1,Cre16.g661350.t1.1,RMT1 PF09273 PTHR13271 KOG1337 2.1.1.127 K00592 - AT1G14030.1 - Rubisco methyltransferase family protein Cre14.g617750 PDE3 - 0 15 1.0 1.0 0 15 1.0 1.0 M n - 16 3\',5\'-cyclic-nucleotide phosphodiesterase Phosphodiesterase similar to PDE1b from Mus musculus AAB58531.1. g14883.t1,PDE3 PF00233,PF03924 PTHR11347:SF75,PTHR11347 - 3.1.4.17 K13755 GO:0004114,GO:0007165 - - - Cre12.g535250 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g13166.t1 - - - - - - - - - Cre09.g394325 ELI3 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y upregulated 2 Early light-inducible protein A homolog of ELIP (early light-inducible protein) gene which was originally identified as transiently expressed during the early phase of greening in etiolated pea seedlings [PMID: 6692824]. It has three TMH, whose sequences are closely related to LHC pro g9779.t1,Cre02.g130500.t1.1,Cre02.g130500.t1.2,ELI3 PF00504 PTHR14154:SF1,PTHR14154 - - - - AT4G14690.1 ELIP2 Chlorophyll A-B binding family protein Cre14.g629102 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g15151.t1 PF00326 PTHR11731:SF5,PTHR11731 - - - GO:0006508,GO:0008236 AT2G47390.1 - Prolyl oligopeptidase family protein Cre02.g091200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 16 - - g1706.t1 PF04209 PTHR11056 KOG1417 - - GO:0004411,GO:0006559,GO:0006570,GO:0055114 AT5G54080.1 HGO homogentisate 1,2-dioxygenase Cre09.g410300 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 9 - - g10165.t1 PF08766,PF01593 PTHR10742:SF48,PTHR10742 KOG3454 - - - - - - Cre09.g393802 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 15 - - g9764.t1,Cre02.g129850.t1.1,Cre02.g129850.t1.2 - - - - - - - - - Cre09.g398850 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g9299.t1,Cre09.g398850.t1.1 - - - - - - AT3G55005.1 TON1B tonneau 1b (TON1b) Cre16.g688190 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 - - g16846.t1,Cre01.g071300.t1.1,Cre01.g071300.t1.2 - PTHR10527 - - - - AT5G19820.1 emb2734 ARM repeat superfamily protein Cre13.g575400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 3 - - g14142.t1 - - - - - - - - - Cre06.g297300 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6878.t1 - - - - - - - - - Cre06.g291700 RSP3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 Radial spoke protein 3 Flagellar radial spoke protein 3 (RSP3) [PMID: 16507594]; an axonemal A-kinase anchoring protein KAP [PMID: 11309423; PMID: 16571668; PMID: 16267272; GI:134041]. Gene originally termed PF14 [PMID: 7204490; PMID: 2745550; PMID: 2377611]. PMID: 18157907 g6759.t1,Cre06.g291700.t1.1 PF06098 PTHR21648 - - - - - - - Cre12.g542700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 15 - - g13715.t1,Cre12.g542700.t1.1 - - KOG4593 - - - - - - Cre03.g208273 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g4441.t1 - - - - - - - - - Cre06.g281950 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g6558.t1 PF07707 - - - - - - - - Cre07.g335500 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - - - g7811.t1 - - - - - - - - - Cre01.g050000 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g1106.t1,Cre01.g050000.t1.1 PF10914 - - - - - AT2G32380.1 - Transmembrane protein 97, predicted Cre14.g621751 UAP2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g14983.t1,Cre14.g621750.t1.2,UAP2 PF01704 PTHR11952,PTHR11952:SF2 KOG2388 2.7.7.64 K12447 GO:0008152,GO:0016779 AT5G52560.1 ATUSP,USP UDP-sugar pyrophosphorylase Cre17.g712700 TNP45 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g17257.t1,TNP45 - - - - - - - - - Cre03.g190500 GLH1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 Glycoside-hydrolase-like protein Belongs to a family of glycoside hydrolases (family 31), which hydrolyse the O-glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety g3944.t1,Cre03.g190500.t1.1,GLH1 PF01055 PTHR22762:SF7,PTHR22762 KOG1066 3.2.1.84 K05546 GO:0004553,GO:0005975 AT5G63840.1 PSL5,RSW3 Glycosyl hydrolases family 31 protein Cre10.g434400 PF6 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 Flagellar central pair-associated protein Protein associated with one of the central pair of microtubules of the flagellar axoneme g10714.t1,Cre10.g434400.t1.1,PF6 - - - - - - - - - Cre12.g559300 ARM1 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 16 Predicted protein Protein of unknown function, containing armadillo repeat; identified by comparative genomics as being present only in organisms having motile (MOT) cilia g13338.t1,Cre12.g559300.t1.1,ARM1 - PTHR21356 KOG1048 - - - - - - Cre14.g615450 - 0 1 1.0 nan 0 1 1.0 nan M n - 5 - - g14827.t1,Cre14.g615450.t1.1 - - - - - - - - - Cre14.g626900 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g15097.t1,Cre14.g626900.t1.1 PF03332 PTHR10466 KOG3189 5.4.2.8 K01840 GO:0004615,GO:0005737,GO:0019307 AT2G45790.1 ATPMM,PMM phosphomannomutase Cre02.g090550 ARS9 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 9 - - g1692.t1,ARS9 PF00884 PTHR10342:SF2,PTHR10342 KOG3867 - - GO:0008152,GO:0008484 - - - Cre16.g660550 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g15954.t1,Cre16.g660550.t1.1 PF03372,PF00078 PTHR13078,PTHR13078:SF14 KOG1995 - - GO:0003723,GO:0003964,GO:0006278 - - - Cre17.g712742 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g17258.t1,Cre17.g712742.t1.1 - - - - - - - - - Cre15.g639304 OPR90 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g15423.t1,Cre15.g639304.t1.1 PF08373 - - - - - - - - Cre16.g680117 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g16774.t1,Cre01.g068100.t1.1,Cre01.g068100.t1.2 PF00097,PF02225 PTHR22765:SF20,PTHR22765 KOG4628 - - - AT5G66160.1 ATRMR1,RMR1 receptor homology region transmembrane domain ring H2 motif protein 1 Cre14.g616900 SLP2,SULP2 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - Chloroplast sulfate permease Transmembrane component of chloroplast sulfate-transporting ABC transporter [GI:42559329]. Discussed by Lindberg and Melis 2008 [PMID: 18682979]. Previously annotated as SULP2 g14862.t1,Cre14.g616900.t1.1,SLP2 PF00528 - - - - GO:0005215,GO:0006810,GO:0016020 - - - Cre12.g531550 EIF5Bd,EIF2B,EIF5B3 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 Eukaryotic translation initiation factor 2, beta subunit Eukaryotic translation initiation factor 2, beta subunit (eIF2 beta). Questionable GTPase functionality, however. Previously annotated as EIF5Bd. Most similar to A. thaliani EIF2B in SwissProt g13081.t1,Cre12.g531550.t1.1,EIF2B,EIF5B3,EIF5Bd PF01873 PTHR23001:SF3,PTHR23001 KOG2768 - K03238 GO:0003743,GO:0006413 AT5G20920.1 EIF2 BETA,EMB1401 eukaryotic translation initiation factor 2 beta subunit Cre05.g233100 KIN14B-1,KIN14-6 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g5111.t1,Cre05.g233100.t1.1,KIN14-6,KIN14B-1, g5111.t2,KIN14-6,KIN14B-1 PF00225,PF00307 PTHR24115:SF135,PTHR24115 KOG0239 - - GO:0003777,GO:0005524,GO:0007018,GO:0005515 AT3G44730.1 ATKP1,KP1 kinesin-like protein 1 Cre13.g588850 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 - - g14446.t1,Cre13.g588850.t1.1 PF10250 - - - - - - - - Cre09.g397000 - 0 17 1.0 1.0 0 17 1.0 1.0 M n - 16 - - g9345.t1 - PTHR10919:SF226,PTHR10919 - - - - - - - Cre09.g397002 - 0 1 1.0 nan 0 1 1.0 nan - n - 15 - - g9346.t1 - - - - - - - - - Cre03.g177650 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 - - g3673.t1,Cre03.g177650.t1.1 - - KOG1003 - - - - - - Cre13.g583750 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 14 - - g14331.t1 PF00097 - - - - - AT3G18930.1 - RING/U-box superfamily protein Cre07.g353000 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 16 - - g8210.t1,Cre07.g353000.t1.1 PF00069 PTHR24055,PTHR24055:SF169 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT3G48750.1 CDC2,CDC2A,CDC2AAT,CDK2,CDKA1,CDKA;1 cell division control 2 Cre03.g156400 SMM8 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g3192.t1,Cre03.g156400.t1.1,SMM8 PF08241 PTHR10108,PTHR10108:SF433 KOG3010 - - GO:0008152,GO:0008168 AT2G41380.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre16.g650300 HTR39 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 Histone H3 Replication-linked Histone H3 g15733.t1,Cre16.g650300.t1.1,HTR39 PF00125 PTHR11426 KOG1745 - K11253 GO:0003677,GO:0000786,GO:0006334 AT4G40030.2 - Histone superfamily protein Cre13.g575776 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g14151.t1 - - - - - - - - - Cre17.g720000 CCT9 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 16 - - g17426.t1,CCT9 PF00118 - - - - GO:0005524,GO:0044267 AT3G20050.1 ATTCP-1,TCP-1 T-complex protein 1 alpha subunit Cre17.g739550 CPLD12 - 0 3 1.0 1.0 0 3 1.0 1.0 C Y - 4 Protein of unknown function, conserved in plants and diatoms Conserved expressed protein of unknown function, most similar to protein of unknown function in Arabidopsis and rice g17888.t1 PF09353 - - - - - AT5G27560.1 - Domain of unknown function (DUF1995) Cre12.g515200 DRC6,FAP169 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g12711.t1,Cre12.g515200.t1.1,FAP169 - PTHR23125,PTHR23125:SF140 - - - - AT4G33210.1 SLOMO F-box family protein Cre09.g407250 FAP270 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 Flagellar Associated Protein Hypothetical Flagellar Associated Protein with ankyrin repeats, found in the flagellar proteome [PMID: 15998802] g10097.t2, g10097.t1,Cre09.g407250.t1.1 PF00023 - - - - GO:0005515 AT2G03430.1 - Ankyrin repeat family protein Cre08.g367250 FAP176 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 7 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g8605.t1 - - - - - - - - - Cre07.g339554 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 - - g7898.t1,Cre07.g339554.t1.1 - PTHR12778,PTHR12778:SF3 KOG3574 - - - - - - Cre07.g339550 FBB13 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 Flagellar/basal body protein Conserved protein in ciliated organisms, with unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation g7897.t1,FBB13 - - - - - - AT1G31175.1 - - Cre12.g538450 EPT1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 CDP-Ethanolamine:DAG Ethanolamine phosphotransferase CDP-Etn:DAG Ethanolamine phosphotransferase in Kennedy pathway for PtdEtn biosynthesis g13239.t1,Cre12.g538450.t1.1,EPT1 PF01066 PTHR10414,PTHR10414:SF4 KOG2877 2.7.8.1 K00993 GO:0008654,GO:0016020,GO:0016780 AT3G25585.1 AAPT2,ATAAPT2 aminoalcoholphosphotransferase Cre15.g641000 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15454.t1, g15454.t2,Cre15.g641000.t1.1 PF00638 PTHR23138,PTHR23138:SF52 KOG2724 - - GO:0046907 AT1G52380.1 - NUP50 (Nucleoporin 50 kDa) protein Cre03.g206250 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 17 - - g4186.t1 - - - - - - - - - Cre12.g530600 GLN3 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 Glutamine synthetase Glutamine synthetase (EC 6.3.1.2), plastid precursor (Glutamate-ammonia ligase); Arranged head-to-head with another glutamine synthetase gene, GLN2; GLN2 & GLN3 are very nearly identical at the predicted aa level, and also nearly identical in the coding s g13060.t1 PF03951,PF00120 PTHR20852:SF14,PTHR20852 KOG0683 - - GO:0004356,GO:0006542,GO:0006807 AT5G16570.1 GLN1;4 glutamine synthetase 1;4 Cre03.g165350 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g3392.t1 - - - - - - AT4G33380.1 - - Cre01.g000300 GDP8 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 17 - - g9.t1,GDP8 PF00561 PTHR10992,PTHR10992:SF283 KOG4409 - - - AT4G24160.1 - alpha/beta-Hydrolases superfamily protein Cre01.g043150 BLZ15 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 15 - - g965.t1,Cre01.g043150.t1.1,BLZ15 - - - - - - AT4G36730.2 GBF1 G-box binding factor 1 Cre03.g168550 AOT3 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - Amino acid transporter Amino acid/polyamine transporter; belongs to AAAP family of amino acid/auxin permeases; most similar to plant relatives and Ostreococcus AOT3; probably organelle-targeted g3468.t1,AOT3 PF01490 PTHR22950:SF9,PTHR22950 KOG1303 - - - AT2G41190.1 - Transmembrane amino acid transporter family protein Cre02.g077700 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 9 - - g1401.t1 PF00566 PTHR22957:SF51,PTHR22957 KOG2058 - - GO:0005097,GO:0005622,GO:0032313 AT3G55020.1 - Ypt/Rab-GAP domain of gyp1p superfamily protein Cre12.g539850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g13778.t2, g13778.t1 - - - - - - - - - Cre09.g409951 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g10157.t1,Cre09.g409950.t1.3 PF03652 - - - - GO:0005737,GO:0006281,GO:0006310,GO:0006974,GO:0016788 AT1G12244.1 - Polynucleotidyl transferase, ribonuclease H-like superfamily protein Cre09.g388986 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 2 - - g9629.t1,Cre02.g123900.t1.1 PF01585,PF12457 PTHR23149 - - - GO:0003676,GO:0005622 AT3G09850.1 - D111/G-patch domain-containing protein Cre10.g427550 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g10561.t1 PF11051 - - - - GO:0006486 - - - Cre03.g174672 - 0 11 1.0 1.0 0 11 1.0 1.0 M n - 13 - - g3607.t1,Cre03.g174672.t1.1 PF00561 - - - - - - - - Cre17.g698365 FAP172 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 13 - - g16937.t1 - PTHR16275 - - - - - - - Cre02.g100800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g2056.t1 PF00400 PTHR22847:SF140,PTHR22847 KOG0266 - - - AT5G25150.1 TAF5 TBP-associated factor 5 Cre08.g385300 HLM14 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 14 - - g9066.t1,Cre08.g385300.t1.1,HLM14 PF00856 PTHR12197:SF81,PTHR12197 - - - GO:0005515 AT1G26760.1 ATXR1,SDG35 SET domain protein 35 Cre06.g267800 MML1,MITC8 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 Mitochondrial substrate carrier protein Mitochondrial substrate carrier protein. Previously annotated as MITC8 g6009.t2,MITC8, g6009.t1,MITC8 PF00153 PTHR24089:SF43,PTHR24089 KOG0761 - - - AT4G27940.1 ATMTM1,MTM1 manganese tracking factor for mitochondrial SOD2 Cre03.g167850 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g3452.t1,Cre03.g167850.t1.1 PF00651 - - - - GO:0005515 - - - Cre13.g565200 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated - - - g13905.t1 PF00069 PTHR23257,PTHR23257:SF291 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre09.g399950 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g9270.t1,Cre09.g399950.t1.1 - - - - - - - - - Cre02.g143050 RPP2 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Acidic ribosomal protein P2 Cytosolic 80S ribosomal protein P2; Cytosolic 60S large ribosomal subunit protein P2 g2624.t1,Cre02.g143050.t1.1,RPP2 PF00428 PTHR21141 KOG3449 - K02943 GO:0003735,GO:0005622,GO:0005840,GO:0006414 AT2G27710.4 - 60S acidic ribosomal protein family Cre12.g554300 NSS6 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Sodium:solute symporter - g13447.t1,NSS6 - - KOG1792 - - - - - - Cre09.g395510 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - - - g9811.t1 - - KOG4743 - - - - - - Cre11.g482483 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 9 - - g11978.t2, g11978.t1 PF00271,PF08148,PF00270 PTHR11752:SF2,PTHR11752 KOG0947 - - GO:0003676,GO:0004386,GO:0005524,GO:0016818,GO:0008026 AT3G46960.1 - RNA helicase, ATP-dependent, SK12/DOB1 protein Cre04.g220000 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g4798.t2, g4798.t1 PF07714 PTHR23257 - - - GO:0004672,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre12.g488173 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g12222.t1,Cre12.g488173.t1.1 - - - - - - - - - Cre08.g377450 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 1 - - g8888.t1 PF03810 PTHR10997:SF9,PTHR10997 KOG2274 - - GO:0006886,GO:0008565 AT1G26170.1 - ARM repeat superfamily protein Cre10.g437350 MITC12 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - Mitochondrial substrate carrier protein Mitochondrial substrate carrier protein, contains EF-hand. Previously annotated as MITC12 g10777.t1,Cre10.g437350.t1.1,MITC12 PF00153 PTHR24089:SF34,PTHR24089 KOG0036 - - - AT4G32400.1 ATBT1,EMB104,EMB42,SHS1 Mitochondrial substrate carrier family protein Cre06.g269050 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g6037.t1,Cre06.g269050.t1.1 PF05368 PTHR10366,PTHR10366:SF122 KOG1203 - - - AT3G18890.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre14.g612100 RWP3 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 RWP-RK transcription factor Putative RWP-RK domain transcription factor; model is very tentative g14751.t1,RWP3 PF02042 - - - - - AT5G66990.1 - RWP-RK domain-containing protein Cre17.g715150 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g17312.t1,Cre17.g715150.t1.1 - - - - - - - - - Cre03.g205500 - 0 1 1.0 nan 0 1 1.0 nan O n - 3 - - g4202.t1 - - - - - - - - - Cre05.g248100 ANK1 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 8 Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g5170.t1,Cre05.g248100.t1.1,ANK1 PF00023 PTHR24198:SF302,PTHR24198 KOG4412 - - GO:0005515 AT5G02620.1 ANK1,ATANK1 ankyrin-like1 Cre07.g345750 NAT20 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g8045.t1,NAT20 PF00583 - - - - GO:0008080,GO:0008152 AT2G37520.1 - Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain Cre10.g461851 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g11321.t2, g11321.t3, g11321.t1 - - - - - - AT5G30510.1 ARRPS1,RPS1 ribosomal protein S1 Cre10.g461850 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 11 - - g11320.t1 - - - - - - - - - Cre10.g438950 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g10810.t1 - - KOG4593 - - - - - - Cre12.g492500 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g12100.t1 - - - - - - - - - Cre12.g492504 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g12112.t1 - - - - - - - - - Cre10.g425150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g10509.t1 - - - - - - - - - Cre04.g221750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g4839.t1 PF00651 - - - - GO:0005515 - - - Cre01.g020264 APG6 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g471.t1,Cre01.g020250.t1.2,APG6 PF04111 PTHR12768,PTHR12768:SF4 KOG2751 - K08334 GO:0006914 AT3G61710.1 ATATG6,AtBECLIN1,ATG6,BECLIN1 AUTOPHAGY 6 Cre24.g755647 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g18261.t1,Cre05.g231500.t1.1 - PTHR23102 - - - - AT1G30460.1 ATCPSF30,CPSF30 cleavage and polyadenylation specificity factor 30 Cre03.g181600 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g3764.t1 PF10561 - KOG2800 - - - AT2G44850.1 - - Cre11.g468356 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 8 - - g11752.t1, g11752.t2 PF07926 - KOG4674 - - GO:0005643,GO:0006606 - - - Cre11.g468350 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 2 - - g11750.t1,Cre11.g468350.t1.1 PF01494 PTHR13789:SF66,PTHR13789 KOG2614 - - GO:0004497,GO:0055114 - - - Cre03.g209841 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 4 - - g4456.t1,Cre19.g755800.t1.1 - - - - - - - - - Cre06.g249050 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g5578.t1 PF00249 PTHR10641 - - - - - - - Cre10.g431350 TGL16 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 2 - - g10649.t1,TGL16 - PTHR12406:SF24,PTHR12406 - - - - AT1G33270.2 - Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein Cre10.g463750 CYG27 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 Adenylate/guanylate cyclase Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g11364.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre03.g157725 PQQ1 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g3228.t1,Cre03.g157750.t1.3,PQQ1 - - - - - - - - - Cre12.g499301 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g12283.t1 - - - - - - - - - Cre01.g017450 POLA2 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 DNA polymerase alpha, subunit B Homologous to eukaryotic DNA polymerase alpha, subunit B. Involved in DNA replication; a class B polymerase. See Burgers et al. (2001) (PMID: 11579108). Previously annotated as POLA2 g413.t1 PF04042,PF08418 PTHR23061,PTHR23061:SF12 - - K02321 GO:0003677,GO:0003887,GO:0006260 AT1G67630.1 POLA2 DNA polymerase alpha 2 Cre17.g735400 VPS2B - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 Subunit of the ESCRT-III complex Expressed Protein. Similar to yeast Vps2p/Did4p, SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes) g17791.t1,Cre17.g735400.t1.1,VPS2B PF03357 PTHR10476,PTHR10476:SF4 KOG3230 - - GO:0015031 AT1G03950.1 VPS2.3 vacuolar protein sorting-associated protein 2.3 Cre18.g748947 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 - - g18095.t1,Cre46.g788750.t1.1,Cre46.g788750.t1.2 PF03151 PTHR11132 KOG1441 - - - AT1G21070.1 - Nucleotide-sugar transporter family protein Cre06.g304300 POA6 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 20S proteasome alpha subunit F 20S proteasome alpha subunit F (type 1) g7044.t1,Cre06.g304300.t1.1,POA6 PF00227 PTHR11599,PTHR11599:SF12 KOG0863 3.4.25.1 K02725 GO:0004298,GO:0005839,GO:0051603 AT1G47250.1 PAF2 20S proteasome alpha subunit F2 Cre17.g719450 - 0 1 1.0 nan 0 1 1.0 nan C n - 18 - - g17409.t1 PF00069 PTHR24349:SF106,PTHR24349 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT4G32830.1 AtAUR1,AUR1 ataurora1 Cre10.g444550 SPPA1,SPP1A,SPP1 - 0 5 1.0 1.0 0 5 1.0 1.0 M n upregulated 5 Signal peptide peptidase SppA, protease IV, signal peptide peptidase, serine endopeptidase of S49 family (ClpP clan); contains 2 functional S49 domains; probably associated with thylakoid membrane and involved in cleavage of membrane proteins or signal peptide; called SPPA1-1 in g10930.t1,Cre10.g444550.t1.1,SPP1,SPP1A PF01343 PTHR10381,PTHR10381:SF2 - 3.4.21.- K04773 GO:0006508,GO:0008233 AT1G73990.1 SPPA,SPPA1 signal peptide peptidase Cre17.g740300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 18 - - g17905.t1 - - - - - - - - - Cre06.g303350 FAL9 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 9 Similar to Flagellar Associated Protein FAP16 Expressed protein of unknown function with ribosomal protein S2 conserved site; overlaps with FAP16 gene model from v3 g7024.t1,Cre06.g303350.t1.1,FAL9 - - - - - - - - - Cre03.g195200 CGL76,HLD1 - 0 7 1.0 1.0 0 7 1.0 1.0 C Y upregulated 4 Haloalkane dehalogenase-like hydrolase Haloalkane dehalogenase, an alpha/beta hydrolast. Green-lineage conserved expressed protein with epoxide hydrolase / esterase motif. Previously annotated as CGL76 g4042.t1,Cre03.g195200.t1.1,HLD1 PF12146 PTHR10992,PTHR10992:SF259 KOG4178 - - - AT1G52510.1 - alpha/beta-Hydrolases superfamily protein Cre12.g537400 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - - - g13215.t1 PF00069 PTHR24349:SF112,PTHR24349 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre11.g481866 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g11964.t1,Cre11.g481850.t1.3 PF00023 PTHR24198:SF302,PTHR24198 KOG4412 - - GO:0005515 AT3G04710.3 - ankyrin repeat family protein Cre16.g684800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g16402.t1 PF00240,PF00560 PTHR23155:SF83,PTHR23155 KOG4579 - - GO:0005515 AT2G30105.1 - - Cre06.g300150 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g6944.t1 - - - - - - - - - Cre10.g424200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g10489.t1 PF04042 PTHR12708 KOG3818 2.7.7.7 K02325 GO:0003677,GO:0003887,GO:0006260 AT5G22110.1 ATDPB2,CYL2,DPB2 DNA polymerase epsilon subunit B2 Cre13.g575366 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g14141.t1 - - - - - - AT4G33690.1 - - Cre16.g691440 FAP43 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g16875.t1,Cre01.g072600.t1.1,Cre01.g072600.t1.2 PF00400 PTHR14885 - - - - - - - Cre02.g078050 CAM5 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 16 - - g1411.t1,Cre02.g078050.t1.1,CAM5 - PTHR23050:SF89,PTHR23050 - - - - - - - Cre10.g428433 FDG2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g10580.t2,Cre10.g428450.t1.3,FDG2, g10580.t1,Cre10.g428450.t2.1,FDG2 PF01149,PF06831 PTHR22993 - 3.2.2.23,4.2.99.18 K10563 GO:0003684,GO:0003906,GO:0006284,GO:0008270,GO:0016799,GO:0006289 AT1G52500.2 ATFPG-1,ATFPG-2,ATMMH-1,ATMMH-2,FPG-1,FPG-2,MMH-1,MMH-2 MUTM homolog-1 Cre04.g219350 PLC1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g4780.t1,PLC1 - - - - - - - - - Cre03.g158650 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g3248.t1,Cre03.g158650.t1.1 - - - - - - - - - Cre03.g153600 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g3129.t1,Cre03.g153600.t1.1 - - - - - - - - - Cre03.g201327 AKR1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 Aldo/keto reductase Aldo/keto reductase; family includes a number of related monomeric NADPH-dependent oxidoreductases g4378.t1,Cre19.g752450.t1.1,AKR1, g4378.t2,Cre19.g752450.t2.1,AKR1 PF00248 PTHR11732:SF74,PTHR11732 KOG1577 - - GO:0016491,GO:0055114 AT2G21260.1 - NAD(P)-linked oxidoreductase superfamily protein Cre16.g658350 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 11 - - g15906.t1 - - - - - - - - - Cre06.g288800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g6702.t1,Cre06.g288800.t1.1 - - - - - - AT5G45170.1 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre06.g283850 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 11 - - g6600.t1,Cre06.g283850.t1.1 - - - - - - - - - Cre03.g203250 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g4254.t1,Cre03.g203250.t1.1 - - - - - - - - - Cre13.g562000 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g13831.t1 - - - - - - - - - Cre07.g343750 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g7997.t1,Cre07.g343750.t1.1 PF01753 - - - - GO:0008270 - - - Cre11.g469750 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g11789.t1, g11789.t2 PF07173 - - - - - AT4G37900.1 - Protein of unknown function (duplicated DUF1399) Cre10.g433866 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 13 - - g10702.t1,Cre10.g433880.t2.1, g10702.t2,Cre10.g433880.t1.2 - - - - - - - - - Cre15.g636400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g15351.t1, g15351.t2 PF04511 PTHR11009 KOG0858 - K13989 - AT4G04860.1 DER2.2 DERLIN-2.2 Cre16.g682725 GST2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 Glutathione S-transferase Expression is induced by various oxidative stress conditions [PMID: 17435007; PLANT SCIENCE 168:747-759], glutathione S-transferase (sigma class) (GST class-sigma) (Glutathione-dependent PGD synthetase) (Prostaglandin-H2 D-isomerase) (Hematopoietic prosta g16150.t1,Cre01.g064400.t1.1,Cre01.g064400.t1.2,GST2 PF02798,PF00043 PTHR11571:SF16,PTHR11571 KOG1695 - - GO:0005515 AT1G49860.1 ATGSTF14,GSTF14 glutathione S-transferase (class phi) 14 Cre12.g535800 - 0 12 1.0 1.0 0 12 1.0 1.0 M n - 16 - - g13178.t1 - PTHR19959 - - - - AT1G01320.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre10.g456550 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g11203.t1 - - - - - - - - - Cre10.g422201 CTP4 - 0 1 1.0 nan 0 1 1.0 nan M n - 6 - - g10445.t1,Cre10.g422200.t1.2 PF00702,PF00122,PF00403 PTHR24093,PTHR24093:SF26 KOG0207 - - GO:0003824,GO:0008152,GO:0000166,GO:0046872,GO:0030001 AT5G21930.1 ATHMA8,HMA8,PAA2 P-type ATPase of Arabidopsis 2 Cre06.g302551 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g7005.t1 - - - - - - - - - Cre07.g312580 - 0 1 1.0 nan 0 1 1.0 nan - n - 16 - - g7232.t1,Cre07.g312580.t1.1 - - - - - - - - - Cre16.g672000 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g16687.t1,Cre16.g672000.t1.1 - - - - - - - - - Cre14.g619613 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g14930.t1,Cre14.g619613.t1.1 PF04855 - KOG0108 - - GO:0000228,GO:0006338 AT3G17590.1 BSH,CHE1 transcription regulatory protein SNF5, putative (BSH) Cre06.g311250 - 0 11 1.0 1.0 0 11 1.0 1.0 M n - 10 - - g7201.t1 PF02181 PTHR23213:SF66,PTHR23213 - - - - AT5G07740.1 - actin binding Cre14.g615100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g14819.t1,Cre14.g615100.t1.1 PF01641 PTHR10173:SF0,PTHR10173 KOG0856 - - GO:0008113,GO:0055114 AT4G21860.1 MSRB2 methionine sulfoxide reductase B 2 Cre09.g387652 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g9592.t1,Cre02.g122150.t1.1,Cre02.g122150.t1.2 PF05686 PTHR12203 - - - - AT1G63420.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre10.g465575 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g11408.t1,Cre10.g465593.t1.2 - - - - - - - - - Cre09.g412350 - 0 8 1.0 1.0 0 8 1.0 1.0 O n upregulated 2 - - g10209.t2,Cre09.g412350.t1.1, g10209.t1 - PTHR16557 - - - - AT3G14160.1 - 2-oxoglutarate-dependent dioxygenase family protein Cre01.g016556 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g395.t1 PF01214 PTHR11740 KOG3092 - K03115 GO:0005956,GO:0019887 AT4G17640.1 CKB2 casein kinase II beta chain 2 Cre17.g704600 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g17080.t1,Cre17.g704600.t1.1 PF04930 PTHR21346 - - - - - - - Cre03.g172700 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 17 - - g3561.t1,Cre03.g172700.t1.1 - - - - - - - - - Cre13.g602750 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 15 - - g14565.t1,Cre13.g602750.t1.1 - - - - - - AT2G39250.1 SNZ Integrase-type DNA-binding superfamily protein Cre13.g577850 FKB20-2,FKB20 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 4 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase); probably targeted to thylakoid lumen (TP length 31 + RR motif); [PMID: 15701785] g14198.t1,FKB20 - - - - - - AT3G60370.1 - FKBP-like peptidyl-prolyl cis-trans isomerase family protein Cre10.g419300 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 17 - - g10379.t1,Cre10.g419300.t1.1 - - - - - - - - - Cre01.g001300 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 13 - - g29.t1 - - - - - - - - - Cre09.g396438 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 18 - - g9836.t1,Cre02.g133100.t1.1 - - - - - - - - - Cre03.g171179 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g3527.t1,Cre03.g171179.t1.1 - - - - - - - - - Cre03.g207550 ADH8 - 0 10 1.0 1.0 0 10 1.0 1.0 M n - 7 - - g4158.t1,Cre03.g207550.t1.1,ADH8 PF08240,PF00107 PTHR11695,PTHR11695:SF285 KOG0023 - - GO:0008270,GO:0016491,GO:0055114 AT4G37990.1 ATCAD8,CAD-B2,ELI3,ELI3-2 elicitor-activated gene 3-2 Cre07.g319600 FAE3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g7392.t1,Cre07.g319600.t1.1,FAE3 PF08392,PF08541 - - - - GO:0006633,GO:0016020,GO:0016747,GO:0008610 AT1G68530.1 CER6,CUT1,G2,KCS6,POP1 3-ketoacyl-CoA synthase 6 Cre07.g326150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g7585.t1 - PTHR14493,PTHR14493:SF7 - - - - AT5G12850.1 - CCCH-type zinc finger protein with ARM repeat domain Cre02.g103600 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g2117.t1 - - - - - - - - - Cre03.g189150 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 - - g3917.t1 - - - - - - - - - Cre08.g382689 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g9009.t1,Cre08.g382689.t1.1 PF00240 PTHR10666 KOG0001 - - GO:0005515 AT1G55060.1 UBQ12 ubiquitin 12 Cre12.g546750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g13620.t1 - - - - - - - - - Cre14.g630200 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g15177.t1, g15177.t2,Cre14.g630200.t1.1 - - - - - - - - - Cre16.g659550 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 14 - - g15932.t1, g15932.t2, g15932.t3 PF04488, PF04488,PF04572 PTHR12042,PTHR12042:SF4 - 2.4.1.228 K01988 GO:0005795,GO:0008378 AT4G19900.1 - alpha 1,4-glycosyltransferase family protein Cre12.g505700 GTF5 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g12453.t1,Cre12.g505700.t1.1,GTF5 PF00352 PTHR10126:SF6,PTHR10126 KOG3302 - K03120 GO:0003677,GO:0003702,GO:0006355,GO:0006367 AT3G13445.1 TBP1,TFIID-1 TATA binding protein 1 Cre16.g688000 MITC2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 Mitochondrial substrate carrier protein Mitochondrial substrate carrier protein. Previously annotated as MITC2 g16327.t1,MITC2 PF00153 PTHR24089:SF45,PTHR24089 KOG0768 - - - AT4G39460.1 SAMC1,SAMT1 S-adenosylmethionine carrier 1 Cre08.g368800 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8643.t1,Cre08.g368800.t1.1, g8643.t2 - - - - - - - - - Cre17.g735250 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g17787.t1,Cre17.g735250.t1.1 - - - - - - - - - Cre06.g256950 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g5774.t1,Cre06.g256950.t1.1 - - - - - - - - - Cre12.g484750 CLH2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g12031.t1,CLH2 PF07224 - - - - GO:0047746 AT5G43860.1 ATCLH2,CLH2 chlorophyllase 2 Cre10.g436250 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g10756.t1,Cre10.g436250.t1.1 - - - - - - - - - Cre08.g367800 NDH2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 - - g8617.t1,Cre08.g367800.t1.1,NDH2 PF00293 PTHR13994 KOG0648 - - GO:0016787 AT5G47240.1 atnudt8,NUDT8 nudix hydrolase homolog 8 Cre17.g732700 CUTC1,CUT2,CUTC - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 Copper homeostasis protein cutC Copper homeostasis protein cutC. Previously annotated as CUTC g17706.t1,Cre17.g732700.t1.1,CUT2,CUTC PF03932 PTHR12598 - - K06201 GO:0005507,GO:0055070 - - - Cre16.g664250 OASTL2,ASL2 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 O-acetylserine (Thiol)-lyase/cysteine synthase O-acetylserine (thiol)-lyase, O-acetylserine sulfhydrylase. Previously annotated as OASTL2 g16037.t1,Cre16.g664250.t1.1,ASL2 PF00291 PTHR10314,PTHR10314:SF32 KOG1481 2.5.1.47 K01738 GO:0003824,GO:0008152,GO:0030170 AT1G55880.1 - Pyridoxal-5\'-phosphate-dependent enzyme family protein Cre17.g723300 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 15 - - g17496.t1 PF00069 PTHR24055:SF157,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT1G71530.1 - Protein kinase superfamily protein Cre12.g504050 LAG2 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 Predicted protein related to longevity assurance protein Related to longevity assurance protein; TRAM, LAG1 and CLN8 domain homology; possibly involved in ceramide synthesis g12488.t1,LAG2 PF03798 PTHR12560 - - - GO:0016021 AT3G25540.1 LAG1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein Cre07.g315100 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g7290.t1,Cre07.g315100.t1.1 PF06110 PTHR12452 KOG3425 - - - AT5G42850.1 - Thioredoxin superfamily protein Cre07.g327250 - 0 8 1.0 1.0 0 8 1.0 1.0 M n downregulated 14 - - g7611.t1 - - - - - - - - - Cre03.g206201 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g4188.t1 - - - - - - - - - Cre03.g206200 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 18 - - g4187.t1, g4187.t2 - - - - - - - - - Cre03.g206203 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g4190.t1,Cre03.g206050.t1.3, g4190.t2,Cre03.g206050.t2.1 - - - - - - - - - Cre03.g206202 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g4189.t1,Cre03.g206100.t1.3 PF00069 PTHR24055:SF168,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT1G33770.1 - Protein kinase superfamily protein Cre07.g318950 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 16 - - g7372.t1,Cre07.g318950.t1.1 PF00168 - - - - GO:0005515 - - - Cre01.g035450 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 14 - - g799.t1,Cre01.g035450.t1.1 PF01027 PTHR23291,PTHR23291:SF15 KOG2322 - K06890 - AT1G03070.1 - Bax inhibitor-1 family protein Cre13.g579450 CST1 - 0 14 1.0 1.0 0 14 1.0 1.0 SP n - 12 Chlamy-specific membrane transporter of unknown function Transmembrane protein; shows similarity to various transporters and permeases; highly expressed; small gene family appears specific to Chlamydomonas g14235.t1,CST1 - - - - - - - - - Cre06.g306350 FDX3 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Ferredoxin Fe2S2 containing redox protein, predicted chloroplast localization g7097.t1,Cre06.g306350.t1.1 PF00111 - KOG3309 - - GO:0009055,GO:0051536 AT1G60950.1 ATFD2,FED A 2Fe-2S ferredoxin-like superfamily protein Cre16.g680300 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 - - g16502.t1,Cre16.g680300.t1.1 PF00657 - - - - GO:0006629,GO:0016788 - - - Cre10.g451250 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 15 - - g11089.t1 PF00211 PTHR13620 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre04.g231320 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5050.t1 - - - - - - - - - Cre06.g274950 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - - - - g6165.t1 PF00400,PF02138 PTHR13743 - - - - AT2G45540.2 - WD-40 repeat family protein / beige-related Cre15.g639950 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15403.t1 - - - - - - - - - Cre12.g512300 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 14 - - g12300.t1,Cre12.g512300.t1.1 PF00305 PTHR11771,PTHR11771:SF2 - 1.13.11.12 K00454 GO:0046872,GO:0016702,GO:0055114 AT1G55020.1 ATLOX1,LOX1 lipoxygenase 1 Cre13.g575175 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g14136.t1 - - - - - - - - - Cre11.g468500 MPA8 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - - - g11764.t1,MPA8 PF00149 PTHR22953 KOG1378 - - GO:0016787 AT5G50400.1 ATPAP27,PAP27 purple acid phosphatase 27 Cre17.g710050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 1 - - g17197.t1 PF03547 PTHR23257:SF336,PTHR23257 - - - GO:0016021,GO:0055085 - - - Cre06.g277600 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g6221.t1,Cre06.g277600.t1.1 - - - - - - - - - Cre06.g280550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g6526.t1 PF00076 PTHR23139 - - K13107 GO:0003676 AT3G47120.1 - RNA recognition motif (RRM)-containing protein Cre06.g272050 GPM1,PGM1 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Phosphoglyceromutase (EC 5.4.2.1); probably plastid form. Two splice variants are expected g6104.t1,Cre06.g272050.t1.1,PGM1 PF01676,PF06415 - KOG4513 5.4.2.1 K01834 GO:0003824,GO:0046872,GO:0004619,GO:0005737,GO:0006007,GO:0030145 AT3G08590.1 - Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent Cre17.g745747 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g18031.t1,Cre20.g759200.t2.1, g18031.t2,Cre20.g759200.t1.1 PF07059 - - - - - AT5G45560.1 - Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein Cre15.g640152 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g15397.t1,Cre15.g640152.t1.1 - - - - - - - - - Cre15.g640150 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 13 - - g15398.t1 - - - - - - - - - Cre09.g388689 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 17 - - g9620.t1,Cre02.g123450.t1.1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre12.g529700 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g13041.t1,Cre12.g529700.t1.1 PF05517 - - - - - - - - Cre01.g031600 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g714.t1,Cre01.g031600.t1.1 PF05915 PTHR15664 KOG4753 - - - AT2G19350.1 - Eukaryotic protein of unknown function (DUF872) Cre07.g324750 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g7501.t1,Cre07.g324750.t1.1 - - - - - - - - - Cre12.g521550 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - - - - g12848.t1 PF02493,PF00630 PTHR23084,PTHR23084:SF27 - - - - AT2G26420.1 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 Cre03.g192250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g3979.t1 - - - - - - - - - Cre03.g188850 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g3911.t1,Cre03.g188850.t1.1 PF00069 PTHR26263,PTHR26263:SF43 - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre10.g450700 TNP26 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g11076.t1,TNP26 PF07282 PTHR23257,PTHR23257:SF99 - - - - - - - Cre02.g083700 LSP1 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 Signal transducer for phototaxis Putative signal transducer for phototaxis; essential for normal phototaxis behavior [PMID: 15657081, independent sequence: AB194902] g1541.t1,LSP1 - - - - - - - - - Cre08.g364050 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8525.t1,Cre08.g364050.t1.1 PF00249 PTHR12802,PTHR12802:SF6 - - K11649 - AT1G21700.1 ATSWI3C,CHB4,SWI3C SWITCH/sucrose nonfermenting 3C Cre13.g588950 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 13 - - g14448.t1,Cre13.g588950.t1.1 - - - - - - - - - Cre10.g456700 EJC1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 8 - - g11207.t1,Cre10.g456700.t1.1,EJC1 PF09405 - - - - - AT1G80000.1 - CASC3/Barentsz eIF4AIII binding Cre08.g377650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8892.t1,Cre08.g377650.t1.1 - - - - - - - - - Cre13.g588959 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 11 - - g14449.t1,Cre13.g588959.t1.1 - - - - - - - - - Cre12.g515650 EIF3K - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - Eukaryotic translation initiation factor 3, subunit K Eukaryotic translation initiation factor, subunit K. Also known as eIF3 subunit 11 /12, eIF-3 p25, and eIF3k g12721.t1,Cre12.g515650.t1.1,EIF3K PF10075 PTHR13022 KOG3252 - - GO:0003743,GO:0005634,GO:0006413 AT4G33250.1 ATTIF3K1,EIF3K,TIF3K1 eukaryotic translation initiation factor 3K Cre12.g501702 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g12542.t1 - - - - - - - - - Cre12.g501700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g12541.t1 - - - - - - - - - Cre09.g389150 FAP93 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g9515.t1,Cre09.g389150.t1.1 - - - - - - - - - Cre06.g279600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 9 - - g6501.t1 - - - - - - - - - Cre16.g690450 FAP266 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g16206.t1 PF02493 PTHR23084 - - - - AT2G41210.1 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 Cre08.g382300 CCB4 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 12 CGLD23 protein, required for cyt b6 assembly CGLD23, involved in covalent heme binding to cyt b6; conserved in plant lineage and diatoms (organisms performing oxygenic photosynthesis). The protein is localized to the chloroplast and homologous to CCB2. PMID: 17535914 g8994.t1,Cre08.g382300.t1.1 PF11152 - - - - - AT1G59840.1 CCB4 cofactor assembly of complex C Cre03.g200207 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g4368.t1 - - - - - - - - - Cre02.g105450 CGL141 - 0 4 1.0 1.0 0 4 1.0 1.0 O Y - - - - g2162.t1 - - - - - - AT3G04560.1 - - Cre02.g077061 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g1388.t1,Cre02.g077050.t1.3 PF00892 - - - - GO:0016020 - - - Cre07.g338850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g7882.t1,Cre07.g338850.t1.1, g7882.t2 - - - - - - - - - Cre03.g200200 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g4323.t1 PF00069 PTHR24055,PTHR24055:SF160 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT1G53510.1 ATMPK18,MPK18 mitogen-activated protein kinase 18 Cre12.g513550 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 11 - - g12678.t1,Cre12.g513550.t1.1 - - - - - - - - - Cre10.g433476 - 0 3 1.0 1.0 0 3 1.0 1.0 - n - 7 - - g10693.t1 - - - - - - - - - Cre06.g275050 GGH2 - 0 1 1.0 nan 0 1 1.0 nan SP n - 1 Gamma-glutamyl hydrolase Putative gamma-glutamyl hydrolase, folate metabolism, ER targeting sequence predicted by Predotar. g6168.t1,GGH2 PF07722 PTHR11315 KOG1559 3.4.19.9 K01307 GO:0006541,GO:0016787,GO:0003824,GO:0008242 AT1G78660.1 ATGGH1,GGH1 gamma-glutamyl hydrolase 1 Cre12.g527250 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 5 - - g12989.t1,Cre12.g527250.t1.1 - - - - - - - - - Cre04.g222050 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 11 - - g4846.t1 - - - - - - - - - Cre17.g747797 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 Mitochondrial substrate carrier protein, possible carnitine/acylcarnitine carrier Mitochondrial substrate carrier protein, possible carnitine/acylcarnitine carrier. Previously annotated as MITC9 g18072.t1,Cre20.g757600.t2.1, g18072.t2,Cre20.g757600.t1.1,Cre20.g757600.t1.2 PF00153 PTHR24089:SF126,PTHR24089 KOG0758 - - - AT2G33820.1 ATMBAC1,MBAC1 Mitochondrial substrate carrier family protein Cre03.g191250 LCI34 - 0 8 1.0 1.0 0 8 1.0 1.0 C n downregulated 18 Low-CO2-inducible protein Low-CO2 inducible gene revealed by cDNA array analyses; TargetP prediction: Mitochondria (confidence: 4); regulated by CCM1. PMID:15235119 g3958.t1,Cre03.g191250.t1.1 - - - - - - - - - Cre16.g685400 TIC32-3,SDR26 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 Short-chain dehydrogenase/reductase Short-chain dehydrogenase/reductase, possibly protochlorophyllide reductase or retinol dehydrogenase. Similar to Tic32 from Pisum sativum (AAS38575); belongs to the classical family of short chain dehydrogenases [PMID: 15180984]. Previously annotated as g16389.t1,Cre16.g685400.t1.1,SDR26,TIC32-3 PF00106 PTHR24316:SF98,PTHR24316 KOG1208 - - GO:0008152,GO:0016491 AT4G23420.3 - NAD(P)-binding Rossmann-fold superfamily protein Cre01.g045825 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g1028.t1,Cre01.g045850.t1.3 - - - - - - - - - Cre03.g174076 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g3591.t1 - - - - - - - - - Cre14.g630895 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g15202.t2, g15202.t1 PF01494 PTHR13789,PTHR13789:SF42 - - - GO:0004497,GO:0055114 AT1G24340.1 EMB2421,EMB260 FAD/NAD(P)-binding oxidoreductase family protein Cre13.g570250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g14028.t1 PF00069 PTHR24343 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT3G01090.2 AKIN10,KIN10,SNRK1.1 SNF1 kinase homolog 10 Cre17.g717700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g17370.t1 - - - - - - AT4G04614.1 - - Cre08.g381650 - 0 1 1.0 nan 0 1 1.0 nan M n - 5 - - g8981.t1 PF05705 PTHR12265 KOG2521 - - - AT3G19970.1 - alpha/beta-Hydrolases superfamily protein Cre13.g589300 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g14457.t1,Cre13.g589300.t1.1 PF05786 PTHR13108 - - - - AT2G32590.1 - - Cre13.g573500 FAP95 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG12 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400] g14100.t1,Cre13.g573500.t1.1 - - - - - - - - - Cre06.g262100 GSHR1,GSR1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 Glutathione reductase Glutathione reductase (GR) (Grase). Previously annotated as GSHR1 g5889.t1,GSHR1,GSR1 PF07992,PF02852,PF00070 PTHR22912,PTHR22912:SF27 KOG0405 1.8.1.7 K00383 GO:0005737,GO:0016491,GO:0045454,GO:0050660,GO:0055114 AT3G24170.1 ATGR1,GR1 glutathione-disulfide reductase Cre09.g395750 - 0 25 1.0 1.0 0 25 1.0 1.0 O n upregulated 18 - - g9374.t1 PF01061,PF08370,PF00005 PTHR19241,PTHR19241:SF10 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT2G26910.1 ATPDR4,PDR4 pleiotropic drug resistance 4 Cre02.g092550 TPR1 - 0 1 1.0 nan 0 1 1.0 nan O Y - 2 - - g1735.t1 - PTHR10516,PTHR10516:SF27 KOG0553 - - - AT5G21990.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre03.g165215 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 13 - - g3389.t1 PF00899 PTHR10953 KOG2337 - K08337 GO:0003824 AT5G45900.1 APG7,ATAPG7,ATATG7,ATG7 ThiF family protein Cre06.g278269 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g6411.t1,Cre13.g601750.t1.1 - PTHR21704,PTHR21704:SF8 - - K06672 - AT5G15540.1 ATSCC2,EMB2773,SCC2 PHD finger family protein Cre06.g278268 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g6409.t2, g6409.t1 - - - - - - - - - Cre06.g278267 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 7 - - g6408.t1 - - - - - - - - - Cre13.g604950 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 9 - - g14592.t3, g14592.t2, g14592.t1 - - - - - - - - - Cre06.g278265 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g6406.t1,Cre13.g601550.t1.1 PF00069 PTHR24349,PTHR24349:SF98 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT4G32830.1 AtAUR1,AUR1 ataurora1 Cre06.g278264 - 0 1 1.0 nan 0 1 1.0 nan C n - 5 - - g6405.t1,Cre13.g601500.t1.1,Cre13.g601500.t1.2 PF07082 - - - - - AT3G43540.1 - Protein of unknown function (DUF1350) Cre06.g278263 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 5 - - g6404.t1,Cre13.g601450.t1.1 PF00561 PTHR10794 KOG1838 - K07019 - AT3G50790.1 - esterase/lipase/thioesterase family protein Cre06.g278262 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 5 - - g6403.t1 - - - - - - - - - Cre06.g278261 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g6402.t1,Cre13.g601350.t1.1,Cre13.g601350.t1.2 PF02567 PTHR13774 KOG3033 - K06998 GO:0003824,GO:0009058 AT4G02860.1 - Phenazine biosynthesis PhzC/PhzF protein Cre06.g278260 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g6401.t1,Cre13.g601300.t1.1 PF00481 PTHR13832,PTHR13832:SF142 KOG0698 - - GO:0003824 AT1G79630.1 - Protein phosphatase 2C family protein Cre06.g263850 PPT2,TPT2 - 0 1 1.0 nan 0 1 1.0 nan C n - 3 Triose phosphate/phosphate translocator Related to triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT). Also known as PPT2 (see GI:32815801) g5929.t1,PPT2,TPT2 PF03151,PF00892 PTHR11132 KOG1441 - - GO:0016020 AT5G33320.1 ARAPPT,CUE1,PPT Glucose-6-phosphate/phosphate translocator-related Cre01.g038800 MIP3 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g868.t1,Cre01.g038800.t1.1,MIP3 PF00230 PTHR19139,PTHR19139:SF3 KOG0223 - - GO:0005215,GO:0006810,GO:0016020 AT5G18290.1 SIP1;2,SIP1B Aquaporin-like superfamily protein Cre04.g223900 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - - - g4887.t1 PF08172 PTHR14043:SF2,PTHR14043 KOG0963 - - GO:0006891,GO:0030173 AT3G18480.1 AtCASP,CASP CCAAT-displacement protein alternatively spliced product Cre03.g196800 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g4076.t1,Cre03.g196800.t1.1 PF01679 PTHR21659 KOG1773 - - GO:0016021 AT4G30660.1 - Low temperature and salt responsive protein family Cre12.g545900 MAPKKK9 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g13637.t1,Cre12.g545900.t1.1,MAPKKK9 - - - - - - - - - Cre10.g465000 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g11393.t1 PF00069 PTHR11795:SF312,PTHR11795 - - - GO:0004672,GO:0005524,GO:0006468 AT2G40580.1 - Protein kinase superfamily protein Cre09.g392252 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 11 - - g9448.t1 PF06839,PF00098 - - - - GO:0008270,GO:0003676 AT3G42860.1 - zinc knuckle (CCHC-type) family protein Cre12.g490450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g12176.t1 - - - - - - - - - Cre01.g053150 GPD3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Glycerol-3-phosphate dehydrogenase/dihydroxyacetone-3-phosphate reductase - g1174.t2,Cre01.g053150.t1.1, g1174.t1 PF07479,PF00702,PF01210 PTHR11728 KOG2711 - - GO:0005975,GO:0016614,GO:0055114,GO:0003824,GO:0008152,GO:0004367,GO:0006072,GO:0009331,GO:0005737,GO:0016616,GO:0046168,GO:0051287 AT5G40610.1 - NAD-dependent glycerol-3-phosphate dehydrogenase family protein Cre07.g323100 STPK7,STK7 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK7 g7464.t1,STK7,STPK7 PF00069 PTHR22967,PTHR22967:SF47 KOG1989 2.7.11.1 K08853 GO:0004672,GO:0005524,GO:0006468 AT2G32850.2 - Protein kinase superfamily protein Cre02.g113652 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g2343.t1, g2343.t2 - PTHR24320 KOG1208 - - - AT4G23420.3 - NAD(P)-binding Rossmann-fold superfamily protein Cre07.g329050 AOC5,NCD7 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 15 Cationic amino acid transporter Related to human SLC7A family of solute carriers, involved in cationic amino acid transport (arginine, lysine, ornithine); this is probably the gene mutated in the L-canavanine resistant mutant can1, which is closely linked to pf17, because the PF17 gene g7651.t1,Cre07.g329050.t1.1,AOC5,NCD7 PF00324 PTHR11785,PTHR11785:SF53 KOG1286 - - GO:0006810,GO:0016020,GO:0055085,GO:0003333,GO:0015171 AT4G21120.1 AAT1,CAT1 amino acid transporter 1 Cre06.g281250 CFA1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 Cyclopropane fatty acid synthase Cyclopropane fatty acid synthase, uses AdoMet to introduce a methylene group into fatty acids g6541.t1,Cre06.g281250.t1.1,CFA1 PF02353,PF01593 PTHR10108,PTHR10108:SF415 - 2.1.1.79 K00574 GO:0008610 AT3G23510.1 - Cyclopropane-fatty-acyl-phospholipid synthase Cre12.g545401 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g13652.t1 - - - - - - - - - Cre13.g565083 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13902.t1 - - - - - - - - - Cre14.g622800 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g15010.t1 PF01764 PTHR21493,PTHR21493:SF21 - - - GO:0004806,GO:0006629 AT2G42450.1 - alpha/beta-Hydrolases superfamily protein Cre12.g538650 HEM4 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - Uroporphyrinogen-III synthase Putative uroporphyrin III methyltransferase (part). [=HEMD; COBA; CYSG]. g13244.t1,HEM4 PF00590 PTHR21091,PTHR21091:SF16 - - - GO:0008152,GO:0008168 AT5G40850.1 UPM1 urophorphyrin methylase 1 Cre01.g012800 FAP230 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein, basal body protein of unknown function; found in the flagellar proteome [PMID: 15998802]; found in basal body proteome as BUG19 [PMID: 15964273] g316.t1, g316.t2 - - - - - - - - - Cre23.g754847 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g18242.t1,Cre39.g785900.t1.1,Cre39.g785900.t1.2 - - - - - - - - - Cre09.g403182 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10039.t1 - PTHR10145 KOG1856 - K11292 - AT1G65440.1 GTB1 global transcription factor group B1 Cre07.g339950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g7909.t1, g7909.t2 - - - - - - - - - Cre11.g482600 - 0 1 1.0 nan 0 1 1.0 nan M n - 5 - - g11980.t1 - - - - - - - - - Cre07.g355350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g8263.t1,Cre07.g355350.t1.1 - - - - - - - - - Cre13.g569850 AMT4 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated - Ammonium transporter Belongs to AMT1 family (AMT1;4 or AMT1.4); corresponds to AY542491, mRNA complete cds (PMID: 15821986). Previously annotated as AMT1D g14020.t1,Cre13.g569850.t1.1,AMT4 PF00909 PTHR11730:SF8,PTHR11730 KOG0682 - - GO:0008519,GO:0016020,GO:0072488 AT1G64780.1 AMT1;2,ATAMT1;2 ammonium transporter 1;2 Cre01.g030350 CGL41 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 Predicted protein Conserved expressed protein of unknown function g688.t1 PF02341 - - - - - AT4G04330.1 - Chaperonin-like RbcX protein Cre09.g409550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g10148.t1 - - - - - - - - - Cre03.g169000 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g3479.t1,Cre03.g169000.t1.1 - - - - - - - - - Cre09.g395288 NHA1 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 3 Sodium ion/proton transporter protein Sodium:hydrogen antiporter NhaD. Previously annotated as NHAD1 g9805.t1,Cre02.g131700.t1.1,NHA1 PF03600 PTHR10283,PTHR10283:SF42 KOG2639 - - GO:0015137,GO:0015746,GO:0016021,GO:0055085 AT3G19490.1 ATNHD1,NHD1 sodium:hydrogen antiporter 1 Cre13.g568100 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g13979.t1 PF00089 - - - - GO:0004252,GO:0006508 - - - Cre07.g340100 MOT13 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g7912.t1,Cre07.g340100.t1.1,MOT13 PF07496 - KOG4571 - - GO:0008270 AT3G54460.1 - SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein Cre09.g408600 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g10126.t1,Cre09.g408600.t1.1 PF02900 - - - - GO:0006725,GO:0008198,GO:0016491 AT4G15093.1 - catalytic LigB subunit of aromatic ring-opening dioxygenase family Cre01.g003550 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g89.t1 PF00581 - KOG1530 - - - AT4G27700.1 - Rhodanese/Cell cycle control phosphatase superfamily protein Cre03.g149300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 - - g3036.t1 PF04055,PF00919 PTHR11918:SF41,PTHR11918 KOG4355 - - GO:0003824,GO:0051536,GO:0009451,GO:0051539 AT1G72090.1 - Methylthiotransferase Cre13.g563300 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 16 - - g13860.t1 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre12.g556050 PRPL9 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 Plastid ribosomal protein L9 Chloroplast ribosomal protein L9, imported to chloroplast; Chloroplast large ribosomal subunit protein L9 g13411.t1,Cre12.g556050.t1.1 PF03948,PF01281 PTHR21368:SF17,PTHR21368 KOG4607 - K02939 GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT3G44890.1 RPL9 ribosomal protein L9 Cre01.g045000 PRL9 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 Predicted extracellular protein Similar to pathogenesis-related protein 1, extracellular g1005.t1,Cre01.g045000.t1.1,PRL9 PF00188 PTHR10334,PTHR10334:SF60 - - - - AT4G31470.1 - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Cre07.g340300 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7916.t1,Cre07.g340300.t1.1 PF00069 PTHR23257:SF340,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G50720.1 - Protein kinase superfamily protein Cre09.g391500 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g9462.t1 PF04109 PTHR13038,PTHR13038:SF10 - - - - AT2G31260.1 APG9,ATAPG9 autophagy 9 (APG9) Cre13.g564350 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 9 - - g13884.t1,Cre13.g564350.t1.1, g13884.t2 PF02260,PF00454 PTHR11139:SF3,PTHR11139 - 2.7.11.1 K04728 GO:0004674,GO:0005515,GO:0016773, GO:0005515,GO:0004674,GO:0016773 AT3G48190.1 ATATM,ATM ataxia-telangiectasia mutated Cre03.g151250 LANC1,LAN1 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 9 LanC lantibiotic synthetase component C-like protein Similar to LanC lantibiotic synthetase component C. Previously annotated as LANC1 g3078.t1,LAN1,LANC1 PF05147 PTHR12736:SF7,PTHR12736 KOG2787 - - - AT2G20770.1 GCL2 GCR2-like 2 Cre10.g430350 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g10627.t1,Cre10.g430350.t1.1 - - - - - - - - - Cre04.g220424 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g4808.t1 - - - - - - - - - Cre07.g350450 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g8152.t1 PF00097 - KOG4172 - - - AT5G01960.1 - RING/U-box superfamily protein Cre07.g350451 - 0 17 1.0 1.0 0 17 1.0 1.0 O n - - - - g8153.t1,Cre07.g350451.t1.1 PF00400,PF05729 PTHR22847,PTHR22847:SF221 KOG0266 - - - AT3G49660.1 - Transducin/WD40 repeat-like superfamily protein Cre12.g513300 CGL23 - 0 4 1.0 1.0 0 4 1.0 1.0 O Y - 11 Predicted protein Conserved expressed protein g12673.t1,Cre12.g513300.t1.1 - - - - - - AT1G74530.3 - - Cre14.g614200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g14799.t1,Cre14.g614200.t1.1 - - - - - - - - - Cre08.g374700 FAP244 - 0 17 1.0 1.0 0 17 1.0 1.0 O n - 13 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g8827.t1 PF00400 PTHR19924,PTHR19924:SF13 - - - - - - - Cre09.g400450 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - - - g9260.t2, g9260.t3, g9260.t1 PF00069 PTHR23257 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre16.g687117 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 16 - - g16348.t1,Cre16.g687117.t1.1 - - - - - - - - - Cre06.g254850 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g5731.t1 - - KOG2652 - - - - - - Cre10.g442300 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g10882.t1,Cre10.g442300.t1.1, g10882.t2 - - - - - - - - - Cre01.g002201 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g52.t2,Cre01.g002201.t1.1, g52.t1 PF04031 PTHR15002 - - - - AT5G12220.1 - las1-like family protein Cre01.g002200 RPB6 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 Subunit of DNA-directed RNA polymerase Putative DNA-directed RNA polymerase subunit, sequence similarity to yeast RNB6 (13-15 kDa) g50.t1,RPB6 PF01192 PTHR10773 KOG3405 - K03014 GO:0003677,GO:0003899,GO:0006351 AT5G51940.1 NRPB6A,NRPD6A,NRPE6A RNA polymerase Rpb6 Cre01.g002203 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g51.t1 - - - - - - - - - Cre02.g108050 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 10 - - g2215.t1,Cre02.g108050.t1.1 - - KOG1962 - - - AT5G42570.1 - B-cell receptor-associated 31-like Cre04.g232006 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g5058.t1,Cre32.g781350.t1.1,Cre32.g781350.t1.2 - - - - - - - - - Cre07.g351500 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g8177.t1 PF01541 PTHR20208 - - - GO:0004518,GO:0005622,GO:0006281 AT2G30350.2 - Excinuclease ABC, C subunit, N-terminal Cre17.g697750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g16922.t1,Cre17.g697750.t1.1 - - - - - - - - - Cre17.g747497 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g18066.t1,Cre20.g757900.t1.1 - - - - - - - - - Cre13.g567100 GLDH,ALO1 - 0 1 1.0 nan 0 1 1.0 nan M n - 5 D-arabinono-1,4-lactone oxidase/L-galactono-1,4-lactone dehydrogenase Putative mitochondrial D-arabinono-1,4-lactone oxidase/L-Galactono-1,4-Lactone Dehydrogenase. Similar to At3g47930 gene product of Arabidopsis found associated with mitochondrial complex I (PMID: 12837548). Previously annotated as GLDH g13955.t1,ALO1,GLDH PF01565,PF04030 PTHR13878,PTHR13878:SF6 KOG4730 1.3.2.3 K00225 GO:0016491,GO:0050660,GO:0003885,GO:0016020,GO:0055114 AT3G47930.1 ATGLDH,GLDH L-galactono-1,4-lactone dehydrogenase Cre16.g661700 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g15979.t1,Cre16.g661700.t1.1 PF11938 PTHR13341,PTHR13341:SF2 KOG3782 - - - AT1G42480.1 - - Cre10.g448650 KDG5 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g11030.t1,KDG5 PF00781 PTHR12358,PTHR12358:SF4 - - - GO:0004143,GO:0007205 AT2G46090.1 - Diacylglycerol kinase family protein Cre06.g286750 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g6662.t1,Cre06.g286750.t1.1 - PTHR17408 - - - - - - - Cre12.g551050 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g13524.t1,Cre12.g551050.t1.1 PF03066 - - - - GO:0003676 - - - Cre07.g353900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g8233.t1,Cre07.g353900.t1.1 - - - - - - - - - Cre11.g480600 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11930.t2, g11930.t1,Cre11.g480600.t1.1 - - - - - - - - - Cre03.g148950 CGL43,PNT1 - 0 5 1.0 1.0 0 5 1.0 1.0 C Y upregulated 4 Putative organellar polyribonucleotide phosphorylase/nucleotidyltransferase Putative organellar polyribonucleotide phosphorylase/nucleotidyltransferase. RNA binding protein with S1 domain. Green-lineage conserved protein. Previously annotated as CGL43 g3029.t1,Cre03.g148950.t1.1,PNT1 PF00575 PTHR10287 - - - GO:0003723 AT3G23700.1 - Nucleic acid-binding proteins superfamily Cre01.g047850 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 9 - - g1063.t1,Cre01.g047850.t1.1 PF00155 PTHR11751,PTHR11751:SF25 KOG0259 - - GO:0009058,GO:0016769,GO:0030170 AT1G77670.1 - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Cre14.g615550 TGL19 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 1 - - g14829.t1,TGL19 PF01764 - - - - GO:0004806,GO:0006629 AT1G45201.2 ATTLL1,TLL1 triacylglycerol lipase-like 1 Cre21.g753247 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g18194.t1 - - - - - - - - - Cre17.g740850 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g17919.t1,Cre17.g740850.t1.1 - - - - - - AT5G47490.1 - RGPR-related Cre06.g278091 - 0 1 1.0 nan 0 1 1.0 nan SP n - 3 - - g6235.t1,Cre13.g593150.t1.1 - - KOG4817 - - - - - - Cre06.g278092 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g6236.t2, g6236.t1 - - KOG4172 - - - - - - Cre06.g278093 ELG20 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - - Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g6237.t1,Cre13.g593250.t1.1,ELG20 PF03016 PTHR11062,PTHR11062:SF12 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre06.g278094 ELG14 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g6238.t1,Cre13.g593300.t1.1,ELG14 PF03016 PTHR11062,PTHR11062:SF12 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre06.g278095 - 0 14 1.0 1.0 0 14 1.0 1.0 O n downregulated 10 - - g6239.t1,Cre13.g593350.t1.1, g6239.t2,Cre13.g593350.t2.1 PF00350 - - - - GO:0003924,GO:0005525 - - - Cre06.g278098 MCC1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 18 Methylcrotonoyl-CoA carboxylase alpha subunit Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor; 3-methylcrotonyl-CoA carboxylase; biotin-dependent carboxylase. Previously annotated as MCCA. Contains a very short LSU-rRNA motif on the opposite strand (4456221-4456270), in intro g6242.t1,Cre13.g593500.t1.1,MCC1 PF02785,PF00364,PF02786,PF00289 PTHR18866:SF43,PTHR18866 KOG0238 6.4.1.4 K01968 GO:0016874,GO:0003824,GO:0005524,GO:0008152 AT1G03090.2 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) Cre06.g278099 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 10 - - g6243.t1,Cre13.g593550.t1.1 - - - - - - - - - Cre03.g185900 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3852.t2, g3852.t1,Cre03.g185900.t1.1 - - - - - - - - - Cre12.g531450 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g13079.t1,Cre12.g531450.t1.1 - - - - - - AT5G25265.1 - - Cre10.g453700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 13 - - g11137.t1 - - - - - - - - - Cre16.g675900 OAD1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 Arginine/ornithine decarboxylase Arginine/ornithine decarboxylase, most similar to bacterial decarboxylases; could carry out decarboxylation of Arg, the first step of the agmatine pathway for polyamine biosynthesis g16599.t1,Cre16.g675900.t1.1,OAD1 PF02784,PF00278 PTHR11482,PTHR11482:SF34 - - - GO:0003824 AT3G14390.1 - Pyridoxal-dependent decarboxylase family protein Cre11.g469000 FAP107 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g11774.t1,Cre11.g469000.t1.1 - - - - - - - - - Cre08.g358616 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g8400.t1 PF00481 PTHR13832,PTHR13832:SF117 KOG0698 - - GO:0003824 AT5G10740.1 - Protein phosphatase 2C family protein Cre06.g302200 EFH3 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 13 - - g6993.t1,EFH3 - - KOG0027 - - - - - - Cre12.g536150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g13185.t1 - - - - - - - - - Cre16.g669350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g16244.t1 PF00097 PTHR15860 - - - - AT5G01960.1 - RING/U-box superfamily protein Cre17.g700650 GFY2 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 - - g16990.t1,Cre17.g700650.t1.1,GFY2 PF01184 - - - K07034 GO:0016020 - - - Cre08.g358800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g8405.t1,Cre08.g358800.t1.1 PF00266 PTHR11601:SF13,PTHR11601 KOG1549 - - GO:0008152 AT5G26600.1 - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Cre10.g439026 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g10812.t1 - - - - - - - - - Cre13.g573750 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 11 - - g14105.t1,Cre13.g573750.t1.1 - - - - - - - - - Cre06.g257550 UCP2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - Uncoupling protein Uncoupling protein, probably mitochondrial g5789.t1,Cre06.g257550.t1.1 PF00153 PTHR24089:SF151,PTHR24089 KOG0753 - - - AT4G03115.1 - Mitochondrial substrate carrier family protein Cre09.g417176 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g10327.t1 - - - - - - - - - Cre12.g518772 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 - - g12790.t1,Cre12.g518772.t1.1 PF00076 PTHR24011,PTHR24011:SF285 KOG0148 - - GO:0003676 AT3G61860.1 ATRSP31,RSP31 RNA-binding (RRM/RBD/RNP motifs) family protein Cre03.g179200 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 18 - - g3709.t1,Cre03.g179200.t1.1 - - - - - - - - - Cre10.g426500 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g10538.t1,Cre10.g426500.t1.1 - - - - - - - - - Cre16.g656000 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - - - g15857.t1,Cre16.g656000.t1.1 - - - - - - - - - Cre01.g004200 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g104.t1,Cre01.g004200.t1.1 - - - - - - - - - Cre02.g115300 AOT6 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 10 Amino acid transporter Belongs to AAAP family of amino acid/auxin permeases; most similar to animal relatives; contains a large C-terminal domain of unknown function g2383.t1,AOT6 PF01490 PTHR22950,PTHR22950:SF11 KOG1305 - - - AT5G38820.1 - Transmembrane amino acid transporter family protein Cre02.g141546 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2719.t1 - - - - - - - - - Cre14.g625550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g15068.t1,Cre14.g625550.t1.1, g15068.t2 PF00560 PTHR18849 - - - GO:0005515 AT5G19680.1 - Leucine-rich repeat (LRR) family protein Cre01.g053360 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g1180.t1,Cre01.g053360.t1.1 - PTHR24106 KOG4308 - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre07.g313700 TSE2,GTS2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 Glutamyl/glutaminyl-tRNA synthetase Glutamyl/glutaminyl-tRNA synthetase. Previously annotated as GTS2 but renamed for tRNA synthetase series g7260.t1,GTS2,TSE2 PF00749 PTHR10119:SF1,PTHR10119 KOG1149 6.1.1.17 K01885 GO:0000166,GO:0005524,GO:0005737,GO:0006412,GO:0016876,GO:0043039 AT5G64050.1 ATERS,ERS,OVA3 glutamate tRNA synthetase Cre07.g337050 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g7842.t1,Cre07.g337050.t1.1 PF00097,PF04757 PTHR23350 KOG0317 - K13346 GO:0005778,GO:0007031 AT2G26350.1 ATPEX10,PEX10 peroxin 10 Cre16.g658150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g15902.t1,Cre16.g658150.t1.1 - - - - - - - - - Cre06.g252450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 - - g5652.t1 PF01926,PF02824 PTHR11702:SF8,PTHR11702 KOG1487 - - GO:0005525,GO:0005622 AT4G39520.1 - GTP-binding protein-related Cre16.g659200 CYP36,CYP742A1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 6 Cytochrome P450, CYP4 superfamily Cytochrome P450, CYP4 superfamily, CYP4A family. Previously annotated as CYP742A1 g15925.t1,CYP36 PF00067 PTHR24301 KOG0156 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT4G15110.1 CYP97B3 cytochrome P450, family 97, subfamily B, polypeptide 3 Cre16.g678850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g16536.t1 PF01154,PF08540 PTHR11877,PTHR11877:SF10 KOG1393 2.3.3.10 K01641 GO:0004421,GO:0008299 AT4G11820.2 EMB2778,FKP1,HMGS,MVA1 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase Cre17.g714700 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g17304.t1 - - KOG0963 - - - - - - Cre03.g166600 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g3419.t1 - PTHR13366 - - - - AT4G38120.1 - ARM repeat superfamily protein Cre17.g727650 ATM2 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 2 Half-size ABC transporter, membrane protein Half-size ABC transporter, related to mitochondrial proteins: A. thaliana ATM3, human ABC7, yeast ATM1, PMID: 15710683 g17591.t1,ATM2 PF00664,PF00005 PTHR24221,PTHR24221:SF68 KOG0057 - K05663 GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT5G58270.1 ATATM3,ATM3,STA1 ABC transporter of the mitochondrion 3 Cre12.g485400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g12045.t1 - - - - - - - - - Cre12.g527700 CYG19 - 0 12 1.0 1.0 0 12 1.0 1.0 SP n - 11 Adenylate/guanylate cyclase Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g12998.t1 PF00211 PTHR11920:SF129,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre07.g355500 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 15 - - g8267.t1 PF03226 PTHR13847:SF40,PTHR13847 KOG3399 - - - AT5G53940.1 - Yippee family putative zinc-binding protein Cre08.g362300 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g8485.t1 - - - - - - - - - Cre10.g421576 - 0 1 1.0 nan 0 1 1.0 nan - n - 17 - - g10432.t1 - - - - - - - - - Cre02.g092050 MITC6 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Mitochondrial substrate carrier protein Mitochondrial substrate carrier protein. Previously annotated as MITC6 g1724.t1,MITC6 PF00153 PTHR24089:SF94,PTHR24089 KOG0752 - - - AT5G15640.1 - Mitochondrial substrate carrier family protein Cre03.g173050 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g3568.t1,Cre03.g173050.t1.1 - - - - - - - - - Cre13.g601519 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g14536.t1 PF00078 PTHR19446 - - - GO:0003723,GO:0003964,GO:0006278 - - - Cre03.g144464 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g2887.t1,Cre01.g057307.t1.1,Cre01.g057307.t1.2 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre10.g460600 CYN53 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 8 Peptidyl-prolyl cis-trans isomerase, cyclophilin type Peptidyl-prolyl cis-trans isomerase (rotamase) with two cyclophilin domains [PMID: 15051864, PMID:15047905]; 2 cyclophilin domains in tandem; contains N-terminal domain of unknown function, shared with CYN51; most similar to cytosolic and nuclear isoforms g11292.t1 PF00160 PTHR11071,PTHR11071:SF100 KOG0879 - - GO:0003755,GO:0006457 AT3G63400.1 - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Cre01.g034300 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g773.t1,Cre01.g034300.t1.1 - - - - - - - - - Cre13.g603600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g14553.t1 PF00069 PTHR23257,PTHR23257:SF309 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT4G31170.1 - Protein kinase superfamily protein Cre13.g580950 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g14269.t1 PF05686 PTHR12203 - - - - - - - Cre04.g220700 ALK2 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Aurora-like kinase Possible role in mitotic regulation. Note that the ALK1 model (originally called CALK) and several other kinase models in the genome are much weaker hits to the aurora family. g4815.t1,Cre04.g220700.t1.1,ALK2 PF00069 PTHR24350 KOG0580 2.7.11.1 K08850 GO:0004672,GO:0005524,GO:0006468 AT2G25880.1 AtAUR2,AUR2 ataurora2 Cre17.g697500 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 - - g16915.t1 PF05517 PTHR12932,PTHR12932:SF9 KOG0027 - - - - - - Cre16.g651850 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 11 - - g15766.t1 PF12359,PF12340 - - - - - - - - Cre17.g713700 IAD2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 18 - - g17282.t1,IAD2 PF01231 PTHR15058 - - - GO:0020037 - - - Cre01.g035650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g803.t1,Cre01.g035650.t1.1 - - - - - - - - - Cre17.g742200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g17951.t1 PF00415 PTHR22870:SF18,PTHR22870 KOG1427 - - - AT1G19880.1 - Regulator of chromosome condensation (RCC1) family protein Cre11.g480451 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 11 - - g11927.t1 PF12499 - - - - - AT2G10940.1 - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Cre02.g142226 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g2759.t1,Cre15.g646050.t1.1 PF00069,PF07714 PTHR23257:SF359,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre14.g631350 VSP7 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 Hydroxyproline-rich glycoprotein, presumed cell wall component Hydroxyproline-rich glycoprotein containing (SP)n repeats; resembles VSP4/6; presumed cell wall protein but function unknown. g15216.t1,VSP7 - - - - - - - - - Cre08.g364151 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g8527.t1 - - - - - - - - - Cre11.g479600 - 0 13 1.0 1.0 0 13 1.0 1.0 SP n - 17 - - g11906.t2, g11906.t1 PF01699,PF03160 PTHR11878 KOG1306 - K05849 GO:0016021,GO:0055085,GO:0007154 AT2G47600.1 ATMHX,ATMHX1,MHX,MHX1 magnesium/proton exchanger Cre09.g405350 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g10052.t1, g10052.t2,Cre09.g405350.t1.1 - - - - - - - - - Cre16.g684300 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g16412.t1,Cre16.g684300.t1.1 PF02325 - - - - GO:0016020 AT4G27990.1 ATYLMG1-2,YLMG1-2 YGGT family protein Cre17.g700133 WNK1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g16980.t1,WNK1 PF00069 PTHR24349:SF118,PTHR24349 KOG0598 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre09.g401441 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g9991.t1,Cre02.g139112.t1.1,Cre02.g139112.t1.2 - - - - - - - - - Cre10.g424900 PHX13 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g10503.t1,Cre10.g424900.t1.1,PHX13 PF03171 PTHR10869 KOG1591 1.14.11.2 K00472 GO:0016491 AT4G33910.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre16.g657000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g15878.t1,Cre16.g657000.t1.1 PF03540 PTHR21242 - - K03134 GO:0003702,GO:0005634,GO:0006352 AT4G31720.1 STG1,TAF10,TAFII15 TBP-associated factor II 15 Cre16.g670501 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g16220.t1,Cre16.g670450.t1.2 - - - - - - - - - Cre16.g652150 FBP4 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 18 Fructose-2,6-bisphosphate 2-phosphatase/6-phosphofructo-2-kinase - g15773.t1,Cre16.g652150.t1.1 PF01591,PF00300 PTHR10606,PTHR10606:SF23 KOG0234 2.7.1.105,3.1.3.46 K01103 GO:0003873,GO:0005524,GO:0006000,GO:0003824,GO:0006003 AT1G07110.1 ATF2KP,F2KP,FKFBP fructose-2,6-bisphosphatase Cre16.g683350 TEH6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g16435.t1,Cre16.g683350.t1.1,TEH6 - PTHR12655 KOG2763 - - - AT2G30720.1 - Thioesterase/thiol ester dehydrase-isomerase superfamily protein Cre16.g675750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g16602.t1 PF00069,PF07714 PTHR23257:SF351,PTHR23257 KOG0591 - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre16.g687652 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g16336.t1 - - - - - - - - - Cre16.g687650 ANK20 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g16335.t1,ANK20 - - KOG4214 - - - AT2G03430.1 - Ankyrin repeat family protein Cre01.g049100 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g1089.t1 - - - - - - AT3G14590.1 NTMC2T6.2,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein Cre03.g171751 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 16 - - g3540.t1 PF00571,PF01595 PTHR12064 - - - GO:0005515 AT4G14240.1 - CBS domain-containing protein with a domain of unknown function (DUF21) Cre09.g389319 - 0 5 1.0 1.0 0 5 1.0 1.0 M n upregulated 3 - - g9638.t1,Cre02.g124300.t1.1,Cre02.g124300.t1.2 PF04117 PTHR11266 KOG1944 - - GO:0016021 AT3G24570.1 - Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Cre07.g318750 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g7368.t1,Cre07.g318750.t1.1 PF02769,PF00586 PTHR10520 - 6.3.3.1 K01933 GO:0003824 AT3G55010.1 ATPURM,PUR5 phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Cre16.g671450 FAO12 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g16290.t1,Cre16.g671450.t1.1,FAO12 PF01266 PTHR13847:SF10,PTHR13847 KOG2852 - - GO:0016491 AT5G67290.1 - FAD-dependent oxidoreductase family protein Cre02.g087600 SRH2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 - - g1627.t1,SRH2 PF00176,PF00271 PTHR10799,PTHR10799:SF92 - 3.6.4.12 K14439 GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT2G02090.1 CHA19,CHR19,ETL1 SNF2 domain-containing protein / helicase domain-containing protein Cre08.g384850 SDR16 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g9056.t1,SDR16 PF00106 PTHR24310,PTHR24310:SF66 KOG0725 - - GO:0008152,GO:0016491 AT2G29290.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre05.g240000 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 12 - - g5535.t1,Cre05.g240000.t1.1 PF01569 PTHR10165:SF35,PTHR10165 KOG3030 - - GO:0003824,GO:0016020 AT3G02600.2 ATLPP3,LPP3 lipid phosphate phosphatase 3 Cre02.g080050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g1462.t1,Cre02.g080050.t1.1 PF00645 - - - - GO:0003677,GO:0008270 - - - Cre13.g606950 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 14 - - g14633.t1 - - - - - - - - - Cre01.g003800 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 16 - - g95.t1 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G06620.1 - PAS domain-containing protein tyrosine kinase family protein Cre02.g144100 ELG12 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 7 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g2591.t1,Cre02.g144100.t1.1,ELG12 PF03016 PTHR11062,PTHR11062:SF19 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre10.g417550 CLPS3,CLPT3 - 0 1 1.0 nan 0 1 1.0 nan C n - - ClpS-like protein Possibly a ClpS homologue (sensu viridiplantae); has similarity to N-terminal domain of bacterial HSP100 chaperones; associated with ClpP complex; chloroplastic (TargetP score 0.894) g10337.t1,CLPS3 - PTHR11638:SF83,PTHR11638 - - - - - - - Cre01.g026100 XRP14 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 Ribonuclease P-related Essential for tRNA processing generating 5\'-termini of mature tRNA molecules; homologous to human RPP14 subunit (PubMed: 10024167) g600.t1,Cre01.g026100.t1.1, g600.t2 PF01900 PTHR10993,PTHR10993:SF1 KOG4639 3.1.26.5 K03537 GO:0004540,GO:0008033 AT1G04635.1 EMB1687 ribonuclease P family protein / Rpp14 family protein Cre16.g668450 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g16269.t1 - - - - - - - - - Cre02.g100150 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 - - g2039.t1,Cre02.g100150.t1.1 - - - - - - - - - Cre02.g141550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated - - - g2659.t1,Cre02.g141550.t1.1 PF02190 - - - - GO:0004176,GO:0006508 AT1G19740.1 - ATP-dependent protease La (LON) domain protein Cre16.g656851 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g15875.t1,Cre16.g656850.t1.3 - PTHR12210:SF19,PTHR12210 - - - - - - - Cre03.g193900 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 High mobility group protein, histone-like transcription factor High mobility group protein, histone-like transcription factor. Has homology to DNA polymerase epsilon subunit g4013.t1,Cre03.g193900.t1.1 PF00505,PF00808 PTHR10252 KOG0381 - - GO:0003677,GO:0005622,GO:0043565 - - - Cre12.g517650 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g12764.t1 - - - - - - - - - Cre03.g193300 CPLD56 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 14 - - g3999.t1,Cre03.g193300.t1.1 - PTHR18901 KOG2914 - - - AT4G11570.1 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre09.g416050 AGS1 - 0 1 1.0 nan 0 1 1.0 nan C n - 5 Argininosuccinate synthase Argininosuccinate synthase (EC 6.3.4.5); similar to prokaryotic argininosuccinate synthases, such as that from Magnetococcus (GenBank EAN29055); Target-P predicts organelle (weakly mitochondrial) targeting. This corresponds to the C. reinhardtii ARG8 locu g10298.t1,Cre09.g416050.t1.1,AGS1 PF00764 PTHR11587 KOG1706 - - GO:0004055,GO:0005524,GO:0006526 AT4G24830.1 - arginosuccinate synthase family Cre11.g467555 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 13 - - g11484.t1,Cre44.g788200.t1.1,Cre44.g788200.t1.2 PF00023 PTHR24198:SF302,PTHR24198 - - - GO:0005515 AT5G02620.1 ANK1,ATANK1 ankyrin-like1 Cre01.g005750 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 16 - - g139.t1 - PTHR10913,PTHR10913:SF5 - - - - - - - Cre12.g533300 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 15 - - g13119.t1,Cre12.g533300.t1.1 PF00076 - KOG3910 - - GO:0003676 AT2G33410.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre11.g467554 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g11483.t1,Cre44.g788250.t1.1 PF01694 - - - - GO:0004252,GO:0016021 - - - Cre02.g088200 RB60 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 Protein disulfide isomerase 1 Protein disulfide isomerase 1 (CrPDI1 [PMID: 16143836]. Located in the chloroplast and the endoplasmic reticulum. The Rb60 protein is part of a complex involved in the control of psbA mRNA translation by light [PMID: 1721866, PMID: 7798310, PMID: 8668172, g1642.t1,Cre02.g088200.t1.1 PF00085 PTHR18929,PTHR18929:SF32 KOG0190 5.3.4.1 K09580 GO:0045454 AT5G60640.1 ATPDI2,ATPDIL1-4,PDI2,PDIL1-4 PDI-like 1-4 Cre16.g691753 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g15645.t1 - - - - - - - - - Cre17.g699100 TGL20 - 0 5 1.0 1.0 0 5 1.0 1.0 M n downregulated 17 - - g16956.t1,TGL20 PF01734,PF11815 PTHR11711,PTHR11711:SF1 KOG2214 2.3.1.51,3.1.1.13,3.1.1.3,3.1.1.4 K14674 GO:0006629,GO:0005525 AT5G04040.1 SDP1 Patatin-like phospholipase family protein Cre17.g718450 MMP2 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 Matrix metalloproteinase Matrix Metalloprotease 2; Expressed in young zygotes [GI:15718393, PMID: 11680823]. Matrix metalloproteinase belonging to the M11 peptidase family g17387.t1,MMP2 - - - - - - - - - Cre03.g166850 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 8 - - g3424.t1 - PTHR10887:SF104,PTHR10887 KOG4726 - - - AT2G38770.1 EMB2765 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre01.g015103 - 0 16 1.0 1.0 0 16 1.0 1.0 SP n - 17 - - g365.t1,Cre01.g015103.t1.1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre09.g387750 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 13 - - g9549.t1 - - - - - - - - - Cre16.g682550 - 0 24 1.0 1.0 0 24 1.0 1.0 C n - 11 - - g16451.t3, g16451.t2, g16451.t1 PF00652,PF08016, PF00652,PF00560,PF08016 PTHR24420,PTHR24420:SF940, PTHR24420:SF492,PTHR24420 - - - GO:0005515 AT5G12940.1, AT4G20140.1 GSO1 Leucine-rich repeat transmembrane protein kinase, Leucine-rich repeat (LRR) family protein Cre03.g213649 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 2 - - g4491.t1,Cre19.g757400.t1.1 PF00271 PTHR24031 - - - GO:0003676,GO:0004386,GO:0005524 AT5G19210.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre02.g082950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g1524.t1 PF03407 PTHR24633:SF6,PTHR24633 - - - - - - - Cre09.g388949 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g9628.t1,Cre02.g123850.t1.1,Cre02.g123850.t1.2 PF01753 PTHR13244 - - - GO:0008270 AT2G17900.1 SDG37 SET domain group 37 Cre14.g632100 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 - - g15233.t1 PF07707 PTHR24412:SF248,PTHR24412 - - - - - - - Cre12.g490050 GMT1,TPT18 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 Triose phosphate transporter Triose phosphate transporter. Previously annotated as GMT1 g12184.t1,Cre12.g490050.t1.1,GMT1,TPT18 PF03151 PTHR11132 KOG1444 - - - AT2G13650.1 GONST1 golgi nucleotide sugar transporter 1 Cre08.g383850 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 - - g9035.t2, g9035.t1 - - - - - - - - - Cre13.g578200 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14203.t1, g14203.t2 - - - - - - - - - Cre02.g092200 QAD1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - Quinonprotein alcohol dehydrogenase-like protein Quinonprotein alcohol dehydrogenase-like g1728.t1,Cre02.g092200.t1.1,QAD1 - - - - - - - - - Cre12.g551200 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 9 - - g13521.t1,Cre12.g551200.t1.1 PF00686 - - - - GO:0003824,GO:0005975 AT5G01260.1 - Carbohydrate-binding-like fold Cre12.g551201 NAT28 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g13522.t1,NAT28 PF00583 - - - - GO:0008080,GO:0008152 - - - Cre03.g206500 - 0 15 1.0 1.0 0 15 1.0 1.0 SP n - - - - g4181.t1 - - - - - - - - - Cre09.g397956 FAP201 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 8 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g9878.t1,Cre02.g135000.t1.1,FAP201 PF03016,PF07974 PTHR11062,PTHR11062:SF12 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre12.g510200 BLZ9 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g12346.t1,Cre12.g510200.t1.1,BLZ9 PF00170 - - - - GO:0003700,GO:0006355,GO:0043565,GO:0046983 AT5G11260.1 HY5,TED 5 Basic-leucine zipper (bZIP) transcription factor family protein Cre16.g658526 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g15909.t1 PF01926,PF00005 PTHR24220:SF52,PTHR24220 - - K02065 GO:0005525,GO:0005622,GO:0005524,GO:0016887 AT1G65410.1 ATNAP11,NAP11,TGD3 non-intrinsic ABC protein 11 Cre07.g316650 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 16 - - g7321.t1 PF00069,PF07714,PF03924 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre12.g502150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g12530.t1,Cre12.g502150.t1.1 - - - - - - - - - Cre35.g759447 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g18362.t1,Cre66.g793600.t1.1 - - - - - - - - - Cre07.g329150 SPL21,SPLH1 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 15 DEAH-box helicase, possible nuclear pre-mRNA splicing factor DEAH-box helicase, possible nuclear pre-mRNA splicing factor. Homologue of S. cerevisiae mRNA splicing helicases Prp2, Prp16, Prp22 and Prp43 which are required at different steps of the spliceosome cycle. Previously annotated as SPLH1 g7654.t1,Cre07.g329150.t1.1,SPL21,SPLH1, g7654.t2,SPL21,SPLH1 PF00271,PF07717,PF00270,PF04408 PTHR18934 KOG0922 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT5G13010.1 EMB3011 RNA helicase family protein Cre04.g223650 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 10 - - g4881.t1 PF02494 - - - - - - - - Cre08.g369650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g8660.t1 - - - - - - - - - Cre16.g694750 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g15576.t1,Cre16.g694750.t1.1 PF05686 PTHR12203 - - - - AT3G61270.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre08.g368300 HEL43 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 - - g8632.t1,HEL43 PF00271,PF04851 PTHR14074 - 3.6.3.14 K12649 GO:0003676,GO:0004386,GO:0005524,GO:0003677,GO:0016787 AT1G01040.2 ASU1,ATDCL1,CAF,DCL1,EMB60,EMB76,SIN1,SUS1 dicer-like 1 Cre07.g327687 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g7622.t1,Cre07.g327687.t1.1 PF06080 PTHR20974 - - - - - - - Cre16.g695400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g15560.t1 PF09733 - - - - - - - - Cre12.g489800 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - - - g12189.t1,Cre12.g489800.t1.1, g12189.t2 PF00887 PTHR23310,PTHR23310:SF39, PTHR23310:SF39,PTHR23310 - - - GO:0000062 - - - Cre16.g674500 - 0 12 1.0 1.0 0 12 1.0 1.0 C n - 7 - - g16630.t1,Cre16.g674500.t1.1 PF00005 PTHR19229,PTHR19229:SF66 - - - GO:0005524,GO:0016887 AT3G47730.1 ABCA2,ATATH1,ATH1 ATP-binding cassette A2 Cre16.g648350 PDY2 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 16 - - g15692.t1,PDY2 PF01619 PTHR13914 KOG0186 - - GO:0004657,GO:0006537,GO:0006562,GO:0055114 AT5G38710.1 - Methylenetetrahydrofolate reductase family protein Cre17.g735350 FAP164 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. Possible phospholipase A2 or serine endopeptidase activity g17789.t1 PF00023 PTHR24198:SF302,PTHR24198 KOG4412 - - GO:0005515 AT3G04710.3 - ankyrin repeat family protein Cre12.g550550 CYG48 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 17 Adenylate/guanylate cyclase Similar to guanylate cyclase 1, soluble, beta 2 [Homo sapiens] g13534.t1 PF00211 PTHR11920:SF123,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre12.g550553 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g13535.t1 - - - - - - - - - Cre01.g016450 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 7 - - g390.t1 PF00856 PTHR12197:SF79,PTHR12197 - - K11426 GO:0005515 AT2G17900.1 SDG37 SET domain group 37 Cre06.g261400 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 12 - - g5875.t1 - - KOG0978 - - - AT1G05320.1 - - Cre03.g144584 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 13 - - g2893.t1,Cre60.g792050.t1.1 - - - - - - - - - Cre03.g198100 BET1 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 ER-to-Golgi Qc-SNARE protein, Bet1/mBET1 family (Qc.II) ER-to-Golgi Qc-SNARE protein, Bet1/mBET1 family (Qc.II). Expressed Protein. Class Qc.II SNARE, involved in ER-to-Golgi/intra-Golgi trafficking (PMID: 17596510). Previously annotated as BET1 g4103.t1,Cre03.g198100.t1.1,BET1 - PTHR12791:SF5,PTHR12791 KOG3385 - - - AT3G58170.1 ATBET11,ATBS14A,BET11,BS14A BET1P/SFT1P-like protein 14A Cre09.g413700 TPT13 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g10248.t1,TPT13 PF03151 PTHR11132 KOG1441 - - - AT1G53660.1 - nodulin MtN21 /EamA-like transporter family protein Cre05.g238260 - 0 13 1.0 1.0 0 13 1.0 1.0 C n downregulated 15 - - g5485.t1 PF07719 PTHR23083 - - - - - - - Cre16.g678997 - 0 1 1.0 nan 0 1 1.0 nan C n - 13 - - g16764.t1,Cre01.g067600.t1.1, g16764.t2,Cre01.g067600.t2.1 - - - - - - - - - Cre10.g446050 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g10975.t1 PF01697 - - - - - AT3G27330.1 - zinc finger (C3HC4-type RING finger) family protein Cre01.g019300 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 17 - - g452.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre10.g436950 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 - - g10769.t1,Cre10.g436950.t1.1 PF07534 PTHR23354,PTHR23354:SF35 KOG2372 - - - AT5G06260.1 - TLD-domain containing nucleolar protein Cre06.g268550 GTR,CGL121 - 0 9 1.0 1.0 0 9 1.0 1.0 SP Y - 13 - - g6025.t1,GTR, g6025.t2,GTR PF00535 PTHR10587:SF36,PTHR10587 - 2.4.1.32 K13680 - AT3G07330.1 ATCSLC06,ATCSLC6,CSLC06,CSLC6 Cellulose-synthase-like C6 Cre13.g579550 CGL27 - 0 3 1.0 1.0 0 3 1.0 1.0 C Y - 4 Predicted protein Conserved expressed protein of unknown function; some similarity to protein of unknown function in Arabidopsis g14237.t1 - - - - - - AT1G62780.1 - - Cre01.g011150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g279.t1 PF00010 - - - - GO:0006355,GO:0030528 - - - Cre11.g467599 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - - - - g11529.t1,Cre18.g748500.t1.1,Cre18.g748500.t1.2 PF00168 PTHR10774 KOG1030 - - GO:0005515 AT4G34150.1 - Calcium-dependent lipid-binding (CaLB domain) family protein Cre11.g467598 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g11528.t1,Cre18.g748550.t1.1 - - - - - - - - - Cre01.g031550 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g713.t1 PF07282,PF00149 PTHR23257,PTHR23257:SF99 KOG0371 - - GO:0016787 - - - Cre11.g467593 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 7 - - g11523.t1,Cre18.g748800.t1.1,Cre18.g748800.t1.2 PF00168 PTHR10774 KOG1030 - - GO:0005515 AT4G34150.1 - Calcium-dependent lipid-binding (CaLB domain) family protein Cre09.g396600 HYDA2 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 14 Iron hydrogenase Chloroplast Fe-hydrogenase (= HYDA2); corresponds to GI:18026272 [PMID: 12823545] g9355.t1 PF02256,PF02906 PTHR11615:SF6,PTHR11615 KOG2439 - - - AT4G16440.1 - ferredoxin hydrogenases Cre11.g467594 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated - - - g11524.t1,Cre18.g748750.t1.1,Cre18.g748750.t1.2 PF00168 PTHR10774 KOG1030 - - GO:0005515 AT4G34150.1 - Calcium-dependent lipid-binding (CaLB domain) family protein Cre17.g700300 CGL22 - 0 1 1.0 nan 0 1 1.0 nan O n - - Putative microtubule-severing ATPase - g16984.t1 PF00004 PTHR23077,PTHR23077:SF43 KOG0733 - - GO:0005524 AT2G03670.1 CDC48B cell division cycle 48B Cre01.g033300 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated 14 - - g752.t2,Cre01.g033300.t1.1, g752.t1 - - - - - - AT3G62730.1 - - Cre03.g145987 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g2964.t1,Cre01.g060500.t1.1 - - - - - - - - - Cre08.g380763 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g8960.t1,Cre08.g380763.t1.1, g8960.t2 - - - - - - - - - Cre02.g075800 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g1358.t1,Cre02.g075800.t1.1 - - - - - - - - - Cre01.g006050 LF3 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 Long-flagella mutant LF3 protein LF3 is involved in controlling flagellar length. Null mutants (ulf1 and ulf3) have unequal length flagella; hypomorphic alleles have long flagella. gi:37778331 g145.t1,LF3 - - - - - - - - - Cre09.g394600 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9398.t1,Cre09.g394600.t1.1 - - - - - - - - - Cre01.g020223 FUM2 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - - - g470.t1 PF10415,PF00206 PTHR11444:SF1,PTHR11444 KOG1317 4.2.1.2 K01679 GO:0006099,GO:0016829 AT5G50950.2 FUM2 FUMARASE 2 Cre03.g202500 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g4270.t1,Cre03.g202500.t1.1 PF04836,PF05004 PTHR12354:SF8,PTHR12354 KOG2842 - - - AT1G27760.3 ATSAT32,SAT32 interferon-related developmental regulator family protein / IFRD protein family Cre03.g159254 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g3261.t2, g3261.t1,Cre03.g159254.t1.1 PF00909 PTHR11730:SF8,PTHR11730 KOG0682 - - GO:0008519,GO:0016020,GO:0072488 AT4G13510.1 AMT1;1,ATAMT1,ATAMT1;1 ammonium transporter 1;1 Cre07.g323300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g7468.t1 - - - - - - - - - Cre01.g028050 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g641.t1,Cre01.g028050.t1.1 - - - - - - - - - Cre16.g693800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g15602.t1 PF01529 PTHR22883 - - - GO:0008270 AT3G18620.1 - DHHC-type zinc finger family protein Cre08.g361300 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g8460.t1 PF03567 - - - - GO:0008146,GO:0016021 - - - Cre12.g556250 SEP1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 7 Septin-like protein Homolog of septin molecules used in cytokinesis g13407.t1,Cre12.g556250.t1.1,SEP1 PF00735 PTHR18884,PTHR18884:SF30 KOG2655 - - GO:0005525,GO:0007049 - - - Cre17.g725000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 16 - - g17533.t1 - - - - - - - - - Cre04.g213251 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated 2 - - g4713.t1 - PTHR11533:SF8,PTHR11533 - - - GO:0008270,GO:0006508 AT1G63770.5 - Peptidase M1 family protein Cre04.g213250 - 0 10 1.0 1.0 0 10 1.0 1.0 O n upregulated 5 - - g4712.t1,Cre04.g213250.t1.1 PF11940 PTHR24924,PTHR24924:SF8 - - - - AT1G63770.5 - Peptidase M1 family protein Cre06.g298500 - 0 7 1.0 1.0 0 7 1.0 1.0 O n downregulated 15 - - g6905.t1 - - - - - - - - - Cre14.g614950 MRPS2 - 0 1 1.0 nan 0 1 1.0 nan SP n - - Putative mitochondrial ribosomal protein S2, imported to mitochondria Putative mitochondrial ribosomal protein S2 g14816.t1,Cre14.g614950.t1.1,MRPS2 PF01391,PF00318 - KOG0830 - - GO:0003735,GO:0005622,GO:0005840,GO:0006412 - - - Cre10.g448200 ARL9 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 16 - - g11021.t1,ARL9 PF00025 PTHR11711 KOG0070 - - GO:0005525 AT5G14670.1 ARFA1B,ATARFA1B ADP-ribosylation factor A1B Cre10.g451350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 16 - - g11091.t1 - - - - - - AT5G19080.1 - RING/U-box superfamily protein Cre19.g750847 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 - - g18135.t1,Cre33.g782550.t3.1, g18135.t3,Cre33.g782550.t2.1, g18135.t2,Cre33.g782550.t1.1,Cre33.g782550.t1.2 PF01145 PTHR10264,PTHR10264:SF26 KOG2620 - - GO:0016020 AT5G54100.1 - SPFH/Band 7/PHB domain-containing membrane-associated protein family Cre16.g660900 KIL10 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 13 - - g15961.t1,Cre16.g660900.t1.1,KIL10 PF00225 PTHR24115:SF235,PTHR24115 KOG4280 - - GO:0003777,GO:0005524,GO:0007018 AT2G28620.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre17.g706150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g17114.t1 - - - - - - - - - Cre08.g359500 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g8420.t1 PF07478,PF00856 PTHR23132 - - - GO:0008716,GO:0005515 AT1G77300.2 ASHH2,CCR1,EFS,SDG8 histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) Cre06.g310650 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g7189.t1,Cre06.g310650.t1.1 - - - - - - - - - Cre02.g114000 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g2353.t1 - - - - - - - - - Cre02.g114001 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g2354.t1,Cre02.g114001.t1.1 - - - - - - - - - Cre01.g039550 PLAP1,PLP1 - 0 8 1.0 1.0 0 8 1.0 1.0 C n upregulated 8 Plastid lipid associated protein Conserved expressed protein; Arabidopsis homologue is in plastoglobuli (PMID: 16461379). Previously annotated as PLAP1 g883.t1,PLP1 PF04755 - - - - GO:0005198,GO:0009507 AT2G46910.1 - Plastid-lipid associated protein PAP / fibrillin family protein Cre07.g335150 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g7803.t1 PF03110 - - - - GO:0003677,GO:0005634 AT1G53160.1 SPL4 squamosa promoter binding protein-like 4 Cre12.g557700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g13376.t1,Cre12.g557700.t1.1 PF00753 PTHR11935,PTHR11935:SF7 KOG0813 - - GO:0016787 AT1G06130.1 GLX2-4 glyoxalase 2-4 Cre03.g146187 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 N-acetyl-gamma-glutamyl-phosphate reductase Third step of ornithine biosynthesis pathway; NAGPR, N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor; ARGC1 (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase). Previously annotated as ARG1 on the assumption th g2974.t1,Cre01.g060950.t1.1,Cre01.g060950.t1.2 PF01118,PF02774 PTHR14097,PTHR14097:SF7 KOG4354 1.2.1.-,1.2.1.38 K00145 GO:0005737,GO:0006520,GO:0016620,GO:0051287,GO:0008652,GO:0046983 AT2G19940.1 - oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding Cre12.g528550 SRD1 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g13015.t1,SRD1 PF02544 PTHR10556,PTHR10556:SF2 KOG1638 1.3.99.5 K12343 GO:0005737,GO:0006629,GO:0016021,GO:0016627 AT2G38050.1 ATDET2,DET2,DWF6 3-oxo-5-alpha-steroid 4-dehydrogenase family protein Cre01.g023750 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 8 - - g546.t1 - - - - - - - - - Cre02.g144350 RJL1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Small Rab-related GTPase Expressed Protein. Rab-type GTPase distantly related to RabJ-like proteins in mammals and protists.; Member of the RJL family in the Ras superfamily of GTPases [PMID: 14980719]. Cellular function unknown at present. Previously annotated as RJL1 g2586.t1,Cre02.g144350.t1.1,RJL1, g2586.t2,RJL1 PF00071 PTHR24073,PTHR24073:SF139 KOG0098 - - - AT4G17160.1 ATRAB2B,ATRABB1A,RABB1a RAB GTPase homolog B1A Cre03.g204212 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 - - g4231.t1,Cre03.g204212.t1.1 - - - - - - - - - Cre07.g325300 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 6 - - g7514.t1 - - - - - - - - - Cre07.g354200 GAP2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 Glyceraldehyde 3-phosphate dehydrogenase Glyceraldehyde 3-phosphate dehydrogenase (EC 1.2.1.12 or 1.2.1.13); probably cytosolic (lacks N-terminal extension); greatest similarity to cyanobacterial and bacterial glyceraldehyde 3-phosphate dehydrogenase g8240.t1,Cre07.g354200.t1.1 PF00044,PF02800 PTHR10836 KOG0657 - - GO:0016620,GO:0055114 AT1G79530.1 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 Cre16.g649833 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g15724.t1, g15724.t2 PF00097 PTHR14155 - - - - AT5G24870.1 - RING/U-box superfamily protein Cre12.g551700 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g13509.t1,Cre12.g551700.t1.1 - - - - - - - - - Cre03.g180200 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g3735.t1,Cre03.g180200.t1.1 PF00400 PTHR22847:SF1,PTHR22847 KOG0649 - - - AT2G19430.1 AtTHO6,DWA1,THO6 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 Cre01.g052850 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g1169.t1 PF00069 PTHR24055,PTHR24055:SF170 KOG0594 - - GO:0004672,GO:0005524,GO:0006468 AT3G14720.1 ATMPK19,MPK19 MAP kinase 19 Cre01.g024250 HEL4 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g560.t1,HEL4 - - - - - - - - - Cre01.g024251 - 0 12 1.0 1.0 0 12 1.0 1.0 C n - 17 - - g561.t1,Cre01.g024251.t1.1 PF08482,PF00271,PF00270,PF04408 PTHR18934 KOG0922 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G32490.1 EMB2733,ESP3 RNA helicase family protein Cre07.g331700 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g7717.t1 - - - - - - - - - Cre06.g296750 HYDEF,HYDEF1 - 0 13 1.0 1.0 0 13 1.0 1.0 C n downregulated 13 Iron hydrogenase assembly protein; Iron hydrogenase assembly protein Iron hydrogenase assembly protein, contains domains homologous to prokaryotic HydE and HydF; radical SAM domain present in N-terminal region. [PMID: 15082711]; [PMID: 19117946] g6862.t1,Cre06.g296750.t1.1,HYDEF PF04055,PF01926 PTHR11649,PTHR11649:SF45 - - - GO:0003824,GO:0051536,GO:0005525,GO:0005622 - - - Cre01.g027500 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g628.t1 PF00622 - - - - GO:0005515 - - - Cre10.g453850 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g11145.t1,Cre10.g453850.t1.1 - - - - - - - - - Cre02.g119400 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 10 - - g2477.t1 - PTHR18063,PTHR18063:SF6 - - - - - - - Cre17.g722851 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g17487.t1,Cre17.g722850.t1.3 - - - - - - - - - Cre02.g115750 GPD9 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g2396.t1,GPD9 PF03009 PTHR23344 - - - GO:0006071,GO:0008889 AT1G71340.1 - PLC-like phosphodiesterases superfamily protein Cre10.g458750 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 7 - - g11253.t1,Cre10.g458750.t1.1, g11253.t2 - - - - - - - - - Cre07.g350926 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8165.t1 - - - - - - - - - Cre13.g571800 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g14061.t1 PF07059 - - - - - AT1G59650.1 CW14 Protein of unknown function (DUF1336) Cre14.g619650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g14931.t1,Cre14.g619650.t1.1 - - - - - - - - - Cre09.g413950 EFH6 - 0 10 1.0 1.0 0 10 1.0 1.0 M n - 15 - - g10253.t1,EFH6 - PTHR23050:SF88,PTHR23050 - - - - AT3G50360.1 ATCEN2,CEN1,CEN2 centrin2 Cre08.g358751 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 9 - - g8404.t1,Cre08.g358750.t1.3 - PTHR13244,PTHR13244:SF4 - - - - - - - Cre10.g446200 - 0 1 1.0 nan 0 1 1.0 nan SP n - 6 - - g10978.t1,Cre10.g446200.t1.1 PF11566 - - - - - - - - Cre06.g279474 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g6498.t1 - PTHR12271,PTHR12271:SF13 - - - - AT2G39740.1 - Nucleotidyltransferase family protein Cre06.g262601 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g5899.t1,Cre06.g262600.t1.3 PF07707 PTHR24412:SF248,PTHR24412 - - - - - - - Cre12.g527350 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g12991.t1,Cre12.g527350.t1.1 - - - - - - - - - Cre07.g313143 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 - - g7247.t1,Cre74.g795200.t1.1,Cre74.g795200.t1.2 - - - - - - - - - Cre08.g382530 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g9001.t1 - - - - - - - - - Cre07.g321150 CYG15 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 6 Adenylate/guanylate cyclase C terminal domain similar to guanylate cyclase 1 from Homo sapiens g7424.t1 PF07701,PF00211,PF07700 PTHR11920:SF145,PTHR11920 KOG4171 4.6.1.2 K12319 GO:0004383,GO:0006182,GO:0009190,GO:0016849,GO:0035556,GO:0020037 - - - Cre02.g100450 CYG20 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 16 Adenylate/guanylate cyclase Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens, possible acid phosphatase g2045.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre01.g022150 KCN3 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 Voltage-gated K+ channel Voltage-dependent 1-domain potassium channel (Shaker-like), alpha subunit; P-loop contains conserved motif for K+ selectivity g511.t1,KCN3 PF00520 PTHR11537,PTHR11537:SF97 - - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 - - - Cre09.g393400 VTE4 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 8 Tocopherol O-methyltransferase/gamma-tocopherol methyltransferase Tocopherol O-methyltransferase/gamma-tocopherol methyltransferase, chloroplast precursor (EC 2.1.1.95) (TMT) g9421.t1,Cre09.g393400.t1.1,VTE4 PF08241 PTHR10108,PTHR10108:SF217 KOG1269 2.1.1.95 K05928 GO:0008152,GO:0008168 AT1G64970.1 G-TMT,TMT1,VTE4 gamma-tocopherol methyltransferase Cre10.g465900 CDKA1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 Cyclin dependent protein kinase P34 cdc2/CDK1 ortholog; cyclin dependent kinase; orthologous to plant CDKA, animal CDK1; PSTAIRE motif. Putative function in G1/S and G2/M g11419.t1,Cre10.g465900.t1.1 PF00069 PTHR24056,PTHR24056:SF109 KOG0594 2.7.11.22 K02087 GO:0004672,GO:0005524,GO:0006468 AT3G48750.1 CDC2,CDC2A,CDC2AAT,CDK2,CDKA1,CDKA;1 cell division control 2 Cre01.g033150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g749.t1,Cre01.g033150.t1.1 - - - - - - AT1G70480.1 - Domain of unknown function (DUF220) Cre02.g112400 CHI1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g2315.t1,CHI1 PF00704 PTHR11177:SF45,PTHR11177 - 3.2.1.- K12310 GO:0004553,GO:0005975 - - - Cre10.g433200 XUV3,UAPA3,UAPA4 - 0 1 1.0 nan 0 1 1.0 nan O n - - Xanthine/uracil/vitamin C permease-like Xanthine/uracil/vitamin C permease-like. Two previous gene models UAPA3 and UAPA4 have been combined into this single gene model g10687.t1,Cre10.g433200.t1.1,UAPA3,UAPA4 PF00860 PTHR11119,PTHR11119:SF3 KOG1292 - - GO:0005215,GO:0006810,GO:0016020,GO:0055085 AT5G62890.1 - Xanthine/uracil permease family protein Cre10.g464050 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g11371.t1 - - - - - - - - - Cre07.g337700 PDC1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g7856.t1,PDC1 - - - - - - - - - Cre12.g522800 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g12875.t1,Cre12.g522800.t1.1 - - - - - - - - - Cre01.g042250 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 15 - - g947.t1 - - - - - - - - - Cre12.g511800 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g12313.t1 - - - - - - - - - Cre48.g761247 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g18403.t1 - - - - - - - - - Cre17.g710300 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 - - g17202.t1 PF12499 - - - - - - - - Cre17.g725851 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g17553.t1 - - - - - - - - - Cre01.g014300 HGC - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated 7 - - g348.t2,HGC, g348.t1,HGC - - - - - - - - - Cre01.g043250 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 14 - - g967.t1 - - - - - - - - - Cre06.g263950 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 15 - - g5931.t1 PF00689,PF00702,PF00690,PF00122 PTHR24093,PTHR24093:SF100 KOG0203 3.6.3.9 K01539 GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT1G10130.1 ATECA3,ECA3 endoplasmic reticulum-type calcium-transporting ATPase 3 Cre16.g662350 TPS2 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 13 - - g15994.t1,TPS2 PF02358,PF00982 PTHR10788 KOG1050 - - GO:0003824,GO:0005992 AT1G78580.1 ATTPS1,TPS1 trehalose-6-phosphate synthase Cre05.g237870 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g5473.t1,Cre05.g237900.t1.3 - - - - - - - - - Cre03.g168250 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g3460.t1 - - - - - - - - - Cre12.g508350 TPR2 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 6 - - g12387.t1,Cre12.g508350.t1.1 - PTHR26312:SF20,PTHR26312 - - - - AT3G05625.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre03.g164950 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g3381.t1 PF00076 PTHR15481 KOG0130 - K14325 GO:0003676 AT1G16610.3 RNPS1,SR45 arginine/serine-rich 45 Cre02.g113751 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 10 - - g2346.t1,Cre02.g113751.t1.1 - - - - - - - - - Cre02.g113750 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g2345.t1 - - - - - - - - - Cre03.g213313 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g4488.t1,Cre19.g757250.t1.1,Cre19.g757250.t1.2 PF00106 PTHR24322 KOG1200 - - GO:0008152,GO:0016491 AT1G24360.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre02.g113752 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g2347.t1,Cre02.g113752.t1.1 - - KOG1947 - - - AT2G25490.1 EBF1,FBL6 EIN3-binding F box protein 1 Cre12.g517750 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g12767.t1 PF00069 PTHR26266,PTHR26266:SF142 - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre11.g467450 SOM3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 - - g11728.t1,SOM3 PF04072 - - - - GO:0008168 - - - Cre15.g640800 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g15328.t1,Cre15.g640800.t1.1 - PTHR22929 - - - - AT4G39160.1 - Homeodomain-like superfamily protein Cre06.g297500 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g6881.t1 - - - - - - - - - Cre12.g495250 FAL15 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 14 Similar to Flagellar Associated Protein FAP31 Similar to conserved uncharacterized Flagellar Associated Protein FAP31 that is found in the flagellar proteome [PMID: 15998802]. Overlaps with FAP31 gene model in v4. Contains conserved with kinesin light chain region g12126.t1,FAL15 PF00515 PTHR19959:SF77,PTHR19959 - - - GO:0005515 AT3G27960.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre07.g339850 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 18 - - g7904.t2, g7904.t1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre07.g351200 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g8172.t1,Cre07.g351200.t1.1 - - - - - - AT5G64510.1 - - Cre03.g150600 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 18 - - g3063.t1,Cre03.g150600.t1.1 PF03109 PTHR10566 KOG1235 - K08869 - AT1G65950.1 - Protein kinase superfamily protein Cre06.g259150 EFG8 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 6 Mitochondrial translation factor Tu - g5826.t1,Cre06.g259150.t1.1 PF03144,PF03143,PF00009 PTHR23115,PTHR23115:SF31 KOG0460 3.6.5.3 K02358 GO:0005525,GO:0003924,GO:0003746,GO:0005622,GO:0006414 AT4G02930.1 - GTP binding Elongation factor Tu family protein Cre14.g629700 MME3 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 16 NADP malic enzyme Malic Enzyme, NADP-dependent; malate dehydrogenase, decarboxylating (EC 1.1.1.40); direct repeat with MME2; targeting uncertain, but predicted cytosolic by homology g15165.t1 PF00390,PF03949 PTHR23406:SF2,PTHR23406 KOG1257 1.1.1.40 K00029 GO:0016616,GO:0051287 AT5G25880.1 ATNADP-ME3,NADP-ME3 NADP-malic enzyme 3 Cre10.g440200 SMC5B - 0 15 1.0 1.0 0 15 1.0 1.0 O n downregulated 10 Structural Maintenance of Chromosomes protein Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation. This is one of two SMC5 models near each other on scaffold 10. g10836.t1,SMC5B PF02463 PTHR19306:SF1,PTHR19306 KOG0979 - - GO:0005524,GO:0005694 AT5G15920.1 SMC5 structural maintenance of chromosomes 5 Cre11.g483250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g11996.t1 PF12499 - - - - - - - - Cre08.g377350 FAP121,FAP180,ADK5 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 14 Adenylate kinase; Flagellar Associated Protein Adenylate kinase homolog 5; found in the flagellar proteome and previously annotated as FAP180 [PMID: 15998802]. The FAP121 model in v3 is now part of this longer gene model also. g8886.t1,ADK5,FAP121,FAP180 PF05186,PF00612,PF00406,PF00625 PTHR23117 KOG3079 - - GO:0005515,GO:0005524,GO:0006139,GO:0019205 AT3G57550.2 AGK2,GK-2 guanylate kinase Cre11.g467553 - 0 1 1.0 nan 0 1 1.0 nan M n - 6 - - g11482.t1 PF03144,PF03764,PF00009 PTHR23115,PTHR23115:SF13 - - - GO:0005525,GO:0003924 AT2G45030.1 - Translation elongation factor EFG/EF2 protein Cre01.g041256 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - - - - g923.t2, g923.t1,Cre01.g041256.t1.1 - - - - - - - - - Cre10.g444183 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g10922.t1,Cre10.g444200.t1.3 - - - - - - - - - Cre02.g101550 MRS1 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g2071.t1,MRS1 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 AT5G21010.1 ATBPM5,BPM5 BTB-POZ and MATH domain 5 Cre02.g090750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g1697.t1,Cre02.g090750.t1.1 PF08574 - - - - - - - - Cre05.g236050 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 11 - - g5427.t1 - - KOG4674 - - - AT4G38070.1 - basic helix-loop-helix (bHLH) DNA-binding superfamily protein Cre02.g109200 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g2239.t1 - - - - - - - - - Cre12.g492152 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g12110.t1 - - - - - - - - - Cre09.g406300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g10072.t1,Cre09.g406300.t1.1 - - - - - - - - - Cre09.g388319 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 3 - - g9610.t1,Cre02.g123000.t1.1 PF10230 PTHR13390 KOG3975 - - - AT3G11620.1 - alpha/beta-Hydrolases superfamily protein Cre01.g002500 COP2,COP1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 Chlamyopsin, light-gated proton channel rhodopsin Chlamyopsin 1 (COP1); opsin-related, retinal binding protein; reference: Fuhrmann, M. and Hegemann, P.; Genbank entry Z48968; there is an alternatively spliced version of chlamyopsin (often referred to COP2); present in thylakoid-enriched fraction based o g60.t1,Cre01.g002500.t1.1,COP1,COP2 - - - - - - - - - Cre14.g627433 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g15110.t1 PF00892 PTHR13146 - - - GO:0016020 - - - Cre07.g319200 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g7379.t1,Cre07.g319200.t1.1 - - - - - - - - - Cre02.g095056 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g1830.t1 - - - - - - - - - Cre01.g005950 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 13 - - g143.t1,Cre01.g005950.t1.1 - - - - - - AT1G15140.1 - FAD/NAD(P)-binding oxidoreductase Cre07.g318000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g7352.t1,Cre07.g318000.t1.1 PF07933 PTHR12847 KOG2500 - - GO:0006897,GO:0016020 AT1G03900.1 ATNAP4,NAP4 non-intrinsic ABC protein 4 Cre16.g653250 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g15796.t1 - - - - - - - - - Cre07.g350550 EEP6 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g8155.t1,EEP6 PF03372 PTHR22748 - - - GO:0004518,GO:0006281 AT4G36050.2 - endonuclease/exonuclease/phosphatase family protein Cre07.g354075 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g8237.t1,Cre07.g354088.t1.2 - - - - - - - - - Cre03.g183250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g3798.t1,Cre03.g183250.t1.1 - - - - - - - - - Cre02.g102600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g2095.t1 - - - - - - AT5G03180.2 - RING/U-box superfamily protein Cre01.g060347 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g1257.t1,Cre23.g767107.t1.1,Cre23.g767107.t1.2 - - - - - - - - - Cre12.g496700 TRX17 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g12651.t1,Cre12.g496700.t1.1,TRX17 PF00085 PTHR10438:SF73,PTHR10438 KOG0907 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT3G02730.1 ATF1,TRXF1 thioredoxin F-type 1 Cre03.g212865 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 15 - - g4484.t1,Cre19.g757100.t1.1 - - - - - - - - - Cre17.g739650 MAE1,MFT1 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - - MATE efflux family protein Putative MATE efflux family protein; related to Arabidopsis ferric reductase defective (FRD3). Previously annotated as MFT1 g17891.t1,Cre17.g739650.t1.1,MAE1,MFT1 PF01554 PTHR11206:SF3,PTHR11206 - - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT4G38380.1 - MATE efflux family protein Cre12.g497250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g12640.t1 - PTHR22545 - - - - - - - Cre09.g412803 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 14 - - g10220.t1,Cre09.g412803.t1.1 PF03348 PTHR10383,PTHR10383:SF2 KOG2592 - - GO:0016020 AT3G06170.1 - Serinc-domain containing serine and sphingolipid biosynthesis protein Cre03.g199535 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 Low molecular mass early light-induced protein Present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018]. Previously annotated as LHL3. The LIL (or LHL, light harvesting-like) protein family comprises several thylakoid membrane proteins. g4362.t1,Cre19.g751700.t1.1,Cre19.g751700.t1.2 - - - - - - AT4G17600.1 LIL3:1 Chlorophyll A-B binding family protein Cre12.g561300 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 10 - - g13291.t1, g13291.t2 - - - - - - - - - Cre11.g478025 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g11867.t1 - - - - - - - - - Cre04.g230046 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g5037.t1 - - - - - - - - - Cre06.g258950 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g5822.t1 - - - - - - - - - Cre10.g449800 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g11057.t1 PF04657 - - - - - - - - Cre06.g303050 NIT3 - 0 1 1.0 nan 0 1 1.0 nan M n - 6 - - g7015.t1,Cre06.g303050.t1.1,NIT3 PF00173 PTHR19370:SF10,PTHR19370 KOG0536 - - GO:0020037 AT5G48810.1 ATB5-B,ATCB5-D,B5 #3,CB5-D cytochrome B5 isoform D Cre01.g033900 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 17 - - g765.t2, g765.t1 PF03110 - - - - GO:0003677,GO:0005634 AT5G43270.1 SPL2 squamosa promoter binding protein-like 2 Cre12.g502500 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 10 - - g12521.t1,Cre12.g502500.t1.1 PF03016 PTHR11062,PTHR11062:SF12 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre06.g302900 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7012.t1 PF01412 PTHR23180,PTHR23180:SF98 KOG0703 - - GO:0008060,GO:0008270,GO:0032312 AT4G32630.2 - ArfGap/RecO-like zinc finger domain-containing protein Cre07.g353200 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 16 - - g8214.t1 PF01926 PTHR10229 KOG0410 - - GO:0005525,GO:0005622 AT3G49725.1 - GTP-binding protein, HflX Cre07.g347950 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g8096.t1,Cre07.g347950.t1.1 PF00400 PTHR22847,PTHR22847:SF100 KOG0286 - - - AT4G02730.1 - Transducin/WD40 repeat-like superfamily protein Cre16.g678551 CYG34 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g16544.t1 PF00211 PTHR11920:SF127,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre10.g428000 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 17 - - g10571.t1 - PTHR12618 - - - - - - - Cre05.g235800 FBB19 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 Flagellar/basal body protein Conserved protein found in ciliated organisms, with unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation g5421.t1,Cre05.g235800.t1.1,FBB19 - PTHR18845 - - - - - - - Cre07.g352150 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g8190.t1, g8190.t3, g8190.t2 PF00069 PTHR26266,PTHR26266:SF142 - - - GO:0004672,GO:0005524,GO:0006468 AT2G40580.1 - Protein kinase superfamily protein Cre16.g682200 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 - - g16459.t1,Cre16.g682200.t1.1 - - - - - - AT1G72100.1 - late embryogenesis abundant domain-containing protein / LEA domain-containing protein Cre06.g278115 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 14 - - g6258.t1,Cre13.g594250.t1.1,Cre13.g594250.t1.2 - - - - - - - - - Cre06.g278114 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g6257.t1,Cre13.g594200.t1.1,Cre13.g594200.t1.2 - - - - - - - - - Cre06.g278117 CPLD7 - 0 5 1.0 1.0 0 5 1.0 1.0 C Y - 9 Predicted protein Conserved expressed protein of unknown function; has strong similarity to proteins of plants and cyanobacteria g6260.t1,Cre13.g594350.t1.1,Cre13.g594350.t1.2,CPLD7 - - - - - - AT2G45990.1 - - Cre06.g278111 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 1 - - g6254.t1,Cre13.g594050.t1.1,Cre13.g594050.t1.2 PF00520 PTHR10217 KOG0498 - K05391 GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G22200.1 AKT2,AKT2/3,AKT3,KT2/3 potassium transport 2/3 Cre06.g278110 - 0 12 1.0 1.0 0 12 1.0 1.0 SP n - 13 - - g6253.t1,Cre13.g594000.t1.1,Cre13.g594000.t1.2 - PTHR11017 - - - - - - - Cre06.g278113 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g6256.t1,Cre13.g594150.t1.1 - - - - - - - - - Cre06.g278112 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6255.t1,Cre13.g594100.t1.1,Cre13.g594100.t1.2 - - - - - - - - - Cre06.g256500 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g5764.t2,Cre06.g256500.t1.1, g5764.t1 - PTHR14187:SF33,PTHR14187 - - - - - - - Cre06.g278119 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 17 - - g6262.t1,Cre13.g594450.t1.1,Cre13.g594450.t1.2 PF00561 PTHR10992,PTHR10992:SF209 - - - - - - - Cre06.g278118 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 15 - - g6261.t2,Cre13.g594400.t1.1, g6261.t1,Cre13.g594400.t3.1, g6261.t3,Cre13.g594400.t2.1 - - - - - - - - - Cre03.g185000 BGS2,GTR8 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 1,3-beta-D-glucan synthase 1,3-beta-D-glucan synthase and glycosyl transferase. Previously annotated as GTR8 g3834.t1,BGS2,GTR8 PF02364 PTHR12741,PTHR12741:SF4 - - - GO:0000148,GO:0003843,GO:0006075,GO:0016020 AT2G13680.1 ATGSL02,CALS5,GLS2 callose synthase 5 Cre09.g393650 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 17 - - g9416.t1,Cre09.g393650.t1.1 PF00069,PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G67890.1 - PAS domain-containing protein tyrosine kinase family protein Cre09.g393654 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 16 - - g9760.t1,Cre02.g129650.t1.1 PF01342 - - - - GO:0003677,GO:0005634 - - - Cre12.g490700 MIN1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Mini-eyespot protein Mini-eyespot protein required for eyespot assembly and organization; min1 mutant cells contain mini eyespots and do not phototax; MIN1 protein contains predicted C2, transmembrane, and LysM domains and is potentially membrane-associated; to date, the MIN1 g12171.t1,Cre12.g490700.t1.1 PF00168 - - - - GO:0005515 - - - Cre12.g547100 SMM43,CGL2 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 6 S-adenosyl-L-methionine-dependent methyltransferase S-adenosyl-L-methionine-dependent methyltransferase. Previously annotated as CGL2 g13611.t1,SMM43 PF08241 PTHR10108,PTHR10108:SF38 - - - GO:0008152,GO:0008168 AT3G01660.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre03.g159800 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g3272.t1 PF04607 PTHR21262 - - - GO:0015969 AT1G54130.1 AT-RSH3,ATRSH3,RSH3 RELA/SPOT homolog 3 Cre01.g036800 KIN9-1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 13 - - g826.t1,KIN9-1 PF00225 PTHR24115,PTHR24115:SF181 - - K10397 GO:0003777,GO:0005524,GO:0007018 AT2G28620.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre02.g077976 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g1409.t1 - PTHR23050:SF89,PTHR23050 - - - - - - - Cre04.g215100 SSS1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g4669.t1 - - - - - - - - - Cre06.g299200 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g6921.t1 PF00004 PTHR20953 - - - GO:0005524 AT1G73170.2 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre13.g565517 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 - - g13918.t1 - - - - - - - - - Cre16.g659900 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 - - g15940.t1 - - - - - - - - - Cre17.g700750 GFY3 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 17 - - g16992.t1,Cre17.g700750.t1.1,GFY3 PF01184 - - - K07034 GO:0016020 - - - Cre07.g322650 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g7454.t1,Cre07.g322650.t1.1 - - - - - - - - - Cre17.g742500 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g17957.t1 PF01753 PTHR13244 - - - GO:0008270 - - - Cre10.g464750 NAT25 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11387.t1,Cre10.g464750.t1.1,NAT25 PF00583 PTHR23091:SF34,PTHR23091 - - - GO:0008080,GO:0008152 AT1G24040.1 - Acyl-CoA N-acyltransferases (NAT) superfamily protein Cre14.g609950 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g14703.t1,Cre14.g609950.t1.1 - - - - - - - - - Cre17.g702451 HLM27 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g17029.t1,Cre17.g702450.t1.3,HLM27 PF00856 PTHR22884,PTHR22884:SF88 - - - GO:0005515 AT2G23740.2 - nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding Cre02.g095069 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 - - g1843.t1,Cre11.g471150.t1.1,Cre11.g471150.t1.2 PF00578 PTHR10681:SF5,PTHR10681 - 1.11.1.15 K03564 GO:0016209,GO:0016491 AT5G06290.1 2-Cys Prx B,2CPB 2-cysteine peroxiredoxin B Cre16.g665600 CSK7 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g16065.t1,Cre16.g665600.t1.1,CSK7 PF00069 PTHR24054 KOG0668 2.7.11.1 K03097 GO:0004672,GO:0005524,GO:0006468 AT5G67380.1 ATCKA1,CKA1 casein kinase alpha 1 Cre02.g095063 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g1837.t1,Cre11.g470900.t1.1 - - - - - - - - - Cre02.g095066 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1840.t1 - PTHR15535,PTHR15535:SF1 - - - - - - - Cre02.g095067 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g1841.t1,Cre11.g471050.t1.1 - - - - - - - - - Cre16.g662650 NAT36 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g15999.t1,NAT36 PF00583 PTHR23091:SF34,PTHR23091 KOG3139 - - GO:0008080,GO:0008152 AT2G39000.1 - Acyl-CoA N-acyltransferases (NAT) superfamily protein Cre03.g149400 RWP11 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 RWP-RK transcription factor Putative RWP-RK domain transcription factor [PMID: 15785851]. Tandem pair with RWP4 with which there is amino acid homology around the RWP-RK domain and some intron conservation. Part of the model is tentative. g3038.t1,RWP11 PF02042 - - - - - AT5G66990.1 - RWP-RK domain-containing protein Cre09.g406150 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g10069.t1 - - - - - - - - - Cre02.g076625 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g1377.t1 PF07282 - - - - - - - - Cre11.g467719 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g11649.t1,Cre22.g765500.t1.1,Cre22.g765500.t1.2 - - - - - - - - - Cre06.g285150 APX2 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 L-ascorbate peroxidase - g6629.t1,Cre06.g285150.t1.1 PF00141 - - 1.11.1.11 K00434 GO:0004601,GO:0006979,GO:0020037,GO:0055114 AT4G32320.1 APX6 ascorbate peroxidase 6 Cre01.g038151 - 0 18 1.0 1.0 0 18 1.0 1.0 O n - 10 - - g854.t1,Cre01.g038150.t1.3 PF00439,PF00004 PTHR23069 KOG0737 - - GO:0005515,GO:0005524 AT1G05910.1 - cell division cycle protein 48-related / CDC48-related Cre11.g467710 VSP1 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 12 Hydroxyproline-rich cell wall protein Extracellular matrix protein (cell wall protein); vegetative HRGP and tyrosine-rich wall protein; structural protein [PMID: 7689882; Genbank entry L16461] g11640.t1,Cre18.g743550.t2.1,VSP1, g11640.t2,Cre18.g743550.t1.1,VSP1 - - - - - - - - - Cre11.g467713 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g11643.t1,Cre18.g743400.t1.1,Cre18.g743400.t1.2 - - - - - - - - - Cre17.g732350 GOX4 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 3 Glyoxal or galactose oxidase The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate g17698.t2,GOX4, g17698.t1,GOX4 PF09118,PF07250 - KOG3815 - - - AT1G19900.1 - glyoxal oxidase-related protein Cre14.g630763 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g15190.t1 PF01753 - - - - GO:0008270 - - - Cre03.g183400 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g3801.t1 - - - - - - AT3G55250.1 - - Cre02.g107400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g2202.t1, g2202.t3, g2202.t2 - PTHR25480,PTHR25480:SF188 - - - - - - - Cre08.g369850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g8667.t1 PF00664,PF00005 PTHR24223 KOG0058 - - GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT1G30410.1 ATMRP13,MRP13 multidrug resistance-associated protein 13 Cre14.g617050 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g14867.t1 - - KOG4462 - - - - - - Cre04.g224500 - 1 33 1.0 1.0 1 33 1.0 1.0 C n - 17 - - g4897.t1 PF01061,PF08370,PF00005 PTHR19241,PTHR19241:SF10 KOG0065 - - GO:0016020,GO:0005524,GO:0016887 AT2G29940.1 ATPDR3,PDR3 pleiotropic drug resistance 3 Cre07.g345550 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 16 - - g8041.t1,Cre07.g345550.t1.1 PF01753 PTHR13244 - - - GO:0008270 AT1G17110.2 UBP15 ubiquitin-specific protease 15 Cre07.g322450 HLM13 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g7450.t1,HLM13 PF00855,PF00856 PTHR22884,PTHR22884:SF124 - 2.1.1.43 K06101 GO:0005515 AT1G77300.1 ASHH2,CCR1,EFS,SDG8 histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) Cre06.g273000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g6125.t1,Cre06.g273000.t1.1 PF01230 PTHR23089 KOG3275 - - - AT3G56490.1 HINT1,HIT3 HIS triad family protein 3 Cre04.g220461 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g4809.t1 - - - - - - - - - Cre09.g388763 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g9622.t1,Cre02.g123600.t1.1 PF01734 - - - - GO:0006629 - - - Cre01.g012150 MSRA4 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 6 Peptide methionine sulfoxide reductase Peptide methionine sulfoxide reductase. Peptidylprolyl isomerase, FKBP-type domain g301.t1,Cre01.g012150.t1.1 PF00254,PF01625 PTHR10173:SF6,PTHR10173 KOG1635 1.8.4.11 K07304 GO:0006457,GO:0016671,GO:0019538,GO:0055114 AT5G07470.1 ATMSRA3,PMSR3 peptidemethionine sulfoxide reductase 3 Cre16.g664550 SHMT1 - 0 1 1.0 nan 0 1 1.0 nan M n - 2 Serine hydroxymethyltransferase Serine hydroxymethyltransferase (gi:17066746, high light-inducible; Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. g16043.t1,Cre16.g664550.t1.1,SHMT1 PF00464 PTHR11680 KOG2467 2.1.2.1 K00600 GO:0004372,GO:0006544,GO:0006563 AT4G37930.1 SHM1,SHMT1,STM serine transhydroxymethyltransferase 1 Cre12.g535400 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n upregulated 2 - - g13169.t1 - - - - - - - - - Cre06.g300350 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6950.t2, g6950.t1 - - - - - - - - - Cre16.g670200 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g16225.t1,Cre16.g670200.t1.1 PF10235 PTHR11800,PTHR11800:SF1 KOG3476 - - - AT1G61780.1 - postsynaptic protein-related Cre10.g449050 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g11040.t1,Cre10.g449050.t1.1 - - - - - - AT5G28910.1 - - Cre02.g086050 PUS4 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 tRNA-pseudouridine synthase RNA pseudouridine synthase-like protein, with a putative mitochondrial targeting sequence g1593.t1,PUS4 PF01416 PTHR11142 KOG2554 - - GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT1G34150.1 - Pseudouridine synthase family protein Cre01.g035750 MSC3 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n downregulated 16 Mechanosensitive ion channel Sequence similarity with bacterial (E. coli) mechanosensitive ion channel MscS g805.t1,Cre01.g035750.t1.1,MSC3 PF00924 - - - - GO:0016020,GO:0055085 AT4G00290.1 - Mechanosensitive ion channel protein Cre17.g745547 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - Fip1 homolog, cleavage and polyadenylation factor Fip1 homolog, cleavage and polyadenylation factor. Contains SR repeats and involved in pre-mRNA polyadenylation and interacts with poly(A) polymerase. Identified by comparative genomics as being present only in organisms having cilia, including non-moti g18027.t1,Cre20.g759400.t1.1,Cre20.g759400.t1.2 PF05182 - - - - - AT5G58040.1 ATFIP1[V],ATFIPS5,FIP1[V],FIPS5 homolog of yeast FIP1 [V] Cre09.g402923 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n downregulated 18 - - g10031.t1,Cre02.g120450.t1.1 - - - - - - - - - Cre14.g608150 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 16 - - g14660.t1 - PTHR25719:SF5,PTHR25719 - - - - AT4G13750.1 NOV Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein Cre12.g509500 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 3 - - g12362.t1 - PTHR23050:SF87,PTHR23050 - - - - AT3G50360.1 ATCEN2,CEN1,CEN2 centrin2 Cre03.g145707 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g2950.t1,Cre01.g059800.t1.1 PF07093 PTHR13060 - - - - AT5G65490.1 - - Cre04.g211900 ELG35 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 8 Exostosin-like glycosyltransferase Exostosin-like glycosyltransferases g4741.t1,ELG35 PF03016 PTHR11062,PTHR11062:SF20 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre07.g323850 PPP27 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 5 - - g7480.t1,Cre07.g323850.t1.1,PPP27 PF03031 PTHR12210:SF18,PTHR12210 KOG1605 - - GO:0005515 AT5G11860.1 SSP5 SCP1-like small phosphatase 5 Cre09.g410150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g10162.t1 - - - - - - - - - Cre01.g039200 IFT22,FAP9 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Intraflagellar transport protein 22 Intraflagellar transport (IFT)-particle proteinm, complex B. Flagellar Associated Protein, found in the Chlamydomonas flagellar proteome [PMID: 15998802]. Orthologs in most flagellated eukaryotes (RABL5 in human), a member of the Ras superfamily of GTPas g876.t1,Cre01.g039200.t1.1,FAP9 PF00025 PTHR24073,PTHR24073:SF492 - - K07935 GO:0005525 AT4G09720.1 ATRABG3A,RABG3A RAB GTPase homolog G3A Cre16.g669600 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g16238.t1 - - - - - - - - - Cre02.g110263 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2263.t1, g2263.t2, g2263.t3 - - - - - - - - - Cre01.g033091 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 16 - - g748.t3, g748.t2, g748.t1 PF01042,PF01902 PTHR12196 KOG2316 - - - AT3G04480.1 - endoribonucleases Cre02.g080150 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 16 - - g1464.t1 - - - - - - - - - Cre13.g575650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g14148.t1 PF00069 PTHR24056,PTHR24056:SF86 KOG0663 - - GO:0004672,GO:0005524,GO:0006468 AT1G67580.1 - Protein kinase superfamily protein Cre06.g309200 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g7154.t1,Cre06.g309200.t1.1 - - - - - - - - - Cre03.g188400 RBOL2,RBO2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 Respiratory burst oxidase Putative NADPH oxidase homolog, related to plant respiratory burst oxidase; ferric reductase like transmembrane component; possible NADPH oxidase activity; possible cytochrome b-245 heavy chain. Previously annotated as RBOL2 g3902.t1,RBOL2 PF01794,PF08022 PTHR11972 - 1.11.1.-,1.6.3.- K13447 GO:0005506,GO:0009055,GO:0016021,GO:0016491,GO:0050660 AT4G25090.1 - Riboflavin synthase-like superfamily protein Cre02.g144800 LCI8 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 5 N-acetylglutamate synthase/acetylglutamate kinase N-acetylglutamate synthase (EC 2.3.1.1) involved in arginine biosynthesis; amino-acid N-acetyltransferase; similar to Arabidopsis (GenBank NP_974701) and Methylococcus capsulatus (GenBank YP_114514) genes; Low-CO2 inducible gene revealed by cDNA array ana g2573.t1 PF00583,PF00696 - KOG2436 2.3.1.1 K14682 GO:0008080,GO:0008152,GO:0008652 AT4G37670.2 NAGS2 N-acetyl-l-glutamate synthase 2 Cre02.g144802 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2574.t1 - - - - - - - - - Cre12.g542550 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g13720.t1 PF01529 PTHR22883 - - - GO:0008270 AT5G41060.1 - DHHC-type zinc finger family protein Cre03.g203050 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 16 - - g4258.t1 - - - - - - - - - Cre07.g320200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g7405.t1 PF01344 PTHR23244,PTHR23244:SF74 - - - GO:0005515 AT1G18610.1 - Galactose oxidase/kelch repeat superfamily protein Cre04.g226100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g4943.t1, g4943.t2 - - - - - - - - - Cre13.g577650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g14193.t1 - - - - - - - - - Cre04.g229100 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 - - g5015.t1,Cre04.g229100.t1.1 PF06090 PTHR14456,PTHR14456:SF2 - - - GO:0005524,GO:0035299 AT1G22100.1 - Inositol-pentakisphosphate 2-kinase family protein Cre01.g023550 FAP234 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 Flagellar Associated Protein, putative outer arm dynein light chain Putative outer arm dynein light chain. Conserved uncharacterized Flagellar Associated Protein with leucine-rich repeat; found in the flagellar proteome [PMID: 15998802] g543.t1 - PTHR10588:SF19,PTHR10588 KOG1947 - - - AT5G22320.1 - Leucine-rich repeat (LRR) family protein Cre16.g679781 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g16771.t1,Cre01.g067950.t1.1 PF00856 PTHR13271 - - - GO:0005515 AT1G14030.1 - Rubisco methyltransferase family protein Cre03.g171650 HEL16 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 8 - - g3538.t1,Cre03.g171650.t1.1,HEL16 PF00271,PF07717,PF00270,PF04408 PTHR18934:SF68,PTHR18934 KOG0920 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G58060.1 - RNA helicase family protein Cre12.g486950 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 9 - - g12251.t1 - - - - - - - - - Cre16.g686203 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g16372.t1 - - - - - - - - - Cre16.g686202 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g16371.t1 - - - - - - - - - Cre16.g686200 TPS3 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 Trehalose-6-phosphate synthase/phosphatase - g16370.t1,TPS3 PF02358,PF00982 PTHR10788 KOG1050 2.4.1.15 K00697 GO:0003824,GO:0005992 AT1G78580.1 ATTPS1,TPS1 trehalose-6-phosphate synthase Cre16.g672200 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 13 - - g16683.t1 - - - - - - - - - Cre14.g627200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g15103.t1 - - KOG4673 - - - - - - Cre12.g506851 BBS3A - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g12433.t1,Cre12.g506800.t1.3,BBS3A PF00025 PTHR11711,PTHR11711:SF21 - - - GO:0005525 AT5G14670.1 ARFA1B,ATARFA1B ADP-ribosylation factor A1B Cre12.g506850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g12432.t1,Cre12.g506850.t1.1 - PTHR10183,PTHR10183:SF144 KOG0037 - - - AT3G20410.1 CPK9 calmodulin-domain protein kinase 9 Cre17.g734900 - 0 9 1.0 1.0 0 9 1.0 1.0 C n upregulated 7 - - g17783.t1, g17783.t2,Cre17.g734900.t1.1 PF02074 - - - - GO:0004181,GO:0006508 - - - Cre09.g392900 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 11 - - g9431.t1 - - - - - - - - - Cre03.g177550 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 - - g3671.t1,Cre03.g177550.t1.1 PF00023 PTHR24198 KOG4412 - - GO:0005515 AT2G03430.1 - Ankyrin repeat family protein Cre13.g576300 GSC1,APH1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 Gamma-secretase accessory subunit Homologous to anterior-pharynx-defective; forms the gamma-secretase complex with presenilin, nicastrin and pen-2; involved in regulated intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. g14162.t1,Cre13.g576300.t1.1,APH1,GSC1 PF06105 PTHR12889 KOG3972 - - GO:0016021,GO:0016485,GO:0043085 AT2G31440.1 - - Cre10.g429017 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g10599.t1,Cre10.g429017.t1.1 - - - - - - - - - Cre14.g616151 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g14844.t1 - - - - - - - - - Cre13.g589750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g14467.t1 - - - - - - - - - Cre13.g581100 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g14273.t1,Cre13.g581100.t1.1 - - - - - - - - - Cre17.g702200 ANK29 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g17024.t1,Cre17.g702200.t1.1,ANK29 PF00023 PTHR24186,PTHR24186:SF165 KOG4214 - - GO:0005515 AT4G35450.1 AFT,AKR2,AKR2A ankyrin repeat-containing protein 2 Cre09.g403330 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 7 - - g10044.t1 - - - - - - - - - Cre06.g282651 TRX16 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 18 - - g6573.t1,TRX16 PF00085 PTHR10438:SF84,PTHR10438 KOG0910 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT3G06730.1 TRX P,TRX z Thioredoxin z Cre02.g103400 OPR118 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 1 - - g2112.t1,Cre02.g103400.t1.1 - - - - - - - - - Cre06.g268700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g6028.t1 - - - - - - - - - Cre09.g396102 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 16 - - g9827.t1,Cre02.g132700.t1.1,Cre02.g132700.t1.2 PF00069 PTHR22967 KOG2345 - - GO:0004672,GO:0005524,GO:0006468 AT5G08160.1 ATPK3,PK3 serine/threonine protein kinase 3 Cre06.g265750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g5966.t1 - PTHR12270,PTHR12270:SF14 - - - - - - - Cre08.g377800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 11 - - g8895.t1 - - - - - - - - - Cre12.g513852 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 - - g12685.t1 - - - - - - AT2G32970.2 - - Cre01.g052450 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g1162.t1 - - - - - - - - - Cre03.g156650 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 12 - - g3198.t1 PF02816 PTHR14187,PTHR14187:SF3 - - - GO:0004674,GO:0005524,GO:0006468 - - - Cre03.g204800 RTA2 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g4217.t1,Cre03.g204800.t1.1,RTA2 PF02374 PTHR10803 KOG2825 3.6.3.16 K01551 - AT1G01910.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre17.g739300 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 12 - - g17879.t1,Cre17.g739300.t1.1 PF01894 - KOG3267 - - - AT1G21065.1 - - Cre16.g695300 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g15562.t1 PF11957 PTHR13265 - - K12878 - AT5G09860.1 AtHPR1,AtTHO1,HPR1,THO1 nuclear matrix protein-related Cre14.g611517 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g14740.t1 - PTHR11260:SF68,PTHR11260 KOG2903 - - - AT5G44000.1 - Glutathione S-transferase family protein Cre15.g637000 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 7 - - g15363.t1 - - - - - - - - - Cre04.g214750 VMP7,VMPL2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 Endosomal R-SNARE protein, VAMP-like family (R.III) Endosomal R-SNARE protein, VAMP-like family (R.III). Expressed Protein. Contains R-SNARE domain distantly similar to VAMP4, not found in land plants. Part of 2 member gene family on same scaffold separated by one gene (<-VMPL1, IFM1, <-VMPL2). Class R.I g4677.t1,VMP7,VMPL2 PF00957 PTHR21136,PTHR21136:SF86 KOG0860 - - GO:0016021,GO:0016192 AT5G11150.1 ATVAMP713,VAMP713 vesicle-associated membrane protein 713 Cre02.g091600 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g1716.t1 - - - - - - - - - Cre16.g673841 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g16715.t1,Cre01.g065650.t1.1,Cre01.g065650.t1.2 PF10218 PTHR13481 - - - - AT3G59390.1 - - Cre16.g678452 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Endoplasmic reticulum Qc-SNARE protein, Use1-family (Qc.I) Endoplasmic reticulum Qc-SNARE protein, Use1-family (Qc.I). Conserved Protein. Class Qc.I SNARE, involved in Golgi-to-ER vesicle transport (PMID: 17596510). Previously annotated as USE1 g16138.t1,Cre01.g063800.t1.1 - - - - - - AT1G54110.1 - Membrane fusion protein Use1 Cre14.g617200 RLS7 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - RegA/RlsA-like protein Member of a family of proteins [PMID: 16720695, 16622701] related to Volvox carteri RegA, which is a putative transcription repressor [PMID: 9895312] containing a SAND domain (IPR000770 SAND; PF01342). g14871.t1,RLS7 PF01342 PTHR24223,PTHR24223:SF223 - - - GO:0003677,GO:0005634 - - - Cre03.g160250 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 12 - - g3282.t1 - - - - - - - - - Cre07.g325728 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 11 - - g7543.t1,Cre26.g772700.t1.1,Cre26.g772700.t1.2 PF00903 - - - - - - - - Cre07.g325729 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 11 - - g7544.t1,Cre26.g772750.t1.1 - - - - - - - - - Cre07.g325726 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 15 - - g7541.t1,Cre26.g772632.t1.1,Cre26.g772632.t1.2 - - - - - - - - - Cre07.g325727 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g7542.t1,Cre26.g772650.t1.1 PF03109 PTHR10566:SF23,PTHR10566 KOG1236 - - - AT1G61640.1 - Protein kinase superfamily protein Cre07.g325724 PTP1 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 Protein tyrosine phosphatase - g7539.t1,Cre26.g772550.t1.1,PTP1, g7539.t2,Cre26.g772550.t2.1,PTP1 PF00102 PTHR23339,PTHR23339:SF25 KOG1720 3.1.3.48 K01104 GO:0004725,GO:0006470 AT5G39400.1 ATPTEN1,PTEN1 Calcium/lipid-binding (CaLB) phosphatase Cre07.g325722 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g7536.t1,Cre26.g772400.t2.1, g7536.t2,Cre26.g772400.t3.1, g7536.t3,Cre26.g772400.t1.1 PF08766,PF02229 PTHR13215 KOG2712 - - GO:0003677,GO:0003713,GO:0006355 AT4G10920.1 KELP transcriptional coactivator p15 (PC4) family protein (KELP) Cre07.g325723 ADK1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - Adenylate kinase - g7537.t1,Cre26.g772450.t1.1,ADK1 PF00406 PTHR23359 KOG3079 - - GO:0005524,GO:0006139,GO:0019205 AT5G63400.1 ADK1 adenylate kinase 1 Cre09.g403800 DYHB,ROC30,ROC54,ODA4 - 0 20 1.0 1.0 0 20 1.0 1.0 O n - 16 Flagellar outer arm dynein heavy chain beta, involved in circadian rhythms Flagellar outer arm dynein heavy chain beta. An ATPase/microtubule motor. Matsuo et al.\'s (2008) roc30 and roc54 (rhythm of chloroplast) circadian rhythm mutant loci map here. Previously annotated as ODA4 g9185.t1,Cre09.g403800.t1.1,DYHB,ODA4,ROC30,ROC54 PF08385,PF08393,PF07728,PF03028 PTHR10676,PTHR10676:SF36 KOG3595 - - GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 - - - Cre14.g632799 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g15252.t1 - - - - - - - - - Cre09.g395450 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g9381.t2,Cre09.g395450.t1.1, g9381.t1 PF01344 PTHR24412 - - - GO:0005515 AT1G14330.1 - Galactose oxidase/kelch repeat superfamily protein Cre02.g075100 TPR3 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g1343.t2,TPR3, g1343.t1,Cre02.g075100.t1.1,TPR3 - PTHR22904:SF60,PTHR22904 KOG4234 - - - AT4G30480.2 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre04.g217991 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 1 - - g4639.t1,Cre04.g216351.t1.2 PF00400 PTHR14344:SF3,PTHR14344 - - - - - - - Cre02.g074850 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g1337.t1 PF00069 PTHR24349:SF99,PTHR24349 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre02.g143607 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g2840.t1 - - - - - - - - - Cre16.g692650 CGL4 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 10 Predicted protein Conserved expressed protein g15624.t1,Cre16.g692650.t1.1 - - - - - - AT3G58800.1 - - Cre03.g144424 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 1 - - g2885.t1 PF00847 - - - - GO:0003700,GO:0006355 AT1G51190.1 PLT2 Integrase-type DNA-binding superfamily protein Cre03.g154651 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 10 - - g3151.t1,Cre03.g154650.t1.3 - - - - - - - - - Cre16.g693300 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 10 - - g15612.t1 - - - - - - - - - Cre06.g282850 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 10 - - g6578.t1 - - - - - - - - - Cre17.g722675 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g17483.t1,Cre17.g722657.t1.2 - - - - - - - - - Cre07.g333400 MMP23 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 14 - - g7752.t1,MMP23 PF05548 - - - - - - - - Cre01.g031050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g704.t1,Cre01.g031050.t1.1, g704.t2 PF11942,PF03439 PTHR11125 KOG1999 - - - AT4G08350.1 GTA02,GTA2 global transcription factor group A2 Cre10.g436850 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated - - - g10767.t1,Cre10.g436850.t1.1 PF00515,PF07721 PTHR23083 - - - GO:0005515,GO:0042802 AT3G11540.1 SPY Tetratricopeptide repeat (TPR)-like superfamily protein Cre06.g263289 - 0 1 1.0 nan 0 1 1.0 nan SP n - 4 - - g5915.t1,Cre06.g263289.t1.1 PF01255 PTHR10291 KOG1602 2.5.1.- K11778 GO:0016765 AT2G17570.1 - Undecaprenyl pyrophosphate synthetase family protein Cre05.g236926 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 11 - - g5451.t1,Cre05.g236926.t1.1 PF00583 - - - - GO:0008080,GO:0008152 - - - Cre12.g525450 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g12931.t1 - - - - - - - - - Cre10.g437100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 3 - - g10772.t1 PF04064,PF04063 PTHR13387:SF8,PTHR13387 KOG2973 - - - AT1G14300.1 - ARM repeat superfamily protein Cre06.g260950 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 8 - - g5864.t1,Cre06.g260950.t1.1 PF00350 PTHR11216,PTHR11216:SF31 KOG1954 - - GO:0003924,GO:0005525 AT3G20290.1 ATEHD1,EHD1 EPS15 homology domain 1 Cre10.g434150 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g10709.t1 - - - - - - - - - Cre16.g660000 CPLD63 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 6 - - g15942.t1,Cre16.g660000.t1.1 PF01169 PTHR12608 KOG2881 - - GO:0016020 AT4G13590.2 - Uncharacterized protein family (UPF0016) Cre10.g430450 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 13 - - g10630.t1,Cre10.g430450.t1.1 PF00551,PF01842 PTHR10520:SF7,PTHR10520 KOG3076 3.5.1.10 K01433 GO:0009058,GO:0016742,GO:0008152,GO:0016597,GO:0006189,GO:0008864 AT5G47435.1 - formyltetrahydrofolate deformylase, putative Cre09.g408250 EEF1A2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g10118.t1,EEF1A2 PF00009,PF03143 PTHR26328:SF47,PTHR26328 KOG0458 - - GO:0003924,GO:0005525 AT1G07930.2 - GTP binding Elongation factor Tu family protein Cre14.g613000 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g14771.t1 - - - - - - - - - Cre01.g006150 EFG9,PRFC1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 4 Translation elongation factor related to peptide-chain release factor Translation elongation factor related to peptide-chain release factor RF3, prokaryotic type; probably organelle-targeted; binds GTP; similarity to EfTu elongation factor. Previously annotated as PRFC1 g148.t1,EFG9,PRFC1 PF00009,PF03144 PTHR23115:SF85,PTHR23115 - - - GO:0003924,GO:0005525 AT1G62750.1 ATSCO1,ATSCO1/CPEF-G,SCO1 Translation elongation factor EFG/EF2 protein Cre13.g591851 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g14511.t1,Cre13.g591850.t1.3 - - - - - - - - - Cre03.g172322 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g3552.t1,Cre03.g172322.t1.1 - - - - - - - - - Cre09.g399104 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 10 - - g9910.t1,Cre02.g136200.t1.1,Cre02.g136200.t1.2 - - - - - - - - - Cre15.g640750 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 17 - - g15327.t1 PF00069 PTHR24356 - - - GO:0004672,GO:0005524,GO:0006468 AT2G32510.1 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 Cre09.g389356 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 5 - - g9639.t1,Cre02.g124350.t1.1,Cre02.g124350.t1.2 PF02133 - KOG2466 - K03457 GO:0015205,GO:0015851,GO:0016020 AT5G03555.1 - permease, cytosine/purines, uracil, thiamine, allantoin family protein Cre07.g351950 ZRT1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Zinc-nutrition responsive transporter Related to plant homologs [PMID: 15710683; PMID: 16766055]. Appears as CrZip1 in PMID: 15710683. Cis-acting regulatory elements were characterized by Fei et al. 2009 [PMID: 19351705]. g8187.t1 PF02535 PTHR11040,PTHR11040:SF29 - - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 AT1G60960.1 ATIRT3,IRT3 iron regulated transporter 3 Cre09.g389350 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 11 - - g9511.t1 - - - - - - - - - Cre02.g116700 PTK11 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 6 Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g2415.t1,Cre02.g116700.t1.1,PTK11 PF00069 PTHR23257,PTHR23257:SF99 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G50000.1 - Protein kinase superfamily protein Cre02.g113950 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g2352.t1 - - - - - - - - - Cre16.g690655 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g16868.t1,Cre01.g072250.t1.1 - - KOG0811 - - - - - - Cre16.g654550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g15824.t1,Cre16.g654550.t1.1 PF02373 PTHR10694:SF13,PTHR10694 - - - - AT3G48430.1 REF6 relative of early flowering 6 Cre12.g556350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g13405.t1 PF00295 - - - - GO:0004650,GO:0005975 AT3G57790.1 - Pectin lyase-like superfamily protein Cre11.g467606 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g11535.t1 - - - - - - - - - Cre04.g221100 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 13 - - g4826.t1,Cre04.g221100.t1.1 - - - - - - - - - Cre08.g375084 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8838.t1, g8838.t2 PF01480,PF00076 PTHR18806,PTHR18806:SF4 KOG2253 - K12822 GO:0006397,GO:0003676 AT1G60200.1 - splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein Cre11.g467600 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g11731.t1 PF05548 - - - - - - - - Cre10.g431500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g10652.t1 - - - - - - - - - Cre14.g627050 - 0 12 1.0 1.0 0 12 1.0 1.0 C n downregulated 11 - - g15100.t1,Cre14.g627050.t1.1 - - - - - - - - - Cre07.g331000 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g7701.t1 - - KOG4761 - - - AT3G53970.1 - proteasome inhibitor-related Cre14.g620000 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g14940.t1,Cre14.g620000.t1.1 - - - - - - - - - Cre12.g555300 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g13426.t1 - - - - - - - - - Cre09.g400750 AMT5 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - Ammonium transporter Belongs to AMT1 family (Amt1;5 or Amt1.5) two different splicing variants have been found for this gene, this one is AMT5b, the shorter one with additional intron (AY588243); was AMT1Eb; belongs to AMT1 family (Amt1;5 or Amt1.5); two different splicing va g9253.t1,Cre09.g400750.t1.1,AMT5 PF00909 PTHR11730:SF8,PTHR11730 KOG0682 - - GO:0008519,GO:0016020,GO:0072488 AT3G24290.1 AMT1;5 ammonium transporter 1;5 Cre08.g373450 SBE4 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 7 - - g8801.t1,SBE4 PF00128,PF02806,PF02922 PTHR10357:SF21,PTHR10357 - - - GO:0003824,GO:0005975,GO:0043169,GO:0004553 AT3G20440.2 BE1,EMB2729 Alpha amylase family protein Cre12.g551550 - 0 12 1.0 1.0 0 12 1.0 1.0 C n - 10 - - g13512.t1 PF05970,PF00098 PTHR23274 KOG0487 - - GO:0003676,GO:0008270 - - - Cre10.g435350 ESU1 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 15 Endosulfine cAMP-regulated phosphoprotein The endosulfine domain is a conserved region found in both cAMP-regulated phosphoprotein 19 (ARPP-19) and Alpha/Beta endosulfine. No function has yet been assigned to ARPP-19. Endosulfine is the endogenous ligand for the ATP-dependent potassium (K ATP) ch g10737.t1,ESU1, g10737.t2,ESU1 PF04667 - - - - - - - - Cre07.g346550 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 9 - - g8064.t1 PF00069 PTHR23257,PTHR23257:SF288 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre03.g165600 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 - - g3398.t1,Cre03.g165600.t1.1 - - - - - - - - - Cre12.g522100 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12859.t1 PF00650 PTHR10174:SF78,PTHR10174 - - - - AT1G14820.1 - Sec14p-like phosphatidylinositol transfer family protein Cre10.g425900 LHCA5 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Light-harvesting protein of photosystem I - g10525.t1,Cre10.g425900.t1.1 PF00504 PTHR21649 - - - GO:0009765,GO:0016020 AT3G47470.1 CAB4,LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 Cre14.g608452 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 17 - - g14668.t1 PF00443 PTHR24006,PTHR24006:SF57 - 3.1.2.15 K11366 GO:0004221,GO:0006511 AT5G10790.1 UBP22 ubiquitin-specific protease 22 Cre10.g447050 - 0 1 1.0 nan 0 1 1.0 nan - n - 12 - - g10996.t1 - - - - - - - - - Cre01.g012400 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 16 - - g308.t1,Cre01.g012400.t1.1 PF00892 PTHR22911:SF6,PTHR22911 KOG4510 - - GO:0016020 AT2G05755.1 - Nodulin MtN21 /EamA-like transporter family protein Cre13.g589100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 - - g14452.t1,Cre13.g589100.t1.1 - - - - - - - - - Cre16.g655600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g15849.t1,Cre16.g655600.t1.1 - - - - - - - - - Cre02.g110700 - 0 16 1.0 1.0 0 16 1.0 1.0 O n - 11 - - g2272.t1 - - KOG4593 - - - AT5G65780.2 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) Cre09.g390171 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 13 - - g9661.t1,Cre02.g125450.t1.1,Cre02.g125450.t1.2 PF00069,PF07714 PTHR23257,PTHR23257:SF99 KOG1187 - - GO:0004672,GO:0005524,GO:0006468 AT2G17700.1 - ACT-like protein tyrosine kinase family protein Cre02.g103100 SDR5 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g2106.t1,SDR5 PF00106 PTHR24322:SF44,PTHR24322 KOG1205 - - GO:0008152,GO:0016491 AT3G03330.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre02.g094551 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g1788.t1 - - - - - - - - - Cre09.g388900 TEH10 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g9521.t1,Cre09.g388900.t1.1,TEH10 PF00975 PTHR11487 - - - GO:0009058,GO:0016788 - - - Cre12.g544752 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g13794.t1,Cre27.g774600.t1.1,Cre27.g774600.t1.2 PF00515 PTHR22904 - - - GO:0005515 AT3G17970.1 atToc64-III,TOC64-III translocon at the outer membrane of chloroplasts 64-III Cre16.g691215 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 1 - - g16873.t1,Cre01.g072550.t1.1,Cre01.g072550.t1.2, g16873.t2,Cre01.g072550.t2.1 PF05603 PTHR12925 KOG4067 - - - AT1G66080.1 - - Cre03.g203550 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 13 - - g4246.t3, g4246.t2, g4246.t1, g4246.t4 PF05686 PTHR12203 - - - - AT1G63420.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre17.g730150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g17645.t1 - PTHR10992,PTHR10992:SF209 - - - - - - - Cre11.g469450 CGL124 - 0 4 1.0 1.0 0 4 1.0 1.0 O Y - 7 - - g11784.t1 PF04683 PTHR12225 KOG3037 - - GO:0005634,GO:0005737 AT2G26590.1 RPN13 regulatory particle non-ATPase 13 Cre07.g315300 CSG4 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Predicted protein of CSG family Function unknown, no known homologue, except in Volvox; belongs to a small family of Chlamydomonas specific proteins, all located on chomosome VII (scaffolds 6 and 16) g7294.t1,Cre07.g315300.t1.1,CSG4 - - - - - - - - - Cre07.g330350 OPR115 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 1 - - g7688.t1 - - - - - - - - - Cre19.g751047 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 - - g18140.t1,Cre33.g782300.t1.1,Cre33.g782300.t1.2 - - - - - - - - - Cre10.g433900 - 0 15 1.0 1.0 0 15 1.0 1.0 M n - 17 - - g10703.t2, g10703.t1 PF00622,PF00632,PF01135 PTHR11254,PTHR11254:SF144 KOG0940 - - GO:0005515,GO:0005622,GO:0006464,GO:0016881,GO:0004719 AT1G55860.1 UPL1 ubiquitin-protein ligase 1 Cre06.g291200 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g6749.t1,Cre06.g291200.t1.1 PF09340 - - - - - AT4G14385.1 - - Cre03.g152300 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g3099.t1,Cre03.g152300.t1.1 - - - - - - - - - Cre09.g397993 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 14 Similar to Flagellar Associated Protein FAP201 Similar to Flagellar Associated Protein FAP201 that is found in the flagellar proteome [PMID: 15998802]. This gene models overlaps with FAP201 from v3 g9879.t1,Cre02.g135050.t2.1, g9879.t2,Cre02.g135050.t1.1 - PTHR24111,PTHR24111:SF37 - - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre10.g418800 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g10368.t1 PF00612 - - - - GO:0005515 AT2G20290.1 ATXIG,XIG myosin-like protein XIG Cre13.g562250 FAP92 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g13837.t1 - - - - - - - - - Cre03.g194700 AGL1 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 15 Alpha glucosidase Putative alpha-glucosidase (EC 3.2.1.20); similarity to arabidopsis [Aglu1; GenBank AAB82656] and sugar beet[GenBank BAA20343; PMID: 9178565] secreted alpha-glucosidase gene products g4032.t1,AGL1 PF00088,PF01055 PTHR22762:SF9,PTHR22762 - 3.2.1.20 K01187 GO:0004553,GO:0005975 AT1G68560.1 ATXYL1,TRG1,XYL1 alpha-xylosidase 1 Cre12.g523276 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g12886.t1 - - - - - - - - - Cre17.g711900 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 - - g17240.t1 PF03567 - - - - GO:0008146,GO:0016021 - - - Cre07.g356101 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 6 - - g8279.t1,Cre07.g356100.t1.3 - - - - - - - - - Cre01.g048900 GTF1 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 11 - - g1085.t1,GTF1 PF00439 PTHR22880:SF79,PTHR22880 - - - GO:0005515 AT3G01770.1 ATBET10,BET10 bromodomain and extraterminal domain protein 10 Cre13.g591450 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g14503.t1,Cre13.g591450.t1.1 PF01007 PTHR11767:SF34,PTHR11767 KOG3827 - K04995 GO:0005242,GO:0006813,GO:0016020 - - - Cre06.g252350 CGL70 - 0 1 1.0 nan 0 1 1.0 nan M Y - 1 Predicted protein Conserved expressed protein of unknown function g5650.t1,Cre06.g252350.t1.1, g5650.t2 PF12049 - - - - - AT5G08400.2 - Protein of unknown function (DUF3531) Cre07.g344150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8006.t1 PF10343 PTHR21314 KOG2524 - - - - - - Cre17.g728350 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g17605.t1 PF02469 - - - - - - - - Cre06.g257650 MSRA2 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 4 Peptide methionine-S-sulfoxide reductase - g5791.t1,Cre06.g257650.t1.1 PF01625 PTHR10173:SF4,PTHR10173 KOG1635 - - GO:0016671,GO:0019538,GO:0055114 AT4G25130.1 PMSR4 peptide met sulfoxide reductase 4 Cre17.g698903 - 0 26 1.0 1.0 0 26 1.0 1.0 C n - 17 - - g16952.t1,Cre17.g698903.t1.1 PF00989 PTHR10919:SF179,PTHR10919 - - - GO:0006355 - - - Cre07.g327976 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g7629.t1 - - - - - - - - - Cre17.g715950 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g17331.t1,Cre17.g715950.t1.1 PF04641 PTHR12775 KOG3113 - - - AT5G58020.1 - - Cre17.g704450 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 9 - - g17077.t1 PF01753 PTHR12298 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre07.g336350 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g7828.t1 PF00076 PTHR24011,PTHR24011:SF238 KOG0144 - - GO:0003676 AT4G34110.1 ATPAB2,PAB2,PABP2 poly(A) binding protein 2 Cre16.g659650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g15934.t1 - - - - - - - - - Cre03.g145947 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g2962.t1,Cre01.g060400.t1.1 - - - - - - - - - Cre09.g391912 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g9709.t1,Cre02.g127400.t1.1 - - - - - - - - - Cre13.g564151 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - - - - g13881.t1,Cre13.g564150.t1.3 - - - - - - - - - Cre12.g535050 - 0 17 1.0 1.0 0 17 1.0 1.0 M n downregulated 16 - - g13162.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre16.g691439 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g15653.t1,Cre16.g691439.t1.1 - - - - - - - - - Cre03.g189300 PLAP10,PLP10 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 11 Plastid lipid associated protein Conserved expressed protein related to plastid lipid associated protein PAP/fibrillin; Arabidopsis homologue is in plastoglobuli (PMID: 16461379). Previously annotated as PLAP10 g3920.t1,PLP10 PF04755 - - - - GO:0005198,GO:0009507 AT4G04020.1 FIB fibrillin Cre11.g482400 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g11976.t1,Cre11.g482400.t1.1 - - - - - - - - - Cre07.g314450 CGL33B,SMM22 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 4 S-adenosyl-L-methionine-dependent methyltransferase Conserved S-adenosyl-L-methionine-dependent methyltransferase; note linked homolog. Previously annotated as CGL33B g7275.t1,SMM22 - - - - - - AT5G44600.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre01.g056696 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 - - g1247.t1,Cre23.g767600.t1.1, g1247.t2,Cre23.g767600.t2.1 - - - - - - - - - Cre06.g251800 RFC4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 DNA replication factor C complex subunit 4 Homologous to eukaryotic RFC4 (DNA replication factor C complex subunit 4); accessory protein of DNA polymerase g5639.t1,Cre06.g251800.t1.1,RFC4 PF08542,PF00004 PTHR11669 KOG0989 - K10755 GO:0003689,GO:0005524,GO:0005663,GO:0006260 AT1G21690.1 EMB1968,RFC4 ATPase family associated with various cellular activities (AAA) Cre01.g025650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g588.t1,Cre01.g025650.t1.1 - - - - - - - - - Cre02.g102100 SMM5 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g2084.t1,SMM5 - - - - - - - - - Cre10.g421100 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g10422.t1 - - - - - - - - - Cre09.g410500 - 0 12 1.0 1.0 0 12 1.0 1.0 C n - 1 - - g10170.t2, g10170.t1 PF01909 PTHR23092 - - - GO:0016779 AT5G53770.1 - Nucleotidyltransferase family protein Cre11.g480800 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g11936.t1,Cre11.g480800.t1.1 PF04900 PTHR12416 KOG3164 - - - AT2G34570.1 MEE21 PIN domain-like family protein Cre03.g165186 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g3387.t1,Cre03.g165186.t1.1 - - - - - - - - - Cre07.g345200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g8033.t1 PF02541 - - - - - - - - Cre05.g248401 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g5165.t1, g5165.t2 - - - - - - - - - Cre19.g750147 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g18120.t1,Cre33.g783150.t1.1 - - - - - - - - - Cre12.g512000 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g12307.t1 PF00839 PTHR11884 - - K06816 GO:0016020 - - - Cre24.g755197 RBD3 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 4 Putative rubredoxin-like protein - g18251.t1,Cre05.g230400.t1.1,Cre05.g230400.t1.2,RBD3 - - - - - - AT5G51010.1 - Rubredoxin-like superfamily protein Cre24.g755397 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g18256.t1 - PTHR11062 - - - - AT3G57630.1 - exostosin family protein Cre03.g190200 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 - - g3938.t1,Cre03.g190200.t1.1 - - - - - - - - - Cre01.g055461 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g1237.t1,Cre23.g767900.t1.1,Cre23.g767900.t1.2 - - - - - - - - - Cre06.g300400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g6951.t1 - - - - - - AT1G73170.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre09.g400923 FAP28 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g9977.t1,Cre02.g138450.t1.1 - - - - - - - - - Cre17.g697150 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 11 - - g16907.t1,Cre17.g697150.t1.1 - - KOG3227 - - - AT4G13750.1 NOV Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein Cre01.g000600 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g15.t1,Cre01.g000600.t1.1 PF00400,PF08154 PTHR19848 KOG0271 - - - AT5G52820.1 - WD-40 repeat family protein / notchless protein, putative Cre03.g190850 ECH1 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 EnoylCoA hydratase/isomerase EnoylCoA hydratase/isomerase; most similar to animal isoforms, probably mitochondrial. Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g3950.t1,Cre03.g190850.t1.1,ECH1 PF00378 PTHR11941 KOG1680 5.3.3.8 K13238 GO:0003824,GO:0008152 AT4G16800.1 - ATP-dependent caseinolytic (Clp) protease/crotonase family protein Cre01.g005543 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g134.t1 - - - - - - - - - Cre06.g286150 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 - - g6650.t2, g6650.t1,Cre06.g286150.t1.1 - - - - - - - - - Cre13.g582100 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14292.t1,Cre13.g582100.t1.1 - - - - - - - - - Cre01.g032900 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g743.t2, g743.t3, g743.t1 - - - - - - - - - Cre03.g205701 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 16 - - g4197.t2, g4197.t1,Cre03.g205701.t1.1 - PTHR12948:SF1,PTHR12948 - - - - - - - Cre05.g248200 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 18 - - g5168.t1 PF01764 - - - - GO:0004806,GO:0006629 AT3G61680.1 - alpha/beta-Hydrolases superfamily protein Cre07.g317908 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 8 - - g7350.t1,Cre07.g317908.t1.1 - PTHR13682,PTHR13682:SF11 - - - - AT5G50340.1 - ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases Cre10.g428706 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g10589.t1,Cre69.g794100.t1.1 - - - - - - - - - Cre17.g738400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g17860.t1,Cre17.g738400.t1.1 - - - - - - - - - Cre12.g521250 PPE1 - 0 10 1.0 1.0 0 10 1.0 1.0 O n downregulated 9 Putative mitochondrial ribosomal protein, Ppe1 homolog Putative mitochondrial ribosomal protein Ppe1, imported to mitochondria g12841.t1,Cre12.g521250.t1.1,PPE1 - PTHR14189 KOG2564 3.1.1.- K13617 - AT4G10050.1 - esterase/lipase/thioesterase family protein Cre12.g547050 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g13612.t1,Cre12.g547050.t1.1 - - - - - - - - - Cre08.g385800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g9077.t1 - - - - - - - - - Cre08.g379550 MFT11,PHT4 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated 2 Sodium-dependent phosphate transporter, major facilitator superfamily Na+-dependent inorganic phosphate cotransporter. Previously annotated as MFT11 g8935.t2,MFT11,PHT4, g8935.t1,MFT11,PHT4 PF07690 PTHR11662:SF23,PTHR11662 KOG2532 - - GO:0016021,GO:0055085 AT2G29650.1 ANTR1,PHT4;1 phosphate transporter 4;1 Cre11.g475750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g11818.t1 PF04187 - - - - - - - - Cre03.g203700 DEG12,DEGO1,DEGO - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 DegP-type protease-like protein Similar to serine proteases/chaperones of the trypsin-like DegP family (HtrA) (protease Do) but lacks all three catalytic residues: H>A95, D>E126, S>L235 (confirmed in Volvox homolog); this proteolytically inactive protein could interact with its paralog g4243.t1,DEG12,DEGO1 - - - - - - - - - Cre07.g343200 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g7983.t1,Cre07.g343200.t1.1 PF00027 PTHR10217:SF29,PTHR10217 - - - - - - - Cre10.g462000 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g11326.t2, g11326.t1 - PTHR12406:SF23,PTHR12406 - - - - - - - Cre08.g366900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g8598.t1,Cre08.g366900.t1.1 - - - - - - - - - Cre01.g031450 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g711.t1,Cre01.g031450.t1.1 - - - - - - - - - Cre01.g018900 - 0 12 1.0 1.0 0 12 1.0 1.0 O n upregulated 2 - - g444.t1,Cre01.g018900.t1.1 PF05773,PF01485 PTHR11685,PTHR11685:SF61 KOG1814 6.3.2.19 K11971 GO:0005515,GO:0008270 AT1G32340.1 NHL8 NDR1/HIN1-like 8 Cre05.g233300 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 1 - - g5107.t1,Cre05.g233300.t1.1 PF00590 PTHR10882 KOG3123 2.1.1.98 K00586 GO:0008152,GO:0008168,GO:0004164,GO:0017183 AT4G31790.1 - Tetrapyrrole (Corrin/Porphyrin) Methylases Cre12.g524850 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 15 - - g12920.t1, g12920.t2, g12920.t3, g12920.t4 - - - - - - - - - Cre05.g233304 CHI3 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g5109.t1,CHI3 PF00704 PTHR11177 KOG2806 3.2.1.14 K01183 GO:0004553,GO:0005975 AT4G19810.1 - Glycosyl hydrolase family protein with chitinase insertion domain Cre05.g233305 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 6 - - g5110.t2,Cre05.g233150.t2.1, g5110.t1,Cre05.g233150.t1.3 PF08338,PF01370 PTHR11092 KOG3019 - K07071 GO:0003824,GO:0044237,GO:0050662 AT2G21280.1 ATSULA,GC1,SULA NAD(P)-binding Rossmann-fold superfamily protein Cre12.g505151 - 0 1 1.0 nan 0 1 1.0 nan - n - 10 - - g12465.t1,Cre12.g505137.t1.2 - - - - - - - - - Cre12.g505150 OPR52 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g12464.t1 - - - - - - - - - Cre10.g450950 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g11083.t1,Cre10.g450950.t1.1 - - - - - - - - - Cre03.g160800 MTP2 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - Cation efflux transporter, membrane protein Putative Mn transporter, CDF family, related to plant Mn transporters, PMID: 15710683 g3294.t1,Cre03.g160800.t1.1 PF01545 PTHR11562 KOG1485 - - GO:0006812,GO:0008324,GO:0016021,GO:0055085 AT1G79520.2 - Cation efflux family protein Cre17.g733200 SRR4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g17720.t1,SRR4 PF00530 PTHR25932:SF19,PTHR25932 - - - GO:0005044,GO:0016020 - - - Cre16.g683050 RNJ1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 RNase J-like protein Candidate chloroplastic ribonuclease J (RNase J), which has both RNase E-like endoribonuclease and 5\'-3\' exoribonuclease activity. In Chlamydomonas, an alternate splice variant in the C-terminal region has been observed. g16441.t1,RNJ1 PF00753,PF07521 PTHR11203:SF24,PTHR11203 KOG1136 - - GO:0016787 AT5G63420.1 emb2746 RNA-metabolising metallo-beta-lactamase family protein Cre09.g389652 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9647.t1,Cre02.g124750.t1.1,Cre02.g124750.t1.2 - - - - - - AT2G28910.1 CXIP4 CAX interacting protein 4 Cre09.g389650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g9504.t1 PF07714 PTHR26391,PTHR26391:SF393 KOG0192 - - GO:0004672,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre05.g236878 NAT15 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g5449.t1,Cre05.g236900.t1.3,NAT15 PF00583 - - - - GO:0008080,GO:0008152 - - - Cre12.g497350 PPR13 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g12638.t1 - - - - - - AT3G04260.1 PTAC3 plastid transcriptionally active 3 Cre02.g105350 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 15 - - g2160.t1,Cre02.g105350.t1.1 PF03619 PTHR23423 KOG2641 - - - AT1G23070.1 - Protein of unknown function (DUF300) Cre03.g175550 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 14 - - g3624.t1 - - - - - - - - - Cre26.g756747 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g18292.t1,Cre59.g791750.t1.1,Cre59.g791750.t1.2 - - - - - - - - - Cre06.g275350 ROC40 - 0 10 1.0 1.0 0 10 1.0 1.0 M n - 18 - - g6174.t1,ROC40 PF00249 PTHR12802:SF3,PTHR12802 KOG0048 - K12134 - AT1G01060.1 LHY,LHY1 Homeodomain-like superfamily protein Cre12.g486208 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 14 - - g12273.t1,Cre12.g486200.t1.3 - - - - - - - - - Cre12.g486207 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g12272.t1,Cre12.g486207.t1.1 - - - - - - - - - Cre06.g282100 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6561.t1,Cre06.g282100.t1.1 - - - - - - - - - Cre13.g605250 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g14598.t1 - - - - - - - - - Cre08.g382575 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g9004.t1 - - - - - - - - - Cre01.g036100 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 10 - - g812.t1 PF00400 PTHR22852 KOG0271 - K11790 - AT3G27640.1 - Transducin/WD40 repeat-like superfamily protein Cre05.g234654 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5373.t1,Cre24.g769250.t1.1 PF00023,PF04564 PTHR22849 KOG0502 - - GO:0005515,GO:0000151,GO:0004842,GO:0016567 AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre05.g234657 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 1 - - g5376.t1,Cre24.g769100.t1.1,Cre24.g769100.t1.2 PF01300,PF03481 PTHR17490 KOG3051 - K07566 - AT5G60590.2 - DHBP synthase RibB-like alpha/beta domain Cre05.g234656 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5375.t1,Cre24.g769150.t1.1 PF00069,PF07714 PTHR23257,PTHR23257:SF99 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre05.g234651 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g5370.t1,Cre24.g769400.t1.1, g5370.t2,Cre24.g769400.t2.1 PF01263 PTHR11122:SF9,PTHR11122 - - - GO:0005975,GO:0016853 AT5G66530.1 - Galactose mutarotase-like superfamily protein Cre05.g234650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5388.t1,Cre05.g234650.t1.1 - - - - - - - - - Cre05.g234653 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g5372.t1,Cre24.g769300.t1.1,Cre24.g769300.t1.2 - - - - - - - - - Cre06.g302000 MFP1 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g6989.t1,MFP1, g6989.t2,MFP1 PF05977 PTHR24003,PTHR24003:SF386 - - - - - - - Cre03.g181300 SHKG1,SHK6 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 5-enolpyruvylshikimate-3-phosphate synthase 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase (EC 2.5.1.19); predicted as mitochondrial by Target-P, but expected to be plastidic by homology. Catalyzes the sixth and penultimate step of the shikimate pathway (PMID: 12242393; PMID: 16963634). This g3757.t1,Cre03.g181300.t1.1,SHK6,SHKG1 PF00275 PTHR21090,PTHR21090:SF3 KOG0692 2.5.1.19 K00800 GO:0016765 AT2G45300.1 - RNA 3\'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta Cre12.g511650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g12316.t1 - PTHR23172 KOG0431 - - - AT1G21660.1 - Chaperone DnaJ-domain superfamily protein Cre17.g727550 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 15 - - g17589.t1 - - - - - - - - - Cre08.g362100 FAL11 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 14 Similar to Flagellar Associated Protein FAP154 Similar to Flagellar Associated Protein FAP154 with PAS sensory domain that was found in the flagellar proteome [PMID: 15998802]. This may be a duplication of FAP154; overlaps FAP154 gene model from v3 g8481.t1,FAL11 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre10.g426700 CYP28,CYP739A4 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 10 Cytochrome P450, CYP197 superfamily Cytochrome P450, CYP197 superfamily, CYP197B family. The CYP85 clan families CYP85 and CYP90 make brassinosteroids in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols. Previously annotated as CYP739A4 g10544.t1,CYP28 PF00067 - KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT2G32440.1 ATKAO2,CYP88A4,KAO2 ent-kaurenoic acid hydroxylase 2 Cre16.g694450 DNJ36 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 DnaJ-like protein - g15582.t1,Cre16.g694450.t1.1,DNJ36 PF00226 PTHR24077,PTHR24077:SF97 - - - GO:0031072 AT4G39960.1 - Molecular chaperone Hsp40/DnaJ family protein Cre09.g395695 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 9 - - g9816.t1,Cre02.g132250.t1.1 PF00069 PTHR24055,PTHR24055:SF166 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT1G67580.1 - Protein kinase superfamily protein Cre18.g750047 FMG1-A - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 Flagella membrane glycoprotein, minor form Flagella membrane glycoprotein, minor form. Does not appear to be expressed in Chlamydomonas. Previously annotated as FMG1-1 in v3 (causing much confusion) but changed back to FMG1-A; belongs on chr9. This gene model is longer than Genbank entry AY2067 g18117.t1,Cre31.g780700.t1.1,FMG1-A - - - - - - - - - Cre06.g270450 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 10 - - g6068.t1 - - - - - - - - - Cre12.g537900 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g13227.t1 PF11927 PTHR22915 - - - - - - - Cre06.g278302 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6467.t2, g6467.t1 PF03372,PF00078 PTHR19446 - - - GO:0003723,GO:0003964,GO:0006278 - - - Cre03.g177950 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 10 - - g3681.t1 - - KOG4593 - - - - - - Cre16.g664850 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g16049.t1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G79570.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre08.g386050 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g9083.t1,Cre08.g386050.t1.1 PF00627 - KOG4463 - - GO:0005515 AT3G56740.1 - Ubiquitin-associated (UBA) protein Cre17.g703932 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g17065.t1,Cre17.g703932.t1.1 - - - - - - - - - Cre12.g494650 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g12055.t1 - - - - - - - - - Cre09.g392319 VSP6 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 18 Hydroxyproline-rich cell wall protein Hydroxyproline rich glycoprotein Vsp6; (SP)n-repeats, extracellular matrix protein (cell wall protein); resembles VSP4 [PMID: 7689882, Genbank AF382191] g9721.t1,Cre02.g128000.t1.1,Cre02.g128000.t1.2,VSP6 PF05572 - - - - - - - - Cre13.g603000 PDE19 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - 3\',5\'-cyclic-nucleotide phosphodiesterase 3\',5\'-cyclic-nucleotide phosphodiesterase similar to that of Homo sapiens, PDE4D_HUMAN g14542.t2,Cre13.g603000.t1.1,PDE19, g14542.t1,PDE19 PF00233 PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre16.g652650 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g15784.t1 - - - - - - - - - Cre06.g266276 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g5977.t1 - - - - - - - - - Cre01.g000033 - 0 1 1.0 nan 0 1 1.0 nan M n - 18 - - g3.t1 - - - - - - - - - Cre16.g695850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 11 - - g15551.t1,Cre16.g695850.t1.1 - - - - - - - - - Cre16.g695851 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g15552.t1,Cre16.g695844.t1.2 - PTHR13069:SF9,PTHR13069 - - - - AT4G02485.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre01.g024900 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 9 - - g572.t1 PF00076 PTHR24011,PTHR24011:SF180 KOG4725 - - GO:0003676 AT1G21320.2 - nucleotide binding;nucleic acid binding Cre03.g197700 HLM8 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 10 - - g4095.t1,Cre03.g197700.t1.1,HLM8 PF00855,PF05964,PF05965,PF00856 PTHR13793,PTHR13793:SF28 - - - GO:0003677,GO:0005634,GO:0005515 AT1G05830.1 ATX2,SDG30 trithorax-like protein 2 Cre12.g550900 SSD3 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 18 Sterol sensing domain protein Sterol sensing domain protein similar to Arabidopsis protein and similar to Niemann-Pick disease protein g13527.t1,Cre12.g550900.t1.1,SSD3 PF02460,PF12349 PTHR10796:SF35,PTHR10796 KOG1933 - K12385 GO:0008158,GO:0016020 AT1G42470.1 - Patched family protein Cre03.g182650 PGA1 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3786.t1,Cre03.g182650.t1.1,PGA1 PF01553 PTHR12497 KOG2847 - - GO:0008152,GO:0008415 AT3G05510.2 - Phospholipid/glycerol acyltransferase family protein Cre17.g726600 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g17569.t3,Cre17.g726600.t1.1, g17569.t2, g17569.t1 PF03372,PF00078 PTHR13078,PTHR13078:SF14 KOG1995 - - GO:0003723,GO:0003964,GO:0006278 - - - Cre06.g286900 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g6665.t1 - - - - - - - - - Cre08.g372850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 - - g8732.t1,Cre08.g372850.t1.1 PF03367 PTHR10876 - - - GO:0008270 AT5G22480.1 - ZPR1 zinc-finger domain protein Cre06.g271500 - 0 3 1.0 1.0 0 3 1.0 1.0 - n - - - - g6092.t1,Cre06.g271500.t1.1 - - - - - - - - - Cre12.g529250 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 17 - - g13031.t1 PF05572 - - - - - - - - Cre03.g190950 TUA1 - 1 47 1.0 1.0 1 47 1.0 1.0 O n - 11 Alpha tubulin 1 - g3952.t1,Cre03.g190950.t1.1 PF03953,PF00091 PTHR11588 KOG1376 - K07374 GO:0003924,GO:0005525,GO:0006184,GO:0043234,GO:0051258,GO:0005874,GO:0007017 AT1G50010.1 TUA2 tubulin alpha-2 chain Cre12.g552500 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g13488.t1,Cre12.g552500.t1.1 - - - - - - AT3G02860.2 - zinc ion binding Cre01.g035950 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 6 - - g809.t1 PF01740,PF00027,PF00916 - - - - GO:0005215,GO:0006810,GO:0016021,GO:0055085 - - - Cre12.g521000 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 3 - - g12836.t1 - - - - - - - - - Cre08.g385650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9073.t1,Cre08.g385650.t1.1 PF00069 PTHR24056,PTHR24056:SF109 KOG0594 - - GO:0004672,GO:0005524,GO:0006468 AT3G48750.1 CDC2,CDC2A,CDC2AAT,CDK2,CDKA1,CDKA;1 cell division control 2 Cre09.g414850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g10272.t1, g10272.t2 - PTHR10668:SF7,PTHR10668 - - - - - - - Cre16.g662200 CYA14 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 7 - - g15991.t1,CYA14 PF01928 - - - - GO:0006796 AT2G11890.1 - adenylate cyclases Cre13.g571750 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g14060.t1,Cre13.g571750.t1.1 PF02815 PTHR10050:SF6,PTHR10050 KOG3358 - - GO:0016020 AT2G25110.1 AtSDF2,ATSDL,SDF2 stromal cell-derived factor 2-like protein precursor Cre17.g746297 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g18042.t1,Cre20.g758800.t1.1,Cre20.g758800.t1.2 PF01753 PTHR23151:SF8,PTHR23151 - - - GO:0008270 - - - Cre12.g528250 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 14 - - g13009.t1 - - - - - - - - - Cre12.g503250 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g12505.t1,Cre12.g503250.t1.1 - - - - - - - - - Cre17.g708100 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 1 - - g17157.t1,Cre17.g708100.t1.1 PF00156 PTHR22573,PTHR22573:SF9 KOG3367 - - GO:0009116 AT1G71750.1 HGPT Hypoxanthine-guanine phosphoribosyltransferase Cre17.g728650 FAP196 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 11 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation g17611.t1 PF00400 PTHR22847:SF52,PTHR22847 KOG0319 - - - AT3G21540.1 - transducin family protein / WD-40 repeat family protein Cre01.g013900 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g340.t2, g340.t1 - - - - - - - - - Cre01.g050750 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g1124.t1 - - - - - - - - - Cre09.g394250 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g9403.t1,Cre09.g394250.t1.1 - - - - - - - - - Cre09.g394251 PF16 - 0 17 1.0 1.0 0 17 1.0 1.0 O n - 12 Central pair associated protein - g9777.t1,Cre02.g130400.t1.1,Cre02.g130400.t1.2,PF16 PF00514 PTHR23314 KOG0166 - - GO:0005515 AT4G02150.1 ATIMPALPHA3,IMPA-3,MOS6 ARM repeat superfamily protein Cre01.g038050 COP - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated - - - g852.t1,COP PF00512,PF00072,PF01036,PF02518 PTHR24423 - - - GO:0000155,GO:0007165,GO:0016020,GO:0000156,GO:0000160,GO:0006355,GO:0005216,GO:0006811,GO:0005524 AT2G17820.1 AHK1,ATHK1,HK1 histidine kinase 1 Cre02.g087000 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 16 - - g1614.t1 PF01753 - - - - GO:0008270 - - - Cre10.g463150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 16 - - g11350.t1 PF00378 PTHR11941 KOG1681 5.3.3.- K12663 GO:0003824,GO:0008152 AT5G43280.1 ATDCI1,DCI1 delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 Cre09.g388350 MMP11,RAT2 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 Metalloproteinase of VMP family Belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoprotein g9534.t1,MMP11,RAT2 PF05548 - - - - - - - - Cre09.g388352 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g9536.t1 - - - - - - - - - Cre17.g696450 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 14 - - g16893.t1 - PTHR23315:SF7,PTHR23315 - - - - AT5G58680.1 - ARM repeat superfamily protein Cre01.g039900 TRZ4 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 RNase Z-like protein Similarity to RNase Z, beta-lactamase family protein g891.t1,Cre01.g039900.t1.1,TRZ4 PF00753 PTHR12553:SF3,PTHR12553 KOG2121 3.1.26.11 K00784 GO:0016787 AT3G16260.1 TRZ4 tRNAse Z4 Cre13.g564450 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g13887.t1 PF03016 PTHR24349,PTHR24349:SF13 - - - GO:0016020 - - - Cre01.g066552 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Thioredoxin f1 Thioredoxin f1, chloroplast precursor [Lemaire et al (2003) Plant Physiol. Biochem. 41, 513-521]. Involved in the activation by light of carbon metabolism enzymes, including calvin cycle enzymes. Probably regulated by glutathionylation [PMID: 16263928]. g1274.t1,Cre23.g766300.t1.1,Cre23.g766300.t1.2 PF00085 PTHR10438:SF15,PTHR10438 KOG0907 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT3G02730.1 ATF1,TRXF1 thioredoxin F-type 1 Cre09.g389400 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 14 - - g9510.t1 PF03486 PTHR22912:SF38,PTHR22912 - - K07007 - AT5G39940.1 - FAD/NAD(P)-binding oxidoreductase family protein Cre03.g172200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3549.t1 PF00400 PTHR14107 - - - - AT3G53390.1 - Transducin/WD40 repeat-like superfamily protein Cre09.g391753 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 16 - - g9457.t1,Cre09.g391753.t1.1 - - - - - - - - - Cre05.g240533 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g5547.t1,Cre05.g240533.t1.1 PF01485 PTHR24985,PTHR24985:SF15 - - - GO:0008270 AT4G19670.1 - RING/U-box superfamily protein Cre01.g020100 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g467.t1 - - - - - - - - - Cre12.g551977 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g13811.t1,Cre27.g775250.t1.1 PF12499 - - - - - - - - Cre06.g284050 TF2F,TAF1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Transcription activation factor, putative SWR-C component Transcription activation factor. Contains a YEATS domain, similar to rice putative TAF14b. ChromoDB YDG3401. Homolog of yeast YAF9, involved in transcriptional regulation as part of the chromatin remodeling complex, SWR-C (see PMID: 14690608); may inte g6605.t1,Cre06.g284050.t1.1,TAF1,TF2F PF03366 PTHR23195 - - K11341 GO:0005634,GO:0006355 AT5G45600.1 GAS41,TAF14B YEATS family protein Cre09.g400590 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 17 - - g9967.t1,Cre02.g137950.t1.1 - - - - - - - - - Cre05.g240650 DNJ32 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 2 DnaJ-like protein DnaJ-like protein; contains N-terminal J-domain (pfam00226); weak homology with Dictyostelium Q54LL9 and Brachydanio rerio Q6PGY5, which is considered to be a nuclear, Zn-ion-binding, nucleic acid binding protein g5550.t1,Cre05.g240650.t1.1 PF12171,PF00226 PTHR24078:SF10,PTHR24078 KOG0717 - K09506 GO:0031072 AT1G74250.1 - DNAJ heat shock N-terminal domain-containing protein Cre16.g649200 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 10 - - g15709.t1,Cre16.g649200.t1.1 PF04755 - - - - GO:0005198,GO:0009507 AT3G26080.1 - plastid-lipid associated protein PAP / fibrillin family protein Cre02.g141066 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g2687.t4, g2687.t2, g2687.t3, g2687.t1 - - - - - - - - - Cre08.g365900 LHCSR1 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 5 Stress-related chlorophyll a/b binding protein 1 LI818r-1, stress-related chlorophyll a/b binding protein LhcSR1; Low-CO2 and high-light inducible chlorophyll a/b binding protein, possibly related to photoprotection; regulated by CCM1 [PMID: 15235119]. Acclimation to changing CO2 concentrations and ligh g8574.t1,Cre08.g365900.t1.1 PF00504 PTHR21649 - - - GO:0009765,GO:0016020 AT1G29930.1 AB140,CAB1,CAB140,LHCB1.3 chlorophyll A/B binding protein 1 Cre09.g386600 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g9109.t2, g9109.t1 - - - - - - - - - Cre02.g080250 YLMG1 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g1466.t1,Cre02.g080250.t1.1 PF02325 - - - - GO:0016020 AT4G27990.1 ATYLMG1-2,YLMG1-2 YGGT family protein Cre10.g434350 CTR2 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 5 CTR type copper ion transporter CTR type copper ion transporter; fits the pattern for TM2 and TM3: MxxxM-X13-GxxxG per Vinzenz Unger. Characterized by Page et al. 2009 [PMID: 19318609]. g10713.t1 PF04145 PTHR12483:SF9,PTHR12483 KOG3386 - - GO:0005375,GO:0016021,GO:0035434 - - - Cre12.g507200 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 1 - - g12418.t1 PF04564 PTHR22849 - - - GO:0000151,GO:0004842,GO:0016567 AT1G24330.1 - ARM repeat superfamily protein Cre12.g500250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g12571.t1,Cre12.g500250.t1.1 - - - - - - - - - Cre16.g676537 - 0 1 1.0 nan 0 1 1.0 nan C n - 3 - - g16585.t1 - - - - - - - - - Cre09.g387550 CGL142 - 0 5 1.0 1.0 0 5 1.0 1.0 O Y - 8 - - g9553.t1 - PTHR23083,PTHR23083:SF209 - - - - AT5G41950.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre12.g507800 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 5 - - g12402.t1,Cre12.g507800.t1.1 - - - - - - - - - Cre15.g639056 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g15381.t1 PF00856 PTHR12197 - - - GO:0005515 AT1G26760.1 ATXR1,SDG35 SET domain protein 35 Cre09.g407900 RRM8 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g10111.t1,Cre09.g407900.t1.1,RRM8 PF10672 PTHR11061,PTHR11061:SF11 - - - - AT1G54310.2 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre12.g508850 GST8 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 4 - - g12375.t1,GST8 PF00043 PTHR11260,PTHR11260:SF27 KOG0867 - - - AT5G16710.1 DHAR3 dehydroascorbate reductase 1 Cre13.g577750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g14195.t1 - - - - - - - - - Cre12.g551352 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g13518.t1 - PTHR10742,PTHR10742:SF48 - - - - - - - Cre12.g551353 LAO1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g13519.t1,Cre12.g551300.t1.2 - PTHR10742,PTHR10742:SF48 - - - - - - - Cre16.g669450 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 6 - - g16241.t1 - - - - - - AT1G35340.1 - ATP-dependent protease La (LON) domain protein Cre07.g315850 - 0 7 1.0 1.0 0 7 1.0 1.0 O n upregulated 14 - - g7306.t1 - - - - - - - - - Cre12.g540850 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g13759.t1 - - - - - - - - - Cre06.g275500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g6177.t1,Cre06.g275500.t1.1 PF00847 - - - - GO:0003700,GO:0006355 AT1G72360.1 HRE1 Integrase-type DNA-binding superfamily protein Cre01.g023450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g541.t1,Cre01.g023450.t1.1 - - - - - - - - - Cre06.g278159 CON1 - 0 6 1.0 1.0 0 6 1.0 1.0 SP Y upregulated 6 CONSTANS-like protein involved in circadian rhythms B-box zinc finger protein; contains CONSTANS-type zinc finger, conserved in Ostreococcus and involved in circadian rhythms. Previously annotated as CGLD18 for being conserved in the Green lineage and diatoms, as well as CO for CONSTANS by Serrano et al. g6302.t1,Cre13.g596300.t1.1,Cre13.g596300.t1.2,CON1 PF00643,PF06203 - - - - GO:0005622,GO:0008270,GO:0005515 AT2G24790.1 ATCOL3,COL3 CONSTANS-like 3 Cre06.g278158 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g6301.t1 PF00188 PTHR10334 - - - - AT4G33730.1 - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Cre06.g268800 FAP60,FLA17,IFT139 - 0 20 1.0 1.0 0 20 1.0 1.0 O n - 14 Intraflagellar transport protein 139 Conserved Flagellar Associated Protein, previously identified as FAP60; ; found in the flagellar proteome [PMID: 15998802]; Iomini et al. [PMID: 19720863] identified this protein as IFT139, corresponding to the FLA17 locus; see also [PMID: 9585417; PMID: g6030.t1,Cre06.g268800.t1.1,FAP60,FLA17 - PTHR14699 - - - - - - - Cre06.g278151 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g6295.t1,Cre13.g596000.t1.1 PF08423 PTHR22942,PTHR22942:SF24 KOG1564 - - - AT5G57450.1 ATXRCC3,XRCC3 homolog of X-ray repair cross complementing 3 (XRCC3) Cre06.g278150 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g6468.t1 - - - - - - - - - Cre06.g278153 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 10 - - g6297.t1,Cre13.g596050.t1.1 PF05548 - - - - - - - - Cre06.g278152 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 10 - - g6296.t1,Cre13.g596016.t1.1,Cre13.g596016.t1.2 PF05548 - KOG0487 - - - - - - Cre06.g278154 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g6298.t1,Cre13.g596100.t1.1,Cre13.g596100.t1.2 PF09418 - - - - - - - - Cre17.g729350 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 16 - - g17627.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre03.g157800 TRX2,TRXL1 - 0 4 1.0 1.0 0 4 1.0 1.0 M Y - 6 Thioredoxin-like protein Conserved expressed thioredoxin-like protein, unusual active site WCNAC g3230.t1,TRX2,TRXL1 PF00085 PTHR10438:SF7,PTHR10438 KOG0907 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT4G29670.1 ACHT2 atypical CYS HIS rich thioredoxin 2 Cre09.g404450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 - - g9170.t1 PF00153 PTHR24089,PTHR24089:SF87 KOG0752 - - - AT5G64970.1 - Mitochondrial substrate carrier family protein Cre09.g396800 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g9350.t1 - - - - - - - - - Cre17.g721400 - 0 1 1.0 nan 0 1 1.0 nan C n - 18 - - g17454.t1 - - - - - - - - - Cre12.g519651 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g12807.t1 - - - - - - - - - Cre09.g396809 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 12 - - g9847.t1,Cre02.g133600.t1.1,Cre02.g133600.t1.2 - - - - - - - - - Cre17.g743797 FMO8 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 16 Flavin-containing monooxygenase Uses NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification g17991.t1,Cre20.g760850.t1.1,FMO8 PF00743 PTHR23023,PTHR23023:SF19 KOG1399 - - GO:0004499,GO:0050660,GO:0050661,GO:0055114 AT1G19250.1 FMO1 flavin-dependent monooxygenase 1 Cre03.g155400 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g3168.t1,Cre03.g155400.t1.1 - - - - - - - - - Cre12.g550750 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g13530.t1,Cre12.g550750.t1.1 PF03937 PTHR12469,PTHR12469:SF1 - - - - AT5G51040.1 - - Cre14.g616050 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g14842.t1 PF00169 - - - - GO:0005515 AT5G05710.1 - Pleckstrin homology (PH) domain superfamily protein Cre12.g531600 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 - - g13082.t1,Cre12.g531600.t1.1 PF11735 - - - - - - - - Cre12.g536650 - 0 17 1.0 1.0 0 17 1.0 1.0 O n - 12 - - g13196.t1,Cre12.g536650.t1.1 - - - - - - - - - Cre12.g554450 - 0 11 1.0 1.0 0 11 1.0 1.0 O n upregulated 2 - - g13444.t1, g13444.t2, g13444.t3, g13444.t4 - - - - - - - - - Cre16.g651250 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 18 - - g15754.t1,Cre16.g651250.t1.1 - - - - - - - - - Cre01.g001100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g25.t1,Cre01.g001100.t1.1 - - - - - - - - - Cre10.g446650 HEL46,MER - 0 14 1.0 1.0 0 14 1.0 1.0 M Y - - DEAD/DEAH box family ATP dependent DNA helicase DEAD/DEAH box family ATP dependent DNA helicase. Conserved protein with DEAD/DEAH box helicase domain related to MER3. Previously annotated as MER g10988.t1,HEL46,MER PF00271,PF02889,PF00270 PTHR11752,PTHR11752:SF4 KOG0952 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT3G27730.1 MER3,RCK ATP binding;ATP-dependent helicases;DNA helicases Cre16.g663250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g16012.t2, g16012.t1 - - - - - - - - - Cre14.g611700 PLAP8,PLP8 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 12 Plastid lipid associated protein Conserved expressed protein related to plastid lipid associated protein PAP/fibrillin; Arabidopsis homologue is in plastoglobuli (PMID: 16461379). Previously annotated as PLAP8 g14743.t1,PLP8 PF04755,PF01476 - KOG4744 - - GO:0005198,GO:0009507,GO:0016998 AT4G04020.1 FIB fibrillin Cre01.g011350 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g283.t1,Cre01.g011350.t1.1 PF04719 PTHR13218,PTHR13218:SF8 KOG3219 - K03135 GO:0003702,GO:0005634,GO:0006367 AT4G20280.1 TAF11 TBP-associated factor 11 Cre13.g571560 - 0 1 1.0 nan 0 1 1.0 nan C n - 3 - - g14055.t1,Cre13.g571551.t1.2 PF09737 PTHR13374:SF1,PTHR13374 KOG2558 - - - AT4G10180.1 ATDET1,DET1,FUS2 light-mediated development protein 1 / deetiolated1 (DET1) Cre12.g546452 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 16 - - g13798.t1,Cre27.g774750.t1.1 PF05686 PTHR12203,PTHR12203:SF14 - - - - AT1G63420.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre12.g546450 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 13 - - g13626.t1 - PTHR12472 - - - - AT3G14910.1 - - Cre06.g278244 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 - - g6386.t1,Cre13.g600600.t1.1,Cre13.g600600.t1.2 PF00156 PTHR11776 KOG1712 - - GO:0009116 - - - Cre03.g202113 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g4385.t1,Cre19.g752750.t1.1,Cre19.g752750.t1.2 PF01259 PTHR11609,PTHR11609:SF1 KOG2835 6.3.2.6 K01923 GO:0004639,GO:0006164 AT3G21110.1 ATPURC,PUR7,PURC purin 7 Cre17.g728400 - 0 15 1.0 1.0 0 15 1.0 1.0 O n - 9 - - g17606.t1, g17606.t2 PF01061 PTHR19241,PTHR19241:SF10 KOG0065 - - GO:0016020 AT2G29940.1 ATPDR3,PDR3 pleiotropic drug resistance 3 Cre34.g759147 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g18354.t1,Cre06.g277900.t1.1,Cre06.g277900.t1.2 - - - - - - - - - Cre09.g403108 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g10036.t1,Cre02.g120650.t1.1 PF03133 PTHR12241,PTHR12241:SF25 KOG2156 - - GO:0004835,GO:0006464 AT1G77550.1 - tubulin-tyrosine ligases;tubulin-tyrosine ligases Cre07.g352800 - 0 5 1.0 1.0 0 5 1.0 1.0 M n upregulated 2 - - g8205.t1,Cre07.g352800.t1.1 - - - - - - AT1G07910.1 ATRNL,RNL RNAligase Cre13.g566600 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - - - g13942.t1 - - - - - - - - - Cre07.g337350 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 9 - - g7849.t1 PF05686 PTHR12203 - - - - - - - Cre06.g269865 SMM18 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g6055.t1,Cre06.g269865.t1.1,SMM18, g6055.t2,SMM18, g6055.t3,SMM18 PF00535 - - - - - - - - Cre03.g154750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g3154.t1,Cre03.g154750.t1.1 - - - - - - - - - Cre03.g175800 RRM16 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 - - g3631.t1 PF04452 - - - - GO:0006364,GO:0008168 AT1G50000.1 - methyltransferases Cre07.g328900 CDPK9 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g7648.t1,Cre07.g328900.t1.1,CDPK9 PF00069,PF00036 PTHR24349:SF13,PTHR24349 KOG0032 2.7.11.1 K13412 GO:0004672,GO:0005524,GO:0006468 AT5G12180.1 CPK17 calcium-dependent protein kinase 17 Cre12.g530550 KDG2 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 7 Diacylglycerol kinase Similar to sphingosine kinase type 2 from Bos taurus XP_612394.2 g13059.t1,KDG2 PF00781 PTHR12358,PTHR12358:SF23 KOG1116 2.7.1.91 K04718 GO:0004143,GO:0007205 AT4G21540.1 SPHK1 sphingosine kinase 1 Cre11.g467751 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g11680.t1,Cre22.g764200.t1.1,Cre22.g764200.t1.2 PF00850 PTHR10625,PTHR10625:SF28 - - - - AT5G63110.1 ATHDA6,AXE1,HDA6,RPD3B,RTS1,SIL1 histone deacetylase 6 Cre11.g467753 HMO2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 Heme oxygenase Heme oxygenase; HMOX; HO; Catalyzes the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide; Involved in the synthesis g11682.t1,Cre22.g764100.t1.1,HMO2 PF01126 PTHR10720,PTHR10720:SF0 - - - GO:0004392,GO:0006788,GO:0055114 - - - Cre11.g467752 - 0 13 1.0 1.0 0 13 1.0 1.0 O n upregulated 10 - - g11681.t1,Cre22.g764150.t1.1,Cre22.g764150.t1.2 - - - - - - AT4G26240.1 - - Cre11.g467755 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 10 - - g11684.t1,Cre22.g764000.t1.1 PF05368 PTHR15020 KOG4039 - - - AT2G34460.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre12.g525550 MPA10 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g12933.t1,Cre12.g525550.t1.1,MPA10 - PTHR12905 KOG3947 - - - - - - Cre11.g467756 MMP5 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - Metalloproteinase of VMP family Belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoprotein g11685.t1,Cre22.g763950.t1.1,Cre22.g763950.t1.2,MMP5 PF05548 - - - - - - - - Cre11.g467759 - 0 1 1.0 nan 0 1 1.0 nan C Y - 6 - - g11689.t1,Cre22.g763750.t1.1 PF12263 - - - - - AT2G15290.1 ATTIC21,CIA5,PIC1,TIC21 translocon at inner membrane of chloroplasts 21 Cre10.g437800 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 17 - - g10785.t1 PF01547 PTHR11017 - - - GO:0005215,GO:0006810 - - - Cre01.g042150 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g945.t1 PF02517 PTHR13046 KOG4130 3.4.22.- K08658 GO:0016020 AT2G36305.1 ATFACE-2,ATFACE2,FACE2,RCE1 farnesylated protein-converting enzyme 2 Cre16.g661250 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 - - g15968.t1,Cre16.g661250.t1.1 PF01152 - - - - GO:0015671,GO:0019825 - - - Cre04.g221800 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g4841.t1 - - - - - - - - - Cre03.g173750 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g3583.t1 - - KOG3544 - - - - - - Cre14.g613700 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g14788.t1 PF01753 PTHR12298 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre13.g574050 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 8 - - g14112.t1 PF03407 - - - - - - - - Cre09.g398956 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g9906.t1,Cre02.g136000.t1.1 - - - - - - - - - Cre16.g674291 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 15 - - g16720.t1,Cre01.g065850.t1.1 PF00069 PTHR24349:SF122,PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre02.g116000 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g2401.t1 - - - - - - AT1G21370.1 - - Cre16.g686286 - 0 1 1.0 nan 0 1 1.0 nan SP n - 2 - - g16829.t1,Cre01.g070550.t1.1,Cre01.g070550.t1.2 - - - - - - - - - Cre12.g551501 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 17 - - g13514.t1,Cre12.g551451.t1.1 - - - - - - - - - Cre02.g145133 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g2566.t1,Cre02.g145133.t1.1 - - - - - - - - - Cre11.g480350 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 9 - - g11925.t1 - - - - - - - - - Cre17.g715200 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 16 - - g17314.t1 PF00560 PTHR23155,PTHR23155:SF65 KOG4579 - - GO:0005515 AT4G35470.1 PIRL4 plant intracellular ras group-related LRR 4 Cre01.g040379 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g901.t1,Cre01.g040379.t1.1 - PTHR10887 - - - - AT5G47010.1 ATUPF1,LBA1,UPF1 RNA helicase, putative Cre14.g628950 - 0 1 1.0 nan 0 1 1.0 nan O n - 3 - - g15148.t1 - - - - - - - - - Cre08.g372200 - 0 13 1.0 1.0 0 13 1.0 1.0 SP n downregulated 13 - - g8718.t1,Cre08.g372200.t1.1 - - - - - - - - - Cre17.g741100 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17925.t1,Cre17.g741100.t1.1 PF04502 PTHR12111 KOG2989 - - - AT1G17130.1 - Family of unknown function (DUF572) Cre16.g675450 SDR25 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g16609.t3,Cre16.g675450.t1.1,SDR25, g16609.t2,SDR25, g16609.t1,SDR25 PF00106 PTHR24322:SF18,PTHR24322 KOG1611 - - GO:0008152,GO:0016491 AT4G20760.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre17.g716576 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g17346.t2, g17346.t1,Cre17.g716576.t1.1 - - - - - - - - - Cre10.g434726 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g10721.t1 - - - - - - - - - Cre05.g233850 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 17 - - g5096.t1 PF05057 - - - - - AT1G10040.1 - alpha/beta-Hydrolases superfamily protein Cre16.g654450 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - - - g15821.t1,Cre16.g654450.t1.1 - - - - - - - - - Cre12.g537350 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g13213.t2, g13213.t1 - - - - - - - - - Cre10.g438600 - 0 1 1.0 nan 0 1 1.0 nan - n - 11 - - g10803.t1,Cre10.g438600.t1.1 PF09072 - - - - - - - - Cre07.g354400 CYP21,CYP743B2,CYP743B3 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 Cytochrome P450, CYP197 superfamily Cytochrome P450, CYP197 superfamily. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP743 family has best BLAST hits to CYP3 family members (animal sequences). The top g8244.t1,CYP21,CYP743B2,CYP743B3 PF00067 PTHR24301,PTHR24301:SF127 KOG0158 5.3.99.5 K01832 GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT2G26170.1 CYP711A1,MAX1 cytochrome P450, family 711, subfamily A, polypeptide 1 Cre02.g117350 TTL2,MOT11 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 Tubulin tyrosine ligase Tubulin tyrosine ligase. Identified by comparative genomics as being present only in organisms having motile (MOT) cilia. Previously annotated as MOT11 g2430.t1,TTL2 PF03133 PTHR12241,PTHR12241:SF12 KOG2157 - - GO:0004835,GO:0006464 AT1G77550.1 - tubulin-tyrosine ligases;tubulin-tyrosine ligases Cre16.g680650 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g16495.t1 - - - - - - - - - Cre02.g080750 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 17 - - g1476.t1,Cre02.g080750.t1.1 - - - - - - AT2G47070.1 SPL1 squamosa promoter binding protein-like 1 Cre03.g163150 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g3343.t1,Cre03.g163150.t1.1 PF07944 - - - K09955 - AT5G12950.1 - Putative glycosyl hydrolase of unknown function (DUF1680) Cre17.g719876 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 8 - - g17423.t1 PF12576 - - - - - AT2G46915.1 - Protein of unknown function (DUF3754) Cre01.g049350 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g1095.t1 - - - - - - AT5G05740.1 ATEGY2,EGY2 ethylene-dependent gravitropism-deficient and yellow-green-like 2 Cre13.g605350 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g14600.t1, g14600.t2 - - - - - - - - - Cre06.g285800 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g6642.t1,Cre06.g285800.t1.1 - - - - - - - - - Cre02.g100250 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g2041.t2, g2041.t1,Cre02.g100250.t1.1 - PTHR19305 KOG3065 - - - AT1G13890.1 ATSNAP30,SNAP30 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 Cre13.g583650 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g14329.t1 - - - - - - - - - Cre03.g208049 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 16 - - g4439.t1,Cre19.g755200.t1.1 PF04134,PF00571 - - - - GO:0005515 AT5G50100.1 - Putative thiol-disulphide oxidoreductase DCC Cre10.g429050 XPG2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g10600.t1,XPG2 PF00752,PF00867 PTHR11081,PTHR11081:SF1 - - K10846 GO:0004518,GO:0006281,GO:0003697,GO:0004519,GO:0005634,GO:0006289 AT3G28030.1 UVH3,UVR1 5\'-3\' exonuclease family protein Cre03.g157475 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3217.t1,Cre03.g157455.t1.2 - - - - - - - - - Cre03.g170050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g3501.t1 - - - - - - - - - Cre17.g692564 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g16886.t1 - - - - - - - - - Cre05.g246150 CYG13 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 18 Adenylate/guanylate cyclase Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g5212.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre06.g287400 STK23,STPK23 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK23 g6676.t1,STK23,STPK23 PF00069 PTHR24055:SF155,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT3G18040.1 MPK9 MAP kinase 9 Cre08.g373550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8803.t1,Cre08.g373550.t1.1 PF00293 PTHR11839 KOG3041 - - GO:0016787 - - - Cre10.g417700 RPL3 - 0 1 1.0 nan 0 1 1.0 nan C n - - Ribosomal protein L3, component of cytosolic 80S ribosome and 60S large subunit Cytosolic 80S ribosomal protein L3; Cytosolic 60S large ribosomal subunit protein L3 g10343.t1,Cre10.g417700.t1.1 PF00297 PTHR11363 KOG0746 - K02925 GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT1G43170.1 ARP1,emb2207,RP1,RPL3A ribosomal protein 1 Cre13.g563400 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g13863.t1 PF02902 - - - - GO:0006508,GO:0008234 - - - Cre06.g303483 - 0 5 1.0 1.0 0 5 1.0 1.0 M n downregulated 9 - - g7027.t1,Cre06.g303483.t1.1 - - - - - - AT5G16600.1 AtMYB43,MYB43 myb domain protein 43 Cre11.g481550 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11957.t1,Cre11.g481550.t1.1 - PTHR13097,PTHR13097:SF3 - - K03136 - AT1G03280.1 - Transcription factor TFIIE, alpha subunit Cre04.g216737 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g4507.t1 - - - - - - - - - Cre02.g105150 - 0 6 1.0 1.0 0 6 1.0 1.0 M n downregulated 14 - - g2155.t1 PF01276,PF03711 PTHR11751,PTHR11751:SF131 - - - GO:0003824 - - - Cre02.g141726 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g2728.t1,Cre15.g647150.t1.1 - - - - - - - - - Cre06.g306057 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 5 - - g7090.t1,Cre06.g306057.t1.1 - PTHR23125 - - - - - - - Cre11.g478300 SOM4 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g11875.t1,SOM4 PF04072 - - - - GO:0008168 - - - Cre12.g538550 - 0 7 1.0 1.0 0 7 1.0 1.0 M n downregulated 15 - - g13242.t1,Cre12.g538550.t1.1 PF00320 - - - - GO:0003700,GO:0006355,GO:0008270,GO:0043565 - - - Cre08.g376000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g8858.t1 PF07019 PTHR12906 KOG3415 - - - AT5G59410.1 - Rab5-interacting family protein Cre06.g298326 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 14 - - g6901.t1 - - - - - - - - - Cre16.g682650 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g16449.t1 - - - - - - - - - Cre01.g048000 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 11 - - g1066.t1 - - KOG0977 - - - AT1G03290.1 - - Cre14.g614708 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g14811.t1 - - - - - - - - - Cre14.g611552 TGL22 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 17 - - g14741.t1,Cre14.g611600.t1.2,TGL22 PF01764 PTHR21493:SF9,PTHR21493 - - - GO:0004806,GO:0006629 AT5G18640.1 - alpha/beta-Hydrolases superfamily protein Cre10.g426850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g10547.t1 PF02458 - - - - GO:0016747 AT1G65450.1 - HXXXD-type acyl-transferase family protein Cre17.g713200 OMT2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 Chloroplast oxoglutarate-malate translocator Linked to closely related OMT1; highest similarity to oxoglutarate/malate translocator (PMID: 7873543) and to di- and tri-carboxylate translocators, but also has similarity to a Na+/SO42- translocator domain; could be a dicistronic mRNA: an upstream ORF s g17269.t1,OMT2 PF00939 PTHR10283:SF13,PTHR10283 - - - GO:0005215,GO:0006814,GO:0016020,GO:0055085 AT5G12860.1 DiT1 dicarboxylate transporter 1 Cre12.g533150 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g13116.t1 PF07452 - - - - - - - - Cre16.g685929 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g16159.t1,Cre01.g064800.t1.1 - - - - - - - - - Cre12.g490350 HDS1 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase), chloroplast precursor; (ispG) (gcpE) [PMID: 15849308] g12178.t1,HDS1 PF04551 - - 1.17.7.1 K03526 GO:0016114,GO:0046429,GO:0055114 AT5G60600.1 CLB4,CSB3,GCPE,HDS,ISPG 4-hydroxy-3-methylbut-2-enyl diphosphate synthase Cre15.g635750 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 7 - - g15336.t2, g15336.t1 PF04564 PTHR22849 - - - GO:0000151,GO:0004842,GO:0016567 AT1G29340.1 ATPUB17,PUB17 plant U-box 17 Cre17.g718200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g17382.t1,Cre17.g718200.t1.1 - - - - - - - - - Cre10.g427453 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 9 - - g10559.t1 - - - - - - - - - Cre02.g085450 CPX1 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Coproporphyrinogen III oxidase Coproporphyrinogen III oxidase, chloroplast precursor; GI:837299; CPO1; HEM13; HEM6 [PMID: 15849308]; Predicted chloroplast transit peptide 1-31 g1581.t1,Cre02.g085450.t1.1,CPX1 PF01218 PTHR10755 KOG1518 1.3.3.3 K00228 GO:0004109,GO:0006779,GO:0055114 AT1G03475.1 ATCPO-I,HEMF1,LIN2 Coproporphyrinogen III oxidase Cre14.g613950 ABC2 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n upregulated 3 - - g14793.t1,ABC2, g14793.t2,Cre14.g613950.t1.1,ABC2 PF00005 PTHR19229,PTHR19229:SF72 KOG0059 - - GO:0005524,GO:0016887 AT3G47730.1 ABCA2,ATATH1,ATH1 ATP-binding cassette A2 Cre10.g418100 POA3 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 20S proteasome alpha subunit C (PSA4) 20S proteasome alpha subunit C (type 4) g10353.t1,POA3 PF00227,PF10584 PTHR11599,PTHR11599:SF13 KOG0178 3.4.25.1 K02728 GO:0004298,GO:0005839,GO:0051603,GO:0004175,GO:0006511,GO:0019773 AT3G22110.1 PAC1 20S proteasome alpha subunit C1 Cre07.g325762 DRC11 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 8 - - g7577.t1,Cre07.g325750.t1.2 PF00612,PF00004 PTHR14690 KOG0740 - - GO:0005515,GO:0005524 AT2G27600.1 ATSKD1,SKD1,VPS4 AAA-type ATPase family protein Cre07.g325760 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 2 - - g7574.t1,Cre26.g774050.t1.1 - - - - - - - - - Cre07.g325761 - 0 6 1.0 1.0 0 6 1.0 1.0 M n upregulated 2 - - g7575.t1,Cre26.g774100.t1.1,Cre26.g774100.t1.2 PF00664,PF00005 PTHR24223 - - - GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT2G34660.1 ATMRP2,EST4,MRP2 multidrug resistance-associated protein 2 Cre14.g613900 CYCT1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - T-type cyclin Homologous to cyclin T; possible role in transcription g14792.t1,Cre14.g613900.t1.1,CYCT1 PF00134 PTHR10026,PTHR10026:SF10 KOG0834 - - GO:0000079,GO:0006355,GO:0019901 AT4G19600.1 CYCT1;4 Cyclin family protein Cre01.g021200 CGL47 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - - Putative sulfur metabolite repression control protein Putative sulfur metabolite repression control protein with F-box domain g492.t1,Cre01.g021200.t1.1 - PTHR22844:SF64,PTHR22844 - - - - AT5G45360.1 - F-box family protein Cre02.g104201 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 17 - - g2132.t1,Cre02.g104200.t1.3 PF00069 PTHR23257,PTHR23257:SF99 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G50000.1 - Protein kinase superfamily protein Cre04.g212700 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - - - - g4724.t1 PF03110 - - - - GO:0003677,GO:0005634 AT2G42200.1 SPL9 squamosa promoter binding protein-like 9 Cre16.g681351 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g16476.t1,Cre16.g681351.t1.1 - - - - - - - - - Cre16.g681352 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g16477.t1 - - - - - - - - - Cre11.g476300 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g11830.t1 - - - - - - - - - Cre12.g550250 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g13543.t1,Cre12.g550250.t1.1 PF03638 PTHR12446:SF4,PTHR12446 - - - - AT4G14770.1 ATTCX2,TCX2 TESMIN/TSO1-like CXC 2 Cre14.g630550 DEG12,DEG1B,DEG13 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 12 DegP-type protease Serine protease, trypsin family, DegP type (HtrA) (protease Do) most similar to CrDEG1A and At3g27925 (DegP1); probably results from a recent duplication of DEG1 gene; contains a large N-terminal domain not found in other DegPs and at least one C-terminal g15185.t1,DEG13,DEG1B - PTHR22939:SF21,PTHR22939 KOG1320 - - - AT3G27925.1 Deg1,DEGP1 DegP protease 1 Cre07.g315750 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 10 - - g7305.t1,Cre07.g315750.t1.1 PF00106 PTHR24322 KOG0725 - - GO:0008152,GO:0016491 AT5G06060.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre07.g344050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g8004.t1 PF00400,PF08625 PTHR19854,PTHR19854:SF22 KOG0319 - K14555 GO:0006364,GO:0032040 AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre06.g251100 NMT1 - 0 1 1.0 nan 0 1 1.0 nan O n - - N-myristoyl transferase Putative N-myristoyl transferase, partial cds; involved in N-terminal myristoylation of cytosolic proteins. 5\' end of model is incomplete. g5624.t1,Cre06.g251100.t1.1,NMT1 PF02799,PF01233 PTHR11377 KOG2779 2.3.1.97 K00671 GO:0004379,GO:0006499 AT5G57020.1 ATNMT1,NMT1 myristoyl-CoA:protein N-myristoyltransferase Cre08.g369400 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g8655.t1,Cre08.g369400.t1.1 PF04969 PTHR12356 KOG2265 - - - AT5G58740.1 - HSP20-like chaperones superfamily protein Cre07.g345900 DCL3 - 0 16 1.0 1.0 0 16 1.0 1.0 O n - 8 Dicer-like protein Dicer-like protein presumably involved in posttranscriptional gene silencing/RNA interference g8048.t1,DCL3 PF00636,PF03368,PF00271,PF00270 PTHR14950,PTHR14950:SF8 - - - GO:0003723,GO:0004525,GO:0006396,GO:0016891,GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G01040.2 ASU1,ATDCL1,CAF,DCL1,EMB60,EMB76,SIN1,SUS1 dicer-like 1 Cre14.g631600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g15222.t1,Cre14.g631600.t1.1 PF03807 PTHR14239 - - - - - - - Cre02.g089900 SCAMP5,SCM1 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 8 - - g1679.t1,Cre02.g089900.t1.1,SCM1 PF04144 PTHR10687,PTHR10687:SF2 KOG3088 - - GO:0015031,GO:0016021 AT1G61250.1 SC3 secretory carrier 3 Cre15.g634800 OPR67,RAP7,CLR19 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 RAP-domain containing protein RAP-domain containing protein. The RNA-binding RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Previously annotated as CLR19 g15306.t1,CLR19,RAP7 - - - - - - - - - Cre17.g726526 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g17567.t1 - - - - - - - - - Cre04.g231516 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g5052.t2,Cre32.g781550.t1.1,Cre32.g781550.t1.2, g5052.t1,Cre32.g781550.t2.1 PF00514,PF00651 PTHR23315 KOG0166 - - GO:0005515 AT5G19330.1 ARIA ARM repeat protein interacting with ABF2 Cre02.g093900 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g1774.t1,Cre02.g093900.t1.1 - - - - - - - - - Cre09.g401997 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 - - g10006.t1 PF03446 PTHR22981 KOG0409 - - GO:0016491,GO:0004616,GO:0006098,GO:0055114 AT1G17650.1 GLYR2,GR2 glyoxylate reductase 2 Cre05.g232950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g5115.t1,Cre05.g232950.t1.1 PF06991 PTHR15327 KOG1425 - K13110 GO:0005576 AT5G17900.1 - microfibrillar-associated protein-related Cre02.g097213 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g1976.t1,Cre02.g097213.t1.1 PF00530 PTHR19331,PTHR19331:SF369 - - - GO:0005044,GO:0016020 - - - Cre17.g703600 OFD1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Basal body protein Homolog of Oral-facial-digital syndrome protein 1; found in basal body proteome as BUG11 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400]. Mammalian homolog is required for ciliogenesis and structure of distal fibers g17058.t2,Cre17.g703600.t1.1,OFD1, g17058.t1,OFD1 - - - - - - - - - Cre07.g318209 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 10 - - g7355.t1,Cre07.g318209.t1.1 PF00856 PTHR12197,PTHR12197:SF84 - - - GO:0005515 AT1G26760.1 ATXR1,SDG35 SET domain protein 35 Cre08.g361150 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - - - g8457.t1,Cre08.g361150.t1.1 PF05686 PTHR12203 - - - - - - - Cre12.g502900 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12512.t1,Cre12.g502900.t1.1 - - - - - - - - - Cre02.g095500 - 0 4 1.0 1.0 0 4 1.0 1.0 C n downregulated 9 - - g1939.t1 - - - - - - - - - Cre07.g314550 TMG9,TRM8 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 tRNA (guanine-N7)-methyltransferase Methyltransferase, catalyzes the transfer of a methyl group from S-adenosylmethionine to the N7 of guanines at position 46 of tRNAs; homologue of S. cerevisiae TRM8. Previously annotated as TRM8 g7277.t1,Cre07.g314550.t1.1,TMG9,TRM8 PF02390 PTHR23417:SF1,PTHR23417 KOG3115 2.1.1.33 K03439 GO:0006400,GO:0008176 AT5G24840.1 - tRNA (guanine-N-7) methyltransferase Cre09.g399141 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g9911.t1,Cre02.g136250.t1.1,Cre02.g136250.t1.2 PF07690 PTHR11662:SF23,PTHR11662 KOG2532 - - GO:0016021,GO:0055085 AT5G44370.1 PHT4;6 phosphate transporter 4;6 Cre12.g513100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g12669.t1,Cre12.g513100.t1.1 - - - - - - - - - Cre03.g205000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g4213.t1 - - - - - - - - - Cre12.g547150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 13 - - g13610.t1,Cre12.g547150.t1.1 PF02274 PTHR12737,PTHR12737:SF5 - 3.5.3.18 K01482 GO:0005737,GO:0016813 - - - Cre02.g144450 FAP1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g2584.t1,Cre02.g144450.t1.1 - - - - - - - - - Cre16.g693601 ISG2,ISG-C2 - 0 13 1.0 1.0 0 13 1.0 1.0 SP n - 12 - - g15607.t1,ISG-C2,ISG2 - - - - - - - - - Cre02.g079200 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g1446.t1,Cre02.g079200.t1.1 PF00808 PTHR11064,PTHR11064:SF9 KOG0871 - - GO:0005622,GO:0043565,GO:0003677 AT4G14540.1 NF-YB3 nuclear factor Y, subunit B3 Cre07.g322800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g7457.t1,Cre07.g322800.t1.1 - - - - - - - - - Cre04.g213150 MAE13 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n upregulated 17 - - g4714.t1,Cre04.g213150.t1.1,MAE13 PF01554 PTHR11206:SF3,PTHR11206 - - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT3G08040.1 ATFRD3,FRD3,MAN1 MATE efflux family protein Cre04.g213152 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g4715.t1 - - - - - - - - - Cre03.g159400 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 14 - - g3264.t1, g3264.t2,Cre03.g159400.t1.1 PF00899 PTHR10953:SF8,PTHR10953 KOG2018 - - GO:0003824 AT5G37530.2 - NAD(P)-binding Rossmann-fold superfamily protein Cre17.g745297 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g18022.t1,Cre20.g759621.t1.1,Cre20.g759621.t1.2 - - - - - - - - - Cre01.g017550 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n upregulated 1 - - g415.t1 PF00560 PTHR23155,PTHR23155:SF80 KOG4237 - - GO:0005515 AT4G36180.1 - Leucine-rich receptor-like protein kinase family protein Cre12.g529050 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 - - g13027.t1,Cre12.g529050.t1.1 PF07887 - - - - - - - - Cre07.g328350 FAP207 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g7638.t1,Cre07.g328350.t1.1 PF02493 PTHR23084:SF28,PTHR23084 - - - - AT3G09920.1 PIP5K9 phosphatidyl inositol monophosphate 5 kinase Cre12.g542650 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 14 - - g13716.t2, g13716.t1 PF01436,PF00651 PTHR24413 - - - GO:0005515 AT1G23890.2 - NHL domain-containing protein Cre06.g303251 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 3 - - g7022.t1 - - - - - - - - - Cre17.g706650 VPS22 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 Subunit of ESCRT-II complex Expressed Protein. Similar to VPS22/SNF8, a VPS36-domain protein, component of the ESCRT-II complex involved in protein sorting in endosomes. g17124.t1,Cre17.g706650.t1.1,VPS22 PF04157 PTHR12806 KOG3341 - K12188 - AT4G27040.1 VPS22 EAP30/Vps36 family protein Cre12.g516050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g12730.t1,Cre12.g516050.t1.1 PF00498,PF00097 - KOG2930 - - GO:0005515 AT3G16090.1 - RING/U-box superfamily protein Cre12.g545700 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13642.t1 - - - - - - - - - Cre09.g404000 CPLD59 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 7 - - g9179.t1 PF00805 - - - - - AT5G53490.3 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre01.g039650 PDF1C - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g886.t1,Cre01.g039650.t1.1 PF01327 PTHR10458 - - - GO:0005506,GO:0006412,GO:0042586 AT5G14660.1 ATDEF2,DEF2,PDF1B peptide deformylase 1B Cre10.g451100 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 16 - - g11086.t1 PF00561 PTHR10992 KOG2624 - - - AT1G15060.1 - Uncharacterised conserved protein UCP031088, alpha/beta hydrolase Cre02.g073950 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g1311.t1,Cre02.g073950.t1.1 PF03055 PTHR10543,PTHR10543:SF6 KOG1285 - - - AT4G32810.1 ATCCD8,CCD8,MAX4 carotenoid cleavage dioxygenase 8 Cre03.g166300 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3413.t1,Cre03.g166300.t1.1 - - - - - - - - - Cre02.g080500 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 13 - - g1471.t1,Cre02.g080500.t1.1 PF00201 PTHR11926,PTHR11926:SF16 KOG1192 - - GO:0008152,GO:0016758 - - - Cre12.g500500 STM1,SMT1,SMT2 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 7 Sterol-C24-methyltransferase Similar to sterol-C24-Methyltransferase from Arabidopsis. Previously annotated as SMT1 but this conflicts with a series of smt mutants identified by Fang and Umen as suppressors of MAT3 size control g12566.t2,SMT1,STM1, g12566.t1,SMT1,STM1 PF08241,PF08498 PTHR10108,PTHR10108:SF21 KOG1269 2.1.1.143 K08242 GO:0008152,GO:0008168,GO:0006694 AT1G76090.1, AT1G20330.1 CVP1,FRL1,SMT2, SMT3 sterol methyltransferase 2, sterol methyltransferase 3 Cre06.g310000 AP4E1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Epsilon4-Adaptin Expressed protein. Epsilon4-Adaptin, clathrin adaptor complex subunit, putative member of AP-4 complex g7173.t1,Cre06.g310000.t1.1,AP4E1 PF01602 PTHR22780,PTHR22780:SF12 KOG1062 - K12400 GO:0006886,GO:0016192,GO:0030117 AT1G31730.1 - Adaptin family protein Cre05.g237200 DRP4C - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - Dynamin-related GTPase Hypothetical Conserved Protein. Similar to DRP4 (MX-like) class of Dynamin-like GTPases. Previously annotated as DRP4C g5457.t2, g5457.t1 PF01031,PF00350 PTHR11566:SF21,PTHR11566 KOG0446 - - GO:0005525,GO:0003924 AT1G60500.1 DRP4C Dynamin related protein 4C Cre02.g078150 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 9 - - g1413.t1 PF00400,PF00439 PTHR16266,PTHR16266:SF17 KOG0644 - - GO:0005515 AT5G49430.1 - WD40/YVTN repeat-like-containing domain;Bromodomain Cre13.g575550 - 0 1 1.0 nan 0 1 1.0 nan SP n - 5 - - g14146.t1,Cre13.g575550.t1.1 - - - - - - - - - Cre03.g201200 FAP283 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 14 Flagellar Associated Protein Hypothetical Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g4301.t1 - - - - - - - - - Cre07.g324400 VPS24 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Subunit of the ESCRT-III complex Hypothetical Conserved Protein. Similar to VPS24, SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes) g7494.t1,Cre07.g324400.t1.1,VPS24 PF03357 PTHR10476,PTHR10476:SF1 KOG3229 - K12193 GO:0015031 AT5G22950.1 VPS24.1 SNF7 family protein Cre12.g517900 SECA1,SCA1 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Chloroplast-associated SecA protein SecA protein associated with import of proteins into chloroplast. Strong homology to SecA. Previously annotated as SECA1 g12770.t1,SCA1 PF07517,PF01043,PF07516 - - - K03070 GO:0005524,GO:0016020,GO:0017038 AT4G01800.1 AGY1,AtcpSecA Albino or Glassy Yellow 1 Cre16.g658250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g15904.t1, g15904.t2 - - - - - - - - - Cre04.g215702 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g4658.t1 - - - - - - - - - Cre07.g321650 CYCL1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 L-type cyclin Homologous to cyclin L; possible role in transcription g7434.t1,Cre07.g321650.t1.1 PF00134 PTHR10026,PTHR10026:SF13 KOG0835 - - GO:0000079,GO:0006355,GO:0019901 AT2G26430.1 ATRCY1,RCY1 arginine-rich cyclin 1 Cre06.g283950 LHCBM4 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 Chlorophyll a/b binding protein of LHCII PSII-associated chlorophyll a/b-binding protein. Identified in the eyespot phosphoproteome by Wagner et al. 2008 [PMID: 18065559] g6602.t1,Cre06.g283950.t1.1 PF00504 PTHR21649 - - K08913 GO:0009765,GO:0016020 AT2G05100.1 LHCB2,LHCB2.1 photosystem II light harvesting complex gene 2.1 Cre06.g296450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g6856.t2, g6856.t3, g6856.t1 - - - - - - - - - Cre07.g329400 SMM26 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g7662.t1,SMM26 - - - - - - - - - Cre03.g199800 HYDA1 - 0 6 1.0 1.0 0 6 1.0 1.0 C n downregulated 13 Iron hydrogenase Chloroplast Fe-hydrogenase (= HYDA1); corresponds to GI:18026272 g4331.t1 PF02256,PF02906 PTHR11615:SF6,PTHR11615 KOG2439 - - - AT4G16440.1 - ferredoxin hydrogenases Cre08.g381900 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n - 16 - - g8986.t1,Cre08.g381900.t1.1 PF00097 PTHR22937,PTHR22937:SF25 KOG2930 - - - AT2G20650.1 - RING/U-box superfamily protein Cre17.g724100 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g17512.t1, g17512.t2, g17512.t3 - - - - - - - - - Cre08.g376250 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 - - g8863.t1 - PTHR12979,PTHR12979:SF4 - - - - - - - Cre03.g158464 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g3244.t1 - - - - - - - - - Cre16.g682000 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g16464.t1 - - - - - - - - - Cre07.g329800 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g7674.t1,Cre07.g329800.t1.1 PF06825 PTHR19424 KOG4117 - - - AT4G15802.1 AtHSBP,HSBP heat shock factor binding protein Cre12.g550000 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g13548.t1 - - - - - - - - - Cre10.g452750 TPT16 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g11119.t1,Cre10.g452750.t1.1,TPT16 PF03151 PTHR11132 KOG1441 - - - AT3G17430.1 - Nucleotide-sugar transporter family protein Cre09.g412787 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g10219.t1 PF01753 - - - - GO:0008270 - - - Cre14.g621800 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 7 - - g14984.t1 PF05686 PTHR12203,PTHR12203:SF14 - - - - AT1G63420.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre06.g296983 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g6871.t1 PF00899,PF10585,PF02134 PTHR10953:SF5,PTHR10953 KOG2013 6.3.2.19 K10685 GO:0003824,GO:0005524,GO:0006464,GO:0008641 AT2G21470.1 ATSAE2,EMB2764,SAE2 SUMO-activating enzyme 2 Cre16.g689871 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g16861.t1 PF00133,PF08264,PF06827 PTHR11946:SF9,PTHR11946 KOG0433 6.1.1.5 K01870 GO:0004822,GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418,GO:0003824 AT5G49030.3 OVA2 tRNA synthetase class I (I, L, M and V) family protein Cre06.g271200 PNO1 - 0 15 1.0 1.0 0 15 1.0 1.0 C n - 16 - - g6085.t1,Cre06.g271200.t1.1,PNO1 PF07992,PF02852,PF00070,PF00581 PTHR22912,PTHR22912:SF2 KOG0405 - - GO:0005737,GO:0016491,GO:0045454,GO:0050660,GO:0055114 AT3G27820.1 ATMDAR4,MDAR4 monodehydroascorbate reductase 4 Cre01.g004400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g108.t1,Cre01.g004400.t1.1 - - - - - - - - - Cre02.g119650 GNT3 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g2484.t1,GNT3 - - - - - - - - - Cre02.g119651 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g2485.t1,Cre02.g119651.t1.1 PF11397 PTHR12907,PTHR12907:SF3 KOG3710 - - - - - - Cre10.g460300 GPM2,PGM2 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 11 Phosphoglycerate mutase - g11285.t1,Cre10.g460300.t1.1,PGM2 PF00300 PTHR23029 KOG0235 5.4.2.1 K01834 - AT5G04120.1 - Phosphoglycerate mutase family protein Cre02.g115100 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g2378.t1 - - - - - - - - - Cre02.g089150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1662.t1 PF00569,PF04433,PF00249 PTHR12374,PTHR12374:SF1 KOG0457 - K11314 GO:0008270,GO:0005515 AT3G07740.1 ADA2A,ATADA2A,HAC10,HXA02,HXA2 homolog of yeast ADA2 2A Cre03.g174500 HDZ1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g3601.t1,HDZ1 PF02791,PF00046 - KOG0490 - - GO:0003700,GO:0006355,GO:0043565 AT5G44180.1 - Homeodomain-like transcriptional regulator Cre03.g206850 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g4174.t1 PF03227 PTHR13234,PTHR13234:SF8 - - - - - - - Cre01.g011400 HGC - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g285.t2,HGC, g285.t1,HGC - - - - - - - - - Cre03.g177850 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g3679.t1,Cre03.g177850.t1.1 - - KOG4744 - - - - - - Cre09.g393765 LMR1 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 Chitinase-related protein Partial sequence similar to Volvox carteri clone A chitinase [PMID: 9596636, Genbank entry AF058716]; contains two LysM-domains which are found in a variety of enzymes involved in bacterial cell wall degradation; the domain may have a general peptidoglyca g9763.t1,Cre02.g129800.t1.1,Cre02.g129800.t1.2,LMR1 PF01476 PTHR21666:SF8,PTHR21666 - - - GO:0016998 - - - Cre13.g586700 - 0 11 1.0 1.0 0 11 1.0 1.0 O n downregulated 17 - - g14395.t1, g14395.t2 PF00989 PTHR10919:SF179,PTHR10919 - - - GO:0006355 - - - Cre13.g577950 VPS60 - 0 12 1.0 1.0 0 12 1.0 1.0 O n upregulated 9 Subunit of the ESCRT-III complex Expressed Protein. Similar to VPS60, a SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes) g14200.t1,Cre13.g577950.t1.1,VPS60 PF03357 PTHR14048:SF4,PTHR14048 KOG1655 - K12198 GO:0015031 AT3G10640.1 VPS60.1 SNF7 family protein Cre06.g284200 LHCBM9 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 Chlorophyll a/b binding protein of LHCII Chlorophyll a-b binding protein of LHCII g6608.t1,Cre06.g284200.t1.1 PF00504 PTHR21649 - - - GO:0009765,GO:0016020 AT2G05070.1 LHCB2,LHCB2.2 photosystem II light harvesting complex gene 2.2 Cre12.g540650 - 0 11 1.0 1.0 0 11 1.0 1.0 C n upregulated 17 - - g13763.t1,Cre12.g540650.t1.1 PF01061,PF08370,PF00005 PTHR19241,PTHR19241:SF10 KOG0065 - - GO:0016020,GO:0005524,GO:0016887 AT2G29940.1 ATPDR3,PDR3 pleiotropic drug resistance 3 Cre01.g034600 - 0 5 1.0 1.0 0 5 1.0 1.0 C n upregulated 11 - - g781.t1,Cre01.g034600.t1.1 PF00400 PTHR22847,PTHR22847:SF10 KOG1036 - - - AT3G09080.1 - Transducin/WD40 repeat-like superfamily protein Cre08.g358522 CEP5 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 9 Cysteine endopeptidase Cysteine endopeptidases (EC 3.4.22), C1A family (papain-type); most similar to insect proteinases possibly involved in defense mechanisms (PMID: 10050046); contains N-terminal cathepsin propeptide inhibitor domain (I29) domain; targeted to secretory pathw g8339.t1,Cre41.g786400.t1.1,Cre41.g786400.t1.2,CEP5 PF00112 PTHR12411:SF149,PTHR12411 KOG1543 - - GO:0006508,GO:0008234 AT4G35350.1 XCP1 xylem cysteine peptidase 1 Cre08.g358521 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8338.t1 - - - - - - - - - Cre08.g358527 - 0 1 1.0 nan 0 1 1.0 nan - n - 2 - - g8344.t1 - - - - - - - - - Cre08.g358526 AAA1 - 0 1 1.0 nan 0 1 1.0 nan C n - 5 Plastidic ADP/ATP translocase ADP,ATP carrier protein; belongs to a plant-specific transporter family; most abundantly expressed isoform in a three-member family g8343.t1,Cre41.g786600.t1.1,AAA1 PF03219 - - - K03301 - AT1G80300.1 ATNTT1,NTT1 nucleotide transporter 1 Cre08.g358525 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g8342.t1 PF00255 PTHR11592 KOG1651 - - GO:0004602,GO:0006979,GO:0055114 AT2G25080.1 ATGPX1,GPX1 glutathione peroxidase 1 Cre08.g358524 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g8341.t1,Cre41.g786450.t1.1,Cre41.g786450.t1.2 - - - - - - - - - Cre08.g358529 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Similar to Flagellar Associated Protein FAP157 Similar to Flagellar Associated Protein FAP157 that is found in the flagellar proteome [PMID: 15998802]. This may be a duplication of FAP157; overlaps gene model of FAP157 from v3 g8346.t1,Cre41.g786700.t1.1 - - - - - - - - - Cre08.g358528 FAP157 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g8345.t1,Cre41.g786650.t1.1,Cre41.g786650.t1.2 - - - - - - - - - Cre17.g727450 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g17587.t1,Cre17.g727450.t1.1 PF00566 PTHR22957:SF132,PTHR22957 - - - GO:0005097,GO:0005622,GO:0032313 AT3G02460.1 - Ypt/Rab-GAP domain of gyp1p superfamily protein Cre12.g485050 CAH6 - 0 5 1.0 1.0 0 5 1.0 1.0 C n downregulated 14 Carbonic anhydrase 6 Chloroplast stroma carbonic anhydrase. The inorganic carbon-concentrating mechanism has been reviewed by Spalding 2008 [PMID: 17597098]. g12037.t1,Cre12.g485050.t1.1,CAH6 PF00484 PTHR11002,PTHR11002:SF1 KOG1578 - - GO:0004089,GO:0008270,GO:0015976 AT3G01500.2 ATBCA1,ATSABP3,CA1,SABP3 carbonic anhydrase 1 Cre11.g476150 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g11827.t1,Cre11.g476150.t1.1 PF05096 - - - - - AT4G25720.1 ATQC,QC,QCT glutaminyl cyclase Cre17.g731100 CPL14 - 0 1 1.0 nan 0 1 1.0 nan C Y - - - - g17667.t1,Cre17.g731100.t1.1 PF10184 - KOG4457 - - - AT1G16320.1 - Uncharacterized conserved protein (DUF2358) Cre12.g484900 FAP83 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 15 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g12034.t1,Cre12.g484900.t1.1 - - - - - - - - - Cre13.g569300 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 9 - - g14008.t1 - - - - - - - - - Cre02.g111900 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g2303.t1, g2303.t2 - - - - - - - - - Cre17.g734628 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g17769.t1,Cre15.g645050.t1.1,Cre15.g645050.t1.2 PF12171 PTHR20863,PTHR20863:SF2 KOG3408 - - - AT2G36930.1 - zinc finger (C2H2 type) family protein Cre03.g145907 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 Putative ribosomal RNA methyltransferase Putative ribosomal RNA methyltransferase in the RrmJ/FtsJ family; previously annotated as TRM7 g2960.t1,Cre01.g060300.t1.1,Cre01.g060300.t1.2 PF01728 PTHR10920 KOG1099 2.1.1.- K02427 GO:0003676,GO:0008168,GO:0032259,GO:0001510 AT5G01230.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre10.g433050 DRP8,DRP5B,ARCS - 0 10 1.0 1.0 0 10 1.0 1.0 M Y downregulated 11 Dynamin-related GTPase Expressed Protein. Similar to Arabidopsis DRP5B (formerly ARC5), a dynamin GTP-ase involved in plastid division. Previously annotated as DRP5B g10684.t1,ARCS,DRP5B PF00350 PTHR11566:SF63,PTHR11566 KOG0446 - - GO:0003924,GO:0005525 AT3G19720.1 ARC5,DRP5B P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre01.g026400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g606.t1 PF03124 PTHR10783,PTHR10783:SF9 - - - GO:0016021 AT5G35730.1 - EXS (ERD1/XPR1/SYG1) family protein Cre04.g224300 CGL84 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 7 Conserved protein of unknown function Conserved in green algae and plants g4893.t1,CGL84 PF03407 - - - - - AT2G35610.1 XEG113 xyloglucanase 113 Cre10.g455900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g11187.t1,Cre10.g455900.t1.1 - - - - - - - - - Cre01.g043550 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 17 - - g974.t1 PF03110 - - - - GO:0003677,GO:0005634 AT1G27370.1 SPL10 squamosa promoter binding protein-like 10 Cre09.g412250 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 14 - - g10207.t1 - - - - - - - - - Cre06.g290800 RMG1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g6741.t1,RMG1 PF09445 PTHR14741:SF12,PTHR14741 KOG2730 2.1.1.- K14292 GO:0001510,GO:0008168,GO:0009452 AT1G45231.2 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre09.g413123 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g10230.t1 - - - - - - - - - Cre14.g625000 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g15056.t1 - - - - - - - - - Cre08.g373374 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8787.t2, g8787.t1 - - - - - - - - - Cre07.g356850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g8295.t1 PF00582 - - - - GO:0006950 AT3G11930.4 - Adenine nucleotide alpha hydrolases-like superfamily protein Cre10.g441500 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 8 - - g10864.t1,Cre10.g441500.t1.1 PF10275 PTHR12931,PTHR12931:SF10 KOG3991 3.4.-.- K09602 - AT1G28120.1 - - Cre01.g014150 MFT5,MAE5 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 MATE efflux family protein Putative MATE efflux family protein. Previously annotated as MFT5 g345.t1,Cre01.g014150.t1.1,MAE5,MFT5 PF01554 PTHR11206:SF38,PTHR11206 KOG1347 - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT5G52450.1 - MATE efflux family protein Cre01.g035550 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 11 - - g801.t1 - - - - - - - - - Cre12.g509900 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g12353.t1 - - - - - - - - - Cre01.g008402 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g213.t1 PF00069 PTHR23257,PTHR23257:SF99 - - - GO:0004672,GO:0005524,GO:0006468 AT2G40860.1 - protein kinase family protein / protein phosphatase 2C ( PP2C) family protein Cre13.g574700 PEX13 - 0 1 1.0 nan 0 1 1.0 nan O Y - 15 - - g14126.t1,Cre13.g574700.t1.1 - - - - - - AT3G07560.1 APM2,PEX13 peroxin 13 Cre03.g168400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g3465.t1 - - - - - - - - - Cre09.g409600 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g10149.t1 - - - - - - - - - Cre05.g230800 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 15 - - g5151.t1 PF07496 - - - - GO:0008270 AT3G54460.1 - SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein Cre01.g015400 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g371.t1,Cre01.g015400.t1.1 - - - - - - AT1G63610.2 - - Cre02.g078939 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 4 - - g1436.t1,Cre64.g793000.t1.1,Cre64.g793000.t1.2 PF03441,PF00875 PTHR11455 KOG0133 4.1.99.3 K01669 GO:0003913,GO:0006281 AT5G24850.1 CRY3 cryptochrome 3 Cre09.g400960 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g9978.t1,Cre02.g138500.t1.1,Cre02.g138500.t1.2 - - - - - - - - - Cre13.g587150 HAT5 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g14405.t1,HAT5 PF01853,PF11717 PTHR10615 KOG2747 - - GO:0005634,GO:0006355,GO:0016747 AT5G09740.1 HAM2 histone acetyltransferase of the MYST family 2 Cre03.g153900 FMO11 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g3135.t1,Cre03.g153900.t1.1,FMO11 PF01494,PF01266 PTHR13789,PTHR13789:SF100 KOG2614 - - GO:0004497,GO:0055114,GO:0016491 AT2G29720.1 CTF2B FAD/NAD(P)-binding oxidoreductase family protein Cre02.g113500 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - - - - g2338.t1,Cre02.g113500.t1.1 PF08757 - - - - - - - - Cre03.g197513 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 12 - - g4091.t1,Cre03.g197513.t1.1 PF01679 PTHR21659 KOG1773 - - GO:0016021 AT2G38905.1 - Low temperature and salt responsive protein family Cre03.g149450 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 7 - - g3039.t1 - - - - - - AT5G49960.1 - - Cre02.g143327 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 18 - - g2826.t1,Cre38.g785100.t1.1,Cre38.g785100.t1.2 - - - - - - - - - Cre14.g632400 SSA19 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 14 Predicted protein Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA) g15238.t1,SSA19 PF07648,PF00050 PTHR21131 - - - GO:0005515 - - - Cre06.g272150 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g6106.t1,Cre06.g272150.t1.1 - PTHR15337:SF6,PTHR15337 - - - - - - - Cre17.g745847 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g18033.t1 - - - - - - - - - Cre05.g245950 DRP1 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 7 Dynamin-related GTPase Expressed Protein. Similar to Arabidopsis DRP1 group, a Dynamin-type GTPase. g5216.t1 PF01031,PF00350,PF02212 PTHR11566:SF12,PTHR11566 KOG0446 - - GO:0005525,GO:0003924 AT1G14830.1 ADL1C,ADL5,DL1C,DRP1C DYNAMIN-like 1C Cre17.g726550 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17568.t1 - - - - - - - - - Cre01.g041150 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 15 - - g921.t1 - - - - - - - - - Cre03.g201050 ZNJ2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 4 DnaJ-like Zinc-finger protein Contains a Zn-finger domain with CXXCXGXG motif, also found in DnaJ co-chaperones; possibly directed to thylakoid lumen; orthologous to thylakoid lumenal P17.1 (At3g44020) g4304.t1,Cre03.g201050.t1.1,ZNJ2 - - - - - - AT3G44020.1 - thylakoid lumenal P17.1 protein Cre09.g390300 - 0 7 1.0 1.0 0 7 1.0 1.0 O n downregulated 11 - - g9489.t1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre03.g192350 - 0 1 1.0 nan 0 1 1.0 nan SP n - 2 - - g3981.t1 PF01344 PTHR24412 - - K10447 GO:0005515 AT5G01660.1 - - Cre01.g050650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g1122.t1,Cre01.g050650.t1.1 - - - - - - - - - Cre12.g510900 HSLU1,HUV1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - ATP-dependent subunit of the HslUV protease Similar to eubacterial ClpY (HslU), ATP-dependent subunit of the HslUV protease; probably directed to the mitochondrion, based on N-terminal sequence (TargetP: 0.726 ; Predotar: 0.67) g12330.t1,Cre12.g510900.t1.1,HUV1 PF00004,PF07724,PF10431 PTHR11262:SF3,PTHR11262 KOG0745 - - GO:0005524,GO:0005737,GO:0009376,GO:0016887,GO:0070011 AT5G49840.1 - ATP-dependent Clp protease Cre05.g236750 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 15 - - g5446.t1 - - - - - - - - - Cre14.g629550 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g15162.t1,Cre14.g629550.t1.1 - PTHR13452:SF3,PTHR13452 KOG3943 - K06963 - AT5G12410.1 - THUMP domain-containing protein Cre08.g377500 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g8889.t1,Cre08.g377500.t1.1 - - - - - - - - - Cre14.g628200 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 4 - - g15133.t1 PF00069 PTHR23257:SF341,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G03730.1 AtCTR1,CTR1,SIS1 Protein kinase superfamily protein Cre03.g156850 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 18 - - g3202.t1 - - - - - - - - - Cre02.g090100 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g1683.t1,Cre02.g090100.t1.1 PF01529 PTHR22883 - - - GO:0008270 AT3G04970.1 - DHHC-type zinc finger family protein Cre09.g408550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g10125.t1,Cre09.g408550.t1.1 PF00899 PTHR10953 KOG2014 6.3.2.19 K10684 GO:0003824 AT5G50680.2 ATSAE1B,SAE1B SUMO activating enzyme 1B Cre16.g686734 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g16833.t1,Cre01.g070750.t1.1 PF00069 PTHR24349:SF109,PTHR24349 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre10.g442850 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g10893.t1 PF00505,PF01751,PF01131,PF01396 PTHR11390 KOG1956 - - GO:0003677,GO:0003916,GO:0005694,GO:0006265,GO:0003917 AT4G31210.1 - DNA topoisomerase, type IA, core Cre13.g563050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g13855.t1 - - - - - - - - - Cre12.g530850 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 17 - - g13065.t1, g13065.t3, g13065.t2 - - - - - - - - - Cre02.g110350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g2265.t1,Cre02.g110350.t1.1 PF00168 PTHR10774 - - - GO:0005515 AT4G34150.1 - Calcium-dependent lipid-binding (CaLB domain) family protein Cre13.g581700 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 7 - - g14285.t1 - - - - - - - - - Cre17.g719500 AOF9 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 6 - - g17410.t1,AOF9 PF01593 PTHR10742,PTHR10742:SF3 KOG0029 - - - AT4G14210.1 PDE226,PDS,PDS3 phytoene desaturase 3 Cre01.g044250 CAM4 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 4 - - g989.t1,CAM4 - PTHR23050:SF89,PTHR23050 - - - - AT4G37010.2 CEN2 centrin 2 Cre04.g223200 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 9 - - g4869.t1 PF00069 PTHR24055:SF158,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT3G18040.1 MPK9 MAP kinase 9 Cre16.g665850 FAP248 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 - - g16070.t1 - - - - - - - - - Cre14.g610150 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g14707.t1,Cre14.g610150.t1.1 - - - - - - - - - Cre02.g099700 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g2029.t1,Cre02.g099700.t1.1 - - - - - - - - - Cre07.g338950 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g7884.t1,Cre07.g338950.t1.1 - - - - - - - - - Cre01.g051300 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - - - - g1136.t1 PF05572 - - - - - - - - Cre01.g054150 NTR4,NTRC1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 4 NADPH-dependent thioredoxin reductase NADPH-dependent thioredoxin reductase C type (NTR/thioredoxin fusion); NTRC is a two domain protein containing an NADPH dependent thioredoxin reductase (N-terminal part) and a thioredoxin (C-terminal part). The protein was shown to be localized in chlorop g1196.t1,Cre01.g054150.t1.1,NTR4 PF07992,PF00070,PF00085 PTHR22912,PTHR22912:SF51 KOG0404 1.8.1.9 K00384 GO:0016491,GO:0050660,GO:0055114,GO:0045454 AT2G41680.1 NTRC NADPH-dependent thioredoxin reductase C Cre02.g102850 CPZ - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g2101.t1,CPZ PF00246 PTHR12756 - - - GO:0004181,GO:0006508,GO:0008270 - - - Cre01.g052650 APT2 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 13 - - g1166.t1,APT2 PF00328 PTHR12750,PTHR12750:SF9 - - - GO:0003993 AT3G01310.2 - Phosphoglycerate mutase-like family protein Cre12.g496950 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 17 - - g12646.t1 PF00400,PF01546,PF07687 PTHR11014:SF15,PTHR11014 KOG2276 3.4.-.- K14262 GO:0008152,GO:0016787 AT5G52820.1 - WD-40 repeat family protein / notchless protein, putative Cre08.g375900 EIF2A-1,EIF2Aa,EIF2X - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 4 Eukaryotic translation initiation factor 2 subunit 1, eIF2-alpha subunit Eukaryotic translation initiation factor 2 subunit 1, eIF2-alpha subunit. Previously annotated as EIF2Aa. Most similar to G. gallus (chicken) EIF2A in SwissProt g8856.t1,EIF2A-1,EIF2Aa,EIF2X PF08662 PTHR13227 KOG2315 - - - AT1G73180.1 - Eukaryotic translation initiation factor eIF2A family protein Cre18.g749497 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g18106.t1,Cre31.g780250.t1.1,Cre31.g780250.t1.2 PF02844,PF01071,PF02843 PTHR10520 - 6.3.4.13 K01945 GO:0004637,GO:0009113 AT1G09830.1 - Glycinamide ribonucleotide (GAR) synthetase Cre11.g481200 PHX17 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g11948.t1,Cre11.g481200.t1.1,PHX17 PF03171 PTHR10869 - - - GO:0016491 AT3G06300.1 AT-P4H-2 P4H isoform 2 Cre04.g228950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g5011.t1,Cre04.g228950.t1.1 - - - - - - - - - Cre12.g555200 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 - - g13428.t1 PF09786 PTHR21780 - - - - AT1G07970.1 - - Cre15.g638000 CLR9,RAP8,OPR69 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - RAP-domain containing protein RAP-domain containing protein. The RNA-binding RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Previously annotated as CLR9 g15452.t1,CLR9,RAP8 PF08373 - - - - - - - - Cre01.g067647 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g1279.t1 - - - - - - - - - Cre18.g749147 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g18099.t1,Cre31.g779900.t1.1 - - - - - - - - - Cre16.g676700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g16581.t1,Cre16.g676700.t1.1 PF00620 - - - - GO:0005622,GO:0007165 AT5G61530.1 - small G protein family protein / RhoGAP family protein Cre13.g592300 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 1 - - g14520.t1,Cre13.g592300.t1.1 PF01207 PTHR11082,PTHR11082:SF4 - 1.-.-.- K05543 GO:0008033,GO:0017150,GO:0050660,GO:0055114 AT3G49640.1 - Aldolase-type TIM barrel family protein Cre03.g160150 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g3279.t1,Cre03.g160150.t1.1 - - - - - - - - - Cre01.g000950 MFT13 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g22.t1,MFT13 PF07690 PTHR24003:SF275,PTHR24003 - - - GO:0016021,GO:0055085 AT5G64500.1 - Major facilitator superfamily protein Cre17.g729250 UPF2 - 0 16 1.0 1.0 0 16 1.0 1.0 O n - - UPF2 regulator of nonsense transcripts, NMD protein Putative UPF2 regulator of nonsense transcripts. Part of a post-splicing multiprotein complex involved in both mRNA nuclear export and mRNA surveillance located in the perinuclear area interacts with translation release factors and the proteins that are f g17625.t1,UPF2 PF04050,PF02854 PTHR12839 KOG2051 - K14327 GO:0005515,GO:0016070 AT2G39260.1 - binding;RNA binding Cre10.g447735 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g11011.t1,Cre10.g447735.t1.1 - - - - - - - - - Cre09.g396300 PPX1 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Protoporphyrinogen oxidase Protoporphyrinogen oxidase, chloroplast precursor (PPO I) [GI:3928794; PMID: 9862501; PMID: 16306143]; Protoporphyrinogen IX oxidase isozyme I (PPX I); similar to Bacillus subtilis HEMY type protoporphyrinogen oxidase; [PMID: 1459957, PMID: 7928957]. Pre g9363.t1,Cre09.g396300.t1.1 PF01593 PTHR10742:SF48,PTHR10742 KOG1276 1.3.3.4 K00231 - AT4G01690.1 HEMG1,PPO1,PPOX Flavin containing amine oxidoreductase family Cre10.g448900 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 9 - - g11035.t1 - - - - - - - - - Cre09.g393150 FOX1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 Multicopper ferroxidase Multicopper ferroxidase, iron-deficiency inducible; plasma membrane localized [PMID: 12481087]. Expression of this gene under iron-deficient conditions was studied by Busch et al. 2008 [PMID: 18363784]. Cis-acting regulatory elements were characterized b g9426.t1,Cre09.g393150.t1.1 PF07731,PF07732 PTHR10127,PTHR10127:SF48 - 1.-.-.- K00540 GO:0005507,GO:0016491,GO:0055114 - - - Cre06.g265550 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 15 - - g5963.t1,Cre06.g265550.t1.1 PF00069 PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G17890.1 CPK16 calcium-dependent protein kinase 16 Cre09.g395650 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 4 - - g9376.t1 - - - - - - - - - Cre10.g427300 RSP2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 Radial spoke protein 2 Radial spoke protein 2 (RSP2). Originally identified as PF24 locus [PMID: 16507594; PMID: 7204490; PMID: 14871938; GI:37528882] g10556.t1,Cre10.g427300.t1.1 PF05186 - - - - - - - - Cre02.g096500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g1960.t2, g1960.t1 PF00069 PTHR11795:SF313,PTHR11795 - - - GO:0004672,GO:0005524,GO:0006468 AT2G40580.1 - Protein kinase superfamily protein Cre01.g029200 ESP1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 Separase, cell cycle protease Separase homolog; Protease that cleaves cohesin proteins to initiate anaphase g665.t1,ESP1 PF03568 PTHR12792 - 3.4.22.49 K02365 GO:0005634,GO:0006508,GO:0008233 AT4G22970.1 AESP,ESP,RSW4 homolog of separase Cre09.g407120 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 - - g10094.t1,Cre09.g407120.t1.1 - - - - - - - - - Cre01.g005200 TGL2 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 15 - - g126.t1,TGL2 PF01764 PTHR21493,PTHR21493:SF9 - - - GO:0004806,GO:0006629 AT4G18550.1 - alpha/beta-Hydrolases superfamily protein Cre02.g114500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g2364.t1,Cre02.g114500.t1.1 PF03031,PF00097,PF06888 PTHR12210:SF5,PTHR12210 KOG1605 - - GO:0005515,GO:0016791 AT3G55960.1 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre16.g656750 - 0 7 1.0 1.0 0 7 1.0 1.0 M n downregulated 3 - - g15873.t1 PF03031 - - - - GO:0005515 - - - Cre09.g398450 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g9312.t1 - - - - - - - - - Cre12.g554550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g13443.t1,Cre12.g554550.t1.1 - - - - - - - - - Cre16.g685165 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g16819.t1,Cre01.g070200.t1.1, g16819.t2,Cre01.g070200.t2.1 - - - - - - - - - Cre04.g219200 CPL19 - 0 5 1.0 1.0 0 5 1.0 1.0 O Y - - - - g4777.t1,Cre04.g219200.t1.1 PF05057 PTHR12482 KOG4372 - - - AT1G29120.1 - Hydrolase-like protein family Cre01.g055350 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g1221.t1,Cre01.g055350.t1.1 - - - - - - - - - Cre08.g383750 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g9033.t1, g9033.t2 - - - - - - - - - Cre16.g657800 CCD3 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 5 Carotenoid cleavage dioxygenase Related to carotenoid 9,10-9\',10\' cleavage dioxygenase which in land plants participates in abscisic acid biosynthesis; could play a similar role (PMID: 16327238) g15894.t1,CCD3 PF03055 PTHR10543,PTHR10543:SF1 KOG1285 - - - AT1G78390.1 ATNCED9,NCED9 nine-cis-epoxycarotenoid dioxygenase 9 Cre03.g186500 HAT2 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 10 - - g3864.t1,HAT2 PF10394 PTHR12046 - 2.3.1.48 K11303 GO:0004402,GO:0016568 AT5G56740.1 HAC07,HAC7,HAG02,HAG2 histone acetyltransferase of the GNAT family 2 Cre09.g401812 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 10 - - g10001.t1,Cre02.g139600.t1.1, g10001.t2,Cre02.g139600.t2.1 PF00580 PTHR10887 - - - GO:0003677,GO:0004003,GO:0005524,GO:0006281 AT1G65810.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre16.g673393 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 11 - - g16711.t2,Cre01.g065450.t1.1, g16711.t1,Cre01.g065450.t2.1 PF00271,PF00270 PTHR13710 KOG0352 3.6.4.12 K03654 GO:0003676,GO:0004386,GO:0005524,GO:0006310,GO:0008026 AT4G35740.1 ATRECQ3,RecQl3 DEAD/DEAH box RNA helicase family protein Cre16.g674627 MKS1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 Ortholog of Meckel Syndrome 1 protein Ortholog of the human Meckel Syndrome 1 gene g16723.t1,Cre01.g066000.t1.1,Cre01.g066000.t1.2,MKS1 PF07162 PTHR12968 KOG4027 - - - - - - Cre05.g236501 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 8 - - g5439.t1,Cre05.g236501.t1.1 - - - - - - - - - Cre05.g236500 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 8 - - g5438.t1 PF04734 PTHR12670 KOG2232 - - - AT5G58980.1 - Neutral/alkaline non-lysosomal ceramidase Cre02.g109750 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 15 - - g2252.t1 - - - - - - - - - Cre09.g406650 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 10 - - g10082.t1,Cre09.g406650.t1.1 - - - - - - - - - Cre07.g326450 VPS5B - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 8 Subunit of Retromer complex Hypothetical Conserved Protein. Similar to VPS5/SNX1, component of Retromer Coat complex involved in endosomal to Golgi trafficking. g7591.t1,VPS5B PF00787,PF09325 PTHR10555:SF73,PTHR10555 KOG2273 - - GO:0005515,GO:0007154,GO:0035091 AT5G07120.1 SNX2b sorting nexin 2B Cre09.g392356 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g9722.t1,Cre02.g128050.t1.1 - - - - - - - - - Cre06.g284300 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g6610.t1 PF00612 - - - - GO:0005515 - - - Cre09.g394213 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 12 - - g9776.t1,Cre02.g130350.t1.1 PF03645 PTHR21255 KOG4081 - - - - - - Cre17.g704750 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g17083.t1 - PTHR12298,PTHR12298:SF13 - - - - - - - Cre07.g312900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g7241.t1 PF00632 PTHR11254,PTHR11254:SF73 KOG0170 6.3.2.19 K10590 GO:0005622,GO:0006464,GO:0016881 AT4G38600.1 KAK,UPL3 HEAT repeat ;HECT-domain (ubiquitin-transferase) Cre12.g516400 SPL24 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g12738.t1,SPL24, g12738.t2,Cre12.g516400.t1.1,SPL24 PF04146 PTHR12357 - - - - AT4G11970.2 - YTH family protein Cre06.g298700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g6909.t1,Cre06.g298700.t1.1 - - - - - - - - - Cre08.g378050 NUOP5 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 NADH:ubiquinone oxidoreductase 16 kDa subunit Mitochondrial NADH:ubiquinone oxidoreductase (Complex I) 16 kDa subunit precursor; gi.AAS58503 [PMID: 15450959; PMID: 15710684]; unknown evolutionary origin g8900.t1,Cre08.g378050.t1.1 - - - - - - - - - Cre01.g041700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g934.t1,Cre01.g041700.t1.1 - - - - - - - - - Cre06.g274994 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6166.t1,Cre06.g274994.t1.1 - - - - - - - - - Cre08.g379900 - 0 19 1.0 1.0 0 19 1.0 1.0 O n - 11 - - g8943.t1 PF01544 PTHR21535,PTHR21535:SF1 - - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 - - - Cre05.g241400 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g5565.t1 PF01794,PF08022 PTHR11972 - - - GO:0005506,GO:0009055,GO:0016021,GO:0016491,GO:0050660 AT5G50160.1 ATFRO8,FRO8 ferric reduction oxidase 8 Cre06.g285300 SUT1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g6632.t1,SUT1 PF07690,PF00083 PTHR24064:SF144,PTHR24064 KOG0255 - - GO:0016021,GO:0055085,GO:0022857 AT3G20660.1 4-Oct,AtOCT4 organic cation/carnitine transporter4 Cre02.g146650 SSA11,TTL3 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 16 Tubulin tyrosine ligase Tubulin tyrosine ligase. Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA). Previously annotated as SSA11 g2527.t1,SSA11,TTL3 PF03133 PTHR12241,PTHR12241:SF11 KOG2157 - - GO:0004835,GO:0006464 AT1G77550.1 - tubulin-tyrosine ligases;tubulin-tyrosine ligases Cre14.g629960 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g15171.t1 PF05023 - - - - GO:0010038,GO:0016756,GO:0046872,GO:0046938 AT5G44070.1 ARA8,ATPCS1,CAD1,PCS1 phytochelatin synthase 1 (PCS1) Cre10.g446300 SMM36 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g10981.t1,Cre10.g446300.t1.1,SMM36 PF08241 PTHR12176 KOG1271 - - GO:0008152,GO:0008168 AT3G60910.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre06.g258200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g5803.t1 PF00004 PTHR23069 - - - GO:0005524 AT3G15120.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre09.g400553 TOR1 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 Target of rapamycin, growth-regulatory PI3K-like protein kinase Homologue of TOR, a PI3K-like protein kinase with a role in the regulation of protein synthesis and cellular organization. Ataxia telangiectasia mutated (ATR) -related. Characterized by Diaz-Troya et al. 2008 [PMID: 18039939, 18670193] g9966.t1,Cre02.g137900.t1.1,TOR1, g9966.t2,Cre02.g137900.t2.1,TOR1 PF02260,PF02259,PF11865,PF08771,PF00454 PTHR11139,PTHR11139:SF9, PTHR11139:SF9,PTHR11139 KOG0891 - K07203 GO:0005515,GO:0016772,GO:0016773 AT1G50030.1, AT1G50030.2 TOR target of rapamycin Cre07.g349000 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g8118.t1 PF00069 PTHR23257:SF289,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre10.g444100 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g10920.t1 PF05049,PF04564 PTHR26393,PTHR26393:SF497 - - - GO:0005525,GO:0016020,GO:0016817,GO:0000151,GO:0004842,GO:0016567 AT1G01660.1 - RING/U-box superfamily protein Cre11.g475450 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n upregulated - - - g11810.t1,Cre11.g475450.t1.1 PF02809,PF00789,PF02099 PTHR14159 KOG2935 3.4.22.- K11863 GO:0005515 AT3G54130.1 - Josephin family protein Cre06.g253200 PKY1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 Protein tyrosine kinase Protein tyrosine kinase. Previously annotated as PKY1 g5674.t1,PKY1 PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT3G24715.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre14.g608250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g14663.t1,Cre14.g608250.t1.1 - - - - - - - - - Cre10.g459100 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - - - - g11260.t1 - - - - - - - - - Cre03.g145467 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 15 - - g2938.t1,Cre01.g059250.t1.1,Cre01.g059250.t1.2 PF00134 - - - - - - - - Cre02.g108150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g2217.t1 - - - - - - - - - Cre17.g708850 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g17172.t1 - - - - - - - - - Cre10.g451477 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g11094.t1 - - - - - - - - - Cre01.g019150 GCP4 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Gamma tubulin interacting protein Putative gamma-tubulin ring complex protein 4 g449.t1,Cre01.g019150.t1.1,GCP4 PF04130 PTHR19302,PTHR19302:SF10 KOG2065 - - GO:0000226,GO:0000922,GO:0005815 AT3G53760.1 ATGCP4,GCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 Cre16.g648451 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 17 - - g15694.t1 - - - - - - - - - Cre02.g086600 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g1607.t1,Cre02.g086600.t1.1 PF07366 - - - - - - - - Cre17.g706450 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g17120.t1 PF02931 PTHR18945,PTHR18945:SF96 - - - GO:0006811,GO:0016021,GO:0005230,GO:0006810,GO:0016020 - - - Cre03.g203350 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 9 - - g4252.t1 - - - - - - - - - Cre03.g203351 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 17 - - g4251.t1,Cre03.g203351.t1.1 - - - - - - - - - Cre11.g474850 PUS17 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g11798.t1,PUS17 PF00849 PTHR10436 - - - GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT4G21770.1 - Pseudouridine synthase family protein Cre06.g286650 DMC4 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - - - - g6660.t1,DMC4 PF00145 PTHR10629 - - - GO:0003677,GO:0006306 AT5G49160.1 DDM2,DMT01,DMT1,MET1,MET2,METI methyltransferase 1 Cre02.g145300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g2561.t1,Cre02.g145300.t1.1 PF04722 PTHR20383 KOG2424 - - GO:0004721,GO:0005634,GO:0006397 AT1G73820.1 - Ssu72-like family protein Cre01.g027300 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g624.t1 - - - - - - - - - Cre03.g148850 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 9 - - g3027.t1 PF00069 PTHR26263,PTHR26263:SF75 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT3G23310.1 - AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Cre13.g569950 HTR2 - 0 1 1.0 nan 0 1 1.0 nan C n - - Histone H3 Replication-linked Histone H3. PMID:8590479 g14022.t1,Cre13.g569950.t1.1,HTR2 PF00125 PTHR11426 KOG1745 - K11253 GO:0003677,GO:0000786,GO:0006334 AT4G40030.2 - Histone superfamily protein Cre02.g144650 PTB12 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - Sodium/phosphate symporter Putative phosphate transporter, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters; present in a cluster of four highly related PTB family members on scaffold 24, including PTB9, PTB5 and PTB4. g2578.t1,Cre02.g144650.t1.1,PTB12 PF01384 PTHR11101:SF7,PTHR11101 KOG2493 - K14640 GO:0005315,GO:0006817,GO:0016020 AT3G26570.1 ORF02,PHT2;1 phosphate transporter 2;1 Cre08.g370500 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 7 - - g8682.t1 - - - - - - - - - Cre02.g141686 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g2726.t1,Cre15.g647252.t1.1,Cre15.g647252.t1.2 - - - - - - - - - Cre09.g396846 - 0 13 1.0 1.0 0 13 1.0 1.0 O n upregulated 17 - - g9848.t1,Cre02.g133650.t1.1,Cre02.g133650.t1.2 PF00566 PTHR22957:SF99,PTHR22957 - - - GO:0005097,GO:0005622,GO:0032313 AT3G07890.1 - Ypt/Rab-GAP domain of gyp1p superfamily protein Cre16.g683483 - 0 1 1.0 nan 0 1 1.0 nan M n - - DNA nucleotide excision repair protein Conserved expressed protein of unknown function; similar to proteins from many eukaryotes, though it lacks any known domains. Presumably sxpressed from dicistronic message and involved in DNA repair, [see PMID: 12697762]; Expressed Protein. Putatively inv g16804.t1,Cre01.g069450.t1.1 - - - - - - AT5G04910.1 - - Cre16.g687901 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g16330.t1,Cre16.g687880.t1.2 - - - - - - - - - Cre17.g707500 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g17141.t1,Cre17.g707500.t1.1 - PTHR10903,PTHR10903:SF23 - - - - AT3G16620.1 ATTOC120,TOC120 translocon outer complex protein 120 Cre17.g747247 - 0 12 1.0 1.0 0 12 1.0 1.0 C n - 14 - - g18061.t1,Cre05.g229950.t1.1 - PTHR19959 - - - - AT5G37590.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre12.g534500 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 - - g13145.t1 PF07086 - KOG4054 - - - AT5G51510.1 - - Cre10.g423300 - 0 10 1.0 1.0 0 10 1.0 1.0 O n downregulated 9 - - g10470.t1 PF00326 PTHR11731:SF54,PTHR11731 - - - GO:0006508,GO:0008236 AT5G36210.1 - alpha/beta-Hydrolases superfamily protein Cre16.g671700 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 4 - - g16693.t1 PF00211 PTHR11920:SF112,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre16.g686050 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 10 - - g16374.t1 PF05277 PTHR17920,PTHR17920:SF3 - - - - AT4G36210.3 - Protein of unknown function (DUF726) Cre09.g410900 NAR2 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g10177.t1,Cre09.g410900.t1.1 - - - - - - - - - Cre02.g084600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 1 - - g1561.t1,Cre02.g084600.t1.1 - - - - - - - - - Cre13.g606600 CGK1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 9 cGMP-dependent protein kinase Putative cGMP-dependent protein kinase 1, alpha isozyme, serine/threonine kinase domain, protein kinase domain g14625.t1,CGK1 PF00069 PTHR24356:SF127,PTHR24356 KOG0586 - - GO:0004672,GO:0005524,GO:0006468 AT3G52890.1 KIPK KCBP-interacting protein kinase Cre06.g257450 ATPVL1,ATPvL1 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 Vacuolar ATP synthase subunit C proteolipid Vacuolar H(+)-ATPase V0 sector, c/c\' subunits, vacuolar ATP synthase 16 kDa proteolipid subunit g5786.t1,Cre06.g257450.t1.1,ATPVL1,ATPvL1 PF00137 PTHR10263 KOG0232 3.6.3.14 K02155 GO:0015078,GO:0015991,GO:0033177 AT1G19910.1 ATVHA-C2,AVA-2PE,AVA-P2 ATPase, F0/V0 complex, subunit C protein Cre09.g411050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g10179.t1 - - - - - - - - - Cre05.g240500 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 - - g5546.t1 PF07910,PF00569 PTHR12268:SF7,PTHR12268 - - - GO:0008270 AT5G24680.1 - Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 Cre02.g105050 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g2153.t1 - - - - - - AT5G24630.6 BIN4 double-stranded DNA binding Cre01.g017850 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 8 - - g421.t1,Cre01.g017850.t1.1 - - - - - - - - - Cre03.g175650 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 15 - - g3628.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre01.g034950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 - - g789.t1,Cre01.g034950.t1.1 PF00005 PTHR19211:SF14,PTHR19211 KOG0066 - K06184 GO:0005524,GO:0016887 AT3G54540.1 ATGCN4,GCN4 general control non-repressible 4 Cre04.g227000 MLH2 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 10 - - g4969.t1,MLH2 PF08676,PF01119,PF02518 PTHR10073:SF9,PTHR10073 KOG1978 - K10858 GO:0005524,GO:0006298,GO:0030983 AT4G02460.1 PMS1 DNA mismatch repair protein, putative Cre10.g461450 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 16 - - g11313.t1,Cre10.g461450.t1.1, g11313.t2 - - - - - - - - - Cre14.g625450 VTE3 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 7 MPBQ/MSBQ methyltransferase, chloroplastic MPBQ/MSBQ methyltransferase (plant VTE3 type), chloroplast precursor (tocopherol methyltransferase) (vitamin E methyltransferase). The vte3 mutant lacks alpha-tocopherol but accumulates beta-tocopherol [PMID: 19717743]. g15066.t1,Cre14.g625450.t1.1,VTE3, g15066.t2,VTE3 PF08241 PTHR10108:SF9,PTHR10108 KOG1540 - K12502 GO:0008152,GO:0008168 AT3G63410.1 APG1,E37,IEP37,VTE3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre03.g210961 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g4467.t1,Cre19.g756300.t1.1,Cre19.g756300.t1.2 PF03765,PF00650 PTHR10174:SF78,PTHR10174 KOG1470 - - - AT4G08690.1 - Sec14p-like phosphatidylinositol transfer family protein Cre14.g633100 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g15264.t1,Cre14.g633100.t1.1 PF12070 PTHR21243:SF4,PTHR21243 - - - - AT3G03570.1 - Protein of unknown function (DUF3550/UPF0682) Cre14.g630450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g15183.t1 - - - - - - - - - Cre12.g559900 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g13321.t1 - - - - - - - - - Cre16.g694800 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g15575.t1 PF05686 PTHR12203 - 2.4.1.- K13667 - AT3G61270.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre16.g673700 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g16647.t1,Cre16.g673700.t1.1 PF04950,PF08142 PTHR12858,PTHR12858:SF1 KOG1980 - - GO:0005634,GO:0042254 AT1G42440.1 - - Cre16.g694809 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 6 - - g15574.t1,Cre16.g694809.t1.1 - - - - - - - - - Cre03.g143787 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g2851.t1 - - - - - - - - - Cre12.g489350 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g12198.t1 - - - - - - - - - Cre17.g735800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g17799.t1,Cre17.g735800.t1.1 - - - - - - - - - Cre09.g412500 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g10212.t1,Cre09.g412500.t1.1, g10212.t2 - - - - - - - - - Cre03.g196950 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated - - - g4079.t1,Cre03.g196950.t1.1 PF03747 - - - - - - - - Cre08.g366500 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g8587.t1,Cre08.g366500.t1.1, g8587.t2 - - - - - - - - - Cre05.g232850 COX17 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 Cytochrome c oxidase assembly protein Putative cytochrome c oxidase assembly protein/Cu2+ chaperone COX17; gi|9022432; gb|AF280543; Chlamydomonas reinhardtii putative copper chaperone Cox17 g5117.t1,Cre05.g232850.t1.1,COX17 PF05051 PTHR16719 KOG3496 - K02260 GO:0005507,GO:0005758,GO:0006825,GO:0016531 AT3G15352.1 ATCOX17,COX17 cytochrome c oxidase 17 Cre17.g723750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g17505.t1 - - - - - - - - - Cre03.g160400 SAC1 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 15 Sulfur acclimation 1 protein, sodium/sulfate co-transporter Regulator of sulfur deficiency responses; putative membrane protein belonging to the SLC13A transporter family; predicted to enter the secretory pathway (TargetP v1.1); candidate plasma membrane sulfate sensor; NCBI accessions U47541 (mRNA), Q39593 and AA g3286.t1,Cre03.g160400.t1.1 PF03600,PF02080 PTHR10283:SF52,PTHR10283 - - - GO:0015137,GO:0015746,GO:0016021,GO:0055085,GO:0006813,GO:0008324 AT5G47560.1 ATSDAT,ATTDT,TDT tonoplast dicarboxylate transporter Cre01.g019450 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g455.t1, g455.t2 PF00179 PTHR24067:SF32,PTHR24067 KOG0424 - - GO:0016881 AT3G57870.1 AHUS5,ATSCE1,EMB1637,SCE1,SCE1A sumo conjugation enzyme 1 Cre17.g701100 CPK8 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g16999.t1,Cre17.g701100.t1.1,CPK8 PF00294 PTHR10584:SF1,PTHR10584 KOG2854 - - GO:0016798 AT1G49350.1 - pfkB-like carbohydrate kinase family protein Cre12.g484650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 15 - - g12029.t1 - - - - - - AT5G13020.1 - Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein Cre01.g037751 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g846.t1,Cre01.g037750.t1.3 - - - - - - - - - Cre12.g512950 CIT1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated 5 Chromate ion transporter - g12667.t1,Cre12.g512950.t1.1,CIT1 PF02417 - - - - GO:0015109,GO:0015703 - - - Cre05.g241650 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 7 - - g5322.t1 PF00326 PTHR11731,PTHR11731:SF7 - 3.4.19.1 K01303 GO:0006508,GO:0008236 AT4G14570.1 - acylaminoacyl-peptidase-related Cre05.g241655 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 2 - - g5350.t1,Cre82.g796100.t1.1,Cre82.g796100.t1.2,Cre05.g234450.t1.2 - - - - - - AT1G55480.1 ZKT protein containing PDZ domain, a K-box domain, and a TPR region Cre12.g544900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g13662.t1,Cre12.g544900.t1.1 PF00240 PTHR16470 - - - GO:0005515 AT1G51710.1 ATUBP6,UBP6 ubiquitin-specific protease 6 Cre11.g467795 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g11725.t1,Cre22.g762350.t1.1 PF00689,PF00702,PF00690,PF00122 PTHR24093:SF92,PTHR24093 KOG0202 3.6.3.8 K01537 GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT1G10130.1 ATECA3,ECA3 endoplasmic reticulum-type calcium-transporting ATPase 3 Cre04.g228000 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 16 - - g4989.t1 - PTHR21422,PTHR21422:SF5 - - - - AT5G58510.1 - - Cre06.g280300 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g6519.t1 PF00632 PTHR11254,PTHR11254:SF106 KOG0940 6.3.2.19 K10589 GO:0005622,GO:0006464,GO:0016881 AT3G17205.1 UPL6 ubiquitin protein ligase 6 Cre12.g488000 FFT4 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 14 - - g12227.t1,Cre12.g488000.t1.1,FFT4 PF00251 - KOG0228 3.2.1.26 K01193 - AT3G13790.1 ATBFRUCT1,ATCWINV1 Glycosyl hydrolases family 32 protein Cre11.g467793 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g11723.t1,Cre22.g762400.t1.1,Cre22.g762400.t1.2 - - - - - - - - - Cre11.g467792 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g11722.t1,Cre22.g762450.t1.1,Cre22.g762450.t1.2 - - - - - - - - - Cre16.g692400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g15630.t1 PF05712,PF11717 PTHR10880,PTHR10880:SF15 - - K11339 GO:0005634 AT1G02740.1 - MRG family protein Cre01.g028300 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g646.t1,Cre01.g028300.t1.1 - - - - - - - - - Cre12.g529150 PPP40,PP2C1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 12 Protein phosphatase 2C epsilon Protein phosphatase 2C epsilon; serine/threonine protein phosphatase; found in the flagellar proteome [PMID: 15998802]. Previously annoated as PP2C1 g13029.t1,Cre12.g529150.t1.1,PP2C1,PPP40 PF00481 PTHR13832,PTHR13832:SF186 KOG0698 - - GO:0003824 AT4G31750.1 WIN2 HOPW1-1-interacting 2 Cre17.g722400 MOT25 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g17475.t1,Cre17.g722400.t1.1,MOT25 - - - - - - - - - Cre02.g106350 HAP5,CGL68 - 0 7 1.0 1.0 0 7 1.0 1.0 O Y - 13 Vanadium-dependent haloperoxidase-like protein Acid phosphatase/vanadium-dependent haloperoxidase. Green-lineage conserved protein. Previously annotated as CGL68 g2180.t1,Cre02.g106350.t1.1,HAP5 PF02681 - - - K09775 - AT1G67600.1 - Acid phosphatase/vanadium-dependent haloperoxidase-related protein Cre14.g610501 SDR34 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 12 - - g14714.t1,Cre14.g610500.t1.2,SDR34 PF00106 PTHR24322 KOG1205 - - GO:0008152,GO:0016491 AT2G29260.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre06.g263450 EEF1A3 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g5919.t1,EEF1A3, g5919.t2,Cre06.g263450.t1.1,EEF1A3 PF00009,PF03144 PTHR23115:SF37,PTHR23115 KOG0459, KOG0458 3.6.5.3 K03231 GO:0003924,GO:0005525 AT5G60390.1 - GTP binding Elongation factor Tu family protein Cre06.g299700 SOUL1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 SOUL heme-binding protein - g6931.t1,Cre06.g299700.t1.1,SOUL1 PF04832 PTHR11220,PTHR11220:SF15 - - - - AT1G17100.1 - SOUL heme-binding family protein Cre17.g725750 - 0 12 1.0 1.0 0 12 1.0 1.0 O n upregulated 2 - - g17551.t1,Cre17.g725750.t1.1 PF05731 PTHR14202 KOG4465 - K11089 GO:0003723,GO:0030529 - - - Cre06.g306700 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated - - - g7104.t1 - - - - - - AT4G26470.1 - Calcium-binding EF-hand family protein Cre17.g724800 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g17528.t1 - - - - - - - - - Cre16.g683259 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g16802.t1,Cre01.g069350.t1.1,Cre01.g069350.t1.2 PF00153 PTHR24089,PTHR24089:SF127 KOG0758 - K03454 - AT1G79900.1 ATMBAC2,BAC2 Mitochondrial substrate carrier family protein Cre09.g389050 CNX5 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 6 Molybdopterin cofactor sulfurase family protein Pfam03473, MOSC domain; COG3217 g9518.t1,CNX5 - - KOG1073 - - - - - - Cre10.g430200 ARS3 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - Arylsulfatase Protein similar to periplasmic arylsulfatase g10624.t1,ARS3, g10624.t2,Cre10.g430200.t1.1,ARS3 PF00884 PTHR10342:SF2,PTHR10342 - - - GO:0008152,GO:0008484 - - - Cre16.g679700 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 14 - - g16516.t1 - - - - - - - - - Cre03.g146787 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g3004.t1 - - - - - - - - - Cre13.g585750 FAO11 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - - - - g14376.t1,Cre13.g585750.t1.1,FAO11 PF01266,PF00355 PTHR13847:SF20,PTHR13847 - - - GO:0016491,GO:0051537,GO:0055114 AT4G03280.1 PETC,PGR1 photosynthetic electron transfer C Cre12.g534750 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 - - g13151.t1 PF11510 - - - - - - - - Cre02.g074000 POC18 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 Centriole proteome protein Found in basal body proteome [PMID: 15964273] g1312.t2,POC18, g1312.t1,POC18 - PTHR22847 KOG0977 - - - AT5G66030.2 ATGRIP,GRIP Golgi-localized GRIP domain-containing protein Cre01.g003150 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 5 - - g74.t1,Cre01.g003150.t1.1 - - - - - - - - - Cre14.g616826 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g14860.t1 - - - - - - - - - Cre08.g384950 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9059.t1,Cre08.g384950.t1.1 PF00076 PTHR24012,PTHR24012:SF291 - - - GO:0003676 AT5G55670.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre13.g584800 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g14355.t1,Cre13.g584800.t1.1 - - - - - - - - - Cre06.g276100 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g6189.t2, g6189.t1,Cre06.g276100.t1.1 PF00400 PTHR14221 KOG0271, KOG0296 - - - AT5G24320.2 - Transducin/WD40 repeat-like superfamily protein Cre09.g390850 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g9475.t1 - - - - - - - - - Cre06.g282300 - 0 13 1.0 1.0 0 13 1.0 1.0 M n - 18 - - g6566.t1,Cre06.g282300.t1.1 - - - - - - - - - Cre16.g690000 CGL147 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g16196.t1,Cre16.g690000.t1.1 - - - - - - AT2G25260.1 - - Cre09.g392988 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g9741.t1,Cre02.g128850.t1.1 PF03732 - - - - - - - - Cre06.g264150 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 17 - - g5935.t1 - - KOG0845 - - - - - - Cre09.g391450 HCP1 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 Hybrid-cluster protein Prismane/CO dehydrogenase family g9463.t1,Cre09.g391450.t1.1,HCP1 PF03063 - - - - GO:0005737,GO:0016491,GO:0055114 - - - Cre14.g627750 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g15121.t1 PF01753 PTHR13244 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre03.g199100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g4346.t1,Cre03.g199100.t1.1 - - - - - - - - - Cre10.g451800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11099.t1,Cre10.g451800.t1.1 - - - - - - - - - Cre13.g591000 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g14493.t1,Cre13.g591000.t1.1 - - - - - - - - - Cre10.g435050 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 2 - - g10731.t2, g10731.t1 - - - - - - - - - Cre17.g713575 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17278.t1 - - - - - - - - - Cre01.g005651 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g137.t1 - - - - - - - - - Cre02.g084450 PHX5 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n downregulated 11 - - g1558.t1,Cre02.g084450.t1.1,PHX5 PF03171 PTHR10869 - - - GO:0016491 AT5G18900.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre05.g241634 HAV2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 Histone H2A variant - g5329.t1,Cre24.g770550.t1.1,HAV2 PF00125 PTHR23430 KOG1756 - - GO:0003677 AT1G08880.1 G-H2AX,GAMMA-H2AX,H2AXA,HTA5 Histone superfamily protein Cre07.g350850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8162.t1,Cre07.g350850.t1.1 - - - - - - - - - Cre12.g522350 TSW1 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g12864.t1,Cre12.g522350.t1.1,TSW1 PF00579 PTHR10055,PTHR10055:SF1 KOG2145 6.1.1.2 K01867 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418,GO:0004830,GO:0006436 AT3G04600.1 - Nucleotidylyl transferase superfamily protein Cre08.g359166 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8413.t1 - - - - - - - - - Cre06.g265200 HFO46,HFO34 - 0 1 1.0 nan 0 1 1.0 nan O n - - Histone H4 Replication-linked Histone H4. Also annotated as HFO34 and HFO46 g5956.t1,Cre06.g265200.t1.1,HFO34,HFO46 PF00125 PTHR10484 KOG3467 - K11254 GO:0000786,GO:0003677,GO:0005634,GO:0006334 AT2G28740.1 HIS4 histone H4 Cre02.g076987 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 - - g1386.t1,Cre02.g077000.t1.3 PF03330 - - - - - AT2G03090.1 ATEXP15,ATEXPA15,ATHEXP ALPHA 1.3,EXP15,EXPA15 expansin A15 Cre07.g326900 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g7602.t1,Cre07.g326900.t1.1 - - - - - - - - - Cre09.g397850 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 14 - - g9325.t1,Cre09.g397850.t1.1 - - - - - - - - - Cre12.g502050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g12532.t1,Cre12.g502050.t1.1 - - - - - - - - - Cre07.g331850 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 5 - - g7720.t1 - - - - - - - - - Cre02.g111000 CGL9 - 0 7 1.0 1.0 0 7 1.0 1.0 SP Y - 10 Putative ER protein Conserved expressed protein. Possible nucleotide-diphospho-sugar transferase, localized to the ER g2279.t1,Cre02.g111000.t1.1 PF03407 PTHR10994:SF3,PTHR10994 - - - GO:0005783 AT1G19360.1 - Nucleotide-diphospho-sugar transferase family protein Cre06.g259500 CYG2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Adenylate/guanylate cyclase Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens. Rhodopsin-like g5834.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre07.g330100 GTR25 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 7 Oligsaccharyl transferase STT3 subunit Part of the oligosaccharyl transferase (OTase) complex (a Glycosyltransferase) g7682.t1,Cre07.g330100.t1.1,GTR25 PF02516 PTHR13872,PTHR13872:SF18 KOG2292 2.4.1.119 K07151 GO:0004576,GO:0006486,GO:0016020 AT1G34130.1 STT3B staurosporin and temperature sensitive 3-like b Cre01.g055400 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 - - g1222.t1,Cre01.g055400.t1.1 PF05022 PTHR23216 - - - - AT5G57120.1 - - Cre07.g333150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 - - g7749.t1,Cre07.g333150.t1.1 - - - - - - - - - Cre07.g337450 CGL75 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 9 - - g7851.t1,CGL75 PF05686 PTHR12203 - - - - - - - Cre14.g619900 PHX22 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g14938.t1,PHX22 PF03171 PTHR10869 - - - GO:0016491 AT5G51880.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre12.g523000 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g12879.t1 PF00642 PTHR12506,PTHR12506:SF11 - - - GO:0003676,GO:0008270 AT3G02830.1 ZFN1 zinc finger protein 1 Cre12.g528050 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 7 - - g13005.t1,Cre12.g528050.t1.1 - - - - - - AT3G26580.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre15.g636350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g15350.t1 - - - - - - - - - Cre06.g260400 FAP287 - 0 1 1.0 nan 0 1 1.0 nan O n - - Ubiquitin-like Flagellar Associated Protein Ubiquitin-like Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g5852.t1,Cre06.g260400.t1.1 - - - - - - AT3G26980.1 MUB4 membrane-anchored ubiquitin-fold protein 4 precursor Cre01.g013500 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 12 - - g330.t2,Cre01.g013500.t1.1, g330.t1 PF01814 - - - - - - - - Cre06.g257150 RPL37A,RPL37a - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Ribosomal protein L37a, component of cytosolic 80S ribosome and 60S large subunit Cytosolic 80S ribosomal protein L37a; Cytosolic 60S large ribosomal subunit protein L37a g5778.t1,Cre06.g257150.t1.1,RPL37a PF01780 PTHR11517 KOG0402 - K02921 GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT3G60245.1 - Zinc-binding ribosomal protein family protein Cre13.g588000 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - - - g14422.t1,Cre13.g588000.t1.1 - - - - - - - - - Cre06.g263200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated - - - g5913.t1 - - - - - - - - - Cre01.g038250 SDC1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 2 Serine decarboxylase Serine decarboxylase involved in ethanolamine production for PtdEtn biosynthesis g856.t1,Cre01.g038250.t1.1,SDC1 PF00282 PTHR11999,PTHR11999:SF4 KOG0629 4.1.1.22 K01590 GO:0016831,GO:0019752,GO:0030170 AT1G43710.1 emb1075 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Cre05.g230900 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g5149.t1 PF01569 PTHR10165,PTHR10165:SF45 KOG3030 - - GO:0003824,GO:0016020 AT3G02600.1 ATLPP3,LPP3 lipid phosphate phosphatase 3 Cre09.g401950 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 12 - - g9225.t1 PF00027 - - - - - - - - Cre03.g183600 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g3805.t2, g3805.t1 - - - - - - - - - Cre16.g661976 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15986.t1 - - - - - - - - - Cre02.g107600 - 0 7 1.0 1.0 0 7 1.0 1.0 O Y - 10 - - g2206.t1,Cre02.g107600.t1.1 PF08544,PF00288 - - - - GO:0005524,GO:0016301,GO:0016310 AT3G01640.1 ATGLCAK,GLCAK glucuronokinase G Cre02.g097250 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 7 - - g1979.t1 PF08389,PF03810 PTHR12363,PTHR12363:SF19 KOG2081 - - GO:0006886,GO:0008565 AT5G62600.1 - ARM repeat superfamily protein Cre09.g408851 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g10134.t2, g10134.t1 PF00557 PTHR10804,PTHR10804:SF6 - 3.4.11.9 K01262 GO:0009987 AT4G36760.1 APP1,ATAPP1 aminopeptidase P1 Cre04.g217919 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 13 - - g4550.t1 - - - - - - - - - Cre04.g217914 FAP57 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 13 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; contains WD40 repeats; found in the flagellar proteome [PMID: 15998802] g4545.t1,Cre03.g210950.t2.1,FAP57, g4545.t2,Cre03.g210950.t1.1 PF00400 PTHR13720 KOG2106 - - - AT5G14050.1 - Transducin/WD40 repeat-like superfamily protein Cre04.g217915 NAR1.3 - 0 7 1.0 1.0 0 7 1.0 1.0 M n downregulated 9 Formate nitrite transporter Formate nitrite transporter, NCBI Accession number AY612643 g4546.t1,Cre03.g210900.t1.1,NAR1.3 PF01226 - - - - GO:0005215,GO:0006810,GO:0016020 - - - Cre04.g217916 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g4547.t1,Cre03.g210850.t1.1,Cre03.g210850.t1.2, g4547.t2,Cre03.g210850.t2.1 PF00248 PTHR11732,PTHR11732:SF14 KOG1575 - - GO:0016491,GO:0055114,GO:0006813,GO:0055085 AT1G04690.1 KAB1,KV-BETA1 potassium channel beta subunit 1 Cre03.g148201 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g3014.t1 - - - - - - - - - Cre04.g217910 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g4541.t1,Cre03.g211150.t1.1,Cre03.g211150.t1.2 PF00581 - - - - - AT4G27700.1 - Rhodanese/Cell cycle control phosphatase superfamily protein Cre04.g217912 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 - - g4543.t1 PF09764 PTHR13035 - - - GO:0016811 AT2G41760.1 - - Cre01.g003300 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g77.t1,Cre01.g003300.t1.1 PF01094 - - - - - - - - Cre02.g109550 AHD3,HSD1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 4 Homoserine dehydrogenase Putative homoserine dehydrogenase (EC 1.1.1.3); similar to HSDH portion of Arabidopsis bifunctional aspartate kinase/homoserine dehydrogenase (GenBank BAC43372), but lacking the aspartate kinase portion; 5\' end overlaps; predicted 3\' UTR of Chlamydomonas g2247.t1,Cre02.g109550.t1.1,AHD3,HSD1 PF03447,PF00742 PTHR21499:SF3,PTHR21499 KOG0455 - - GO:0016491,GO:0050661,GO:0055114,GO:0006520 AT4G19710.2 AK-HSDH,AK-HSDH II aspartate kinase-homoserine dehydrogenase ii Cre03.g210401 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 14 - - g4461.t1,Cre19.g756050.t1.1,Cre19.g756050.t1.2 PF10294 PTHR14614 - - - - AT1G73320.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre09.g394769 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g9791.t1,Cre02.g131100.t1.1 PF03133 PTHR12241,PTHR12241:SF63 - - - GO:0004835,GO:0006464 - - - Cre07.g336500 OPR114 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 17 - - g7831.t1 - - - - - - - - - Cre01.g025150 CPLD15 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y upregulated 4 Predicted protein Conserved organelle protein with lipase active site g578.t1,Cre01.g025150.t1.1 - - - - - - AT5G17670.1 - alpha/beta-Hydrolases superfamily protein Cre02.g142150 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g2648.t1,Cre02.g142150.t1.1 - PTHR22593,PTHR22593:SF2 - - - - AT1G34350.1 - - Cre05.g244100 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g5253.t1 - - - - - - - - - Cre07.g332350 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g7732.t1 - - - - - - - - - Cre06.g255550 EEP3 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g5743.t2,EEP3, g5743.t1,EEP3 PF03372 - - - - - - - - Cre06.g278128 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 12 - - g6274.t1,Cre13.g594900.t1.1,Cre13.g594900.t1.2 PF00385 PTHR10629 - - - GO:0003677,GO:0006306 - - - Cre14.g614850 ANK17,FAP33 - 0 19 1.0 1.0 0 19 1.0 1.0 O n downregulated 15 Flagellar Associated Protein with ankyrin repeats Protein of unknown function with ankyrin repeats, flagella associated; found in the flagellar proteome as FAP33 [PMID: 15998802]. Phosphorylation characterized by Boesger et al. (2009) [PMID: 19429781] g14814.t1,ANK17 PF00023 PTHR24193 KOG4412 - - GO:0005515 AT2G03430.1 - Ankyrin repeat family protein Cre08.g374350 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g8820.t1,Cre08.g374350.t1.1 PF01847 - - - - - - - - Cre01.g041583 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g931.t1, g931.t2 PF03366 PTHR23195 - - - GO:0005634,GO:0006355 AT2G18000.2 TAF14 TBP-associated factor 14 Cre14.g618979 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g14916.t1 PF01753 - - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre09.g407501 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 4 - - g10103.t1,Cre09.g407501.t1.1 PF00686 - - - - GO:0003824,GO:0005975 AT5G01260.1 - Carbohydrate-binding-like fold Cre09.g402750 COG2 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Component of oligomeric golgi complex Conserved Hypothetical Protein. Similar to COG2, component of oligomeric golgi complex 2, involved in vesicle tethering and other Golgi functions g9206.t1,Cre09.g402750.t1.1,COG2 PF12022,PF06148 PTHR12961 KOG2307 - - GO:0007030,GO:0015031,GO:0016020 AT4G24840.1 - - Cre02.g117781 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g2443.t1 - - - - - - - - - Cre02.g108601 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g2226.t1 PF00069,PF07714 PTHR23257:SF313,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT1G14000.1 VIK VH1-interacting kinase Cre14.g617500 FAP132,RSP14 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 12 Radial spoke protein 14 An Armadillo repeat protein in radial spoke stalk [PMID: 16507594]; Found in the flagellar proteome as FAP132 [PMID: 15998802] g14878.t1,Cre14.g617500.t1.1,FAP132 - - - - - - AT1G01950.3 ARK2 armadillo repeat kinesin 2 Cre16.g683931 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g16808.t1,Cre01.g069700.t1.1 - - - - - - - - - Cre01.g000450 ERR2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g12.t1,Cre01.g000450.t1.1,ERR2 PF03407 PTHR10994:SF5,PTHR10994 - - - GO:0005783 AT2G35610.1 XEG113 xyloglucanase 113 Cre01.g023650 - 0 11 1.0 1.0 0 11 1.0 1.0 C n - 7 - - g545.t1 PF00324 PTHR11785,PTHR11785:SF13 KOG1289 - - GO:0006810,GO:0016020,GO:0055085,GO:0003333,GO:0015171 AT2G01170.1 BAT1 bidirectional amino acid transporter 1 Cre07.g334900 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 4 - - g7798.t1 - - - - - - - - - Cre05.g247450 RDP5,CGL56 - 0 9 1.0 1.0 0 9 1.0 1.0 C Y - 6 Putative rhodanese-like protein Putative rhodanese-like protein. Rhodanese is a sulphurtransferase involved in cyanide detoxification with a common evolutionary ancestry to a large family of proteins. This rhodanese like domain may not be catalytic. This is much larger than other RDP g5183.t1,Cre05.g247450.t1.1,CGL56 - - - - - - AT3G59780.1 - Rhodanese/Cell cycle control phosphatase superfamily protein Cre17.g741550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g17936.t1,Cre17.g741550.t1.1 PF04676,PF04677 PTHR12072 KOG2477 - - - AT1G56290.1 - CwfJ-like family protein Cre03.g205950 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 3 - - g4192.t1 PF00069 PTHR24361,PTHR24361:SF97 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT3G50530.1 CRK CDPK-related kinase Cre11.g480050 EXN14 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 2 - - g11915.t1,EXN14 PF00651 PTHR24413 - - - GO:0005515 AT1G01640.1 - BTB/POZ domain-containing protein Cre14.g618350 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g14896.t1 - - - - - - - - - Cre02.g101600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g2072.t1 PF11735 - - - - - - - - Cre01.g024350 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g563.t1,Cre01.g024350.t1.1 PF02990 PTHR10766,PTHR10766:SF14 KOG1277 - - GO:0016021 AT2G01970.1 - Endomembrane protein 70 protein family Cre08.g375000 DSP - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 9 - - g8836.t1,DSP PF00782,PF09192 PTHR10159 - - - GO:0006470,GO:0008138 AT5G23720.1 PHS1 dual specificity protein phosphatase family protein Cre10.g435600 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g10742.t1 PF09799 - - - - - - - - Cre12.g560500 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g13309.t1,Cre12.g560500.t1.1 - - - - - - - - - Cre10.g462250 REF1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 RNA Export Factor Nuclear protein that binds to RNA and to Mex67p, required for export of poly(A)+ mRNA from the nucleus; member of the REF (RNA and export factor binding proteins) family; homologue of YRA1 and YRA2 yeast proteins. Contains one RNA recognition motif (RRM). g11331.t1,Cre10.g462250.t1.1,REF1 PF00076 PTHR19965,PTHR19965:SF8 KOG0533 - K12881 GO:0003676 AT5G59950.4 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre16.g675350 - 0 11 1.0 1.0 0 11 1.0 1.0 M n - 7 - - g16611.t1 PF12580,PF00082 PTHR10795,PTHR10795:SF2 KOG1114 3.4.14.10 K01280 GO:0004252,GO:0006508 AT4G20850.1 TPP2 tripeptidyl peptidase ii Cre18.g749847 DLD1 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 Dihydrolipoyl dehydrogenase Dihydrolipoyl dehydrogenase, mitochondrial precursor; glycine cleavage system L protein (dihydrolipoamide dehydrogenase, EC 1.8.1.4), GCSL. Previously annotated as DLDH1. g18113.t1,Cre31.g780600.t1.1,Cre31.g780600.t1.2,DLD1, g18113.t2,Cre31.g780600.t2.1,DLD1 PF07992,PF00070,PF02852 PTHR22912,PTHR22912:SF20 KOG1335 1.8.1.4 K00382 GO:0016491,GO:0050660,GO:0055114,GO:0004148,GO:0005737,GO:0045454 AT1G48030.1 mtLPD1 mitochondrial lipoamide dehydrogenase 1 Cre10.g458650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g11251.t1 - - - - - - - - - Cre14.g619750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated - - - g14933.t1 - - - - - - - - - Cre03.g161900 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g3317.t1 - - - - - - - - - Cre12.g496850 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 9 - - g12648.t1 - - - - - - - - - Cre01.g034850 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 11 - - g786.t1 - - - - - - - - - Cre06.g297700 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 17 - - g6886.t1 PF00515 PTHR19959 - - K10407 GO:0005515 AT4G28080.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre03.g184400 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g3821.t1,Cre03.g184400.t1.1 PF00293 PTHR22769 - - - GO:0016787 AT1G68760.1 ATNUDT1,ATNUDX1,NUDX1 nudix hydrolase 1 Cre13.g585200 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - - - - g14365.t1,Cre13.g585200.t1.1 - - - - - - - - - Cre12.g547800 SNE15 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 10 - - g13596.t1,SNE15 PF01073 PTHR10366,PTHR10366:SF9 KOG1502 - - GO:0003854,GO:0006694 AT5G19440.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre03.g155600 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g3174.t1 - - - - - - - - - Cre03.g152650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3108.t1 - - - - - - - - - Cre03.g206817 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g4428.t1,Cre19.g754650.t1.1 - - - - - - - - - Cre12.g497100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g12643.t1,Cre12.g497100.t1.1 - - - - - - - - - Cre12.g497101 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 1 - - g12644.t1,Cre12.g497050.t1.3 - - - - - - - - - Cre02.g104650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 1 - - g2141.t1, g2141.t2 PF00076 PTHR24012:SF254,PTHR24012 KOG0127 - K14573 GO:0003676 AT2G21440.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre12.g490451 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g12177.t1,Cre12.g490400.t1.3 - - - - - - - - - Cre26.g756997 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g18297.t1 - - - - - - - - - Cre08.g358567 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 11 - - g8382.t1,Cre28.g776750.t1.1, g8382.t2,Cre28.g776750.t2.1 - - - - - - - - - Cre07.g320350 CDJ5 - 0 1 1.0 nan 0 1 1.0 nan O Y downregulated 7 Chloroplast DnaJ-like protein DnaJ-like protein; probably targeted to chloroplast, as judged from presence of N-ter extension and from homology to Arabidopsis NP_197715 and rice Q7XQ89 predicted by TargetP to be chloroplast-targeted; contains N-terminal J-domain (pfam00226) and Ferred g7408.t1,Cre07.g320350.t1.1 PF00226 PTHR25040:SF173,PTHR25040 - - - GO:0031072 AT5G23240.1 - DNAJ heat shock N-terminal domain-containing protein Cre08.g358565 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g8381.t1 - - - - - - - - - Cre08.g358564 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g8380.t1,Cre28.g776800.t1.1 PF06985 - - - - - - - - Cre08.g358563 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g8379.t1,Cre28.g776850.t1.1,Cre28.g776850.t1.2 PF00575,PF07717,PF00270 PTHR18934:SF68,PTHR18934 - - - GO:0003723,GO:0003676,GO:0005524,GO:0008026 AT3G26560.1 - ATP-dependent RNA helicase, putative Cre08.g358560 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g8376.t1,Cre28.g777000.t1.1 - PTHR22870:SF116,PTHR22870 - - - - AT5G63860.1 UVR8 Regulator of chromosome condensation (RCC1) family protein Cre12.g514300 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g12693.t1,Cre12.g514300.t1.1 PF03798 PTHR12560 KOG1607 - - GO:0016021 AT3G25540.1 LAG1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein Cre08.g358568 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n downregulated 8 - - g8383.t1,Cre28.g776700.t1.1,Cre28.g776700.t1.2 - PTHR20961 - - - - - - - Cre16.g671850 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g16690.t1,Cre16.g671850.t1.1 PF01490 - KOG1303 - - - - - - Cre07.g313350 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g7253.t1,Cre07.g313350.t1.1 PF07969 - - - - - AT3G55850.2 LAF3,LAF3 ISF1,LAF3 ISF2 Amidohydrolase family Cre03.g160050 FAP184 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 14 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation g3277.t1,Cre03.g160050.t1.1 - PTHR15654 - - - - - - - Cre16.g685573 FAP214 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 13 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g16158.t1,Cre01.g064750.t1.1,Cre01.g064750.t1.2 PF00168 PTHR10774 - - - GO:0005515 AT1G05500.1 ATSYTE,NTMC2T2.1,NTMC2TYPE2.1,SYT5,SYTE Calcium-dependent lipid-binding (CaLB domain) family protein Cre01.g042352 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - - - - g949.t1 PF00089,PF00530 PTHR19331,PTHR19331:SF418 KOG3592 - - GO:0004252,GO:0006508,GO:0005044,GO:0016020 - - - Cre06.g305302 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g7067.t1 - - - - - - - - - Cre09.g387134 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g9578.t1,Cre02.g121500.t1.1,Cre02.g121500.t1.2 PF04379 PTHR14289,PTHR14289:SF14 - - - - - - - Cre12.g548750 - 0 3 1.0 1.0 0 3 1.0 1.0 - n - - - - g13574.t1 - - - - - - - - - Cre12.g510800 CHLI2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 Magnesium chelatase subunit I Magnesium-chelatase subunit chlI, chloroplast precursor (Mg-protoporphyrin IX chelatase); Orthologous to the bacterial magnesium chelatase subunits BchI, and other plant magnesium chelatase subunits ChlI [PMID: 9359397]; forms an ATP dependent hexameric r g12332.t1,Cre12.g510800.t1.1,CHLI2 PF01078 - - - - GO:0015979,GO:0015995,GO:0016851 AT4G18480.1 CH-42,CH42,CHL11,CHLI-1,CHLI1 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre01.g046850 UBC13 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1041.t1,Cre01.g046850.t1.1,UBC13 PF00179,PF00627 PTHR24067:SF28,PTHR24067 KOG0418 6.3.2.19 K04649 GO:0016881,GO:0005515 AT5G50870.1 UBC27 ubiquitin-conjugating enzyme 27 Cre14.g613501 ZXE5 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g14784.t1,ZXE5 - PTHR13789,PTHR13789:SF65 - - - - - - - Cre12.g534980 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g13160.t1,Cre12.g535000.t1.3, g13160.t2,Cre12.g535000.t2.1 - - - - - - - - - Cre05.g238400 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 14 - - g5497.t1 - - - - - - - - - Cre16.g666200 CSK4 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 17 - - g16077.t1,Cre16.g666200.t1.1,CSK4 PF00069 PTHR11909:SF20,PTHR11909 KOG1164 - - GO:0004672,GO:0005524,GO:0006468 AT2G25760.1 - Protein kinase family protein Cre12.g491500 UBC1,UBA2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 Ubiquitin-activating enzyme E1 Ubiquitin-activating enzyme E1, ThiF family. May possess 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase activity. Wang et al. 2008 [PMID: 18493050] call this SAE2, but that conflicts with SAE2 already in the catalog g12155.t1,Cre12.g491500.t1.1,UBA2,UBC1 PF00899,PF10585,PF02134,PF08825 PTHR10953:SF6,PTHR10953 KOG2015 6.3.2.19 K10686 GO:0003824,GO:0005524,GO:0006464,GO:0008641,GO:0016881,GO:0045116 AT5G19180.1 ECR1 E1 C-terminal related 1 Cre17.g717800 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 8 - - g17372.t1,Cre17.g717800.t1.1 PF04097 PTHR11225,PTHR11225:SF1 KOG2168 - K14309 GO:0005643,GO:0006810 AT2G41620.1 - Nucleoporin interacting component (Nup93/Nic96-like) family protein Cre07.g349700 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 5 - - g8136.t1,Cre07.g349700.t1.1 PF05368 PTHR14194 KOG4039 - - - AT2G34460.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre02.g116200 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g2405.t1,Cre02.g116200.t1.1 - - - - - - - - - Cre13.g579598 SSS3 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 17 - - g14240.t2,Cre13.g579600.t2.1,SSS3, g14240.t1,Cre13.g579600.t1.3,SSS3 PF00534,PF08323 PTHR12526,PTHR12526:SF17 - - - GO:0009058 AT1G11720.2 ATSS3,SS3 starch synthase 3 Cre11.g467557 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g11486.t1 PF07801 - - - - - AT2G22480.1 PFK5 phosphofructokinase 5 Cre11.g467556 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 13 - - g11485.t1,Cre44.g788150.t1.1 - - - - - - - - - Cre03.g144011 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 16 - - g2864.t3,Cre01.g056350.t3.1, g2864.t2,Cre01.g056350.t4.1, g2864.t1,Cre01.g056350.t2.1, g2864.t4,Cre01.g056350.t1.1 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre07.g331962 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g7722.t1,Cre07.g331950.t1.2 - - - - - - - - - Cre16.g655100 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g15836.t1 PF04266 PTHR12963 - - - - AT2G20410.1 - RNA-binding ASCH domain protein Cre11.g467552 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g11481.t1 PF00365 PTHR13697 - - - GO:0003872,GO:0005945,GO:0006096 AT2G22480.1 PFK5 phosphofructokinase 5 Cre01.g037000 CPY,SCPL49 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 7 - - g830.t2,CPY, g830.t1,CPY PF00450 PTHR11802,PTHR11802:SF6 KOG1282 - - GO:0004185,GO:0006508 AT3G10410.1 CPY,SCPL49 SERINE CARBOXYPEPTIDASE-LIKE 49 Cre11.g467559 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 16 - - g11488.t1,Cre18.g750450.t1.1 - PTHR23125:SF209,PTHR23125 - - - - AT1G15740.1 - Leucine-rich repeat family protein Cre13.g603250 CLR6,OPR61 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 3 - - g14546.t1,Cre13.g603250.t1.1,CLR6 - - - - - - - - - Cre17.g738950 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g17872.t1,Cre17.g738950.t1.1 PF01753 - - - - GO:0008270 - - - Cre12.g495350 POC12 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 10 Centriole proteome protein Protein found in basal body proteome [PMID: 15964273]. Human homolog encoded by gene MKS1 defective in Meckel syndrome. g12128.t1,POC12 PF07679,PF07162 PTHR12968 KOG4446 - - - - - - Cre02.g147800 SEC14 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 3 Putative phosphoglyceride transfer protein Similar to SEC14 cytosolic factor, necessary for vesicle budding from the Golgi complex (PMID: 9461221); there are two other highly similar proteins in Chlamydomonas (ID:105305 and 169226) g2505.t1,Cre02.g147800.t1.1 PF03765,PF00650 PTHR23324,PTHR23324:SF5 KOG1471 - - - AT2G21540.1 ATSFH3,SFH3 SEC14-like 3 Cre16.g647700 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 - - g15678.t1 - - - - - - - - - Cre12.g485900 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g12279.t1,Cre12.g485900.t1.1 - - - - - - - - - Cre17.g731850 SDR29 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g17688.t1,Cre17.g731850.t1.1,SDR29 PF00106 PTHR24315 KOG0725 1.3.1.34 K13237 GO:0008152,GO:0016491 AT3G12800.1 DECR,SDRB short-chain dehydrogenase-reductase B Cre12.g549400 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g13560.t1 - - - - - - - - - Cre11.g483351 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g11998.t1 PF12499 - - - - - - - - Cre06.g255300 CGLD28 - 0 1 1.0 nan 0 1 1.0 nan C Y - 5 - - g5738.t1,Cre06.g255300.t1.1 - - - - - - AT1G67080.1 ABA4 abscisic acid (aba)-deficient 4 Cre04.g223700 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g4882.t1,Cre04.g223700.t1.1 PF02622 - - - - - AT1G33780.1 - Protein of unknown function (DUF179) Cre01.g047450 CPDL17,OTU2,CPLD17 - 0 1 1.0 nan 0 1 1.0 nan O Y - 12 Otubain cysteine protease Otubain cysteine protease. Conserved expressed organelle-targeted protein. Family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila, contains OTU-domain. g1055.t1,CPLD17,OTU2 PF02338 PTHR12419 - - - - AT3G57810.2 - Cysteine proteinases superfamily protein Cre12.g483500 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g12002.t1 PF06101 PTHR16166,PTHR16166:SF68 - - - - AT4G17140.3 - pleckstrin homology (PH) domain-containing protein Cre14.g634150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15290.t1 - - - - - - - - - Cre10.g455050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11168.t1,Cre10.g455050.t1.1, g11168.t2 PF02373 - - - - - - - - Cre17.g728950 RFD2 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 - - g17618.t1,RFD2 PF01872,PF08719 PTHR11079:SF14,PTHR11079 - - - GO:0008703,GO:0009231 AT3G47390.2 PHS1 cytidine/deoxycytidylate deaminase family protein Cre10.g438400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g10799.t1 - - - - - - - - - Cre17.g738600 RLS5 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 16 RegA/RlsA-like protein Member of a family of proteins [PMID: 16720695, 16622701] related to Volvox carteri RegA, which is a putative transcription repressor [PMID: 9895312] containing a SAND domain (IPR000770 SAND; PF01342). g17864.t1,RLS5 PF01342 PTHR21328:SF12,PTHR21328 - - - GO:0003677,GO:0005634 - - - Cre02.g109126 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g2237.t1 - - - - - - - - - Cre12.g531850 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g13087.t1,Cre12.g531850.t1.1 - - - - - - - - - Cre12.g536800 CGL52 - 0 7 1.0 1.0 0 7 1.0 1.0 C Y upregulated 15 Predicted protein Conserved expressed protein of unknown function; similar to protein of unknown function in Arabidopsis and rice g13201.t1,Cre12.g536800.t1.1 PF10184 - - - - - AT1G65230.1 - Uncharacterized conserved protein (DUF2358) Cre03.g211969 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g4476.t1,Cre19.g756750.t1.1 - - - - - - AT2G20310.1 RIN13 RPM1 interacting protein 13 Cre12.g493900 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g12072.t1 - - - - - - - - - Cre14.g625950 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g15077.t1 PF01743 PTHR13734:SF22,PTHR13734 - - - GO:0003723,GO:0006396,GO:0016779 AT1G28090.1 - Polynucleotide adenylyltransferase family protein Cre12.g500150 ALD5 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 12 - - g12573.t1,ALD5 PF00171 PTHR11699,PTHR11699:SF46 KOG2450 1.2.1.3 K00128 GO:0008152,GO:0016491,GO:0055114 AT1G23800.1 ALDH2B,ALDH2B7 aldehyde dehydrogenase 2B7 Cre07.g334575 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 9 - - g7790.t1,Cre07.g334564.t1.2 - - - - - - - - - Cre12.g508700 ELG2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g12379.t1,Cre12.g508700.t1.1,ELG2 PF09258 PTHR11062,PTHR11062:SF12 - - - GO:0016758,GO:0031227 AT3G55830.1 EPC1 Nucleotide-diphospho-sugar transferases superfamily protein Cre09.g394028 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 16 - - g9770.t1,Cre02.g130100.t1.1 - - - - - - - - - Cre16.g677989 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g16754.t1,Cre01.g067250.t1.1 PF06977 - - - - - - - - Cre03.g144907 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g2909.t1,Cre01.g058050.t1.1,Cre01.g058050.t1.2 - PTHR12855,PTHR12855:SF10 KOG2656 - K11324 - AT2G47210.1 - myb-like transcription factor family protein Cre16.g653350 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 1 - - g15800.t1,Cre16.g653350.t1.1 PF03331 - - - - GO:0008759,GO:0009245 AT1G24880.1 - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein Cre04.g216300 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g4641.t1,Cre04.g216300.t1.1 - - - - - - AT1G48170.1 - - Cre10.g429250 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 4 - - g10604.t1 PF00069 PTHR23257,PTHR23257:SF99 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT2G17700.1 - ACT-like protein tyrosine kinase family protein Cre02.g087250 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g1619.t1 - - - - - - - - - Cre03.g196200 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g4064.t1, g4064.t2 PF01738 PTHR17630,PTHR17630:SF20 KOG3043 - - GO:0016787 AT2G32520.1 - alpha/beta-Hydrolases superfamily protein Cre06.g261750 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 1 - - g5882.t1,Cre06.g261750.t1.1 PF01062 - KOG4090 - - - AT2G45870.1 - Bestrophin-like protein Cre09.g391615 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g9700.t1 - - - - - - - - - Cre17.g741300 - 0 11 1.0 1.0 0 11 1.0 1.0 O n upregulated - - - g17931.t1 - - KOG3227 - - - - - - Cre06.g287800 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g6684.t1,Cre06.g287800.t1.1 - - - - - - AT2G15910.1 - CSL zinc finger domain-containing protein Cre13.g575900 SE - 0 1 1.0 nan 0 1 1.0 nan O Y - - - - g14154.t1,Cre13.g575900.t1.1 PF12066,PF04959 - - - - - AT2G27100.1 SE C2H2 zinc-finger protein SERRATE (SE) Cre06.g287200 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 3 - - g6672.t2,Cre06.g287200.t1.1, g6672.t1 - - - - - - - - - Cre03.g146507 SPT2 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 8 Serine palmitoyltransferase Similar to serine palmitoyltransferase, first step in sphingolipid biosynthesis g2990.t1,Cre01.g061750.t1.1,Cre01.g061750.t1.2,SPT2 PF00155 PTHR13693:SF2,PTHR13693 KOG1358 2.3.1.50 K00654 GO:0009058,GO:0016769,GO:0030170 AT4G36480.1 ATLCB1,EMB2779,FBR11,LCB1 long-chain base1 Cre04.g225700 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g4932.t1,Cre04.g225700.t1.1 - - - - - - - - - Cre10.g427650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g10563.t1,Cre10.g427650.t1.1 - - - - - - - - - Cre09.g399450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g9286.t1,Cre09.g399450.t1.1 - - - - - - - - - Cre12.g522700 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 16 - - g12873.t1,Cre12.g522700.t1.1 - - - - - - - - - Cre16.g661638 - 0 4 1.0 1.0 0 4 1.0 1.0 - n - 17 - - g15977.t1 - - - - - - - - - Cre11.g478100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 - - g11869.t1,Cre11.g478100.t1.1 - - - - - - - - - Cre07.g347700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g8091.t1 PF10220 - - - - - - - - Cre16.g687200 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 - - g16346.t1 - - - - - - AT4G13220.1 - - Cre17.g730483 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - - - - g17652.t1,Cre17.g730455.t1.2 - - - - - - - - - Cre04.g227700 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n downregulated 11 - - g4983.t1 - - - - - - - - - Cre12.g511300 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 14 - - g12322.t1 - - - - - - - - - Cre13.g579767 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14244.t1 - - - - - - - - - Cre14.g624600 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g15048.t1 - - - - - - AT3G53440.1 - Homeodomain-like superfamily protein Cre17.g706550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g17122.t1 - PTHR11711,PTHR11711:SF55 - - - GO:0005525 - - - Cre17.g737702 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 11 - - g17846.t1 PF01822 PTHR24420:SF495,PTHR24420 KOG4462 - - - AT5G46330.1 FLS2 Leucine-rich receptor-like protein kinase family protein Cre09.g387300 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g9559.t1 PF04696 - - - - - AT1G15200.1 - protein-protein interaction regulator family protein Cre16.g682363 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g16794.t1,Cre01.g069050.t1.1 PF11397 - - - - - - - - Cre16.g682369 CTP1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - Heavy metal transporting ATPase Heavy metal transporting ATPase (HMA), P-type ATPase superfamily, membrane protein; copper-transporting P-type ATPase, related to AtRAN1 and AtHMA5 [PMID: 15710683] g16149.t1,Cre01.g064350.t1.1,Cre01.g064350.t1.2,CTP1 PF00702,PF00122,PF00403 PTHR24093:SF39,PTHR24093 KOG0207 3.6.3.4 K01533 GO:0003824,GO:0008152,GO:0000166,GO:0046872,GO:0030001 AT1G63440.1 HMA5 heavy metal atpase 5 Cre16.g691888 FBP3 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - - Fructose-2,6-bisphosphate 2-phosphatase - g16879.t1,Cre01.g072800.t2.1,FBP3, g16879.t2,Cre01.g072800.t1.1,FBP3 PF01591,PF00300 PTHR10606,PTHR10606:SF23 KOG0234 2.7.1.105,3.1.3.46 K01103 GO:0003873,GO:0005524,GO:0006000,GO:0003824,GO:0006003 AT1G07110.1 ATF2KP,F2KP,FKFBP fructose-2,6-bisphosphatase Cre06.g278650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 15 - - g6480.t1 - PTHR10217:SF393,PTHR10217 - - - - - - - Cre03.g162900 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 3 - - g3339.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre15.g639308 OPR91 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g15422.t1,Cre15.g639308.t1.1 PF08373 - - - - - - - - Cre02.g104000 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 12 - - g2127.t1,Cre02.g104000.t1.1 - - - - - - AT2G04790.2 - - Cre04.g217550 EIF3C - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 Eukaryotic translation initiation factor 3, subunit C Eukaryotic translation initiation factor 3, subunit C. Also known as eIF3 subunit 8, EIF3S8, eIF3-p110, and eIF3c g4529.t1,EIF3C PF05470,PF01399 PTHR13937 KOG1076 - K03252 GO:0003743,GO:0005852,GO:0006413,GO:0005515 AT3G56150.1 ATEIF3C-1,ATTIF3C1,EIF3C,EIF3C-1,TIF3C1 eukaryotic translation initiation factor 3C Cre12.g519150 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 16 - - g12798.t1,Cre12.g519150.t1.1 PF00622,PF04564 PTHR13363 - 6.3.2.19 K12169 GO:0005515,GO:0000151,GO:0004842,GO:0016567 AT2G22010.2 RKP related to KPC1 Cre03.g207800 ADH5 - 0 21 1.0 1.0 0 21 1.0 1.0 M n upregulated 3 - - g4153.t1,Cre03.g207800.t1.1,ADH5 PF08240,PF00107 PTHR11695,PTHR11695:SF285 KOG0023 - - GO:0008270,GO:0016491,GO:0055114 AT4G37990.1 ATCAD8,CAD-B2,ELI3,ELI3-2 elicitor-activated gene 3-2 Cre03.g202875 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 9 - - g4262.t1,Cre03.g202875.t1.1 - - - - - - - - - Cre12.g541777 - 0 1 1.0 nan 0 1 1.0 nan M Y - 2 - - g13787.t1,Cre27.g774300.t1.1 PF09273,PF00856 PTHR13271 KOG1337 - - GO:0005515 AT1G24610.1 - Rubisco methyltransferase family protein Cre10.g432850 FAP77 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG1 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400] g10680.t1,Cre10.g432850.t1.1 - - - - - - - - - Cre12.g541950 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g13733.t1,Cre12.g541950.t1.1, g13733.t2 - - - - - - - - - Cre07.g321550 BLZ5 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 15 - - g7432.t1,Cre07.g321550.t1.1,BLZ5 PF00170 - - - - GO:0003700,GO:0006355,GO:0043565,GO:0046983 - - - Cre06.g296350 ULP1 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 1 - - g6854.t1,ULP1 PF02902 PTHR12606 - - - GO:0006508,GO:0008234 AT3G06910.1 ULP1A UB-like protease 1A Cre10.g465726 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g11412.t1 - - - - - - - - - Cre10.g445952 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g10973.t1 - - - - - - - - - Cre17.g738100 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 13 - - g17854.t1 - - - - - - - - - Cre06.g248750 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 - - g5572.t1 - - - - - - AT1G73090.1 - - Cre12.g512450 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 - - g12297.t2, g12297.t1 PF04749 - - - - - - - - Cre14.g626600 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g15091.t1, g15091.t2 PF01753 PTHR13244 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre09.g411150 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 3 - - g10181.t1 - - - - - - - - - Cre07.g337125 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 - - g7844.t1,Cre07.g337118.t1.2 - - - - - - - - - Cre17.g731466 - 0 1 1.0 nan 0 1 1.0 nan M n - 18 - - g17675.t1,Cre17.g731466.t1.1 PF00651 - - - - GO:0005515 - - - Cre14.g619250 - 0 17 1.0 1.0 0 17 1.0 1.0 C n - 15 - - g14923.t1,Cre14.g619250.t1.1, g14923.t2 - - - - - - - - - Cre09.g401850 - 0 17 1.0 1.0 0 17 1.0 1.0 M n upregulated - - - g9227.t1 PF00069 PTHR23257,PTHR23257:SF99 - - - GO:0004672,GO:0005524,GO:0006468 AT2G23200.1 - Protein kinase superfamily protein Cre05.g238650 PHC5 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 Cell wall protein pherophorin-C5 Pherophorin-C5 (PHC5) [PMID: 16367971; Genbank entry DQ196111]; extracellular matrix protein (cell wall protein); belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain. (partial sequence, codes o g5502.t1,PHC5 PF12499 - - - - - - - - Cre16.g663000 PRX - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g16007.t1,Cre16.g663000.t1.1,PRX PF01152 - - - - GO:0015671,GO:0019825 - - - Cre13.g578850 MOT27 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g14220.t1 - PTHR15157:SF2,PTHR15157 - - - - - - - Cre02.g095900 ROC114,ROC108 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g1947.t1,Cre02.g095900.t1.1,ROC108,ROC114 - - - - - - - - - Cre10.g436300 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 4 - - g10757.t1,Cre10.g436300.t1.1 - - - - - - - - - Cre13.g574350 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 15 - - g14118.t1,Cre13.g574350.t1.1 PF00069 PTHR23257:SF343,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre02.g095300 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g1935.t1 PF00069 PTHR24055:SF162,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT1G67580.1 - Protein kinase superfamily protein Cre17.g709850 ACK2 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 11 Acetate kinase Acetate Kinase (EC 2.7.2.1); Acetokinase; compartmentation unclear g17192.t1,Cre17.g709850.t1.1,ACK2 PF00871 PTHR21060,PTHR21060:SF11 - 2.7.2.1 K00925 GO:0005622,GO:0008152,GO:0016301,GO:0016310,GO:0016774,GO:0006082 - - - Cre16.g662750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 16 - - g16001.t1,Cre16.g662750.t1.1 PF01152 - - - - GO:0015671,GO:0019825 - - - Cre02.g109716 - 0 6 1.0 1.0 0 6 1.0 1.0 - n - - - - g2251.t1 - - - - - - - - - Cre07.g351850 NAT21 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g8185.t1,Cre07.g351850.t1.1,NAT21 PF00583 - - - - GO:0008080,GO:0008152 - - - Cre02.g076700 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 13 - - g1380.t1 - - - - - - - - - Cre12.g546200 RBL5 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 Rhomboid-like protein Similar to rhomboid intramembrane proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); possibly organelle-targeted; lacks the catalytic Ser and conserved Asn, and hence probably inactive as a protease g13631.t1,Cre12.g546200.t1.1,RBL5 PF01694 - - - - GO:0004252,GO:0016021 AT5G25752.1 ATRBL11,RBL11 rhomboid-like protein 11 Cre06.g269908 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 2 - - g6056.t1 - - - - - - - - - Cre06.g292850 CDC6 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 Pre-initiation complex, subunit CDC6 Homologous to eukaryotic CDC6; AAA+ superfamily ATPase g6784.t1,Cre06.g292850.t1.1 - PTHR10763 - - - - AT2G29680.2 ATCDC6,CDC6 cell division control 6 Cre03.g159016 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g3256.t4,Cre03.g159078.t2.1, g3256.t3,Cre03.g159078.t4.1, g3256.t1,Cre03.g159078.t1.2, g3256.t2,Cre03.g159078.t3.1 PF00069 PTHR23257:SF303,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre08.g380350 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g8952.t1,Cre08.g380350.t1.1 PF01753 PTHR14331:SF1,PTHR14331 - - - GO:0008270 AT5G65450.1 UBP17 ubiquitin-specific protease 17 Cre09.g392393 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g9723.t1,Cre02.g128100.t1.1,Cre02.g128100.t1.2 - - - - - - - - - Cre01.g009450 DNJ22 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 DnaJ-like protein DnaJ-like protein; contains N-terminal J-domain (pfam00226) g238.t1 PF00226 PTHR24077:SF69,PTHR24077 - - - GO:0031072 AT4G39960.1 - Molecular chaperone Hsp40/DnaJ family protein Cre06.g274400 SMM19,HTA42 - 0 11 1.0 1.0 0 11 1.0 1.0 O Y - 8 - - g6154.t1,Cre06.g274400.t1.1,SMM19 PF05891 PTHR12753 - - - GO:0008168 AT5G44450.1 - methyltransferases Cre13.g566850 SOUL2 - 0 1 1.0 nan 0 1 1.0 nan O Y upregulated 2 SOUL heme-binding protein Similar to plant SOUL protein, putative heme-binding domain; found in Chlamydomonas phosphoproteome [PMID: 16524901]; peptide data at N-term of model suggests that phosphorylation interferes with N-terminal Met cleavage: normally the MSSI... sequence shou g13948.t1,Cre13.g566850.t1.1 PF04832 PTHR11220,PTHR11220:SF1 - - - - AT2G37970.1 SOUL-1 SOUL heme-binding family protein Cre15.g641800 RAB8,RABE1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 Small Rab-related GTPase Expressed protein. Similar to the RabE/Rab8 class of small GTPases; homologue of YptV2 [gi|549809|sp|P36861|YPTV2_VOLCA]. Previously annotated as RABE1 g15474.t1,Cre15.g641800.t1.1,RAB8,RABE1 PF00071 PTHR24073,PTHR24073:SF232 KOG0078 - - - AT3G53610.1 ATRAB8,AtRab8B,AtRABE1a,RAB8 RAB GTPase homolog 8 Cre16.g648700 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 17 - - g15699.t2, g15699.t1 PF01061,PF00005 PTHR19241 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT2G37280.1 ATPDR5,PDR5 pleiotropic drug resistance 5 Cre12.g558150 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 5 - - g13367.t1,Cre12.g558150.t1.1 - - - - - - - - - Cre10.g464450 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 16 - - g11381.t1 PF07707,PF00651 PTHR24412 - - - GO:0005515 - - - Cre06.g267500 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g6003.t1,Cre06.g267500.t1.1 PF00227 PTHR11599:SF7,PTHR11599 KOG0180 3.4.25.1 K02735 GO:0004298,GO:0005839,GO:0051603 AT1G77440.1 PBC2 20S proteasome beta subunit C2 Cre03.g210177 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g4459.t1 PF00036 PTHR23050 KOG0027 - - - AT5G37780.1 ACAM-1,CAM1,TCH1 calmodulin 1 Cre04.g218550 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4764.t1,Cre04.g218550.t1.1 - - - - - - - - - Cre09.g405701 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g10059.t1 - - - - - - - - - Cre09.g399911 CDC20 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Activator and specificity subunit of anaphase promoting complex CDC20 homolog. Activator and specificity subunit for anaphase promoting complex. Subunit 1 of Anaphase Promoting Complex. Cell cycle regulated E3 ubiquitin ligase. Related to fizzy/cdh1 proteins g9276.t1,Cre62.g792700.t1.1,CDC20 PF00400 PTHR19918 KOG0305 - K03363 - AT4G33270.1 CDC20.1 Transducin family protein / WD-40 repeat family protein Cre10.g417950 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g10350.t1,Cre10.g417950.t1.1 PF00400,PF08145 PTHR17605 KOG0650 - - GO:0005634,GO:0006364 AT2G40360.1 - Transducin/WD40 repeat-like superfamily protein Cre14.g617151 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g14870.t1,Cre14.g617151.t1.1 PF01342 PTHR24223,PTHR24223:SF223 - - - GO:0003677,GO:0005634 - - - Cre14.g617150 RLS4 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g14869.t1,RLS4 PF03062 PTHR13285,PTHR13285:SF15 KOG3860 - - - AT1G57600.1 - MBOAT (membrane bound O-acyl transferase) family protein Cre12.g530300 FKB6,FKB16-3 - 0 1 1.0 nan 0 1 1.0 nan C Y - 6 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase); probably directed to thylakoid lumen (homology to AtFKBP16-3 and bipartite cTP with RR motif) g13054.t1,Cre12.g530300.t1.1,FKB6 PF00254 PTHR10516,PTHR10516:SF15 KOG0552 5.2.1.8 K01802 GO:0006457 AT2G43560.1 - FKBP-like peptidyl-prolyl cis-trans isomerase family protein Cre07.g333350 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 2 - - g7751.t1,Cre07.g333350.t1.1 - - - - - - - - - Cre17.g722300 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 - - g17473.t1 - - - - - - - - - Cre14.g623926 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g15036.t1 PF07714 PTHR23257 - - - GO:0004672,GO:0006468 AT2G40860.1 - protein kinase family protein / protein phosphatase 2C ( PP2C) family protein Cre01.g019550 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g457.t1,Cre01.g019550.t1.1 PF00023 PTHR24158,PTHR24158:SF306 - - - GO:0005515 AT5G07270.1 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana Cre03.g144084 RBL7 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 Rhomboid-like protease Similar to rhomboid intramembrane proteases, involved in signaling, mitochondrial morphogenesis and apoptosis (PMID: 17114579); possibly organelle-targeted g2867.t1,Cre01.g056500.t1.1,RBL7 PF01694 PTHR22936 - 3.4.21.105 K02857 GO:0004252,GO:0006508,GO:0016021 AT1G63120.1 ATRBL2,RBL2 RHOMBOID-like 2 Cre17.g725650 NBS - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g17549.t1,NBS PF01758 PTHR10361,PTHR10361:SF0 KOG2718 - - GO:0006814,GO:0008508,GO:0016020 AT1G78560.1 - Sodium Bile acid symporter family Cre14.g629920 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g15170.t1 PF00909 PTHR11730:SF8,PTHR11730 KOG0682 - - GO:0008519,GO:0016020,GO:0072488 AT4G13510.1 AMT1;1,ATAMT1,ATAMT1;1 ammonium transporter 1;1 Cre07.g332400 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g7733.t1,Cre07.g332400.t1.1 - - - - - - - - - Cre16.g661400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g15971.t1 - PTHR23304,PTHR23304:SF78 KOG3671 - - - - - - Cre01.g020182 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g469.t1,Cre01.g020150.t1.3 - - - - - - - - - Cre09.g400516 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9965.t1,Cre02.g137850.t1.1,Cre02.g137850.t1.2 PF03798 PTHR12560 KOG1607 - - GO:0016021 AT1G13580.2 LAG13 LAG1 longevity assurance homolog 3 Cre12.g500700 LCL2 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 16 - - g12562.t1,LCL2 - - - - - - - - - Cre14.g629650 NIK1 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 Nickel transporter Related to plant putative high affinity nickel transporter family g15164.t1 PF03824 - - - - GO:0016021,GO:0030001,GO:0046872,GO:0055085 AT4G35080.3 - high-affinity nickel-transport family protein Cre02.g118100 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 15 - - g2450.t1,Cre02.g118100.t1.1 - - - - - - - - - Cre01.g004800 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 17 - - g116.t1,Cre01.g004800.t1.1 - - - - - - - - - Cre16.g678661 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g16760.t1 - - - - - - - - - Cre07.g323950 PHX23 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g7483.t1,Cre07.g323950.t1.1,PHX23 - - KOG1591 - - - - - - Cre03.g145427 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g2936.t1,Cre01.g059150.t1.1 PF04140 PTHR12714 KOG2628 - - GO:0004671,GO:0006481,GO:0016021 AT5G08335.1 ATICMTB,ATSTE14B,ICMTB Isoprenylcysteine carboxyl methyltransferase (ICMT) family Cre16.g669525 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 7 - - g16288.t1 PF00005 PTHR24221 - - - GO:0005524,GO:0016887 AT4G25450.3 ATNAP8,NAP8 non-intrinsic ABC protein 8 Cre02.g119850 PDE9 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 17 3\',5\'-cyclic-nucleotide phosphodiesterase Similar to calcium/calmodulin-dependent 3\',5\'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain g2489.t1,PDE9 PF00233 PTHR11347:SF75,PTHR11347 - 3.1.4.17 K01120 GO:0004114,GO:0007165 - - - Cre10.g462600 PUS15 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 1 - - g11339.t1,PUS15 PF00849 PTHR10436,PTHR10436:SF42 - - - GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT4G21770.1 - Pseudouridine synthase family protein Cre13.g575750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g14150.t1,Cre13.g575750.t1.1 PF00753 - - - - GO:0016787 - - - Cre12.g546600 FEA2 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 4 Fe-assimilating protein High-CO2 inducible, periplasmic protein. Cis-acting regulatory elements were characterized by Fei et al. 2009 [PMID: 19351705]. g13623.t1 PF07692 - - - - - - - - Cre12.g486700 FAP271 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 13 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g12257.t1, g12257.t2,Cre12.g486700.t1.1 - - - - - - - - - Cre17.g744747 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g18011.t1, g18011.t2 - - - - - - - - - Cre01.g021850 HEL2 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 9 - - g505.t1,HEL2 PF00271,PF00929,PF00270 PTHR24031,PTHR24031:SF174 - 3.6.4.12 K03655 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT2G01440.1 - DEAD/DEAH box RNA helicase family protein Cre01.g070932 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g1288.t1,Cre23.g765800.t1.1 PF03110 - - - - GO:0003677,GO:0005634 AT1G76580.1 - Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein Cre12.g544111 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g13683.t1 PF07282 - - - - - - - - Cre12.g544112 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g13684.t1 - - - - - - - - - Cre12.g544113 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 - - g13685.t1 PF00160 PTHR11071,PTHR11071:SF79 KOG0880 - - GO:0003755,GO:0006457 AT5G13120.1 ATCYP20-2,CYP20-2 cyclophilin 20-2 Cre08.g369900 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8668.t1,Cre08.g369900.t1.1 PF00069 PTHR26266:SF16,PTHR26266 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT3G17850.1 - Protein kinase superfamily protein Cre17.g721150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g17449.t1,Cre17.g721150.t1.1 - - - - - - AT5G46620.1 - - Cre03.g205428 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g4204.t1,Cre03.g205428.t1.1 - - - - - - - - - Cre04.g227950 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 14 - - g4988.t1 - - - - - - - - - Cre13.g585651 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g14374.t1 PF02190 - - - - GO:0004176,GO:0006508 AT2G25740.1 - ATP-dependent protease La (LON) domain protein Cre03.g150750 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g3066.t1,Cre03.g150750.t1.1, g3066.t2 - - - - - - - - - Cre13.g591700 TTL15 - 0 1 1.0 nan 0 1 1.0 nan C n - 13 Putative tubulin tyrosine ligase - g14508.t1,TTL15 PF03133 PTHR12241,PTHR12241:SF62 - - - GO:0004835,GO:0006464 AT1G77550.1 - tubulin-tyrosine ligases;tubulin-tyrosine ligases Cre14.g621400 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 - - g14975.t1 - - - - - - - - - Cre16.g667800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g16282.t1,Cre16.g667800.t1.1 - - - - - - - - - Cre03.g199311 VPS16 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 8 VPS16-like protein Expressed protein. Vacuoleless, VPS16 homolog; member of the VPS16/VCL1 class of proteins involved in vacuolar trafficking. Previously annotated as VCL1 g4360.t1,Cre19.g751600.t1.1,VPS16 PF04840,PF04841 PTHR12811 KOG2280 - - GO:0005737,GO:0006886 AT2G38020.1 EMB258,MAN,VCL1 vacuoleless1 (VCL1) Cre30.g757997 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g18324.t1,Cre53.g790600.t1.1,Cre53.g790600.t1.2 PF03372,PF00078 PTHR19446 - - - GO:0003723,GO:0003964,GO:0006278 - - - Cre12.g559053 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13344.t1 - - - - - - - - - Cre17.g716700 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 15 - - g17351.t1 - - - - - - - - - Cre12.g559050 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 9 - - g13343.t1,Cre12.g559050.t1.1 - PTHR23125,PTHR23125:SF208 - - - - AT2G06040.1 - - Cre03.g164600 PMH1,ACA3,PMA3 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 13 P-type ATPase/cation transporter, plasma membrane P-type ATPase/cation transporter, plasma membrane. Probably hydrogen exporting. Previously annotated as PMH1 g3374.t1,Cre03.g164600.t1.1,ACA3,PMA3,PMH1 PF00702,PF00690,PF00122 PTHR24093:SF61,PTHR24093 KOG0202 - - GO:0003824,GO:0008152,GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0000166,GO:0046872 AT1G80660.1 AHA9,HA9 H(+)-ATPase 9 Cre12.g521700 SSS6 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 17 - - g12851.t1,Cre12.g521700.t1.1,SSS6 PF00534,PF08323 PTHR12526:SF17,PTHR12526 KOG4462 2.4.1.21 K00703 GO:0009058 AT5G24300.1 ATSS1,SSI,SSI1 Glycogen/starch synthases, ADP-glucose type Cre06.g264050 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g5933.t1,Cre06.g264050.t1.1 PF04366 PTHR15629,PTHR15629:SF5 - - - - AT3G43230.1 - RING/FYVE/PHD-type zinc finger family protein Cre07.g354650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g8250.t1,Cre07.g354650.t1.1 - - - - - - - - - Cre10.g429750 - 0 28 1.0 1.0 0 28 1.0 1.0 O n - 4 - - g10616.t1 PF00989 PTHR10919,PTHR10919:SF256 KOG3262 - - GO:0006355 - - - Cre06.g265900 - 0 1 1.0 nan 0 1 1.0 nan SP n - 5 - - g5969.t1,Cre06.g265900.t1.1 - PTHR11845 KOG3197 - K07023 - AT2G23820.2 - Metal-dependent phosphohydrolase Cre17.g710700 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g17210.t2, g17210.t1,Cre17.g710700.t1.1 - - - - - - - - - Cre05.g246250 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 - - g5210.t1 PF01753 - - - - GO:0008270 - - - Cre10.g439100 CCT1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 T-complex protein 1, alpha subunit T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha) (TCPA); subunit of cytosolic chaperonin complex g10814.t1,Cre10.g439100.t1.1,CCT1 PF00118 PTHR11353:SF20,PTHR11353 KOG0360 - - GO:0005524,GO:0006457,GO:0051082,GO:0044267 AT3G20050.1 ATTCP-1,TCP-1 T-complex protein 1 alpha subunit Cre12.g548300 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g13585.t1,Cre12.g548300.t1.1 - - - - - - - - - Cre03.g181100 - 0 13 1.0 1.0 0 13 1.0 1.0 O n downregulated 14 - - g3753.t1 - - - - - - - - - Cre11.g481650 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g11959.t1,Cre11.g481650.t1.1 - PTHR13161,PTHR13161:SF11 - - - - - - - Cre03.g146567 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 6 - - g2993.t1 - - - - - - - - - Cre10.g464325 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g11378.t1 - - - - - - - - - Cre12.g547300 - 0 12 1.0 1.0 0 12 1.0 1.0 C n - 7 - - g13607.t1 PF01061,PF00005 PTHR19241,PTHR19241:SF28 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT2G01320.3 - ABC-2 type transporter family protein Cre10.g466600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g11436.t2, g11436.t1 - PTHR24782:SF30,PTHR24782 - - - - - - - Cre01.g054250 CYP4,CYP743A1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - Cytochrome P450, CYP5 superfamily, CYP5A family Cytochrome P450, CYP5 superfamily, CYP5A family. Previously annotated as CYP743A1. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP743 family has best BLAST hits to g1198.t1,Cre01.g054250.t1.1,CYP4 PF00067 PTHR24301,PTHR24301:SF127 KOG0158 1.14.14.1 K07424 GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT2G26170.1 CYP711A1,MAX1 cytochrome P450, family 711, subfamily A, polypeptide 1 Cre07.g330800 OPR30 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g7697.t1,Cre07.g330800.t1.1 - - - - - - - - - Cre03.g156750 CCT5 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 T-complex protein 1, epsilon subunit T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon) (TCPE); subunit of cytosolic chaperonin complex; found in the flagellar proteome [PMID: 15998802] g3200.t1,Cre03.g156750.t1.1,CCT5 PF00118 PTHR11353:SF25,PTHR11353 KOG0357 - - GO:0005524,GO:0006457,GO:0051082,GO:0044267 AT1G24510.1 - TCP-1/cpn60 chaperonin family protein Cre11.g477733 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g11860.t1,Cre11.g477733.t1.1 - - - - - - - - - Cre12.g542150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g13729.t1,Cre12.g542150.t1.1 - - - - - - - - - Cre01.g046950 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g1043.t1,Cre01.g046950.t1.1 - - - - - - - - - Cre03.g152450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g3104.t1,Cre03.g152450.t1.1 PF00498 PTHR23308:SF2,PTHR23308 KOG1881 - - GO:0005515 AT5G38840.1 - SMAD/FHA domain-containing protein Cre03.g165550 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 - - g3397.t1,Cre03.g165550.t1.1 - - - - - - - - - Cre05.g239900 ARS15 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 11 - - g5532.t1,ARS15 PF00884 PTHR10342:SF2,PTHR10342 KOG3867 - - GO:0008152,GO:0008484 - - - Cre15.g637761 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g15380.t2, g15380.t3,Cre15.g637761.t1.1, g15380.t1 PF00005,PF06472 PTHR11384 KOG0064 - K05676 GO:0005524,GO:0016887,GO:0006810,GO:0016020 AT4G39850.1 ACN2,AtABCD1,CTS,PED3,PXA1 peroxisomal ABC transporter 1 Cre12.g538300 LF5,FAP247 - 0 7 1.0 1.0 0 7 1.0 1.0 O n downregulated 14 - - g13235.t1,FAP247 PF00069 PTHR24056,PTHR24056:SF178 KOG0593 2.7.11.22 K08824 GO:0004672,GO:0005524,GO:0006468 AT3G48750.1 CDC2,CDC2A,CDC2AAT,CDK2,CDKA1,CDKA;1 cell division control 2 Cre17.g734134 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g17748.t1 - - - - - - - - - Cre11.g467727 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g11657.t1,Cre22.g765050.t1.1 PF01844,PF03235 - - - - GO:0003676,GO:0004519 - - - Cre11.g467720 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 14 - - g11650.t1,Cre22.g765450.t1.1,Cre22.g765450.t1.2, g11650.t2,Cre22.g765450.t2.1 PF07714 PTHR23257:SF300,PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre10.g441300 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - - - g10859.t1 PF00847 - - - - GO:0003700,GO:0006355 AT4G37750.1 ANT,CKC,CKC1,DRG Integrase-type DNA-binding superfamily protein Cre13.g574500 FER2 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 17 Ferritin subunit Ferritin, chloroplast precursor; pre-apoferritin gi|20530724|gb|AF503338 g14122.t1,FER2 PF00210 PTHR11431:SF8,PTHR11431 KOG2332 - - GO:0006879,GO:0008199,GO:0005488,GO:0006826 AT3G56090.1 ATFER3,FER3 ferritin 3 Cre03.g182450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g3781.t1,Cre03.g182450.t1.1 PF00763,PF02882 PTHR10025 KOG0089 - - GO:0003824,GO:0009396 AT4G00620.1 - Amino acid dehydrogenase family protein Cre17.g713051 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g17266.t1,Cre17.g713082.t1.3 PF00226 PTHR25040 - - - GO:0031072 AT3G17830.1 - Molecular chaperone Hsp40/DnaJ family protein Cre02.g114950 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g2375.t1 - - - - - - - - - Cre13.g569500 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 15 - - g14013.t2, g14013.t1,Cre13.g569500.t1.1 PF02668 PTHR10696 - - - GO:0016491,GO:0055114 - - - Cre02.g098950 SYP72 - 0 1 1.0 nan 0 1 1.0 nan O Y - 10 Late endosomal Qc-SNARE protein, Syx6/Tlg1/Syp5/6-family (Qc.III.b) Late endosomal Qc-SNARE protein, Syx6/Tlg1/Syp5/6-family (Qc.III.b). Expressed Protein. Involved in endosomal/cell plate trafficking; part of 2-member gene family of tandemly repeated genes (<-71 <-72). Class Qc.III.b SNARE, targeted to late endosomes g2012.t1,Cre02.g098950.t1.1 PF05739 PTHR12380 KOG3202 - K08506 GO:0005515 AT3G09740.1 ATSYP71,SYP71 syntaxin of plants 71 Cre09.g393250 - 0 5 1.0 1.0 0 5 1.0 1.0 M n upregulated 7 - - g9424.t1 PF01758 PTHR18640:SF1,PTHR18640 - - - GO:0006814,GO:0008508,GO:0016020 AT3G56160.1 - Sodium Bile acid symporter family Cre13.g568672 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g13994.t1,Cre13.g568672.t1.1 - - - - - - - - - Cre11.g467729 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g11659.t1,Cre22.g765001.t1.1,Cre22.g765001.t1.2 - - - - - - - - - Cre12.g507700 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g12404.t1 PF11732,PF11262 PTHR21597 KOG1874 - K12879 - AT1G24706.2 AtTHO2,THO2 THO2 Cre12.g532650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g13105.t1,Cre12.g532650.t1.1 PF10345 - - - - - - - - Cre06.g306800 CGL126 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 1 - - g7107.t1,Cre06.g306800.t1.1 - PTHR12209 KOG3087 - - - AT5G26110.2 - Protein kinase superfamily protein Cre09.g391023 - 0 1 1.0 nan 0 1 1.0 nan O n - - Serine/threonine protein phosphatase PP2A, metallophosphoesterase Serine/threonine protein phosphatase PP2A, metallophosphoesterase. A Calcineurin-like phosphoesterase. Previously annotated as PP2A3, but that gene model maps to the UTR region of this model g9684.t1,Cre02.g126400.t1.1,Cre02.g126400.t1.2 PF00149 PTHR11668:SF21,PTHR11668 KOG0372 - - GO:0016787 AT3G58500.1 PP2A-4 protein phosphatase 2A-4 Cre12.g494350 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g12061.t1,Cre12.g494350.t1.1 PF02990 PTHR10766,PTHR10766:SF1 KOG1278 - - GO:0016021 AT5G35160.2 - Endomembrane protein 70 protein family Cre13.g604550 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g14584.t1,Cre13.g604550.t1.1 - PTHR10588 - - - - AT5G22320.1 - Leucine-rich repeat (LRR) family protein Cre07.g319500 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 16 - - g7390.t1 PF05023 - - - - GO:0010038,GO:0016756,GO:0046872,GO:0046938 AT5G44070.1 ARA8,ATPCS1,CAD1,PCS1 phytochelatin synthase 1 (PCS1) Cre01.g068012 PPR5 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 12 Pentatrichopeptide repeat protein Hypothetical protein, containing 3 PPR repeats g1280.t1,Cre23.g766200.t1.1,Cre23.g766200.t1.2,PPR5 PF01535 PTHR24633:SF14,PTHR24633 - - - - AT2G31400.1 GUN1 genomes uncoupled 1 Cre16.g652350 FAP183 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; FAP243 is likely a part of FAP183. g15778.t1,Cre16.g652350.t1.1 - - KOG4016 - - - - - - Cre12.g495401 POC12 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g12129.t1,Cre12.g495400.t1.3,POC12 PF00069 PTHR11584:SF253,PTHR11584 - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre03.g192050 FTR1 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 4 Iron permease, membrane protein Iron transporter Ftr1, Ftr1p, Plasma membrane iron permease [PMID: 12455693] g3975.t1 PF03239 - - - - GO:0016020,GO:0055085 - - - Cre06.g308400 PTN1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 PTEN PI-3 phosphatase Homolog of Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases. A phosphotase with homology to tensin. Antagonizes PI3 kinases to regulate phosphatidyl inositol phosphorylation at 3 position g7139.t2,PTN1, g7139.t1,Cre06.g308400.t1.1,PTN1 - PTHR12305 KOG1720 3.1.3.67 K01110 - AT3G19420.1 ATPEN2,PEN2 PTEN 2 Cre05.g244800 NUOAF3 - 0 10 1.0 1.0 0 10 1.0 1.0 C Y downregulated 7 - - g5238.t1,Cre05.g244800.t1.1,NUOAF3 PF05368,PF08547 PTHR24311:SF18,PTHR24311 KOG1203 - - - AT4G18810.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre10.g422700 SMM35 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g10457.t1,Cre10.g422700.t1.1,SMM35 PF08241 PTHR10108,PTHR10108:SF386 KOG4300 - - GO:0008152,GO:0008168 - - - Cre12.g520550 TRN1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Importin beta Importin beta-2 homolog. Similar to transportin, a member of the importin beta superfamily. Previously annotated as TRN1 g12826.t1,Cre12.g520550.t1.1,TRN1 PF03810,PF02985 PTHR10527:SF3,PTHR10527 KOG2023 - - GO:0006886,GO:0008565,GO:0005515 AT2G16950.2 ATTRN1,TRN1 transportin 1 Cre08.g377700 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 9 - - g8893.t1 PF02190 - - - - GO:0004176,GO:0006508 - - - Cre11.g483400 ELG10 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 9 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g11999.t1,ELG10 PF03016,PF07974 PTHR11062,PTHR11062:SF12 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre07.g344200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g8009.t1,Cre07.g344200.t1.1 - - - - - - - - - Cre01.g047300 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g1052.t1,Cre01.g047300.t1.1 - - - - - - - - - Cre14.g612250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 12 - - g14755.t1,Cre14.g612250.t1.1 - - - - - - - - - Cre14.g615800 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g14837.t1,Cre14.g615800.t1.1 - - - - - - AT5G49960.1 - - Cre07.g345150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g8032.t1,Cre07.g345150.t1.1 PF05301 PTHR12327 KOG4601 - - GO:0019799 - - - Cre16.g679950 RFC3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 DNA replication factor C complex subunit 3 Homologous to eukaryotic RFC3 (DNA replication factor C complex subunit 3); accessory protein of DNA polymerase g16511.t1,Cre16.g679950.t1.1,RFC3 PF00004,PF10424 PTHR11669 KOG2035 - K10756 GO:0005524,GO:0003677,GO:0005634,GO:0006260 AT5G27740.1 EMB161,EMB251,EMB2775,RFC3 ATPase family associated with various cellular activities (AAA) Cre08.g375700 SMM31 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g8851.t1,SMM31 - PTHR10108,PTHR10108:SF383 - - - - - - - Cre02.g109450 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g2245.t1 - - - - - - - - - Cre03.g172400 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g3555.t1 - - - - - - - - - Cre06.g301000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 13 - - g6964.t1,Cre06.g301000.t1.1 PF07714 PTHR23257:SF283,PTHR23257 KOG0983 - - GO:0004672,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre16.g684065 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g16417.t1,Cre16.g684065.t1.1 - - - - - - - - - Cre10.g419000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 1 - - g10373.t1,Cre10.g419000.t1.1 PF10248 PTHR13105:SF7,PTHR13105 KOG4049 - - - AT4G22740.1 - glycine-rich protein Cre01.g001600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 12 - - g35.t1,Cre01.g001600.t1.1 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 AT5G19330.1 ARIA ARM repeat protein interacting with ABF2 Cre03.g212305 FAP181 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Flagellar Associated Coiled-Coil Protein Flagellar Associated coiled-coil Protein, found in the flagellar proteome [PMID: 15998802] g4479.t1,Cre19.g756850.t1.1,FAP181 - - - - - - - - - Cre03.g146747 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g3002.t1 PF09118,PF07250 - - - - - AT3G53950.1 - glyoxal oxidase-related protein Cre03.g163400 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 15 - - g3350.t1 - - - - - - - - - Cre01.g033832 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 1 - - g764.t1 PF00271,PF00270 PTHR24031,PTHR24031:SF103 KOG0331 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT4G09730.1 RH39 RH39 Cre13.g605600 OAS1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g14606.t2,OAS1, g14606.t1,OAS1 PF10421 - - - - - - - - Cre07.g314700 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 10 - - g7281.t1,Cre07.g314700.t1.1 - - - - - - - - - Cre16.g653400 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g15801.t1 - - - - - - - - - Cre17.g722250 RRM14 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 14 - - g17472.t1,RRM14 PF01170 PTHR14911:SF1,PTHR14911 - - - - - - - Cre10.g429500 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g10609.t1 - - - - - - - - - Cre03.g191500 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 - - g3963.t1 PF01966 PTHR11373,PTHR11373:SF9 KOG2681 - - GO:0008081,GO:0046872 AT5G40270.1 - HD domain-containing metal-dependent phosphohydrolase family protein Cre08.g361600 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g8466.t1 PF10250 - - - - - - - - Cre16.g676000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g16597.t1,Cre16.g676000.t1.1 PF01753 - - - - GO:0008270 - - - Cre11.g468000 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g11740.t1,Cre11.g468000.t1.1 - - - - - - - - - Cre11.g481000 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11940.t1,Cre11.g481000.t1.1 PF00069 PTHR24343,PTHR24343:SF58 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT4G33950.1 ATOST1,OST1,P44,SNRK2-6,SNRK2.6,SRK2E Protein kinase superfamily protein Cre12.g547302 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 17 - - g13800.t1,Cre27.g774800.t1.1 - - - - - - - - - Cre11.g479383 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 13 - - g11901.t1,Cre11.g479400.t1.3 PF08016 - - - - - - - - Cre03.g179750 - 0 5 1.0 1.0 0 5 1.0 1.0 M n upregulated - - - g3720.t1,Cre03.g179750.t1.1 PF00892 - - - - GO:0016020 - - - Cre05.g232100 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g5137.t1,Cre05.g232100.t1.1 - - - - - - - - - Cre17.g719701 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 7 - - g17416.t1,Cre17.g719700.t1.3 - - - - - - - - - Cre17.g729400 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 18 - - g17629.t1,Cre17.g729400.t1.1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre07.g346450 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g8061.t1 - - - - - - - - - Cre14.g608550 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g14670.t1,Cre14.g608550.t1.1 - - - - - - - - - Cre03.g205850 MFT6,MAE6 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 16 MATE efflux family protein Putative MATE efflux family protein, related to Arabidopsis putative integral membrane protein.. Previously annotated as MFT6 g4194.t1,Cre03.g205850.t1.1,MAE6,MFT6 PF01554 PTHR11206:SF41,PTHR11206 - - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT1G73700.1 - MATE efflux family protein Cre03.g166150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g3410.t1 - - - - - - - - - Cre05.g246400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated - - - g5206.t1,Cre05.g246400.t1.1 PF00797 - - - - GO:0008152,GO:0016407 - - - Cre02.g081400 BCA1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 3 Branched chain amino acid aminotransferase Plastidic branched chain amino acid aminotransferase (BCAT) (EC:2.6.1.42); class IV aminotransferase. g1490.t1,Cre02.g081400.t1.1,BCA1 PF01063 PTHR11825:SF2,PTHR11825 KOG0975 - - GO:0004084,GO:0009081,GO:0003824,GO:0008152 AT1G50090.1 - D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein Cre12.g497800 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 12 - - g12629.t2, g12629.t1 - - - - - - - - - Cre09.g409850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g10155.t1,Cre09.g409850.t1.1 - - - - - - - - - Cre03.g203451 CYA5 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - - - - g4250.t1,Cre03.g203400.t1.3 - PTHR11017 - - - - - - - Cre12.g544650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g13669.t1 PF05724 - - - - GO:0005737,GO:0008119,GO:0008152 - - - Cre03.g203457 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g4397.t1,Cre19.g753300.t1.1 - - - - - - AT3G25600.1 - Calcium-binding EF-hand family protein Cre16.g661000 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 18 - - g15963.t1,Cre16.g661000.t1.1 PF01152 - - - - GO:0015671,GO:0019825 - - - Cre16.g657400 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g15886.t1 PF00226 PTHR24078:SF56,PTHR24078 - - - GO:0031072 AT2G41000.2 - Chaperone DnaJ-domain superfamily protein Cre03.g158500 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 18 - - g3245.t1 PF03109 PTHR10566,PTHR10566:SF10 KOG1235 - K08869 - AT1G79600.1 - Protein kinase superfamily protein Cre07.g320950 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g7420.t1,Cre07.g320950.t1.1 PF12165 PTHR23123 - - - - AT5G05610.1 AL1 alfin-like 1 Cre06.g278451 PDK2 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 12 - - g6475.t1,Cre06.g278450.t1.2 PF02518,PF10436 PTHR11947,PTHR11947:SF3 KOG0787 - - GO:0005524 AT3G06483.1 ATPDHK,PDK pyruvate dehydrogenase kinase Cre12.g516800 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g12747.t1 PF00069 PTHR26392:SF146,PTHR26392 - - - GO:0004672,GO:0005524,GO:0006468 AT5G03730.1 AtCTR1,CTR1,SIS1 Protein kinase superfamily protein Cre17.g737850 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g17849.t1 - - - - - - - - - Cre16.g689150 SQD3,GTR23 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - Sulfolipid synthase Sulfolipid synthase, adds sulfoquinovose to diacylglycerol to produce the plant sulfolipid, sulfoquinovosyldiacylglycerol; glycosyl transferase also previously annotated as GTR23 g16178.t1,Cre16.g689150.t1.1,GTR23 PF00534 PTHR12526,PTHR12526:SF168 - - - GO:0009058 AT5G01220.1 SQD2 sulfoquinovosyldiacylglycerol 2 Cre13.g562350 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 2 - - g13840.t1,Cre13.g562350.t1.1 PF01693 - - - - - - - - Cre09.g393395 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 16 - - g9753.t1,Cre02.g129350.t1.1 - - - - - - AT5G60760.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre01.g015451 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 9 - - g372.t1 - - - - - - - - - Cre08.g363300 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g8509.t1,Cre08.g363300.t1.1 PF01048 PTHR21234,PTHR21234:SF7 - - - GO:0003824,GO:0009116 - - - Cre05.g236907 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g5450.t1,Cre05.g236907.t1.1 PF00583 - - - - GO:0008080,GO:0008152 - - - Cre09.g414416 CYCD4 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 - - g10263.t1,Cre09.g414450.t1.2 PF00134,PF09770 PTHR10177,PTHR10177:SF76 KOG0656 - - - AT1G14750.1 SDS Cyclin family protein Cre17.g715700 PPP44,PP2C5 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y upregulated - Phosphoprotein phosphatase 2C Phosphoprotein phosphatase 2C. Previously annotated as PP2C5 g17325.t1,Cre17.g715700.t1.1,PPP44 PF00069,PF00481 PTHR13832,PTHR13832:SF189 KOG0192 - - GO:0004672,GO:0005524,GO:0006468,GO:0003824 AT2G40860.1 - protein kinase family protein / protein phosphatase 2C ( PP2C) family protein Cre09.g412150 PPR11 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g10204.t1 - - - - - - - - - Cre10.g422550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g10454.t1,Cre10.g422550.t1.1 - - - - - - - - - Cre02.g146850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g2523.t1,Cre02.g146850.t1.1 - - - - - - - - - Cre12.g540550 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g13764.t1 PF00561 PTHR10992:SF103,PTHR10992 KOG4178 - - - AT2G26740.1 ATSEH,SEH soluble epoxide hydrolase Cre01.g020887 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g485.t1,Cre01.g020887.t1.1 - - - - - - - - - Cre08.g382400 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g8996.t1 - - - - - - - - - Cre11.g467698 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 14 - - g11629.t1 - - - - - - - - - Cre17.g709300 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 8 - - g17181.t1 PF10009 - - - - - - - - Cre16.g686350 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 4 - - g16367.t1 PF00458 - - - - GO:0004812,GO:0005524,GO:0006418 - - - Cre11.g467690 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g11620.t1,Cre18.g744350.t1.1,Cre18.g744350.t1.2 - PTHR11260,PTHR11260:SF28 - - - - AT3G09270.1 ATGSTU8,GSTU8 glutathione S-transferase TAU 8 Cre11.g467691 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 9 - - g11621.t1,Cre18.g744313.t1.1,Cre18.g744313.t1.2 PF06990 PTHR14647:SF35,PTHR14647 - - - GO:0001733,GO:0005794,GO:0009058,GO:0016021 - - - Cre11.g467693 - 0 10 1.0 1.0 0 10 1.0 1.0 C n upregulated 2 - - g11623.t2, g11623.t1 PF07466 - - - - - AT1G54520.1 - - Cre11.g467696 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 6 - - g11627.t2, g11627.t1 - - - - - - - - - Cre11.g467697 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11628.t2, g11628.t3, g11628.t1, g11628.t4 - - - - - - - - - Cre01.g001450 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g32.t1,Cre01.g001450.t1.1 - - - - - - - - - Cre04.g214209 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4496.t1,Cre49.g789750.t1.1 - - - - - - - - - Cre08.g380800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g8961.t1, g8961.t2 - - - - - - - - - Cre13.g590800 HTA37 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 Histone H2A - g14488.t1,Cre13.g590800.t1.1,HTA37 PF00125 PTHR23430 KOG1756 - K11251 GO:0003677 AT1G51060.1 HTA10 histone H2A 10 Cre04.g217952 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 9 - - g4582.t2,Cre03.g209300.t1.1,Cre03.g209300.t1.2, g4582.t1,Cre03.g209300.t2.1 - PTHR13555,PTHR13555:SF2 - - - - - - - Cre04.g217953 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g4584.t1,Cre03.g209200.t1.1 PF00076 PTHR15241 - - - GO:0003676 AT1G22760.1 PAB3 poly(A) binding protein 3 Cre02.g147100 FAP265 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g2518.t1 PF05517 PTHR12932 KOG4070 - - - - - - Cre12.g485200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g12040.t1 PF00168 PTHR10774 - - - GO:0005515 AT4G34150.1 - Calcium-dependent lipid-binding (CaLB domain) family protein Cre12.g518400 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 8 - - g12783.t1,Cre12.g518400.t1.1 - - - - - - - - - Cre12.g553700 PDO2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g13459.t1,Cre12.g553700.t1.1,PDO2 PF01323 PTHR13887:SF1,PTHR13887 - - - GO:0015035,GO:0030288 AT5G38900.1 - Thioredoxin superfamily protein Cre03.g196500 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 - - g4070.t1 PF01847 - - - - - - - - Cre14.g620900 - 0 1 1.0 nan 0 1 1.0 nan M n - 5 - - g14963.t1,Cre14.g620900.t1.1 - - - - - - - - - Cre16.g688350 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 15 - - g16320.t1 - - - - - - - - - Cre06.g270700 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g6073.t1 PF00855 - KOG1904 - - - AT5G27650.1 - Tudor/PWWP/MBT superfamily protein Cre04.g224150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 14 - - g4890.t1,Cre04.g224150.t1.1 PF00370,PF02782 PTHR10196,PTHR10196:SF9 - 2.7.1.30 K00864 GO:0005975,GO:0016773,GO:0004370,GO:0006072 AT1G80460.1 GLI1,NHO1 Actin-like ATPase superfamily protein Cre10.g420950 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated - - - g10417.t1,Cre10.g420950.t1.1 - - - - - - - - - Cre02.g118500 COPB2 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Beta\' subunit of COP-I complex Expressed Protein. Beta\'-COP (Beta-prime). Subunit of COP-I complex involved in vesicle trafficking. g2459.t1,COPB2 PF00400,PF04053 PTHR19876:SF2,PTHR19876 KOG0276 - - GO:0005198,GO:0006886,GO:0016192,GO:0030117 AT1G52360.1 - Coatomer, beta\' subunit Cre06.g260776 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g5860.t1 - - - - - - - - - Cre16.g664100 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 10 - - g16034.t1 - - - - - - - - - Cre17.g723450 FAP13 - 0 12 1.0 1.0 0 12 1.0 1.0 M n - 13 - - g17499.t2, g17499.t1 PF00400,PF05729 PTHR22847:SF228,PTHR22847 KOG0271 - - - AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre13.g589800 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 2 - - g14468.t1,Cre13.g589800.t1.1 PF00999 PTHR10110 KOG1965 - - GO:0006812,GO:0015299,GO:0016021,GO:0055085 AT1G79610.1 ATNHX6,NHX6 Na+/H+ antiporter 6 Cre05.g237050 CGLD27 - 0 4 1.0 1.0 0 4 1.0 1.0 C Y upregulated 5 Predicted protein Conserved expressed protein of unknown function (DUF1230). This family consists of several hypothetical plant and photosynthetic bacterial proteins of around 160 residues in length. The function of this family is unknown although looking at the species di g5454.t1 PF06799 - - - - - AT5G67370.1 - Protein of unknown function (DUF1230) Cre13.g582850 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 14 - - g14310.t1 - - - - - - - - - Cre02.g086400 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g1602.t1,Cre02.g086400.t1.1 - - - - - - - - - Cre01.g035300 CPA2 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - N-carbamoylputrescine amidase Highly similar to plant N-carbamoylputrescine amidase (amidohydrolase), last step in the agmatinase pathway of polyamine (putrescine) biosynthesis g796.t1,Cre01.g035300.t1.1,CPA2 PF00795 PTHR23088 KOG0806 - - GO:0006807,GO:0016810 AT2G27450.1 ATNLP1,CPA,NLP1 nitrilase-like protein 1 Cre07.g322550 FAP240 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g7452.t1,Cre07.g322550.t1.1 - - KOG0910 - - - - - - Cre03.g149517 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g3041.t2, g3041.t1 - - - - - - - - - Cre07.g317864 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g7349.t1,Cre07.g317900.t1.3, g7349.t2,Cre07.g317900.t3.1, g7349.t3,Cre07.g317900.t2.1 - - - - - - - - - Cre06.g260800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g5861.t1,Cre06.g260800.t1.1 PF05856 PTHR22629 KOG1876 - K05755 GO:0005856,GO:0030041 AT4G14147.1 ARPC4 protein binding Cre02.g084800 SPO11A - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 DNA topoisomerase VI subunit A (type IIB) DNA topoisomerase VI subunit A (type IIB), involved in meiosis; homolog of eukaryotic SPO11; Chlamydomonas has at least two homologues. g1565.t1,Cre02.g084800.t1.1,SPO11A PF04406 PTHR10848 KOG2795 - K10878 GO:0003677,GO:0003824,GO:0005524,GO:0005694,GO:0006259 AT5G02820.1 BIN5,RHL2 Spo11/DNA topoisomerase VI, subunit A protein Cre13.g575000 CCS1 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 3 Protein required for cytochrome c synthesis/biogenesis Protein required for cytochrome c synthesis/biogenesis with homology to ResB, Ycf44 [PMID: 12427747; PMID: 9395519]; corresponds to ac206 mutant g14132.t1 PF05140 - - - K07399 - AT1G49380.1 - cytochrome c biogenesis protein family Cre09.g393136 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9746.t1,Cre02.g128950.t1.1,Cre02.g128950.t1.2 PF07651 PTHR22951,PTHR22951:SF1 KOG0251 - - GO:0005543 AT4G25940.1 - ENTH/ANTH/VHS superfamily protein Cre03.g201750 - 0 1 1.0 nan 0 1 1.0 nan C n - 2 - - g4287.t1,Cre03.g201750.t1.1 - - - - - - - - - Cre11.g468250 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g11748.t1 - - - - - - - - - Cre12.g486850 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 11 - - g12254.t1 - - - - - - - - - Cre03.g209505 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g4453.t1,Cre19.g755700.t1.1,Cre19.g755700.t1.2 PF00069 PTHR24343,PTHR24343:SF58 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT1G78290.2 SNRK2-8,SNRK2.8,SRK2C Protein kinase superfamily protein Cre11.g475650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g11816.t1 - - - - - - - - - Cre07.g322884 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g7459.t2, g7459.t1,Cre07.g322884.t1.1 PF00201 PTHR11926 KOG1192 2.4.1.17 K00699 GO:0008152,GO:0016758 AT4G15280.1 UGT71B5 UDP-glucosyl transferase 71B5 Cre06.g298880 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 - - g6914.t1,Cre06.g298900.t1.2 - - - - - - - - - Cre09.g391801 VSP4 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 18 Hydroxyproline-rich glycoprotein, cell wall protein Hydroxyproline rich glycoprotein VSP4; (SP)n-repeats, extracellular matrix protein (cell wall protein); resembles VSP6 [PMID: 7689882, Genbank entry AY036106] g9706.t1,Cre02.g127250.t1.1,Cre02.g127250.t1.2,VSP4 PF05572 - - - - - - - - Cre06.g272701 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g6118.t1 - - - - - - - - - Cre15.g640600 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g15388.t1,Cre15.g640600.t1.1 PF00775 - - - - GO:0003824,GO:0006725,GO:0008199,GO:0055114 - - - Cre12.g487450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g12239.t1 PF08910 PTHR14472 - - - - - - - Cre04.g212200 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g4735.t2, g4735.t1 - - - - - - - - - Cre12.g545650 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g13644.t1,Cre12.g545650.t1.1 - - - - - - - - - Cre03.g192501 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g3984.t1 - - - - - - - - - Cre16.g649950 HFO40 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 Histone H4 Replication-linked Histone H4 g15726.t1,Cre16.g649950.t1.1,HFO40 PF00125 PTHR10484 KOG3467 - K11254 GO:0000786,GO:0003677,GO:0005634,GO:0006334 AT1G07660.1 - Histone superfamily protein Cre17.g721350 GST13 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g17453.t1,Cre17.g721350.t1.1,GST13 PF02798 PTHR11571:SF94,PTHR11571 KOG1695 - - GO:0005515 - - - Cre02.g119526 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g2481.t1 - - - - - - - - - Cre10.g443350 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10902.t1,Cre10.g443350.t1.1 PF10475,PF10474 PTHR13258 - - - - AT2G27900.1 - - Cre02.g089400 HRP2 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g1668.t1,HRP2 - - - - - - - - - Cre08.g364300 FAP29 - 0 16 1.0 1.0 0 16 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in flagellar proteome [PMID: 15998802]. Contains type A von Willebrand factor domain g8530.t1,Cre08.g364300.t1.1 PF00092 PTHR10338,PTHR10338:SF8 - - - GO:0005515 AT1G19110.1 - inter-alpha-trypsin inhibitor heavy chain-related Cre16.g668900 MTA3 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 Hypothetical protein Unknown protein; a pseudo-gene copy resides in the A region of the mt+ locus [PMID: 11805055]. Independently sequenced, see AF309495 g16257.t1,MTA3 - PTHR11266 - - - GO:0016021 - - - Cre02.g105250 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 9 - - g2157.t1 - - - - - - - - - Cre17.g744947 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g18015.t1 PF00588 PTHR12029,PTHR12029:SF8 - - - GO:0003723,GO:0006396,GO:0008173 AT4G38020.1 - tRNA/rRNA methyltransferase (SpoU) family protein Cre02.g077150 CPLD14 - 0 3 1.0 1.0 0 3 1.0 1.0 C Y - 6 Predicted protein Conserved protein g1390.t1,CPLD14 PF05684 - - - - - AT5G52540.1 - Protein of unknown function (DUF819) Cre04.g215000 CBK1,BKT1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n upregulated 4 Beta-carotene ketolase Beta-carotene C-4 oxygenase (beta-carotene ketolase), putative chloroplast precursor (CBK) (crtW) [PMID: 15849308]. Previously annotated as CBK1 and BKT1. In the Fatty acid desaturase (FAD), type 1 family. Also known as FAD8 g4671.t1,Cre04.g215000.t1.1,BKT1,CBK1 PF00487 PTHR19353,PTHR19353:SF7 KOG2987 - - GO:0006629,GO:0016491,GO:0055114 - - - Cre12.g513600 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 7 - - g12679.t1,Cre12.g513600.t1.1 PF04969,PF05002,PF00515 PTHR22904,PTHR22904:SF69 KOG1309 - K12795 GO:0005515 AT4G11260.1 ATSGT1B,EDM1,ETA3,RPR1,SGT1B phosphatase-related Cre01.g052000 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1153.t1,Cre01.g052000.t1.1 PF07683,PF02492 PTHR13748 - - - - AT1G26520.1 - Cobalamin biosynthesis CobW-like protein Cre06.g295100 EEP4 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 10 - - g6831.t1,EEP4 PF03372 - - - - - - - - Cre12.g498850 CEP12 - 0 1 1.0 nan 0 1 1.0 nan SP n - 17 - - g12608.t1,Cre12.g498850.t1.1,CEP12 PF00112 PTHR12411:SF14,PTHR12411 KOG1543 3.4.18.1 K08568 GO:0006508,GO:0008234 AT1G02305.1 - Cysteine proteinases superfamily protein Cre17.g720400 HMA1 - 0 1 1.0 nan 0 1 1.0 nan C Y downregulated 6 Heavy metal transporting ATPase Heavy metal transporting ATPase (HMA), P-type ATPase superfamily, membrane protein. Related to AtHMA1 (a chloroplastic Cu transporter, PMID: 16282320), and to bacterial heavy metal transporting ATPase (HMA, p-type ATPase superfamily). Like AtHMA1, the Chl g17436.t1 PF00702,PF00122 PTHR24093,PTHR24093:SF149 - - - GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT4G37270.1 ATHMA1,HMA1 heavy metal atpase 1 Cre12.g532200 AOA2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g13094.t1,AOA2 - PTHR10794,PTHR10794:SF9 - - - - AT5G49950.1 - alpha/beta-Hydrolases superfamily protein Cre02.g082400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g1510.t1 PF00443 - - - - GO:0004221,GO:0006511 - - - Cre09.g393099 - 0 3 1.0 1.0 0 3 1.0 1.0 - n - 13 - - g9745.t1, g9745.t2 - - - - - - - - - Cre06.g265652 - 0 17 1.0 1.0 0 17 1.0 1.0 SP n - - - - g5965.t1,Cre06.g265700.t1.2 - - KOG0487 - - - - - - Cre01.g007651 PUS10 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 9 - - g197.t1,PUS10 PF01142 PTHR13326 - - - GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT3G04820.1 - Pseudouridine synthase family protein Cre14.g610900 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g14727.t1 - - - - - - - - - Cre06.g268976 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g6035.t1 - - - - - - - - - Cre12.g538200 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 5 - - g13233.t1,Cre12.g538200.t1.1 PF05773,PF03959,PF01926,PF08438 PTHR23305:SF1,PTHR23305 KOG2551 - K06942 GO:0005515,GO:0005525,GO:0005622 AT1G09280.1 - - Cre17.g733800 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g17739.t1 - - - - - - - - - Cre13.g579800 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 14 - - g14245.t1,Cre13.g579800.t1.1 PF00696 PTHR24802:SF3,PTHR24802 - - - GO:0008652 AT1G26640.1 - Amino acid kinase family protein Cre17.g729000 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 11 - - g17620.t1 - - KOG0963 - - - AT5G41140.2 - Myosin heavy chain-related protein Cre14.g611051 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g14730.t1 - - - - - - - - - Cre02.g111450 TEF4 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 6 Rhodanese-like protein Rhodanese-like protein, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018] g2293.t1,Cre02.g111450.t1.1,TEF4 PF00581 - KOG1530 - - - AT4G27700.1 - Rhodanese/Cell cycle control phosphatase superfamily protein Cre16.g664950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g16051.t1 - - - - - - - - - Cre02.g098200 PRT1 - 0 6 1.0 1.0 0 6 1.0 1.0 O Y - 16 - - g1997.t1 PF00569 PTHR15898,PTHR15898:SF1 - - - GO:0008270 AT3G24800.1 PRT1 proteolysis 1 Cre10.g465822 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g11417.t1,Cre10.g465822.t1.1 PF07282 - - - - - - - - Cre09.g395000 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 10 - - g9391.t1,Cre09.g395000.t1.1 - - - - - - - - - Cre07.g327350 CDPK8 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 - - g7615.t1,Cre07.g327350.t1.1,CDPK8 PF08332 PTHR24345,PTHR24345:SF64 - 2.7.11.17 K04515 GO:0004683,GO:0005516,GO:0006468 - - - Cre08.g359250 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g8415.t1,Cre08.g359250.t1.1 - - - - - - - - - Cre13.g565600 CPZ - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 17 - - g13920.t1,CPZ PF00246 PTHR12756 - - - GO:0004181,GO:0006508,GO:0008270 - - - Cre04.g229850 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5035.t1,Cre04.g229850.t1.1 - - - - - - - - - Cre11.g469500 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 15 - - g11785.t1, g11785.t2 PF00989 PTHR10919:SF179,PTHR10919 - - - GO:0006355 - - - Cre01.g041667 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g933.t2, g933.t1 - - - - - - - - - Cre12.g529350 SMM42 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g13033.t1,SMM42 PF08241 PTHR10108,PTHR10108:SF417 - - - GO:0008152,GO:0008168 - - - Cre03.g186750 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 9 - - g3869.t1,Cre03.g186750.t1.1 - - - - - - - - - Cre07.g315450 CSG2 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 Predicted protein of CSG family Functionn unknown, no known homologue, except in Volvox; belongs to a small family of Chlamydomonas specific proteins, all located on chomosome VII (scaffolds 6 and 16) g7299.t1,CSG2 - - - - - - - - - Cre04.g215800 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 16 - - g4655.t1 PF08457 - - - - - - - - Cre07.g329300 MSC1 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - - Mechanosensitive ion channel Mechanosensitive ion channel; sequence similarity with bacterial (E. coli) mechanosensitive ion channel MscS g7660.t1,Cre07.g329300.t1.1,MSC1 PF00924 - - - - GO:0016020,GO:0055085 AT1G58200.1 MSL3 MSCS-like 3 Cre01.g041000 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g918.t1 - - KOG3450 - - - AT3G06610.1 - DNA-binding enhancer protein-related Cre17.g724400 FAP257 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g17520.t1,Cre17.g724400.t1.1 - - - - - - - - - Cre17.g728976 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g17619.t1 - - - - - - - - - Cre12.g503350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g12503.t1,Cre12.g503350.t1.1 - - - - - - - - - Cre17.g728750 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g17613.t1,Cre17.g728750.t1.1 PF05548,PF11617 - - - - - - - - Cre01.g003751 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 4 - - g94.t1,Cre01.g003750.t1.3 PF00520,PF00027 PTHR10217:SF393,PTHR10217 KOG0500 - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT5G37500.1 GORK gated outwardly-rectifying K+ channel Cre02.g095117 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g1890.t2,Cre11.g473100.t1.1, g1890.t1,Cre11.g473100.t2.1 PF00069 PTHR26263,PTHR26263:SF9 - - - GO:0004672,GO:0005524,GO:0006468 AT4G13020.3 MHK Protein kinase superfamily protein Cre02.g095114 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 8 - - g1887.t1,Cre11.g472950.t1.1 - - - - - - - - - Cre02.g095115 - 0 7 1.0 1.0 0 7 1.0 1.0 C n downregulated 12 - - g1888.t1,Cre11.g473000.t1.1,Cre11.g473000.t1.2 PF10274 - - - - - - - - Cre02.g095112 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g1885.t1 - - - - - - - - - Cre02.g095113 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g1886.t1,Cre11.g472900.t1.1 PF01302 PTHR15140,PTHR15140:SF6 - - - - AT1G71440.1 PFI,TFC E tubulin folding cofactor E / Pfifferling (PFI) Cre17.g704050 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g17069.t1 - - - - - - - - - Cre02.g095119 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g1892.t1,Cre11.g473150.t1.1 PF01753 - - - - GO:0008270 - - - Cre09.g401071 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g9981.t1,Cre02.g138650.t1.1,Cre02.g138650.t1.2 - PTHR12393 - - - - - - - Cre04.g213750 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 14 - - g4703.t2, g4703.t1 - PTHR10825:SF30,PTHR10825 - - - - - - - Cre04.g213751 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g4704.t1 - - - - - - - - - Cre03.g169750 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g3495.t1,Cre03.g169750.t1.1 - - - - - - - - - Cre03.g165850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g3403.t1,Cre03.g165850.t1.1 - - - - - - - - - Cre09.g394065 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g9771.t2,Cre02.g130150.t2.1, g9771.t1,Cre02.g130150.t1.1 - - - - - - AT1G69230.1 SP1L2 SPIRAL1-like2 Cre03.g187400 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g3882.t1,Cre03.g187400.t1.1 - - - - - - - - - Cre12.g556700 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g13398.t1,Cre12.g556700.t1.1 - - - - - - - - - Cre13.g586200 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g14385.t1,Cre13.g586200.t1.1 - PTHR23083,PTHR23083:SF74 - - - - AT4G28600.1 NPGR2 no pollen germination related 2 Cre14.g629880 - 0 1 1.0 nan 0 1 1.0 nan SP n - 9 - - g15169.t1 PF00646 - - - - GO:0005515 - - - Cre15.g637150 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g15366.t1 - - - - - - - - - Cre09.g391652 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 1 - - g9701.t1,Cre02.g127100.t1.1 PF03715 PTHR12687,PTHR12687:SF5 KOG2256 - - - AT2G18220.1 - Noc2p family Cre09.g391650 HCP4 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 11 Hybrid-cluster protein Prismane/CO dehydrogenase family g9459.t1,Cre09.g391650.t1.1,HCP4 PF03063 - - - - GO:0005737,GO:0016491,GO:0055114 - - - Cre04.g226926 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g4967.t1 - - - - - - - - - Cre08.g373916 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 10 - - g8812.t1 PF03159 PTHR12341,PTHR12341:SF7 - - - GO:0003676,GO:0004527,GO:0005622 AT5G42540.2 AtXRN2,XRN2 exoribonuclease 2 Cre08.g378200 PPO1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 - - g8903.t1,Cre08.g378200.t1.1,PPO1 PF10590,PF01243,PF03853 PTHR13232:SF7,PTHR13232 KOG2586 - - GO:0016638,GO:0055114,GO:0010181 AT5G49970.1 ATPPOX,PDX3,PPOX pyridoxin (pyrodoxamine) 5\'-phosphate oxidase Cre14.g634193 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g15291.t1,Cre14.g634200.t1.3 - - - - - - - - - Cre03.g181800 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 - - g3768.t1,Cre03.g181800.t1.1 - - - - - - - - - Cre11.g475350 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 2 - - g11807.t1 PF05093 PTHR13273 KOG4020 - - - AT5G18400.2 - Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis Cre01.g040200 WNK2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - WNK protein kinase WNK (With No Lysine) protein kinase homolog g897.t1,Cre01.g040200.t1.1,WNK2 PF00069 PTHR13902 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT5G41990.1 ATWNK8,WNK8 with no lysine (K) kinase 8 Cre12.g513450 TUH1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - Eta tubulin Similar to eta-tubulin from Paramecium [gi:9501681]. Probably connected to triplet microtubules of basal bodies underlying ciliary axonemes; associated with flagella. Previously annotated as TUH. Possibly the locus for COR1 (colchicine resistance) gene g12676.t1,Cre12.g513450.t1.1,TUH1 PF00091 PTHR11588,PTHR11588:SF18 KOG1374 - - GO:0043234,GO:0051258,GO:0005525,GO:0005874,GO:0007017 AT3G61650.1 TUBG1 gamma-tubulin Cre10.g466100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11423.t1,Cre10.g466100.t1.1 - - - - - - - - - Cre05.g237400 DAE1 - 0 1 1.0 nan 0 1 1.0 nan C n - 2 Diaminopimelate epimerase Putative diaminopimelate (DAP) epimerase (EC:5.1.1.7); lysine biosynthesis pathway (dapF); organelle (mitochondria) targeting predicted by Target-P; plastid location expected based on homology g5461.t1,Cre05.g237400.t1.1,DAE1 PF01678 - - 5.1.1.7 K01778 GO:0008837,GO:0009089 AT3G53580.1 - diaminopimelate epimerase family protein Cre17.g713674 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 4 - - g17281.t1,Cre17.g713674.t1.1 - - - - - - - - - Cre09.g393876 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 4 - - g9766.t1,Cre02.g129900.t1.1 PF00588 PTHR12029,PTHR12029:SF27 - - - GO:0003723,GO:0006396,GO:0008173 - - - Cre02.g078350 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 16 - - g1419.t1,Cre02.g078350.t1.1 - - - - - - - - - Cre08.g365825 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g8572.t2,Cre08.g365801.t2.1, g8572.t1,Cre08.g365801.t1.2 PF03055 PTHR10543,PTHR10543:SF1 KOG1285 - - - AT3G63520.1 ATCCD1,ATNCED1,CCD1,NCED1 carotenoid cleavage dioxygenase 1 Cre08.g374050 POLD2 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 DNA polymerase delta, small subunit Homologous to eukaryotic DNA polymerase delta, small subunit. Involved in DNA replication; a class B polymerase. See Burgers et al. (2001) (PMID: 11579108). Previously annotated as POLD2 g8814.t1,Cre08.g374050.t1.1,POLD2 PF04042 PTHR10416 KOG2732 - K02328 GO:0003677,GO:0003887,GO:0006260 AT2G42120.2 POLD2 DNA polymerase delta small subunit Cre02.g119950 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n downregulated 8 - - g2491.t1,Cre02.g119950.t1.1 - - - - - - - - - Cre17.g716000 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g17332.t1,Cre17.g716000.t1.1 - - - - - - - - - Cre12.g537000 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 12 - - g13205.t1,Cre12.g537000.t1.1 PF07883 - - - - - AT4G02980.1 ABP,ABP1 endoplasmic reticulum auxin binding protein 1 Cre07.g346300 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g8056.t1,Cre07.g346300.t1.1 PF01753 PTHR13244 - - - GO:0008270 - - - Cre09.g402812 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g10028.t1,Cre02.g140750.t1.1,Cre02.g140750.t1.2 - PTHR10783 - - - - - - - Cre10.g448450 UAPA5,XUV2 - 0 1 1.0 nan 0 1 1.0 nan O n - - Xanthine/uracil/vitamin C permease-like Xanthine/uracil/vitamin C permease-like. Related to plants; also related to bacterial inner membrane proteins g11026.t1,XUV2 PF00860 PTHR11119,PTHR11119:SF9 - - - GO:0005215,GO:0006810,GO:0016020,GO:0055085 AT3G10960.1 ATAZG1,AZG1 AZA-guanine resistant1 Cre18.g748897 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g18094.t1 - PTHR12270,PTHR12270:SF7 - - - - - - - Cre03.g146547 - 0 1 1.0 nan 0 1 1.0 nan SP n - 4 - - g2992.t1,Cre01.g061850.t1.1,Cre01.g061850.t1.2 - - - - - - - - - Cre03.g203121 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g4394.t1,Cre19.g753150.t1.1,Cre19.g753150.t1.2 - - - - - - - - - Cre09.g404550 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 14 - - g9166.t1,Cre09.g404550.t1.1 PF02816 PTHR14187,PTHR14187:SF3 - - - GO:0004674,GO:0005524,GO:0006468 - - - Cre06.g311100 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 12 - - g7198.t1,Cre06.g311100.t1.1 - - - - - - - - - Cre06.g286000 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g6647.t1,Cre06.g286000.t1.1 - - - - - - - - - Cre10.g465450 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g11405.t1,Cre10.g465450.t1.1 PF00685 - - - - GO:0008146 - - - Cre01.g055600 KIL15 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g1244.t1,KIL15 PF00225 PTHR24115 KOG0240 - - GO:0003777,GO:0005524,GO:0007018 AT3G44050.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre01.g004600 RWP12 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 9 RWP-RK transcription factor Putative RWP-RK domain transcription factor [PMID: 15785851]; model is very tentative g112.t1,RWP12 PF02042 - KOG3866 - - - AT5G53040.1 - RWP-RK domain-containing protein Cre08.g371400 CPL16 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g8699.t1 PF00097 PTHR22766,PTHR22766:SF20 - - - - AT3G02290.1 - RING/U-box superfamily protein Cre11.g478850 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g11887.t1,Cre11.g478850.t1.1 PF04755 - - - - GO:0005198,GO:0009507 AT2G35490.1 - Plastid-lipid associated protein PAP / fibrillin family protein Cre05.g242300 EIF3D - 0 1 1.0 nan 0 1 1.0 nan O n - 5 Eukaryotic translation initiation factor 3, subunit D Eukaryotic translation initiation factor 3, subunit D. Also known as eIF3 subunit 7, eIF3-zeta, eIF3-p66, and eIF3d g5306.t1,Cre05.g242300.t1.1,EIF3D PF05091 PTHR12399 KOG2479 - K03251 GO:0003743,GO:0006413 AT4G20980.1 - Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) Cre12.g536750 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 17 - - g13199.t1,Cre12.g536750.t1.1 - - - - - - - - - Cre03.g212529 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g4481.t1 - - - - - - AT4G27660.1 - - Cre06.g257750 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g5794.t1 - - - - - - - - - Cre17.g712200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g17247.t2, g17247.t1 PF02809,PF00443 PTHR24619:SF185,PTHR24619 - 3.1.2.15 K11850 GO:0004221,GO:0006511 AT5G57990.1 UBP23 ubiquitin-specific protease 23 Cre17.g718950 RCA2 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 18 Rubisco activase-like protein Related to RuBisCO activase (RCA); catalyzes the activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39); via the ATP-dependent carboxylation of the epsilon-amino group of lysine. g17398.t1,Cre17.g718950.t1.1 PF00004 PTHR11603,PTHR11603:SF153 KOG0651 - - GO:0005524 AT1G73110.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre17.g705150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g17091.t1 PF03121 - - - - GO:0003896,GO:0006260 AT5G52800.3 - DNA primases Cre11.g467900 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 7 - - g11738.t1,Cre11.g467900.t1.1 - - - - - - AT1G01180.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre17.g704200 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g17072.t1 - - - - - - - - - Cre02.g099750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g2030.t1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre02.g105800 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 17 - - g2169.t1 PF00023 - KOG4172 - - GO:0005515 AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre13.g581801 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14287.t1,Cre13.g581800.t1.3 PF05773 - - - - GO:0005515 AT3G60300.2 - RWD domain-containing protein Cre10.g419700 CGL6 - 0 2 1.0 1.0 0 2 1.0 1.0 SP Y - 10 Predicted protein Protein of unknown function, some similarity to protein of unknown function in Arabidopsis NP_196757.2 GI:22326741 g10388.t1 PF05653 PTHR12570 - - - - AT5G11960.1 - Protein of unknown function (DUF803) Cre04.g213500 TMG8 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g4707.t1,TMG8 PF02390 PTHR23417 KOG3115 - - GO:0006400,GO:0008176 AT5G17660.1 - tRNA (guanine-N-7) methyltransferase Cre13.g564766 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 17 - - g13894.t1,Cre13.g564766.t1.1 PF00233 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre11.g477500 - 0 6 1.0 1.0 0 6 1.0 1.0 C n upregulated 5 - - g11856.t1,Cre11.g477500.t1.1 - PTHR23241 KOG2886 - - - AT3G62580.1 - Late embryogenesis abundant protein (LEA) family protein Cre15.g643499 - 0 1 1.0 nan 0 1 1.0 nan - n - 10 - - g15517.t1,Cre15.g643499.t1.1 - - - - - - - - - Cre11.g482250 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 - - g11972.t1 - - - - - - - - - Cre02.g095101 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g1874.t1,Cre11.g472450.t1.1,Cre11.g472450.t1.2 PF00400,PF00076 PTHR24012:SF186,PTHR24012 KOG4205 - - GO:0003676 AT5G51300.1 - splicing factor-related Cre11.g476450 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g11835.t1 PF01472,PF01189 PTHR22807:SF7,PTHR22807 - - - GO:0003723 AT1G06560.1 - NOL1/NOP2/sun family protein Cre17.g715850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g17329.t1,Cre17.g715850.t1.1 - - - - - - - - - Cre07.g317750 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 9 - - g7346.t1 - - - - - - - - - Cre14.g630600 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g15186.t1 PF01753 - - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre15.g635400 ZYS3,ZYS3-1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 Zygote-specific protein Zygote-specific protein 3; partial sequence contains ankyrin repeats. Previously annotated as ZYS3-1 g15324.t1,Cre15.g635400.t1.1,ZYS3,ZYS3-1 PF00023,PF00397 - - - - GO:0005515 AT2G28840.2 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre17.g714450 KUP3 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17299.t1,Cre17.g714450.t1.1,KUP3 PF02705 - - - - GO:0015079,GO:0016020,GO:0071805 AT4G13420.1 ATHAK5,HAK5 high affinity K+ transporter 5 Cre01.g015200 PDE4 - 0 16 1.0 1.0 0 16 1.0 1.0 O n - 16 3\',5\'-cyclic-nucleotide phosphodiesterase Metal-dependent phosphohydrolase; may be involved in cAMP signal transduction g367.t1,PDE4 PF00233,PF03924 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre06.g270276 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g6064.t1 - - - - - - - - - Cre06.g250700 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g5615.t2, g5615.t3, g5615.t1 - - - - - - - - - Cre03.g173650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3581.t1,Cre03.g173650.t1.1 - - - - - - - - - Cre13.g587750 COG6 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 Component of oligomeric golgi complex Expressed protein. Similar to COG6/COD2, component of oligomeric golgi complex 6, involved in vesicle tethering and other Golgi functions g14418.t1,Cre13.g587750.t1.1,COG6 PF06419 PTHR21506 KOG3758 - - - AT1G31780.1 - - Cre07.g326600 PDI6 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 7 - - g7594.t1,Cre07.g326600.t1.1,PDI6 PF00085 PTHR18929 KOG0907 5.3.4.1 K01829 GO:0045454 AT1G04980.1 ATPDI10,ATPDIL2-2,PDI10,PDIL2-2 PDI-like 2-2 Cre03.g162250 CGL35,RAD1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 DNA repair protein Damaged DNA binding / exodeoxyribonuclease III. Green-lineage conserved expressed protein - similar to hypothetical protein in Arabidopsis. Previously annotated as CGL35 g3325.t1,Cre03.g162250.t1.1,RAD1 PF02144 PTHR10870 - 3.1.11.2 K02830 GO:0003684,GO:0005634,GO:0006281,GO:0008853 AT4G17760.1 - damaged DNA binding;exodeoxyribonuclease IIIs Cre13.g604450 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 11 - - g14582.t1 - - KOG0487 - - - - - - Cre16.g652250 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 11 - - g15776.t1,Cre16.g652250.t1.1 - - - - - - - - - Cre02.g092700 FAP45 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 14 Flagellar Associated Protein Flagella Associated Protein, found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG28 [PMID: 15964273]. Transcript highly upregulated during flagellar regeneration [PMID: 15738400]. Weakly similar to nasopharyngeal epithelium-spec g1738.t1,Cre02.g092700.t1.1 - PTHR15504 - - - - - - - Cre06.g262977 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 8 - - g5907.t1,Cre06.g262977.t1.1 - PTHR14187:SF32,PTHR14187 - - - - - - - Cre06.g284700 AAT2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 Alanine aminotransferase (EC 2.6.1.2); Target-P prediction ambiguous g6619.t1,Cre06.g284700.t1.1,AAT2 PF00155 PTHR11751:SF29,PTHR11751 KOG0258 2.6.1.2 K00814 GO:0009058,GO:0016769,GO:0030170 AT1G72330.1 ALAAT2 alanine aminotransferase 2 Cre03.g192150 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - - - g3977.t1,Cre03.g192150.t1.1 - - - - - - - - - Cre05.g244300 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g5248.t1 - - - - - - - - - Cre17.g701350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g17004.t1, g17004.t2, g17004.t3 PF01351 PTHR10954 KOG2299 3.1.26.4 K10743 GO:0003723,GO:0004523 AT2G25100.1 - Polynucleotidyl transferase, ribonuclease H-like superfamily protein Cre04.g220076 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g4800.t1 - - - - - - - - - Cre12.g549852 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g13806.t1,Cre27.g775000.t1.1,Cre27.g775000.t1.2 PF00106 PTHR24322:SF18,PTHR24322 KOG1611 - - GO:0008152,GO:0016491 AT4G20760.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre05.g241150 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 11 - - g5560.t1 - PTHR14222 - - K11491 - AT4G15890.1 - binding Cre05.g247650 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 12 - - g5179.t1 - - KOG3454 - - - - - - Cre02.g142066 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 15 - - g2751.t1,Cre15.g646400.t1.1 - - - - - - - - - Cre07.g316400 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g7315.t1 - PTHR12270,PTHR12270:SF7 - - K09668 - - - - Cre11.g480250 - 0 4 1.0 1.0 0 4 1.0 1.0 C n downregulated 14 - - g11923.t2, g11923.t1 PF01764 - - - - GO:0004806,GO:0006629 AT5G55110.1 - Stigma-specific Stig1 family protein Cre06.g270850 SRH12 - 0 10 1.0 1.0 0 10 1.0 1.0 O n upregulated - - - g6077.t1,Cre06.g270850.t1.1,SRH12 PF00176,PF00271 PTHR10799,PTHR10799:SF49 KOG0389 - K10841 GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT2G18760.1 CHR8 chromatin remodeling 8 Cre14.g631550 - 0 19 1.0 1.0 0 19 1.0 1.0 C n - 14 - - g15220.t1 - PTHR23130,PTHR23130:SF18 - - - - AT4G17280.1 - Auxin-responsive family protein Cre02.g106050 - 0 4 1.0 1.0 0 4 1.0 1.0 M n upregulated - - - g2174.t1,Cre02.g106050.t1.1 PF00561 PTHR12846:SF3,PTHR12846 - - - - - - - Cre11.g468900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g11772.t1,Cre11.g468900.t1.1 - - - - - - - - - Cre08.g364751 BLZ16 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 6 - - g8540.t1,BLZ16 - - KOG3592 - - - - - - Cre08.g378601 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g8912.t1 - - - - - - - - - Cre03.g203950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g4237.t1 PF00561 PTHR10992,PTHR10992:SF208 - - - - - - - Cre11.g475100 NAT26 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g11803.t1,Cre11.g475100.t1.1,NAT26 PF00583 PTHR10545:SF13,PTHR10545 - - - GO:0008080,GO:0008152 - - - Cre06.g301900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g6987.t2, g6987.t1 - - - - - - - - - Cre12.g534050 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 14 - - g13135.t1,Cre12.g534050.t1.1 PF01735 PTHR10728 - - - GO:0004620,GO:0009395 - - - Cre06.g299950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g6938.t1 - - - - - - - - - Cre03.g161500 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g3310.t1 - PTHR23041,PTHR23041:SF14 - 6.3.2.19 K10639 - AT1G53490.1 - RING/U-box superfamily protein Cre07.g334350 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 - - g7786.t1,Cre07.g334350.t1.1 PF01636 - - - - - - - - Cre02.g083300 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g1532.t1 - - - - - - - - - Cre16.g680750 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g16492.t1 PF00651 - - - - GO:0005515 - - - Cre02.g080650 HSP90B - 0 1 1.0 nan 0 1 1.0 nan SP Y - 7 Endoplasmic reticulum associated heat shock protein 90B HSP90B is one of 3 HSP90 genes in Chlamydomonas; HSP90B is localized to the ER; PMID: 16143837 and 15995001. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145]. g1474.t1,Cre02.g080650.t1.1 PF02518,PF00183 PTHR11528:SF36,PTHR11528 KOG0020 - K04079 GO:0005524,GO:0006457,GO:0006950,GO:0051082 AT2G04030.1 AtHsp90.5,CR88,EMB1956,Hsp88.1,HSP90.5 Chaperone protein htpG family protein Cre17.g712050 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g17243.t1 - - - - - - - - - Cre08.g363400 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 3 - - g8513.t1 - - - - - - - - - Cre14.g609030 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g14683.t1 PF00795 PTHR23088 KOG0807 - - GO:0006807,GO:0016810 AT4G08790.1 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein Cre16.g668650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 2 - - g16262.t1 - - - - - - AT2G43465.1 - RNA-binding ASCH domain protein Cre03.g179650 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g3718.t1 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 AT2G04740.1 - ankyrin repeat family protein Cre02.g087150 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 16 - - g1617.t1,Cre02.g087150.t1.1 - - - - - - - - - Cre06.g289050 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 15 - - g6709.t1 - - - - - - - - - Cre09.g391356 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 15 - - g9693.t2,Cre02.g126800.t1.1, g9693.t1,Cre02.g126800.t2.1 PF07714 PTHR23257 - - - GO:0004672,GO:0006468 AT4G35780.1 - ACT-like protein tyrosine kinase family protein Cre03.g208161 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g4440.t1,Cre19.g755250.t1.1 - - - - - - - - - Cre09.g391352 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9467.t1 - - - - - - - - - Cre03.g202600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g4268.t1,Cre03.g202600.t1.1 - PTHR10891:SF163,PTHR10891 - - - - AT4G26470.1 - Calcium-binding EF-hand family protein Cre09.g391350 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g9466.t1,Cre09.g391350.t1.1, g9466.t2 - - - - - - - - - Cre05.g240350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g5543.t1 - - - - - - - - - Cre03.g175300 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - - - g3619.t1 PF02469 - - - - - - - - Cre12.g511750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g12314.t1,Cre12.g511750.t1.1 - - - - - - - - - Cre13.g592500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g14524.t1 PF00994,PF01507 PTHR23293 KOG2644 - - GO:0006777,GO:0003824,GO:0008152 AT5G03430.1 - phosphoadenosine phosphosulfate (PAPS) reductase family protein Cre03.g187950 SEE1 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3892.t1,SEE1 - PTHR10887,PTHR10887:SF27 KOG1073 - - - AT2G19120.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre09.g397179 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g9857.t1,Cre02.g134000.t1.1,Cre02.g134000.t1.2 - - - - - - - - - Cre02.g141606 DHC9 - 0 25 1.0 1.0 0 25 1.0 1.0 O n - 13 Flagellar inner arm dynein heavy chain, dynein c (monomeric) Flagellar inner arm dynein heavy chain, dynein c (monomeric). Identified in Chlamydomonas flagella in mass spec proteomic study by Yagi et al. [PMID: 19351714] g2722.t1,Cre15.g647450.t1.1,Cre15.g647450.t1.2,DHC9 PF08393,PF03028 PTHR10676 KOG3595 - - GO:0003777,GO:0007018,GO:0030286 - - - Cre02.g141600 EBM3 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g2658.t1,Cre02.g141600.t1.1,EBM3 - - - - - - AT5G01930.1 - Glycosyl hydrolase superfamily protein Cre06.g306150 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 10 - - g7093.t1 PF03235 - - - - - - - - Cre14.g626250 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 - - g15082.t1,Cre14.g626250.t1.1 - - - - - - AT3G17300.1 - - Cre03.g198000 PPP15 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g4101.t1,Cre03.g198000.t1.1,PPP15 PF00481 PTHR13832 KOG0698 - - GO:0003824 AT3G16800.1 - Protein phosphatase 2C family protein Cre02.g147600 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 15 - - g2509.t1 - - - - - - - - - Cre08.g359600 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g8423.t1,Cre08.g359600.t1.1 - - - - - - - - - Cre08.g362750 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g8495.t1,Cre08.g362750.t1.1 PF01223 PTHR13966 KOG3721 3.1.30.- K01173 GO:0003676,GO:0016787,GO:0046872 - - - Cre16.g685800 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 18 - - g16380.t1,Cre16.g685800.t1.1 - - - - - - AT2G30720.1 - Thioesterase/thiol ester dehydrase-isomerase superfamily protein Cre12.g533050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g13114.t1,Cre12.g533050.t1.1 PF08701,PF01926 PTHR11089:SF32,PTHR11089 KOG2484 - K14538 GO:0005525,GO:0005622 AT3G07050.1 - GTP-binding family protein Cre03.g178300 PRP38 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated - - - g3691.t1,Cre03.g178300.t1.1,PRP38 PF03371 PTHR23142 KOG2888 - K12850 - AT5G37370.1 ATSRL1 PRP38 family protein Cre17.g699650 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g16967.t1 - - - - - - - - - Cre05.g237550 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g5466.t1,Cre05.g237550.t1.1 - - - - - - - - - Cre16.g666400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g16083.t1 - PTHR23168 - - - - - - - Cre01.g010000 MAPK8 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 13 Mitogen-Activated Protein Kinase Mitogen-Activated Protein Kinase Homolog 8 (gI 11275338); Downstream kinase in the canonical MAP kinase pathway g252.t1,Cre01.g010000.t1.1,MAPK8 PF00069 PTHR24055,PTHR24055:SF69 KOG0660 2.7.11.24 K04371 GO:0004672,GO:0005524,GO:0006468 AT4G01370.1 ATMPK4,MPK4 MAP kinase 4 Cre05.g240800 NUO17 - 0 1 1.0 nan 0 1 1.0 nan C n - - NADH:ubiquinone oxidoreductase 17 kDa subunit Mitochondrial NADH:ubiquinone oxidoreductase (Complex I) 17 kDa subunit precursor, mitochondrial [ACCESSION AAS48192] similar to mammal complex I ESSS subunit, Yarrowia lipolytica NUWM subunit and At3g57785 gene product from Arabidopsis complex I [PMID: 1 g5553.t1,Cre05.g240800.t1.1 - - - - - - - - - Cre02.g085550 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g1583.t1,Cre02.g085550.t1.1 - - - - - - - - - Cre13.g587500 AOF8 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 6 - - g14413.t2,AOF8, g14413.t1,AOF8 PF01593 PTHR10742,PTHR10742:SF3 KOG0029 - - - AT4G14210.1 PDE226,PDS,PDS3 phytoene desaturase 3 Cre14.g623750 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 13 - - g15032.t1,Cre14.g623750.t1.1 - - - - - - - - - Cre12.g502350 HEL50 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g12524.t1,HEL50 PF00271,PF00270 PTHR13710:SF12,PTHR13710 KOG0353 3.6.4.12 K10899 GO:0003676,GO:0004386,GO:0005524,GO:0006310,GO:0008026 AT1G31360.1 ATRECQ2,MED34,RECQL2 RECQ helicase L2 Cre06.g278550 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 - - g6477.t1,Cre06.g278550.t1.1 PF04515 PTHR12385,PTHR12385:SF3 - - - - AT4G38640.1 - Plasma-membrane choline transporter family protein Cre07.g325400 LEU3 - 0 1 1.0 nan 0 1 1.0 nan C n - - 3-Isopropylmalate dehydrogenase, splicing variant a; 3-Isopropylmalate dehydrogenase, splicing variant b 3-Isopropylmalate dehydrogenase (Leu Biosynthesis), probably chloroplastic. Potential thioredoxin target [PMID: 15123830]. Two splicing variants g7516.t1,Cre07.g325400.t1.1,LEU3 PF00180 PTHR11835,PTHR11835:SF13 KOG0786 1.1.1.85 K00052 GO:0000287,GO:0016616,GO:0051287,GO:0055114,GO:0003862,GO:0005737,GO:0009098 AT1G80560.1 ATIMD2,IMD2 isopropylmalate dehydrogenase 2 Cre16.g691100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g15663.t2, g15663.t1,Cre16.g691100.t1.1 - - - - - - - - - Cre03.g208833 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 10 - - g4447.t1,Cre19.g755450.t1.1 PF00271,PF04851 PTHR14025 KOG2953 3.6.4.13 K10896 GO:0003676,GO:0004386,GO:0005524,GO:0003677,GO:0016787 AT1G35530.2 - DEAD/DEAH box RNA helicase family protein Cre04.g220850 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 5 - - g4821.t1,Cre04.g220850.t1.1 PF01061,PF00005 PTHR19241,PTHR19241:SF88 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT3G21090.1 - ABC-2 type transporter family protein Cre03.g176450 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 2 - - g3646.t1, g3646.t2 - - - - - - - - - Cre10.g419950 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g10393.t1 PF00536 - - - - - - - - Cre04.g214502 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g4686.t1 PF01370 PTHR10366:SF39,PTHR10366 KOG1371 5.1.3.2 K01784 GO:0003978,GO:0006012,GO:0003824,GO:0044237,GO:0050662 AT4G10960.1 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 Cre04.g214500 IDH3 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 Isocitrate dehydrogenase, NADP-dependent NADP specific isocitrate dehydrogenase (EC 1.1.1.42), mitochondrial precursor; similar to mammalian mitochondrial ICDH (e.g., GenBank XP_536192), predicted by Target-P to have an organellar targeting sequence (mitochondrial) g4684.t1 PF00180 PTHR11822 KOG1526 1.1.1.42 K00031 GO:0004450,GO:0006102,GO:0055114 AT1G54340.1 ICDH isocitrate dehydrogenase Cre04.g214501 PNP1,PNT2 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 10 - - g4685.t1,PNP1,PNT2 PF01138,PF03725,PF00013 PTHR11252 KOG1067 2.7.7.8 K00962 GO:0003723,GO:0004654,GO:0006402,GO:0006396 AT3G03710.1 PNP,RIF10 polyribonucleotide nucleotidyltransferase, putative Cre16.g694550 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 16 - - g15580.t1 PF00069 PTHR23257:SF310,PTHR23257 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre04.g214504 - 0 10 1.0 1.0 0 10 1.0 1.0 M n - 8 - - g4688.t1 PF00530 - - - - GO:0005044,GO:0016020 AT4G36180.1 - Leucine-rich receptor-like protein kinase family protein Cre04.g214505 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g4689.t1 - - - - - - - - - Cre01.g009800 FAP289 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 14 Flagellar Associated Protein, coiled-coil Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g248.t1,Cre01.g009800.t1.1 - - - - - - - - - Cre07.g330150 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 14 - - g7683.t1 - - - - - - - - - Cre11.g476026 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g11824.t1 - - - - - - - - - Cre12.g550350 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 11 - - g13541.t1,Cre12.g550350.t1.1 - - KOG4462 - - - - - - Cre03.g144707 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 10 - - g2899.t1,Cre01.g057550.t1.1,Cre01.g057550.t1.2 PF02878,PF02879,PF02880 PTHR22573:SF4,PTHR22573 KOG1220 - - GO:0005975,GO:0016868 AT1G70820.1 - phosphoglucomutase, putative / glucose phosphomutase, putative Cre04.g223500 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g4877.t1 PF00069 PTHR24055:SF158,PTHR24055 KOG0658 - - GO:0004672,GO:0005524,GO:0006468 AT1G73670.1 ATMPK15,MPK15 MAP kinase 15 Cre01.g027800 ATPvH,ATPVH - 0 1 1.0 nan 0 1 1.0 nan O n - 2 Vacuolar ATP synthase subunit H Vacuolar ATP synthase subunit H, V-ATPase H subunit, Vacuolar proton pump H subunit g636.t1,Cre01.g027800.t1.1,ATPVH,ATPvH PF03224,PF11698 PTHR10698 KOG2759 3.6.3.14 K02144 GO:0000221,GO:0015991,GO:0046961,GO:0016820 AT3G42050.1 - vacuolar ATP synthase subunit H family protein Cre08.g369720 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g8664.t2,Cre08.g369756.t2.1, g8664.t1,Cre08.g369756.t1.2 PF00664,PF00005 PTHR24223 KOG0058 - - GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT1G30420.1, AT2G34660.1 ATMRP12,MRP12, ATMRP2,EST4,MRP2 multidrug resistance-associated protein 2, multidrug resistance-associated protein 12 Cre07.g337200 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g7846.t1,Cre07.g337200.t1.1 - - - - - - - - - Cre03.g194800 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4034.t1,Cre03.g194800.t1.1 PF06807,PF03205 PTHR12755 KOG2749 2.7.1.78 K14399 - AT3G04680.1 CLPS3 CLP-similar protein 3 Cre04.g225900 VAM2,VAMP72 - 0 1 1.0 nan 0 1 1.0 nan O Y - 9 Endosomal R-SNARE protein, Vamp7/Nyv1-family (R.III) Endosomal R-SNARE protein, Vamp7/Nyv1-family (R.III). Expressed Protein. Class R.III SNARE, involved in Golgi/PM and Golgi/endosomal trafficking (PMID: 17596510). Most similar to VAMP72-family of land plants, part of 4-member gene family in Chlamydomona g4938.t1,Cre04.g225900.t1.1,VAM2 PF00957 PTHR21136,PTHR21136:SF46 KOG0859 - K08511 GO:0016021,GO:0016192 AT3G54300.1 ATVAMP727,VAMP727 vesicle-associated membrane protein 727 Cre01.g011750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g292.t1 PF10239 - KOG4744 - - - - - - Cre01.g016528 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g393.t1 PF00596 PTHR10640,PTHR10640:SF2 KOG2631 3.1.3.77 K09880 GO:0046872 AT5G53850.2 - haloacid dehalogenase-like hydrolase family protein Cre02.g097150 AGG5 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g1974.t1,Cre02.g097150.t1.1,AGG5 PF04749 PTHR15907,PTHR15907:SF13 - - - - - - - Cre16.g661876 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g15983.t1 - - - - - - - - - Cre10.g446700 ANK28 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g10989.t1,Cre10.g446700.t1.1,ANK28 PF00023,PF01529 PTHR22883 KOG0509 - - GO:0005515,GO:0008270 AT5G20350.1 TIP1 Ankyrin repeat family protein with DHHC zinc finger domain Cre17.g707000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g17130.t1,Cre17.g707000.t1.1 - - - - - - - - - Cre06.g291950 MRS3 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - - - - g6764.t1,Cre06.g291950.t1.1,MRS3 PF01544 PTHR13890:SF3,PTHR13890 KOG3116 - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 AT1G16010.1 MGT2,MRS2-1 magnesium transporter 2 Cre09.g402450 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g9213.t1,Cre09.g402450.t1.1 PF00004 PTHR23073:SF8,PTHR23073 KOG0727 - K03063 GO:0005524 AT5G58290.1 RPT3 regulatory particle triple-A ATPase 3 Cre12.g508100 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 - - g12394.t1 - PTHR21580 - - - - - - - Cre09.g394880 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9794.t1,Cre02.g131250.t1.1,Cre02.g131250.t1.2 PF07986 PTHR16052 - - - - AT3G57890.1 - Tubulin binding cofactor C domain-containing protein Cre03.g161750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g3314.t1 - - - - - - AT4G31080.1 - Protein of unknown function (DUF2296) Cre16.g680566 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 13 - - g16778.t1,Cre01.g068300.t1.1 PF00481 PTHR13832,PTHR13832:SF188 KOG0698 - - GO:0003824 AT3G62260.1 - Protein phosphatase 2C family protein Cre14.g623900 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15035.t2, g15035.t1 - - - - - - - - - Cre12.g554850 TRX7,TRXh1,TRXh2 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 Thioredoxin h2, cytosolic Thioredoxin h2, cytosolic, splicing variant b. This is the second longest of three splicing variants differing on 3\' end. This variant contains an intron in the 3\'UTR. Deduced protein similar to splicing variant a. The protein corresponds to the sequenced g13437.t1,Cre12.g554850.t1.1,TRX7,TRXh2 PF00085 PTHR10438:SF16,PTHR10438 KOG0907 - K03671 GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT3G51030.1 ATTRX H1,ATTRX1,TRX1 thioredoxin H-type 1 Cre13.g606300 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g14620.t2, g14620.t1 - - - - - - - - - Cre02.g112701 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 6 - - g2321.t1,Cre02.g112700.t1.3 - - - - - - - - - Cre09.g398993 HPD1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 7 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27); (4HPPD) (HPD) (HPPDase) g9907.t1,Cre02.g136050.t1.1,Cre02.g136050.t1.2,HPD1 PF00903 PTHR11959 KOG0638 1.13.11.27 K00457 GO:0003868,GO:0009072 AT1G06570.1 HPD,PDS1 phytoene desaturation 1 Cre02.g142650 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g2634.t1 - - - - - - - - - Cre02.g144550 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g2582.t1,Cre02.g144550.t1.1 PF00999 PTHR10110 KOG4505 - - GO:0006812,GO:0015299,GO:0016021,GO:0055085 AT1G79610.1 ATNHX6,NHX6 Na+/H+ antiporter 6 Cre03.g149700 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 10 - - g3045.t1,Cre03.g149700.t1.1 - - - - - - - - - Cre04.g228500 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g4999.t1,Cre04.g228500.t1.1 - - - - - - - - - Cre06.g289600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g6720.t1,Cre06.g289600.t1.1 - - - - - - - - - Cre10.g459300 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 18 - - g11265.t1,Cre10.g459300.t1.1 - - - - - - - - - Cre09.g391100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated - - - g9470.t1,Cre09.g391100.t1.1 - - - - - - - - - Cre01.g041426 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g927.t1 - - - - - - - - - Cre08.g361050 CNX3 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 Molybdenum cofactor synthesis-step 1 protein MoaC family; molybdopterin biosynthesis enzyme g8454.t1,Cre08.g361050.t1.1,CNX3 PF01967 PTHR26250 - - K03639 GO:0006777 AT1G01290.1 CNX3 cofactor of nitrate reductase and xanthine dehydrogenase 3 Cre01.g014800 MSH7 - 0 4 1.0 1.0 0 4 1.0 1.0 C Y upregulated - - - g358.t1 PF00488 PTHR11361:SF14,PTHR11361 - - K07456 GO:0005524,GO:0006298,GO:0030983,GO:0003684,GO:0045005 AT1G65070.2 - DNA mismatch repair protein MutS, type 2 Cre12.g516150 NAT27 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g12732.t1,Cre12.g516150.t1.1,NAT27 PF00583 - - - - GO:0008080,GO:0008152 AT2G27980.1 - Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain Cre01.g037150 CLV6 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - - - - g833.t1,CLV6 PF00654 PTHR11689:SF49,PTHR11689 - - - GO:0005247,GO:0006821,GO:0016020,GO:0055085 AT4G35440.1 ATCLC-E,CLC-E,CLCE chloride channel E Cre02.g091700 RIB72 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 12 Protofilament ribbon protein of flagellar microtubules Rib72, a novel component of the ribbon compartment of flagellar microtubules. g1718.t1,Cre02.g091700.t1.1 PF06565 PTHR12086 KOG0043 - - - - - - Cre15.g635376 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g15323.t1 PF01457 - - - - GO:0004222,GO:0006508,GO:0007155,GO:0008270,GO:0016020 - - - Cre10.g448550 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g11028.t1 - - - - - - - - - Cre02.g088651 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g1652.t1,Cre02.g088651.t1.1 - - - - - - - - - Cre13.g570951 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g14042.t1 - - - - - - - - - Cre06.g261850 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g5884.t1,Cre06.g261850.t1.1 - - - - - - - - - Cre10.g442700 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g10890.t1,Cre10.g442700.t1.1 PF06068 PTHR11093 KOG2680 3.6.4.12 K11338 GO:0003678,GO:0005524 AT5G67630.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre02.g096950 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 10 - - g1970.t1,Cre02.g096950.t1.1 PF09444 - - - - - - - - Cre01.g002600 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g62.t1,Cre01.g002600.t1.1 - - - - - - - - - Cre07.g335200 EFG12,GBA1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 17 Translation elongation factor EFG/EF2 related to membrane GTP-binding protein LepA Putative translation elongation factor EFG/EF2 related to GTP-binding protein TypA; Signal Peptide by NN 1/5, Target P suggests organellar localization for model. Previously annotated as GBA1 g7804.t1,EFG12,GBA1 PF03144,PF00679,PF00009 PTHR23115:SF14,PTHR23115 KOG0462 - - GO:0005525,GO:0003924 AT5G13650.1 - elongation factor family protein Cre07.g320000 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7400.t3,Cre07.g320000.t1.1, g7400.t1, g7400.t2 PF05686 PTHR12203 - - - - - - - Cre07.g351100 PRX - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 14 - - g8170.t1,Cre07.g351100.t1.1,PRX PF01152 - - - - GO:0015671,GO:0019825 - - - Cre15.g641250 CNE1 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15459.t1,Cre15.g641250.t1.1,CNE1 PF00036 PTHR23056,PTHR23056:SF4 KOG0034 - K06268 - AT3G18430.1 - Calcium-binding EF-hand family protein Cre07.g354551 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 13 - - g8248.t1,Cre07.g354551.t1.1 - - - - - - - - - Cre07.g321750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g7436.t1, g7436.t2,Cre07.g321750.t1.1 - - - - - - - - - Cre06.g283034 - 0 2 1.0 1.0 0 2 1.0 1.0 SP Y - 10 - - g6582.t1 PF08538 - KOG4840 - - - AT5G19050.1 - alpha/beta-Hydrolases superfamily protein Cre16.g691351 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g15656.t1,Cre16.g691300.t1.3 - - - - - - - - - Cre16.g691350 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 15 - - g15655.t1 PF00069 PTHR11795:SF314,PTHR11795 - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre16.g691353 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 11 - - g15658.t1,Cre16.g691250.t1.2 PF07719 - - - - - - - - Cre16.g691352 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g15657.t1 - - - - - - - - - Cre17.g747897 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 13 - - g18074.t2,Cre20.g757500.t1.1, g18074.t1,Cre20.g757500.t2.1 - - - - - - - - - Cre10.g432750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g10677.t1 - - - - - - - - - Cre06.g269700 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g6051.t1,Cre06.g269700.t1.1 - - - - - - - - - Cre08.g366874 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g8597.t1,Cre08.g366874.t1.1 - - - - - - - - - Cre14.g626400 CYP743C1,CYP33 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 8 Cytochrome P450, CYP197 superfamily Cytochrome P450, CYP197 superfamily, CYP197B family. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP743 family has best BLAST hits to CYP3 family members (animal sequ g15085.t1,Cre14.g626400.t1.1,CYP33 PF00067 PTHR24301,PTHR24301:SF127 KOG0158 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT5G38450.1 CYP735A1 cytochrome P450, family 735, subfamily A, polypeptide 1 Cre09.g390763 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 Small Rab-related GTPase Expressed Protein. Similar to the RabB/Rab2 type GTPase, involved in vesicle trafficking in the ER-Golgi system. Identical to YPTC4 [gi|2500074|sp|Q39570|YPT4_CHLRE, PMID: 7789809]. Found in the flagellar proteome [PMID: 15998802]. Previously annotated a g9677.t1,Cre02.g126100.t1.1,Cre02.g126100.t1.2 PF00071 PTHR24073,PTHR24073:SF246 KOG0098 - K07976 - AT4G17170.1 AT-RAB2,ATRAB-B1B,ATRAB2A,ATRABB1C,RAB-B1B,RAB2A,RABB1C RAB GTPase homolog B1C Cre09.g411350 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g10185.t1 - - - - - - - - - Cre10.g458550 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g11248.t1,Cre10.g458550.t1.1 PF02575 - - - - - AT2G24020.1 - Uncharacterised BCR, YbaB family COG0718 Cre15.g639400 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g15419.t2,Cre15.g639400.t1.1, g15419.t1 PF00814,PF02367,PF01230 PTHR11735,PTHR11735:SF6 KOG2707 - - GO:0004222,GO:0006508 AT2G45270.1 GCP1 glycoprotease 1 Cre01.g045850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g1029.t1 PF00665,PF07727 PTHR11439 - - - GO:0003677,GO:0015074 AT4G23160.1 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 Cre18.g748347 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g18083.t1,Cre31.g779700.t1.1 - - - - - - - - - Cre01.g027650 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 12 - - g632.t1,Cre01.g027650.t1.1 - - - - - - - - - Cre09.g386143 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 8 - - g9091.t1,Cre29.g777800.t1.1,Cre29.g777800.t1.2 - - - - - - - - - Cre02.g119751 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 17 - - g2487.t1 - - - - - - - - - Cre01.g013050 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 17 - - g321.t1 PF01344 PTHR23244 - - - GO:0005515 AT1G18610.1 - Galactose oxidase/kelch repeat superfamily protein Cre18.g749697 FUT11 - 0 1 1.0 nan 0 1 1.0 nan O n - - Alpha 1,3 fucosyltransferase Related to Glycoprotein 3-alpha-L-fucosyltransferase A (Core alpha-(1,3)-fucosyltransferase) (Fuc-T C3) (FucTA) (FucT1)(AtFUT11) g18110.t1,Cre31.g780450.t1.1,Cre31.g780450.t1.2,FUT11 PF00852 PTHR11929:SF6,PTHR11929 - 2.4.1.214 K00753 GO:0006486,GO:0008417,GO:0016020 AT1G49710.1 ATFUT12,FUCT2,FUCTB,FUT12 fucosyltransferase 12 Cre13.g588736 - 0 17 1.0 1.0 0 17 1.0 1.0 SP n upregulated 9 - - g14443.t1 - - - - - - - - - Cre16.g682699 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 17 - - g16797.t1,Cre01.g069200.t1.1,Cre01.g069200.t1.2 - - - - - - - - - Cre13.g580500 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g14260.t2, g14260.t1 PF07933 PTHR12847 KOG2500 - - GO:0006897,GO:0016020 AT3G58600.1 - Adaptin ear-binding coat-associated protein 1 NECAP-1 Cre16.g686398 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g16830.t1 - - - - - - - - - Cre01.g007950 CYP55B1,CYP2 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 11 Cytochrome P450, CYP55 superfamily, CYP55A family Cytochrome P450, CYP55 superfamily, CYP55A family. Similar to fungal protein, shares one intron boundary with CYP55A6. CYP55A1 (P450nor) in Fusarium oxysporum is inducible by nitrate or nitrite and acts as a nitric oxide reductase. The CYP55 family memb g204.t1,CYP2,CYP55B1 PF00067 - KOG0156 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT1G05160.1 ATKAO1,CYP88A3,KAO1 cytochrome P450, family 88, subfamily A, polypeptide 3 Cre03.g207713 ISA3 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 Isoamylase, starch debranching enzyme Starch debranching enzyme; Misplaced, loosely branched chains are trimmed by this DBE from a maturing structure to allow polysaccharide crystallization g4436.t1,Cre19.g755050.t1.1,ISA3 PF00128,PF02922 PTHR10357:SF75,PTHR10357 KOG0470 3.2.1.- K02438 GO:0003824,GO:0005975,GO:0043169,GO:0004553 AT4G09020.1 ATISA3,ISA3 isoamylase 3 Cre03.g212641 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g4482.t1,Cre19.g757000.t1.1,Cre19.g757000.t1.2, g4482.t2,Cre19.g757000.t2.1 PF02135 - - - - GO:0003712,GO:0004402,GO:0005634,GO:0006355,GO:0008270 AT1G79000.2 ATHAC1,ATHPCAT2,HAC1,PCAT2 histone acetyltransferase of the CBP family 1 Cre09.g395900 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g9371.t1,Cre09.g395900.t1.1 - - - - - - - - - Cre06.g280750 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 11 - - g6530.t1 - PTHR24633:SF12,PTHR24633 - - - - - - - Cre10.g464250 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g11375.t1,Cre10.g464250.t1.1 PF10184 - - - - - AT3G04890.1 - Uncharacterized conserved protein (DUF2358) Cre12.g558353 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g13826.t1,Cre27.g776000.t1.1,Cre27.g776000.t1.2 - - - - - - - - - Cre12.g558350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g13362.t1,Cre12.g558350.t1.1 - - - - - - - - - Cre01.g029950 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 5 - - g680.t1,Cre01.g029950.t1.1 - - - - - - - - - Cre02.g100300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g2042.t1 PF00454 PTHR15245,PTHR15245:SF11 KOG2381 - - GO:0016773 AT1G13640.1 - Phosphatidylinositol 3- and 4-kinase family protein Cre12.g549350 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 - - g13561.t1,Cre12.g549350.t1.1 - - - - - - - - - Cre03.g154300 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 14 - - g3144.t1 - - - - K14319 - AT1G10510.1 emb2004 RNI-like superfamily protein Cre16.g656400 SQD1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 UDP-sulfoquinovose synthase UDP-sulfoquinovose synthase, an NAD dependent epimerase/dehydratase (see NED series). PMID:15029954 g15865.t1,Cre16.g656400.t1.1 PF01370 PTHR10366,PTHR10366:SF22 KOG1371 3.13.1.1 K06118 GO:0003824,GO:0044237,GO:0050662 AT4G33030.1 SQD1 sulfoquinovosyldiacylglycerol 1 Cre13.g565150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g13904.t1 PF00400 - - - - - AT5G05970.2 NEDD1 Transducin/WD40 repeat-like superfamily protein Cre05.g242858 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g5292.t1,Cre61.g792450.t1.1 - - - - - - - - - Cre05.g242859 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 - - g5293.t1,Cre61.g792400.t1.1,Cre61.g792400.t1.2 - - - - - - - - - Cre10.g433150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10686.t1,Cre10.g433150.t1.1 PF07646 PTHR23244,PTHR23244:SF75 - - - GO:0005515 AT2G36360.1 - Galactose oxidase/kelch repeat superfamily protein Cre10.g461150 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 - - g11306.t1,Cre10.g461150.t1.1 PF00069 PTHR26263,PTHR26263:SF103 - - - GO:0004672,GO:0005524,GO:0006468 AT4G08500.1 ARAKIN,ATMEKK1,MAPKKK8,MEKK1 MAPK/ERK kinase kinase 1 Cre10.g449700 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 15 - - g11055.t1 PF00582 - - - - GO:0006950 - - - Cre05.g243451 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g5274.t1 PF02545 PTHR11746 KOG1509 - - GO:0005737 AT5G66550.1 - Maf-like protein Cre03.g145407 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g2935.t1,Cre01.g059100.t1.1,Cre01.g059100.t1.2 PF00023,PF00642 - KOG4031 - - GO:0005515,GO:0003676,GO:0008270 - - - Cre05.g243453 - 0 1 1.0 nan 0 1 1.0 nan C n - 13 - - g5276.t1 - - - - - - - - - Cre01.g019750 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 9 - - g461.t1 PF02518,PF09239 - - - - GO:0005524,GO:0003677,GO:0003918,GO:0005694,GO:0006265 AT3G20780.1 ATTOP6B,BIN3,HYP6,RHL3,TOP6B topoisomerase 6 subunit B Cre05.g243454 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 - - g5277.t1 PF00520 PTHR10217 - - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT2G26650.1 AKT1,ATAKT1,KT1 K+ transporter 1 Cre17.g729901 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 - - g17640.t1 - - - - - - - - - Cre17.g729900 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g17639.t1,Cre17.g729900.t1.1 - - - - - - AT4G01935.1 - - Cre01.g043450 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g972.t1,Cre01.g043450.t1.1 - - - - - - - - - Cre07.g344634 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g8019.t1,Cre07.g344650.t1.3, g8019.t2,Cre07.g344650.t2.1 - - - - - - - - - Cre01.g042502 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g952.t1 PF00089,PF00530 PTHR19331,PTHR19331:SF418 KOG2748 - - GO:0004252,GO:0006508,GO:0005044,GO:0016020 - - - Cre05.g238761 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5505.t1 - - - - - - - - - Cre10.g421021 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g10419.t1,Cre10.g421021.t1.1 - - - - - - - - - Cre06.g305150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g7063.t1 - - - - - - - - - Cre17.g714300 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17296.t1,Cre17.g714300.t1.1 - - - - - - - - - Cre07.g356950 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g8297.t1 - - - - - - - - - Cre01.g014050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 - - g343.t1,Cre01.g014050.t1.1 - PTHR12681 KOG1763 - - - AT2G20280.1 - Zinc finger C-x8-C-x5-C-x3-H type family protein Cre06.g267700 SPP2,SPP1B - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 9 Signal peptide peptidase SppA, protease IV, signal peptide peptidase, serine endopeptidase of S49 family (ClpP clan); contains 2 S49 domains, of which the second only appears functional; probably associated with thylakoid membrane and involved in cleavage of membrane proteins or g6007.t1,Cre06.g267700.t1.1,SPP1B,SPP2 PF01343 PTHR10381,PTHR10381:SF2 - - - GO:0006508,GO:0008233 AT1G73990.1 SPPA,SPPA1 signal peptide peptidase Cre06.g256600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 17 - - g5767.t1,Cre06.g256600.t1.1 - - - - - - - - - Cre11.g467658 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 15 - - g11588.t1,Cre18.g745859.t1.1 - - - - - - - - - Cre11.g467654 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g11584.t1,Cre18.g746050.t3.1, g11584.t2,Cre18.g746050.t2.1, g11584.t3,Cre18.g746050.t1.1,Cre18.g746050.t1.2 PF00271,PF07717,PF00270,PF04408 PTHR18934 KOG0922 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT4G18465.1 - RNA helicase family protein Cre11.g467657 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 13 - - g11587.t1,Cre18.g745900.t1.1 - - - - - - - - - Cre11.g467650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11733.t1, g11733.t2 - - - - - - - - - Cre11.g467651 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 15 - - g11581.t1,Cre18.g746200.t1.1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre11.g467652 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g11582.t1,Cre18.g746150.t1.1 - - - - - - - - - Cre11.g467653 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g11583.t1 - - - - - - - - - Cre06.g251050 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g5623.t1 PF00069 PTHR22971 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT3G29160.1 AKIN11,ATKIN11,KIN11,SNRK1.2 SNF1 kinase homolog 11 Cre16.g669500 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g16240.t1 - - - - - - - - - Cre12.g495050 OPR51 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 5 - - g12122.t1,Cre12.g495050.t1.1 - - - - - - - - - Cre24.g755497 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 7 - - g18258.t1,Cre05.g231350.t1.1,Cre05.g231350.t1.2 PF03073 PTHR10057:SF0,PTHR10057 KOG3797 - K05770 GO:0016021 AT2G47770.1 ATTSPO,TSPO TSPO(outer membrane tryptophan-rich sensory protein)-related Cre08.g383400 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 17 - - g9026.t1 PF00530 PTHR19331,PTHR19331:SF367 - - - GO:0005044,GO:0016020 - - - Cre04.g218600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g4765.t1,Cre04.g218600.t1.1 - - - - - - - - - Cre06.g308050 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 14 - - g7132.t1,Cre06.g308050.t1.1 - - - - - - - - - Cre07.g341000 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g7975.t1 - - - - - - - - - Cre12.g517000 MAPKKK7 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - Mitogen-Activated Protein Kinase Kinase Kinase MAP3K7 g12751.t1,MAPKKK7 PF07714 PTHR23257:SF353,PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT3G24715.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre07.g332600 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 13 - - g7737.t1 - - - - - - - - - Cre03.g187300 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g3880.t1 PF00069 PTHR24362,PTHR24362:SF159 - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre03.g180650 DEG7 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 DegP-type protease Serine protease, trypsin family, DegP type (HtrA) (protease Do) most similar to AT3g03380 (DegP7) [PMID: 11299370, PMID: 12185496] and fungal signaling-associated PDZ-domain proteins; three PDZ domains at C-term, probably involved in substrate recognition g3744.t1 - PTHR22939:SF15,PTHR22939 KOG1421 - - - AT3G03380.1 DegP7 DegP protease 7 Cre16.g647950 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 6 - - g15683.t1 - - - - - - - - - Cre08.g368176 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8627.t1 - - - - - - - - - Cre13.g591501 PUS2 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 15 - - g14504.t1,Cre13.g591500.t1.3,PUS2 PF01416 PTHR11142 KOG4393 5.4.99.12 K06173 GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT3G06950.1 - Pseudouridine synthase family protein Cre02.g095098 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g1872.t1,Cre11.g472350.t1.1,Cre11.g472350.t1.2 PF02221 - KOG4680 - - - AT3G44100.1 - MD-2-related lipid recognition domain-containing protein Cre05.g241350 - 0 19 1.0 1.0 0 19 1.0 1.0 SP n - 18 - - g5564.t1 PF01061,PF00005 PTHR25911:SF32,PTHR25911 - - - GO:0016020,GO:0005524,GO:0016887 AT2G37010.1 ATNAP12,NAP12 non-intrinsic ABC protein 12 Cre07.g340950 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 10 - - g7976.t1 PF03407 PTHR10994:SF5,PTHR10994 - - - GO:0005783 AT2G35610.1 XEG113 xyloglucanase 113 Cre02.g095091 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g1865.t1,Cre11.g472100.t1.1 PF08242 PTHR10108,PTHR10108:SF53 KOG0956 - - - - - - Cre05.g236650 CYG63 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 6 - - g5444.t1 PF00211 PTHR11920:SF133,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre02.g095097 FKB17-2 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase); probably chloroplastic (by homology to At1g18170), anchored in the thylakoid membrane on lumenal surface (RR motif without SP cleavage site) [PMID: 15701785] g1871.t1,Cre11.g472300.t1.1,FKB17-2, g1871.t2,Cre11.g472300.t2.1 PF00254 PTHR10516 KOG0552 - - GO:0006457 AT1G18170.1 - FKBP-like peptidyl-prolyl cis-trans isomerase family protein Cre02.g095095 PHC12 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 Cell wall protein pherophorin-C12 Pherophorin-C12 (PHC12) [PMID: 16367971]; very similar to extracellular matrix protein (cell wall protein) pherophorin-C6 [Genbank entry DQ196112], which belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich g1869.t1,PHC12 PF12499 - KOG1087 - - - - - - Cre06.g259200 EFS1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g5827.t1,EFS1 PF00009,PF03144 PTHR23115,PTHR23115:SF30 KOG0461 - - GO:0003924,GO:0005525 AT4G20360.1 ATRAB8D,ATRABE1B,RABE1b RAB GTPase homolog E1B Cre10.g445700 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 17 - - g10966.t1 PF00069,PF07714 PTHR23257,PTHR23257:SF99 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre03.g163050 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 9 - - g3342.t1 PF07944 - - - K09955 - AT5G12950.1 - Putative glycosyl hydrolase of unknown function (DUF1680) Cre10.g458300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g11242.t1,Cre10.g458300.t1.1 - - - - - - - - - Cre16.g668750 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 11 - - g16260.t1 - PTHR10588 - - - - - - - Cre16.g653050 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g15792.t1 PF00588 PTHR12029,PTHR12029:SF27 - - - GO:0003723,GO:0006396,GO:0008173 - - - Cre10.g442950 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g10895.t1,Cre10.g442950.t1.1 - - - - - - AT1G29700.1 - Metallo-hydrolase/oxidoreductase superfamily protein Cre07.g346800 FAO8 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 13 - - g8070.t1,Cre07.g346800.t1.1,FAO8 PF01266 PTHR13847:SF57,PTHR13847 - - - GO:0016491 AT5G48440.1 - FAD-dependent oxidoreductase family protein Cre02.g117700 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g2441.t1 - - - - - - - - - Cre17.g697900 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g16925.t1 - - - - - - - - - Cre12.g510034 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g12350.t1 - PTHR22904,PTHR22904:SF169 - - - - AT1G77230.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre14.g610050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g14705.t1,Cre14.g610050.t1.1 PF06209 - - - - GO:0005634,GO:0045892 - - - Cre14.g631100 CEP13,SRR29 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 16 Cysteine endopeptidase Cysteine-type endopeptidase, papain type. Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID:14995912). Previously annotated as SRR29 g15208.t1,CEP13,SRR29 PF00112,PF00059,PF00754,PF01822,PF00530,PF01476 PTHR12411:SF144,PTHR12411 - - - GO:0006508,GO:0008234,GO:0005488,GO:0007155,GO:0005044,GO:0016020,GO:0016998 AT4G11320.1 - Papain family cysteine protease Cre12.g499600 SUFS2,CSD5 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 Cysteine desulfurase Sequence similarity to group-II cysteine desulfurase, but conserved active site is lacking. COG0520; CsdB; related to cysteine desulfurase, selenocysteine lyase, aminotransferase, cysteine sulfinate desulfinase. Previously annotated as SUFS2. May have g12586.t1,CSD5,SUFS2 PF00266 PTHR11601 - - - GO:0008152 AT1G08490.1 ATCPNIFS,ATNFS2,ATSUFS,CPNIFS,SUFS chloroplastic NIFS-like cysteine desulfurase Cre05.g240400 SOM2 - 0 18 1.0 1.0 0 18 1.0 1.0 O n - 8 - - g5544.t1,Cre05.g240400.t1.1,SOM2 PF00891 PTHR11746 - - - GO:0008171 AT1G51990.2 - O-methyltransferase family protein Cre18.g749597 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g18108.t1 - - - - - - - - - Cre06.g287050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 5 - - g6668.t1,Cre06.g287050.t1.1 - - - - - - - - - Cre06.g279950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g6508.t1 - - - - - - - - - Cre03.g188300 RBOL1,RBO1 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - Respiratory burst oxidase Putative NADPH oxidase homolog, related to plant respiratory burst oxidase; respiratory burst oxidase; Ferric reductase like transmembrane component; possible NADPH oxidase activity; possible Cytochrome b-245 heavy chain. Previously annotated as RBOL1. C g3900.t1,RBOL1 PF01794,PF08022 PTHR11972 - 1.11.1.-,1.6.3.- K13447 GO:0005506,GO:0009055,GO:0016021,GO:0016491,GO:0050660 AT4G25090.1 - Riboflavin synthase-like superfamily protein Cre14.g623300 NCP1,NCPR1,NCR1 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - - NADPH--cytochrome P450 reductase-related protein NADPH--cytochrome P450 reductase; (CPR) (P450R); Fe-S oxidoreductases; Radical SAM superfamily. Previously annotated as NCPR1 g15023.t1,Cre14.g623300.t1.1,NCP1,NCPR1,NCR1 PF08608,PF04055,PF00258 PTHR13930 KOG1160 - - GO:0003824,GO:0051536,GO:0010181,GO:0016491 AT1G75200.1 - flavodoxin family protein / radical SAM domain-containing protein Cre04.g228850 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 15 - - g5008.t1 PF00069 PTHR24349:SF117,PTHR24349 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT1G53570.1 MAP3KA,MAPKKK3 mitogen-activated protein kinase kinase kinase 3 Cre14.g630811 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g15194.t1 - - - - - - - - - Cre03.g194250 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g4020.t1,Cre03.g194250.t1.1 PF01088 PTHR10589,PTHR10589:SF17 KOG1415 3.4.19.12 K05609 GO:0004221,GO:0005622,GO:0006511 AT4G17510.1 UCH3 ubiquitin C-terminal hydrolase 3 Cre08.g371301 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g8697.t1 - - - - - - - - - Cre16.g678750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g16538.t1,Cre16.g678750.t1.1 - - - - - - - - - Cre10.g424500 CPK4 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g10495.t1,Cre10.g424500.t1.1,CPK4 PF00294 PTHR10584,PTHR10584:SF29 KOG2855 2.7.1.15 K00852 - AT1G17160.1 - pfkB-like carbohydrate kinase family protein Cre12.g530950 TGL18 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g13069.t1,TGL18 PF01734 PTHR12406:SF1,PTHR12406 - - - GO:0006629 AT1G33270.1 - Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein Cre11.g477200 IFR1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g11850.t1,Cre11.g477200.t1.1,IFR1, g11850.t2,IFR1 PF05368 PTHR14194,PTHR14194:SF8 - 1.3.1.- K00224 - AT1G75290.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre03.g193700 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 8 - - g4009.t1 PF00561 PTHR10992,PTHR10992:SF200 - - - - AT3G61540.1 - alpha/beta-Hydrolases superfamily protein Cre12.g502251 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 17 - - g12527.t1,Cre12.g502227.t1.2 PF04640 PTHR22572:SF31,PTHR22572 - - - - AT4G17900.1 - PLATZ transcription factor family protein Cre12.g502250 PLAP4,PLP4 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - Plastid lipid associated protein Conserved expressed protein related to plastid lipid associated protein PAP (PMID: 16461379); some similarity to Arabidopsis protein gi|15241221|ref|NP_197494.1. Previously annotated as PLAP4 g12526.t1,Cre12.g502250.t1.1,PLP4 PF04755 - - - - GO:0005198,GO:0009507 AT5G19940.1 - Plastid-lipid associated protein PAP / fibrillin family protein Cre08.g360550 ERM3 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 14 ERD4-related membrane protein NO-forming, copper-containing nitrite reductase. N-terminus: transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration); belongs to a cluster g8443.t1,ERM3 PF07732 PTHR11709:SF1,PTHR11709 - - - GO:0005507,GO:0016491,GO:0055114 - - - Cre09.g393050 PRM - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 3 - - g9428.t1,Cre09.g393050.t1.1,PRM - PTHR11006,PTHR11006:SF4 - - - - AT4G16570.1 ATPRMT7,PRMT7 protein arginine methyltransferase 7 Cre02.g084150 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 16 - - g1551.t1 - PTHR24420,PTHR24420:SF496 - - - - AT1G58190.1 AtRLP9,RLP9 receptor like protein 9 Cre16.g669900 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated - - - g16232.t1,Cre16.g669900.t1.1 - - - - - - - - - Cre09.g386800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9569.t1,Cre09.g386800.t1.1 - - - - - - - - - Cre15.g634650 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 18 - - g15303.t1,Cre15.g634650.t1.1 - - - - - - - - - Cre17.g705050 LIC1 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - Ligand-gated ion-channel Some similarity to neuromediator-gated ion channels (nicotinic acetylcholine-gated ion channel); belongs to a small family of three linked genes g17089.t1,Cre17.g705050.t1.1,LIC1 PF02932,PF02931 PTHR18945,PTHR18945:SF96 - - - GO:0006811,GO:0016021,GO:0016020,GO:0005230,GO:0006810 - - - Cre02.g085200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g1574.t1 PF01585 PTHR13948,PTHR13948:SF19 - - - GO:0003676,GO:0005622 AT5G08535.1 - D111/G-patch domain-containing protein Cre16.g655450 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 18 - - g15845.t1, g15845.t2 PF01061,PF00005 PTHR19241,PTHR19241:SF10 KOG0065 - - GO:0016020,GO:0005524,GO:0016887 AT2G29940.1 ATPDR3,PDR3 pleiotropic drug resistance 3 Cre12.g504950 UO,UOX,UOX1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 Urate oxidase II Uricase; urate oxidase II (UO) [AF195795; PMID: 11469597]. Previously annotated as UOX; also known as UO g12469.t1,Cre12.g504950.t1.1,UO,UOX PF01014 PTHR10395:SF1,PTHR10395 KOG1599 1.7.3.3 K00365 GO:0006144,GO:0016491,GO:0055114 AT2G26230.1 - uricase / urate oxidase / nodulin 35, putative Cre09.g398550 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g9306.t1,Cre09.g398550.t1.1 PF00004 PTHR23077:SF16,PTHR23077 - - - GO:0005524 AT3G01610.1 CDC48C,emb1354 cell division cycle 48C Cre12.g485632 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g12053.t1,Cre12.g485632.t1.1 - - - - - - - - - Cre06.g308600 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g7143.t1,Cre06.g308600.t1.1 - - - - - - - - - Cre11.g476550 ADH11 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 5 - - g11837.t1,Cre11.g476550.t1.1,ADH11 PF00107,PF08240 PTHR11695,PTHR11695:SF293 KOG0025 - - GO:0008270,GO:0016491,GO:0055114 AT3G45770.1 - Polyketide synthase, enoylreductase family protein Cre03.g206900 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 8 - - g4173.t1 - PTHR12984:SF5,PTHR12984 KOG2137 - - - AT1G71410.1 - ARM repeat superfamily protein Cre04.g215650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g4659.t1 PF08743 PTHR16140 KOG2866 - - - AT3G20760.1 - Nse4, component of Smc5/6 DNA repair complex Cre16.g689250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g16180.t1 PF04564,PF06701 PTHR24420:SF938,PTHR24420 - - - GO:0000151,GO:0004842,GO:0016567,GO:0046872 AT1G24330.1 - ARM repeat superfamily protein Cre06.g296500 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 - - g6857.t1,Cre06.g296500.t1.1 PF01753 PTHR13244 - - - GO:0008270 AT5G65450.1 UBP17 ubiquitin-specific protease 17 Cre03.g161363 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g3307.t1,Cre03.g161363.t1.1 - - - - - - - - - Cre49.g761297 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 9 - - g18404.t1 - - - - - - - - - Cre03.g190050 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 16 - - g3935.t1 PF00659,PF00069 PTHR11584:SF271,PTHR11584 KOG0598 2.7.11.21 K06660 GO:0005515,GO:0004672,GO:0005524,GO:0006468 AT2G44830.1 - Protein kinase superfamily protein Cre05.g238150 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g5482.t1,Cre05.g238150.t1.1 PF07646 PTHR23244 - - - GO:0005515 AT1G51550.1 - Kelch repeat-containing F-box family protein Cre10.g420500 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g10404.t1 PF00520 - - - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 - - - Cre16.g674900 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - - - - g16621.t1 PF00069 PTHR23257:SF300,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre09.g411900 SHMT3 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 1 Serine hydroxymethyltransferase 3 Glycine/serine hydroxymethyltransferase-like protein (by homology to Arabidopsis gene AT4G32520) g10198.t1,SHMT3 PF00464 PTHR11680 KOG2467 2.1.2.1 K00600 GO:0004372,GO:0006544,GO:0006563 AT4G32520.1 AtSHMT3,SHM3 serine hydroxymethyltransferase 3 Cre08.g362950 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g8500.t1 - - - - - - - - - Cre12.g560000 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 11 - - g13319.t1 - - - - - - - - - Cre02.g109650 GSP1 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 6 Homeobox transcription factor expressed in plus gametes Gamete-specific homeodomain protein GSP1, expressed only in mating type (+) gametes, late in gametogenesis [PMID: 9864368, PMID: 18510927]. GSP1\'s activity may be modulated by phosphorylation [PMID: 10567416]. May be involved in regulating zygote gene exp g2249.t1 - PTHR11850:SF40,PTHR11850 - - - - AT1G19700.1 BEL10,BLH10 BEL1-like homeodomain 10 Cre09.g406750 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 9 - - g10084.t2, g10084.t1 PF00201 PTHR11926 - - - GO:0008152,GO:0016758 AT3G02100.1 - UDP-Glycosyltransferase superfamily protein Cre15.g636650 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g15356.t1,Cre15.g636650.t1.1 PF12251 - - - - - AT1G28560.2 SRD2 snRNA activating complex family protein Cre03.g164850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g3379.t1,Cre03.g164850.t1.1 - - - - - - - - - Cre03.g163800 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g3358.t1 - - - - - - - - - Cre05.g233450 ELG30 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Exostosin-like glycosyltransferase Exostosin-like glycosyltransferases g5104.t1,Cre05.g233450.t1.1,ELG30 PF03016 PTHR11062,PTHR11062:SF22 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre08.g380452 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 11 - - g8954.t1 PF00069 PTHR26263,PTHR26263:SF9 - - - GO:0004672,GO:0005524,GO:0006468 AT5G51800.1 - Protein kinase superfamily protein Cre07.g319300 GWD1 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 16 Alpha-glucan water dikinase Phosphorylates the C-3 and C-6 positions of alpha glucans with the beta phosphate of ATP g7382.t1 PF01326 PTHR22931,PTHR22931:SF1 - 2.7.9.4 K08244 GO:0005524,GO:0016301,GO:0016310 AT4G24450.1 ATGWD2,GWD3,PWD phosphoglucan, water dikinase Cre12.g495600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g12133.t1 - - - - - - - - - Cre01.g009350 AIH2 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated 2 Agmatine iminohydrolase Converts agmatin to N-carbamoyl-putrescine; involved in agmatine pathway of polyamine (putrescine) biosynthesis; found in soluble mitochondrial proteome g236.t1,Cre01.g009350.t1.1,AIH2 PF04371 - - 3.5.3.12 K10536 - AT5G08170.1 ATAIH,EMB1873 porphyromonas-type peptidyl-arginine deiminase family protein Cre02.g103300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g2110.t1 - - - - - - - - - Cre16.g653601 MRPL33 - 0 1 1.0 nan 0 1 1.0 nan - n - 5 - - g15805.t1,MRPL33 PF00471 PTHR15238 KOG3505 - - GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT5G18790.1 - Ribosomal protein L33 family protein Cre12.g492050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g12111.t1,Cre12.g492050.t1.1 PF01822 - - - - - - - - Cre02.g095150 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g1931.t1,Cre02.g095150.t1.1 - - - - - - - - - Cre02.g095151 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 16 - - g1923.t1,Cre11.g474600.t1.1,Cre11.g474600.t1.2 PF01061,PF00005 PTHR19241 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT1G59870.1 ABCG36,ATABCG36,ATPDR8,PDR8,PEN3 ABC-2 and Plant PDR ABC-type transporter family protein Cre16.g662100 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - - - g15989.t1,Cre16.g662100.t1.1 PF00013 - - - - GO:0003723 - - - Cre01.g007400 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g192.t1 - - - - - - - - - Cre01.g060712 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g1258.t1,Cre23.g767100.t1.1 PF01485 PTHR24985,PTHR24985:SF5 - - - GO:0008270 AT4G19670.1 - RING/U-box superfamily protein Cre02.g145950 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g2542.t1,Cre02.g145950.t1.1 PF01822 - - - - - - - - Cre06.g274650 NUOAF4 - 0 8 1.0 1.0 0 8 1.0 1.0 C n upregulated 5 - - g6159.t1,NUOAF4 PF08547 PTHR15020,PTHR15020:SF2 - - - - AT4G18810.2 - NAD(P)-binding Rossmann-fold superfamily protein Cre17.g739000 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 11 - - g17873.t2, g17873.t1 - - - - - - - - - Cre03.g144987 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 2 - - g2913.t1,Cre01.g058200.t1.1 PF00069 PTHR23257:SF359,PTHR23257 KOG1989 - - GO:0004672,GO:0005524,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre06.g277300 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 16 - - g6215.t1 PF00023,PF04564 PTHR24420:SF527,PTHR24420 - - - GO:0005515,GO:0000151,GO:0004842,GO:0016567 AT1G01660.1 - RING/U-box superfamily protein Cre04.g225250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g4923.t1 - - - - - - - - - Cre02.g143507 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g2835.t1,Cre38.g785500.t1.1 - - - - - - - - - Cre06.g280050 ROC86,XRN1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 9 Single-stranded RNA 5\'->3\' exonuclease Homologue of yeast Xrn1p and Rat1p, which are the cytoplasmic and the nuclear 5\'->3\' exoribonuclease. Tge nuclear Rat1p is involved in transcription termination by RNA polymerase II. Although several genes are found for 5\'->3\' exoribonuclease in other org g6513.t1,Cre06.g280050.t1.1,ROC86,XRN1 PF03159 PTHR12341,PTHR12341:SF7 KOG2045 3.1.13.- K12618 GO:0003676,GO:0004527,GO:0005622 AT1G54490.1 AIN1,ATXRN4,EIN5,XRN4 exoribonuclease 4 Cre02.g143500 PDE28 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 - - g2613.t1,PDE28 PF00233,PF03924 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre02.g146750 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 17 - - g2525.t1 - - - - - - - - - Cre08.g384600 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 4 - - g9050.t1,Cre08.g384600.t1.1 PF00561 PTHR10992,PTHR10992:SF81 KOG2382 - - - AT4G10030.1 - alpha/beta-Hydrolases superfamily protein Cre17.g723800 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g17506.t1,Cre17.g723800.t1.1 - - - - - - - - - Cre12.g514600 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g12699.t1 PF03618 - - - K09773 GO:0005524,GO:0016772 AT4G21210.1 ATRP1,RP1 PPDK regulatory protein Cre08.g365632 PPP32 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g8566.t1,PPP32 PF00481 PTHR13832 KOG0698 - - GO:0003824 AT5G10740.1 - Protein phosphatase 2C family protein Cre14.g617700 PDE2 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 15 3\',5\'-cyclic-nucleotide phosphodiesterase Phosphodiesterase similar to PDE1a from Mus musculus; part of a cluster of PDE genes with PDE1 and PDE3 g14882.t1,PDE2 PF00233,PF03924 PTHR11347:SF75,PTHR11347 - 3.1.4.17 K13755 GO:0004114,GO:0007165 - - - Cre12.g528614 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g13017.t1,Cre12.g528614.t1.1 - - - - - - - - - Cre04.g224250 FAP147 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein weakly similar to Myc-binding protein-associated protein; found in the flagellar proteome [PMID: 15998802]; identified by comparative genomics as being present only in organisms having motile cilia; gene conserved only in orga g4892.t1 - - - - - - - - - Cre08.g361700 - 0 1 1.0 nan 0 1 1.0 nan C n - 13 - - g8468.t1,Cre08.g361700.t1.1 - - - - - - - - - Cre05.g239350 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 17 - - g5521.t1 - - - - - - - - - Cre14.g623176 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 17 - - g15020.t1 - - - - - - - - - Cre14.g629150 CYG4 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 13 Adenylate/guanylate cyclase Probable domain of larger protein similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g15153.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre09.g388430 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9613.t1,Cre02.g123150.t1.1,Cre02.g123150.t1.2 PF00397 - - - - GO:0005515 AT3G13225.2 - WW domain-containing protein Cre03.g145587 CPLD1 - 0 1 1.0 nan 0 1 1.0 nan C Y upregulated 5 Putative thiol-disulphide oxidoreductase DCC Putative thiol-disulphide oxidoreductase DCC (encompasses COG3011). Significant similarity to hypothetical proteins in plants and cyanobacteria. pfam04134, DUF393, Protein of unknown function, DUF393. Members of this family have two highly conserved cyste g2944.t1,Cre01.g059550.t1.1,CPLD1 PF04134 - - - - - AT5G50100.1 - Putative thiol-disulphide oxidoreductase DCC Cre17.g708950 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 13 - - g17174.t1 PF01822 - - - - - - - - Cre02.g078316 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g1418.t1,Cre02.g078316.t1.1 - - - - - - - - - Cre09.g393839 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9765.t1 - - - - - - - - - Cre06.g275600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g6179.t1,Cre06.g275600.t1.1 - - - - - - - - - Cre09.g403850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 15 - - g9184.t1 PF00069 PTHR26266:SF106,PTHR26266 - - - GO:0004672,GO:0005524,GO:0006468 AT4G18700.1 ATWL4,CIPK12,SnRK3.9,WL4 CBL-interacting protein kinase 12 Cre12.g542750 - 0 1 1.0 nan 0 1 1.0 nan O n - 3 - - g13714.t1 - - - - - - - - - Cre06.g261500 CPLD58 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y upregulated 5 - - g5877.t1,Cre06.g261500.t1.1 PF02798,PF00462 - - - - GO:0005515,GO:0009055,GO:0015035,GO:0045454 AT5G03880.1 - Thioredoxin family protein Cre11.g474950 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n downregulated 13 - - g11800.t1 - - - - - - - - - Cre01.g031900 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g722.t1 PF03109 PTHR10566:SF23,PTHR10566 KOG1236 - K08869 - AT1G11390.1 - Protein kinase superfamily protein Cre02.g113800 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2348.t1 - - - - - - - - - Cre03.g146587 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g2994.t1,Cre01.g061950.t1.1 PF00023 - KOG4214 - - GO:0005515 AT5G60070.1 - ankyrin repeat family protein Cre11.g479850 CYN59 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID:15047905]. RNA-binding region RNP-1-RRM / RDG-rich domain; similar to At1g53720 (AtCYP59); no targeting peptide, probably nucleus located (by homology) g11911.t1,Cre11.g479850.t1.1 PF00076,PF00160 PTHR11071:SF25,PTHR11071 KOG0415 5.2.1.8 K12735 GO:0003676,GO:0003755,GO:0006457 AT1G53720.1 ATCYP59,CYP59 cyclophilin 59 Cre16.g691800 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 6 - - g15643.t1 PF00753,PF01613 PTHR11935,PTHR11935:SF27 - - - GO:0016787,GO:0010181,GO:0042602 - - - Cre04.g221200 CGL109 - 0 5 1.0 1.0 0 5 1.0 1.0 O Y - 3 - - g4828.t1 - PTHR21717 - - - - AT1G17520.1 - Homeodomain-like/winged-helix DNA-binding family protein Cre17.g738632 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g17865.t1,Cre17.g738632.t1.1 PF01342 - - - - GO:0003677,GO:0005634 - - - Cre12.g559350 SDR23 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g13337.t1,Cre12.g559350.t1.1,SDR23 PF00106 PTHR24322 KOG1209 1.1.1.101 K06123 GO:0008152,GO:0016491 AT5G65205.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre17.g730400 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g17650.t1 PF01753 PTHR13244 KOG2897 - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre10.g456000 FAP191 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Flagellar Associated Protein, quinone reductase-like Flagellar Associated Protein similar to quinone reductase; one of four highly similar, tandemly-repeated flavodoxins. Other proteins in cluster include the flagellar associated proteins FAP142/AGG3, and AGG4. Found in the flagellar proteome [PMID: 1599880 g11189.t1,Cre10.g456000.t1.1 PF03358 - KOG3135 - - - AT5G54500.1 FQR1 flavodoxin-like quinone reductase 1 Cre12.g501200 ROC80,SKP1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 E3 ubiquitin ligase, SKP1 homolog E3 ubiquitin ligase; similar to Skp1 homolog, S-phase kinase-associated protein. Matsuo et al.\'s (2008) roc80 (rhythm of chloroplast) circadian rhythm mutant locus maps here. g12552.t1,Cre12.g501200.t1.1,ROC80,SKP1 PF03931,PF01466 PTHR11165 KOG1724 - K03094 GO:0006511 AT5G42190.1 ASK2,SKP1B E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein Cre07.g331300 AGP3 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 16 - - g7708.t1,Cre07.g331300.t1.1,AGP3 PF00483 PTHR22572,PTHR22572:SF10 KOG1322 - - GO:0009058,GO:0016779 AT5G19220.1 ADG2,APL1 ADP glucose pyrophosphorylase large subunit 1 Cre10.g432550 KCN2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 15 Voltage-gated K+ channel Voltage-dependent 1-domain potassium channel (Shaker-like), alpha subunit; P-loop contains conserved motif for K+ selectivity g10673.t1,Cre10.g432550.t1.1,KCN2 PF00520 PTHR11537,PTHR11537:SF96 - - K04886 GO:0005216,GO:0006811,GO:0016020,GO:0055085 - - - Cre17.g716950 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g17356.t1 - - - - - - - - - Cre02.g119000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 13 - - g2469.t1 PF04614 PTHR12774 - - K13337 GO:0005777 AT5G17550.1 AtPEX19-2,PEX19-2 peroxin 19-2 Cre09.g397031 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - Cytochrome P450, CYP3 superfamily Cytochrome P450, CYP3 superfamily. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP744 family has best BLAST hits to CYP5 family members (thromboxane A2 synthase in an g9853.t1,Cre02.g133850.t1.1 PF00067 PTHR24301,PTHR24301:SF127 KOG0158 5.3.99.5 K01832 GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT2G26170.2 CYP711A1,MAX1 cytochrome P450, family 711, subfamily A, polypeptide 1 Cre06.g264200 SDH2 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 Iron-sulfur subunit of mitochondrial succinate dehydrogenase Iron-sulfur subunit of mitochondrial succinate dehydrogenase [ubiquinone] (complex II), precursor of iron-sulfur protein, (Ip, iron-sulfur subunit of complex II); SDHB g5936.t1,Cre06.g264200.t1.1,SDH2 - PTHR11921 KOG3049 1.3.5.1 K00235 - AT5G40650.1 SDH2-2 succinate dehydrogenase 2-2 Cre15.g638150 OPR72 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g15449.t1 PF08373 - - - - - - - - Cre13.g589400 PRL6 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n upregulated 5 Predicted extracellular protein Similar to pathogenesis-related protein 1, extracellular; similar to LSG1, a Volvox carteri PR-1 like protein [PMID: 11891059] expressed during senescence of somatic cells; probably an extracellular protein, containing SCP / Tpx-1 / Ag5 / PR-1 / Sc7 famil g14459.t1,PRL6 PF00188 PTHR10334 - - - - AT4G31470.1 - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Cre03.g207265 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g4432.t1,Cre19.g754850.t1.1,Cre19.g754850.t1.2 - - - - - - - - - Cre03.g156450 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g3193.t1,Cre03.g156450.t1.1 - - - - - - - - - Cre12.g498400 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g12617.t1 - - - - - - - - - Cre01.g009101 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 3 - - g230.t1,Cre01.g009100.t1.3 - PTHR22937:SF16,PTHR22937 - - - - AT5G43420.1 - RING/U-box superfamily protein Cre10.g461319 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g11310.t1,Cre10.g461319.t1.1 - - - - - - - - - Cre02.g076433 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1372.t1 - - - - - - - - - Cre04.g216600 RPT6 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 26S proteasome regulatory subunit 26S proteasome regulatory complex, base subcomplex, ATPase RPT6 (subunit 8) g4504.t1,Cre04.g216600.t1.1,RPT6 PF00004 PTHR23073,PTHR23073:SF12 KOG0728 - K03066 GO:0005524 AT5G19990.1 ATSUG1,RPT6A regulatory particle triple-A ATPase 6A Cre02.g099650 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g2028.t1,Cre02.g099650.t1.1 - - - - - - AT3G02420.1 - - Cre05.g230600 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5156.t1 PF00415 PTHR22870,PTHR22870:SF27 - - - - AT5G63860.1 UVR8 Regulator of chromosome condensation (RCC1) family protein Cre17.g731750 CYP740A1,CYP37 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 7 Cytochrome P450, CYP26 superfamily Cytochrome P450, CYP26 superfamily. The CYP85 clan families CYP85 and CYP90 make brassinosteroids in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols. Previously annotated as CYP740A1 g17686.t1,CYP37 PF00067 PTHR24286 KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT5G45340.2 CYP707A3 cytochrome P450, family 707, subfamily A, polypeptide 3 Cre10.g466850 FKB18 - 0 1 1.0 nan 0 1 1.0 nan O Y upregulated 11 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase); probably directed to thylakoid lumen (homology to AtFKBP18 and bipartite cTP: 29 + RR motif); present in thylakoid proteome based on mass spectrometric peptide identification g11441.t1 PF00254 - - 5.2.1.8 K01802 GO:0006457 AT1G20810.1 - FKBP-like peptidyl-prolyl cis-trans isomerase family protein Cre03.g196700 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g4074.t1 PF01679 - KOG1773 - - GO:0016021 - - - Cre12.g516450 CAG1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 Gamma carbonic anhydrase NADH:ubiquinone oxidoreductase (Complex I) subunit; putative carbonic anhydrase (gamma-type) identical to AAS48195 (mitochondrial complex I subunit) [PMID: 15450959; PMID: 15710684]. Arabidopsis homologs erroneously described as ferripyochelin-binding pro g12739.t1,Cre12.g516450.t1.1,CAG1 - PTHR13061 - - - - AT5G66510.1 GAMMA CA3 gamma carbonic anhydrase 3 Cre10.g433600 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g10696.t1,Cre10.g433600.t1.1 PF02219 PTHR21091:SF1,PTHR21091 KOG0564 1.5.1.20 K00297 GO:0004489,GO:0006555,GO:0055114 AT2G44160.1 MTHFR2 methylenetetrahydrofolate reductase 2 Cre12.g489250 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 - - g12200.t1,Cre12.g489250.t1.1 - - - - - - - - - Cre03.g165300 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 15 - - g3391.t1 - - - - - - - - - Cre10.g458950 IBA57 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g11257.t1,Cre10.g458950.t1.1,IBA57 - - - - - - - - - Cre01.g012700 KCN6 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - - - - g314.t1,Cre01.g012700.t1.1,KCN6 PF00023,PF00520,PF00027 PTHR10217:SF394,PTHR10217 KOG4412 - - GO:0005515,GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT5G37500.1 GORK gated outwardly-rectifying K+ channel Cre10.g441150 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 8 - - g10856.t1, g10856.t2 - - - - - - - - - Cre06.g267850 PLS1 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 7 Phospholipid scramblase Phospholipid scramblase. Metazoan scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs g6010.t1,Cre06.g267850.t1.1,PLS1 PF03803 PTHR23248,PTHR23248:SF2 - - - - AT2G04940.1 - scramblase-related Cre08.g385350 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 17 - - g9067.t1 PF00847 PTHR11584:SF272,PTHR11584 - - - GO:0003700,GO:0006355 AT2G39250.1 SNZ Integrase-type DNA-binding superfamily protein Cre09.g399960 - 0 12 1.0 1.0 0 12 1.0 1.0 M n - - - - g9945.t1 PF03372,PF00078 PTHR19446 - - - GO:0003723,GO:0003964,GO:0006278 - - - Cre02.g111350 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 10 - - g2290.t1,Cre02.g111350.t1.1 PF00400 PTHR22850:SF44,PTHR22850 KOG4328 - - - AT1G80710.1 DRS1 DROUGHT SENSITIVE 1 Cre02.g115850 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 12 - - g2398.t1,Cre02.g115850.t1.1 PF01987 - - - - - AT4G17420.1 - Tryptophan RNA-binding attenuator protein-like Cre13.g568400 FTSH4,FHL4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - FtsH-like ATPase/metalloprotease FtsH-like ATPase/metalloprotease. FtsH protease 4, (by homology to AtFtsH4, AT2G26140); metallopeptidase with AAA domain; probably directed to mitochondria. Previously annotated as FTSH4 g13987.t1,Cre13.g568400.t1.1,FHL4 PF01434,PF00004 PTHR23076 KOG0737 - - GO:0004222,GO:0005524,GO:0006508 AT2G26140.1 ftsh4 FTSH protease 4 Cre02.g112800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g2323.t1 PF00023 PTHR24198:SF302,PTHR24198 KOG4412 - - GO:0005515 AT2G31820.1 - Ankyrin repeat family protein Cre02.g075250 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g1346.t1, g1346.t2 - - - - - - AT2G38000.1 - chaperone protein dnaJ-related Cre06.g291500 RWP6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 18 RWP-RK transcription factor Putative RWP-RK domain transcription factor, however the domain is non-canonical in this gene (NWPsRK). The model is based on an unpublished cDNA sequence. g6755.t1,Cre06.g291500.t1.1,RWP6 PF02042 - - - - - AT4G35590.1 - RWP-RK domain-containing protein Cre06.g288050 MGTE - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 Mg2+/divalent cation transporter Related to cyanobacterial Mg/Co/Ni transporter MgtE. Previously annotatated as MGTE g6689.t2,MGTE, g6689.t1,Cre06.g288050.t1.1,MGTE PF01769 - - - - GO:0006812,GO:0008324 - - - Cre16.g696000 - 0 1 1.0 nan 0 1 1.0 nan SP n - 4 - - g15548.t1,Cre16.g696000.t1.1 - PTHR11952,PTHR11952:SF2 KOG2388 - - GO:0008152,GO:0016779 AT1G31070.2 GlcNAc1pUT1 N-acetylglucosamine-1-phosphate uridylyltransferase 1 Cre04.g228208 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g4993.t2, g4993.t1,Cre04.g228208.t1.1 PF00069 PTHR24349,PTHR24349:SF98 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre17.g746747 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g18051.t1 - - - - - - - - - Cre17.g732250 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g17696.t1 - - - - - - - - - Cre03.g205137 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated 16 - - g4412.t1,Cre19.g754000.t1.1 - - - - - - AT5G16210.1 - HEAT repeat-containing protein Cre04.g229550 - 0 20 1.0 1.0 0 20 1.0 1.0 SP n - 15 - - g5029.t1 PF06011,PF00530 PTHR19331 - - - GO:0005044,GO:0016020 - - - Cre07.g333535 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g7755.t1 PF00520 PTHR10037:SF138,PTHR10037 KOG2301 - K04856 GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G03560.1 ATCCH1,ATTPC1,FOU2,TPC1 two-pore channel 1 Cre03.g150200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g3055.t1,Cre03.g150200.t1.1 - PTHR24003,PTHR24003:SF250 - - - - - - - Cre07.g329882 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 3 - - g7677.t1 PF00520,PF00027 PTHR10217:SF393,PTHR10217 KOG3684 - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT3G02850.1 SKOR STELAR K+ outward rectifier Cre14.g621150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g14968.t1 - - - - - - - - - Cre02.g146629 - 0 1 1.0 nan 0 1 1.0 nan O n - 18 - - g2528.t1 - - - - - - AT1G26780.2 AtMYB117,LOF1,MYB117 myb domain protein 117 Cre06.g268600 NAB1 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 Nucleic acid binding protein Nucleic acid binding protein; RNA binding protein involved in the light-regulated differential expression of the light-harvesting antenna of Chlamydomonas reinhardtii [PMID: 16284312, Genbank entry AY157846]. Studied by Wobbe et al. 2009 [PMID: 19666611] g6026.t1,Cre06.g268600.t1.1,NAB1 PF00313,PF00076 PTHR23003:SF10,PTHR23003 - - - GO:0003677,GO:0006355,GO:0003676 AT2G21060.1 ATCSP4,ATGRP2B,GRP2B glycine-rich protein 2B Cre07.g348750 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 12 - - g8113.t1 PF02517 - - - - GO:0016020 AT5G60750.1 - CAAX amino terminal protease family protein Cre16.g684149 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - - - g16154.t1,Cre01.g064580.t1.1,Cre01.g064580.t1.2 - - - - - - - - - Cre14.g618621 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g14903.t1 PF00112 PTHR12411:SF144,PTHR12411 - - - GO:0006508,GO:0008234 AT3G48340.1 - Cysteine proteinases superfamily protein Cre09.g408100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g10115.t1,Cre09.g408100.t1.1 PF01753 PTHR13244 - - - GO:0008270 AT2G17900.1 SDG37 SET domain group 37 Cre07.g345700 COQ10 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - Coenzyme Q-binding protein Putative coenzyme Q-binding protein COQ10, mitochondrial precursor; similiar to COQ10_YEAST Coenzyme Q-binding protein COQ10, mitochondrial precursor (gi|74676458). Has putative polyketide synthase activity, containing a Streptomyces cyclase/hydrase moti g8044.t1,Cre07.g345700.t1.1,COQ10 PF03364 PTHR12901 - - - - AT4G17650.1 - Polyketide cyclase / dehydrase and lipid transport protein Cre01.g003050 SEC8 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Component of the Exocyst Complex Hypothetical Conserved Protein. Similar to SEC8, a subunit of the Exocyst. g72.t1,Cre01.g003050.t1.1 PF04048 - - - K06111 GO:0000145,GO:0006904,GO:0015031 AT3G10380.1 ATSEC8,SEC8 subunit of exocyst complex 8 Cre06.g290676 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g6740.t1 PF12499 PTHR23213:SF79,PTHR23213 - - - - - - - Cre09.g390957 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g9473.t1,Cre09.g390957.t1.1 - - - - - - AT1G51190.1 PLT2 Integrase-type DNA-binding superfamily protein Cre11.g468365 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g11755.t2,Cre45.g788417.t1.1,Cre45.g788417.t1.2, g11755.t1,Cre45.g788417.t2.1 - - - - - - - - - Cre13.g561800 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g13827.t1 PF00168 - - - - GO:0005515 - - - Cre16.g690767 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g16869.t1,Cre01.g072300.t1.1,Cre01.g072300.t1.2 PF01266 PTHR25485:SF11,PTHR25485 - - - GO:0016491 - - - Cre12.g556228 NDA7 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Type-II NADH dehydrogenase Putative type-II NADH dehydrogenase [PMID: 15710684]; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; disulfide oxidoreductase/ electron carrier g13821.t1,Cre27.g775750.t1.1,NDA7 PF07992,PF00070 PTHR22915,PTHR22915:SF5 KOG2495 - - GO:0016491,GO:0050660,GO:0055114 AT5G22140.1 - FAD/NAD(P)-binding oxidoreductase family protein Cre03.g177450 - 0 4 1.0 1.0 0 4 1.0 1.0 C n downregulated 13 - - g3668.t1 PF01847,PF02577 PTHR15160 - - - GO:0005634,GO:0016567 - - - Cre06.g285926 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6645.t1 - - - - - - - - - Cre09.g391319 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g9692.t1,Cre02.g126750.t1.1 PF01753 - - - - GO:0008270 - - - Cre13.g590251 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g14475.t1 PF01607 - - - - GO:0005576,GO:0006030,GO:0008061 - - - Cre18.g748997 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 Sugar nucleotide transporter-like protein, UAA transporter family UAA transporter, with a specificity for UDP-N-acetylglucosamine. Conserved, expressed membrane protein related to sugar nucleotide transporters g18096.t1,Cre46.g788700.t1.1,Cre46.g788700.t1.2 PF08449 PTHR11132 KOG1444 - - GO:0055085 AT5G19980.1 GONST4 golgi nucleotide sugar transporter 4 Cre12.g496300 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 3 - - g12659.t1 - - - - - - - - - Cre03.g184350 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g3820.t1 PF00641,PF00076 PTHR13948 KOG2985 - K13094 GO:0005622,GO:0008270,GO:0003676 AT3G54230.1 SUA suppressor of abi3-5 Cre17.g720600 CAV1 - 0 16 1.0 1.0 0 16 1.0 1.0 M n - - Voltage-gated Ca2+ channel, alpha subunit Calcium channel, 4-domain, voltage-dependent, alpha subunit; Calcium channel, 4-domain, voltage-dependent, alpha subunit g17441.t1,CAV1 PF00520 PTHR10037:SF138,PTHR10037 KOG2301 - K04834 GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G03560.1 ATCCH1,ATTPC1,FOU2,TPC1 two-pore channel 1 Cre12.g515400 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - - - - g12715.t1 PF08016 - - - - - - - - Cre07.g346750 PUS14 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g8069.t1,PUS14 PF00849 PTHR10436 - - - GO:0001522,GO:0003723,GO:0009451,GO:0009982 - - - Cre02.g141646 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g2724.t1 - - - - - - - - - Cre17.g737376 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g17837.t1 PF01822 - - - - - - - - Cre12.g541100 OTU7 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g13754.t1,Cre12.g541100.t1.1,OTU7 PF02338 PTHR12419 KOG3288 - - - AT5G04250.1 - Cysteine proteinases superfamily protein Cre19.g750447 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g18126.t1,Cre33.g782900.t1.1 PF02225 PTHR10795,PTHR10795:SF75 - - - - AT1G63690.1 ATSPPL2,SPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 Cre09.g400627 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 1 - - g9968.t1,Cre02.g138000.t1.1,Cre02.g138000.t1.2 - - - - - - AT4G01883.1 - Polyketide cyclase / dehydrase and lipid transport protein Cre16.g673600 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 15 - - g16649.t1 PF00069 PTHR24349,PTHR24349:SF107 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre16.g676350 - 0 13 1.0 1.0 0 13 1.0 1.0 M n upregulated 2 - - g16590.t1 PF00004 PTHR23073:SF19,PTHR23073 KOG0737 - - GO:0005524 AT3G56690.1 CIP111 Cam interacting protein 111 Cre12.g522250 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 15 - - g12862.t1,Cre12.g522250.t1.1 PF00350 - - - - GO:0003924,GO:0005525 - - - Cre17.g701800 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g17013.t1 - PTHR24362,PTHR24362:SF143 - - - - - - - Cre09.g404900 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g9157.t1 - - - - - - - - - Cre13.g582600 - 0 5 1.0 1.0 0 5 1.0 1.0 M n upregulated 2 - - g14301.t1,Cre13.g582600.t1.1 - - - - - - - - - Cre10.g428400 PUS7 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 4 tRNA-pseudouridine synthase RNA Pseudouridine synthase, putative, possibly targeted to the mitochondria. Also contains a motif RluA found on 23S RNA-specific pseudouridine synthase. g10579.t1,PUS7 PF00849 PTHR10436 - - - GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT3G19440.1 - Pseudouridine synthase family protein Cre03.g156200 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g3188.t3, g3188.t2, g3188.t1 PF00059 - - - - GO:0005488 - - - Cre10.g423250 MDH2,MDY2 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 NAD-dependent malate dehydrogenase NAD-dependent malate dehydrogenase [EC:1.1.1.37]; putative glyoxysomal localization; [PMID: 19214701]. Note that Genbank entry U42979 uses MDH2 but that refers to the model named MDH1 and not this model. UniProt also lists MDH1 and MDH2 as synonyms, g10469.t1,Cre10.g423250.t1.1,MDH2 PF02866,PF00056 PTHR11540:SF1,PTHR11540 KOG1494 - - GO:0006108,GO:0030060,GO:0055114,GO:0016491 AT2G22780.1 PMDH1 peroxisomal NAD-malate dehydrogenase 1 Cre08.g385100 EFH5 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g9062.t1,Cre08.g385100.t1.1,EFH5 - - - - - - - - - Cre03.g185400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g3842.t1 - - - - - - - - - Cre03.g211521 FAP165 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. Glyceraldehyde 3-phosphate dehydrogenase/adenine nucleotide alpha-hydrolase superfamily. g4472.t1,Cre19.g756550.t1.1 PF00582 - - - - GO:0006950 AT3G11930.4 - Adenine nucleotide alpha hydrolases-like superfamily protein Cre12.g544000 RSP5 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Radial spoke protein 5 A subunit in the radial spoke stalk, putative aldo/keto reductase [PMID: 16507594; GI:83284709 g13689.t1,Cre12.g544000.t1.1 PF00248 PTHR11732 - - - GO:0016491,GO:0055114 AT2G27680.1 - NAD(P)-linked oxidoreductase superfamily protein Cre16.g657650 FAP35 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g15891.t1,Cre16.g657650.t1.1 - - - - - - - - - Cre11.g477950 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 5 - - g11865.t1 - - - - - - - - - Cre08.g382650 UBQ4 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 Bi-ubiquitin Contains two ubiquitin domains in tandem g9008.t1,UBQ4 PF08172 PTHR14043:SF2,PTHR14043 KOG0963 - K09313 GO:0006891,GO:0030173 AT3G18480.1 AtCASP,CASP CCAAT-displacement protein alternatively spliced product Cre07.g333050 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated 17 - - g7747.t1,Cre07.g333050.t1.1 - - - - - - - - - Cre16.g677001 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 8 - - g16576.t1 - - - - - - - - - Cre16.g677000 HSP70E - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 7 Heat shock protein 70E HSP70E is one of 9 genes encoding HSP70-like proteins in Chlamydomonas; it is more similar to HSP110-like proteins, as is HSP70G; HSP70E is inducible by MgProto and light; PMID: 16143837, 16143841 g16575.t1,Cre16.g677000.t1.1 PF00012 PTHR19375,PTHR19375:SF14 KOG0103 - - GO:0005524 AT1G79920.1 - Heat shock protein 70 (Hsp 70) family protein Cre10.g422250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g10446.t1 - - - - - - - - - Cre09.g406416 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g10075.t1 - - - - - - - - - Cre14.g612700 DRC7,FAP50 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 13 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]. Possible serine/threonine protein kinase or adenylate kinase g14764.t1,Cre14.g612700.t1.1,FAP50 PF00560 PTHR23155,PTHR23155:SF64 KOG0617 - - GO:0005515 AT1G74150.1 - Galactose oxidase/kelch repeat superfamily protein Cre17.g714800 ISG-C3,ISG6 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 Hydroxyproline-rich cell wall protein Similar to Chlamydomonas incerta hydroxyproline-rich glycoprotein VSP-3. Putative extracellular matrix protein (cell wall protein) g17306.t1,Cre17.g714800.t1.1,ISG-C3,ISG6 - - - - - - - - - Cre17.g715176 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g17313.t1 - - - - - - - - - Cre06.g256900 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g5773.t1 - - - - - - AT4G27910.1 ATX4,SDG16 SET domain protein 16 Cre05.g237800 CYG64 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g5471.t1 PF00211 PTHR11920:SF132,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre16.g685150 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g16394.t1,Cre16.g685150.t1.1 - - - - - - - - - Cre03.g164300 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g3368.t1,Cre03.g164300.t1.1 - - - - - - - - - Cre01.g001350 ABC1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g30.t1,Cre01.g001350.t1.1,ABC1 PF00005,PF06472 PTHR11384:SF18,PTHR11384 KOG0060 - - GO:0005524,GO:0016887,GO:0006810,GO:0016020 AT1G54350.1 - ABC transporter family protein Cre03.g169550 AOX2 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - Alternative oxidase Alternative oxidase, mitochondrial precursor (see gi|9930474|gb|AAG02081.1|AF285187_1[9930474]) g3491.t1,AOX2 PF01786 - - - - GO:0005740,GO:0007585,GO:0055114 AT3G22370.1 AOX1A,ATAOX1A alternative oxidase 1A Cre16.g654300 RSP23 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 12 Radial spoke protein 23 RSP23, a spoke specific nucleotide diphosphate kinase [PMID: 16507594; PMID: 15194815; GI:42412387] g15818.t1,Cre16.g654300.t1.1 PF00612,PF00334 PTHR11349 KOG0888 2.7.4.6 K00940 GO:0005515,GO:0004550,GO:0005524,GO:0006165,GO:0006183,GO:0006228,GO:0006241 AT1G17410.1 - Nucleoside diphosphate kinase family protein Cre01.g064362 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 18 - - g1268.t1,Cre23.g766600.t1.1 PF00069 PTHR23257:SF365,PTHR23257 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre16.g654900 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 17 - - g15831.t1 PF00069 PTHR23257:SF275,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre01.g036600 EXN3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g822.t1,Cre01.g036600.t1.1,EXN3 PF00929 PTHR12801 - - - - AT5G67240.1 SDN3 small RNA degrading nuclease 3 Cre13.g584775 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g14354.t1,Cre13.g584793.t1.2 - - - - - - - - - Cre16.g688050 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g16326.t1 PF06273 PTHR13290:SF4,PTHR13290 - - - - AT3G26400.1 EIF4B1 eukaryotic translation initiation factor 4B1 Cre08.g380650 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - - - - g8958.t1 PF05686 PTHR12203 - - - - - - - Cre24.g755847 - 0 7 1.0 1.0 0 7 1.0 1.0 M n upregulated 12 - - g18265.t1 PF00753 PTHR11935,PTHR11935:SF44 - - - GO:0016787 AT4G33540.1 - metallo-beta-lactamase family protein Cre03.g181400 ADC1 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 5 Aminodeoxychorismate synthase Putative aminodeoxychorismate (ADC) synthase (EC 6.3.5.8), based on similarity to tomato ADC synthase [GenBank AAR83121; PMID: 14745019], including a fusion of both PabA & PabB. Candidate gene for the PAB1 locus. g3759.t1,ADC1 PF00117,PF00425,PF04715 PTHR11236,PTHR11236:SF7 KOG0026 2.6.1.85 K13950 GO:0009058,GO:0016833 AT2G28880.1 ADCS,emb1997 para-aminobenzoate (PABA) synthase family protein Cre12.g548800 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g13573.t1 - - - - - - - - - Cre12.g485478 - 0 1 1.0 nan 0 1 1.0 nan - n - 14 - - g12049.t1,Cre12.g485480.t1.1 - - - - - - - - - Cre12.g489750 FAP52 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG14 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400 g12190.t1,Cre12.g489750.t1.1 PF00400 PTHR13720 KOG0266 - - - AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre07.g338550 - 0 19 1.0 1.0 0 19 1.0 1.0 SP n - 16 - - g7875.t1 - PTHR19277:SF6,PTHR19277 KOG4462 - - - - - - Cre06.g292150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6768.t2, g6768.t1 - PTHR10891 KOG0027 - - - AT1G66410.1 ACAM-4,CAM4 calmodulin 4 Cre02.g146000 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g2541.t1,Cre02.g146000.t1.1 - PTHR21531 - - - - AT3G49990.1 - - Cre12.g499100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g12603.t1 PF01465 - - - - GO:0005515 - - - Cre17.g723350 SULTR2,SUL2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 6 Sulfate anion transporter Similar to Arabidopsis Sultr4;1. Previously annotated as SULTR2 g17497.t1,Cre17.g723350.t1.1,SUL2 PF01740,PF00916 PTHR11814:SF46,PTHR11814 KOG0236 - - GO:0005215,GO:0006810,GO:0016021,GO:0055085 AT3G12520.1 SULTR4;2 sulfate transporter 4;2 Cre10.g421250 EXO70 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated 9 Component of the Exocyst Complex Hypothetical Conserved Protein. Similar to Exo70, a subunit of the exocyst complex g10425.t1,Cre10.g421250.t1.1,EXO70 PF03081 PTHR12542 KOG2344 - - GO:0000145,GO:0006887 AT5G52340.1 ATEXO70A2,EXO70A2 exocyst subunit exo70 family protein A2 Cre09.g410250 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g10164.t1 - - - - - - - - - Cre08.g373200 - 0 15 1.0 1.0 0 15 1.0 1.0 O n - 16 - - g8739.t1,Cre08.g373200.t1.1 PF00989 PTHR10919:SF179,PTHR10919 - - - GO:0006355 - - - Cre08.g374250 SAG1 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 17 Plus agglutinin protein Plus agglutinin gene; sexual adhesion protein located on the flagellar surface of plus gametes [PMID: 15659633] g8818.t1 - - - - - - - - - Cre06.g304100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g7041.t1,Cre06.g304100.t1.1 PF08603,PF01213 PTHR10652 KOG2675 - - GO:0003779,GO:0007010 AT4G34490.1 ATCAP1,CAP 1,CAP1 cyclase associated protein 1 Cre16.g684600 SEC5 - 0 6 1.0 1.0 0 6 1.0 1.0 C n upregulated 13 Component of the Exocyst Complex Expressed Protein. Contains regions similar to SEC5, a component of the exocyst complex involved in secretion/exocytosis; model needs editing and more cDNA support g16406.t1,Cre16.g684600.t1.1 - PTHR13043 - - - - AT1G76850.1 SEC5A exocyst complex component sec5 Cre16.g684603 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 17 - - g16814.t1,Cre01.g069950.t1.1 - PTHR11207 - - - - - - - Cre11.g478650 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 8 - - g11883.t1,Cre11.g478650.t1.1 PF04488 - - - - - - - - Cre01.g037950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g850.t1 - - - - - - - - - Cre03.g205585 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g4417.t1,Cre19.g754200.t1.1 - - - - - - - - - Cre05.g230971 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 14 - - g5147.t1,Cre05.g230971.t1.1 - - - - - - - - - Cre03.g173165 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 1 - - g3571.t1 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 AT5G19330.1 ARIA ARM repeat protein interacting with ABF2 Cre09.g400812 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 8 - - g9973.t1,Cre02.g138250.t1.1 PF12325 - - - - - AT1G79830.1 GC5 golgin candidate 5 Cre09.g416950 MKP1 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 Dual-specificity protein phosphatase Dual-specificity protein phosphatase, may be an actin depolymerizing enzyme. Previously annotated as MKP1 g10318.t1,MKP1 PF00782 PTHR10159:SF129,PTHR10159 KOG1716 3.1.3.16,3.1.3.48 K04459 GO:0006470,GO:0008138 AT3G55270.1 ATMKP1,MKP1 mitogen-activated protein kinase phosphatase 1 Cre04.g217100 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g4519.t1 - - KOG4462 - - - - - - Cre17.g697200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g16908.t1 - - - - - - - - - Cre16.g647850 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g15681.t1 - - - - - - - - - Cre01.g000550 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g14.t1,Cre01.g000550.t1.1 PF03407 PTHR10994:SF5,PTHR10994 - - - GO:0005783 AT2G35610.1 XEG113 xyloglucanase 113 Cre11.g475550 UMM10 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 17 - - g11812.t1,Cre11.g475550.t1.1,UMM10 PF08241 PTHR10108,PTHR10108:SF53 - - - GO:0008152,GO:0008168 AT2G43940.1 ATHOL3,HOL3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre05.g241250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g5562.t1 PF00533 PTHR13561:SF21,PTHR13561 - - - GO:0005622 - - - Cre16.g681400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g16475.t1 - - - - - - - - - Cre06.g286200 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g6651.t1,Cre06.g286200.t1.1 PF00892 PTHR22911 - - - GO:0016020 - - - Cre12.g541400 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 11 - - g13746.t1,Cre12.g541400.t1.1 PF04366 - - - - - - - - Cre10.g428678 GID1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme tRNA uridine 5-carboxymethylaminomethyl modification enzyme, glucose-inhibited division protein Am oxidoreductase motifs g10587.t1,Cre69.g794150.t1.1,GID1 PF01134 PTHR11806 KOG2311 - K03495 GO:0008033,GO:0050660 AT2G13440.1 - glucose-inhibited division family A protein Cre01.g031650 CGLD12 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 17 Protein with potential galactosyl transferase activity Def transferase/ transferase, transferring glycosyl groups - pfam05637, Glyco_transf_34, galactosyl transferase GMA12/MNN10 family. This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of C. g715.t1 PF05637 - - - - GO:0016021,GO:0016758 AT4G37690.1 - Galactosyl transferase GMA12/MNN10 family protein Cre03.g153000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 15 - - g3115.t1 - - - - - - - - - Cre12.g559250 FTT1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 14-3-3 protein Fourteen-three-three (FTT) 14-3-3-like protein GF14 nu (General regulatory factor 7) [Arabidopsis thaliana]: Found in the flagellar proteome [PMID: 15998802]; PLA1 (3.1.1.4 Phospholipase A2) g13339.t1,Cre12.g559250.t1.1,FTT1 PF00244 PTHR18860 KOG0841 - K06630 GO:0019904 AT3G02520.1 GF14 NU,GRF7 general regulatory factor 7 Cre03.g158050 PPP11 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 3 - - g3235.t1,PPP11 PF00686,PF07228 PTHR12320 KOG1379 - - GO:0003824,GO:0005975 AT2G30170.1 - Protein phosphatase 2C family protein Cre03.g188800 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 2 - - g3910.t1 PF04095 PTHR11098,PTHR11098:SF2 - - - GO:0004516,GO:0005737,GO:0009435 - - - Cre12.g521500 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 18 - - g12847.t1 - - - - - - - - - Cre11.g479300 SRH20 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 7 - - g11899.t1,SRH20, g11899.t2,SRH20 PF00176,PF00271 PTHR10799,PTHR10799:SF62 - - - GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT1G05120.1 - Helicase protein with RING/U-box domain Cre04.g225050 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 2 - - g4918.t1 PF09685 - - - - - AT5G55710.1 - - Cre07.g346100 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 13 - - g8052.t1 PF04493 - - 3.1.21.7 K05982 GO:0004519,GO:0006281 AT4G31150.1 - endonuclease V family protein Cre03.g195000 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g4038.t1,Cre03.g195000.t1.1 - - - - - - - - - Cre01.g021750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g503.t1,Cre01.g021750.t1.1 PF07818 PTHR13464 KOG2959 - - - AT1G29220.1 - transcriptional regulator family protein Cre06.g310850 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g7193.t1,Cre06.g310850.t1.1 PF00005 PTHR24220,PTHR24220:SF212 - - - GO:0005524,GO:0016887 AT1G67940.1 ATNAP3,AtSTAR1,NAP3 non-intrinsic ABC protein 3 Cre03.g194350 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g4022.t1,Cre03.g194350.t1.1 - - - - - - AT4G27500.1 PPI1 proton pump interactor 1 Cre10.g462350 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n downregulated 18 - - g11334.t1 PF00069 PTHR23257,PTHR23257:SF306 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre07.g315550 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 18 - - g7301.t1 PF03969 PTHR12169 KOG2383 - - GO:0005524 AT4G28070.2 - AFG1-like ATPase family protein Cre13.g588900 EXN15,WEX - 0 5 1.0 1.0 0 5 1.0 1.0 O Y - 10 - - g14447.t1,EXN15 PF01612 PTHR13620 KOG4373 - - GO:0003676,GO:0005622,GO:0006139,GO:0008408 AT4G13870.2 ATWEX,ATWRNEXO,WEX,WRNEXO Werner syndrome-like exonuclease Cre17.g736100 CEP17 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - - - - g17806.t1,CEP17 PF00112,PF01476 PTHR12411:SF142,PTHR12411 - - - GO:0006508,GO:0008234,GO:0016998 AT1G29110.1 - Cysteine proteinases superfamily protein Cre16.g686600 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g16361.t1,Cre16.g686600.t1.1 - - - - - - AT3G13600.1 - calmodulin-binding family protein Cre03.g175750 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3630.t1,Cre03.g175750.t1.1 - PTHR12461:SF2,PTHR12461 - - - - AT3G45880.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre05.g241950 ASC2 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g5316.t1,Cre05.g241950.t1.1,ASC2 PF01459 PTHR11743:SF24,PTHR11743 KOG3126 - - GO:0005741,GO:0006820,GO:0008308,GO:0044070,GO:0055085 AT5G57490.1 ATVDAC4,VDAC4 voltage dependent anion channel 4 Cre06.g311450 - 0 14 1.0 1.0 0 14 1.0 1.0 M n - 8 - - g7205.t1 - - - - - - - - - Cre09.g389100 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g9516.t1,Cre09.g389100.t1.1 PF04178 PTHR21493:SF10,PTHR21493 KOG1743 - - GO:0016192 AT3G49420.1 - Got1/Sft2-like vescicle transport protein family Cre09.g387850 RWP13 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 RWP-RK transcription factor Putative RWP-RK domain transcription factor; model is very tentative g9547.t1,Cre09.g387850.t1.1,RWP13 PF02042 - - - - - AT1G74480.1 - RWP-RK domain-containing protein Cre13.g576700 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g14171.t1 - - - - - - - - - Cre03.g152750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 - - g3110.t1 - - - - - - AT2G46240.1 ATBAG6,BAG6 BCL-2-associated athanogene 6 Cre04.g213905 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g4701.t1, g4701.t2 PF00076 PTHR24012:SF293,PTHR24012 KOG0147 - K13091 GO:0003676 AT2G16940.1 - Splicing factor, CC1-like Cre04.g213904 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g4700.t1 PF00069 PTHR24056,PTHR24056:SF83 KOG0666 2.7.11.22 K07760 GO:0004672,GO:0005524,GO:0006468 AT5G63610.1 ATCDK8,CDKE;1,HEN3 cyclin-dependent kinase E;1 Cre06.g269000 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g6036.t1,Cre06.g269000.t1.1 PF09493 - - - - - - - - Cre10.g419500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g10384.t1,Cre10.g419500.t1.1 - - - - - - - - - Cre12.g494052 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g12069.t1 - - - - - - - - - Cre26.g756897 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g18295.t1 - - KOG0956 - - - AT1G78420.1 - RING/U-box superfamily protein Cre01.g020800 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 13 - - g483.t1,Cre01.g020800.t1.1 - - - - - - - - - Cre06.g275000 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g6167.t1 PF03083 PTHR10791 KOG1623 - - GO:0016021 AT5G62850.1 AtVEX1 Nodulin MtN3 family protein Cre12.g511050 RSP16 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 Radial spoke protein 16 A structural HSP40 (DnaJ) in the radial spoke stalk [PMID: 16507594, PMID: 15563613; GI:56404248] g12327.t1,Cre12.g511050.t1.1 PF00226,PF01556 PTHR24077,PTHR24077:SF89 KOG0712 - K09519 GO:0031072,GO:0006457,GO:0051082 AT2G20560.1 - DNAJ heat shock family protein Cre02.g103800 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 18 - - g2123.t1 - - KOG4308 - - - AT3G63130.1 ATRANGAP1,RANGAP1 RAN GTPase activating protein 1 Cre16.g649100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g15707.t1,Cre16.g649100.t1.1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G01490.1 - Protein kinase superfamily protein Cre09.g400849 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 17 - - g9974.t1,Cre02.g138300.t1.1 PF00069,PF07714 PTHR23257,PTHR23257:SF355 - - - GO:0004672,GO:0005524,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre06.g269550 COQ9 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 10 Ubiquinone biosynthesis protein Putative ubiquinone biosynthesis protein, mitochondrial precursor; similar to yeast ubiquinone biosynthesis protein COQ9(gi|74644909) g6048.t1,COQ9 PF08511 PTHR21427,PTHR21427:SF11 - - - - AT1G19140.1 - - Cre07.g314200 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g7270.t1 - - - - - - - - - Cre07.g313250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 2 - - g7251.t1,Cre07.g313250.t1.1 PF01061,PF00005 PTHR19241 KOG0061 - - GO:0016020,GO:0005524,GO:0016887 AT2G36380.1 ATPDR6,PDR6 pleiotropic drug resistance 6 Cre03.g191200 RME3 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 - - g3957.t1,Cre03.g191200.t1.1,RME3 - - - - - - AT4G20910.1 CRM2,HEN1 double-stranded RNA binding protein-related / DsRBD protein-related Cre07.g341952 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g7979.t1 - - - - - - - - - Cre07.g341950 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g7948.t1 - - - - - - - - - Cre06.g302750 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g7009.t1,Cre06.g302750.t1.1 PF00400 PTHR19877 KOG0278 - K13137 - AT1G15470.1 - Transducin/WD40 repeat-like superfamily protein Cre02.g141366 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2706.t1,Cre15.g642350.t1.1,Cre15.g642350.t1.2 - PTHR15377:SF2,PTHR15377 - - - - - - - Cre01.g013850 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g339.t1 - - - - - - - - - Cre16.g694250 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n upregulated 10 - - g15587.t1,Cre16.g694250.t1.1 - PTHR10706 - - - - - - - Cre12.g548650 BBS4 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 Bardet Biedl syndrome-4 associated protein Ortholog to Bardet Biedl Syndrome 4 gene from humans g13577.t1,BBS4 PF07719,PF00515 PTHR23083,PTHR23083:SF17 KOG1155 - - GO:0005515 AT3G04240.1 SEC Tetratricopeptide repeat (TPR)-like superfamily protein Cre12.g507500 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 14 - - g12412.t1 - PTHR10641,PTHR10641:SF40 KOG0048 - - - AT4G17785.1 MYB39 myb domain protein 39 Cre12.g489500 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 - - g12195.t1 - - - - - - - - - Cre06.g278189 - 0 1 1.0 nan 0 1 1.0 nan SP n - 9 - - g6332.t1,Cre13.g597750.t1.1,Cre13.g597750.t1.2 - - - - - - - - - Cre06.g278186 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 14 - - g6329.t1,Cre13.g597600.t1.1 PF01582 - - - - GO:0004888,GO:0007165,GO:0031224,GO:0045087 AT5G40100.1 - Disease resistance protein (TIR-NBS-LRR class) family Cre06.g278187 MOT4 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g6330.t1,Cre13.g597650.t1.1,MOT4, g6330.t2,Cre13.g597650.t2.1,MOT4 PF00569 PTHR12268:SF7,PTHR12268 - - - GO:0008270 AT5G11620.1 - SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related Cre06.g278181 - 0 1 1.0 nan 0 1 1.0 nan C n - 13 - - g6324.t1,Cre13.g597350.t1.1, g6324.t2,Cre13.g597350.t2.1 - - - - - - AT2G33710.2 - Integrase-type DNA-binding superfamily protein Cre10.g426632 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g10542.t1,Cre10.g426643.t1.2 - - - - - - - - - Cre15.g637401 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15373.t1 - - - - - - - - - Cre17.g723100 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g17492.t1,Cre17.g723100.t1.1 PF03330 - - - - - AT3G55500.1 ATEXP16,ATEXPA16,ATHEXP ALPHA 1.7,EXP16,EXPA16 expansin A16 Cre16.g652050 ZXE3 - 0 8 1.0 1.0 0 8 1.0 1.0 C n upregulated 6 - - g15771.t1,Cre16.g652050.t1.1,ZXE3 PF01494 PTHR13789,PTHR13789:SF6 KOG2614 - - GO:0004497,GO:0055114 AT2G35660.1 CTF2A FAD/NAD(P)-binding oxidoreductase family protein Cre07.g327450 DNJ34 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 18 DnaJ-like protein DnaJ-like protein, perhaps targeted to the chloroplast (contains N-terminal extension that is predicted by ChloroP to be chloroplast transit peptide); no homology with other proteins in protein database g7617.t1,Cre07.g327450.t1.1 PF00226 PTHR24077:SF69,PTHR24077 - - - GO:0031072 AT5G59610.1 - Chaperone DnaJ-domain superfamily protein Cre02.g077900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g1406.t1 - - - - - - - - - Cre03.g206000 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 12 - - g4191.t1,Cre03.g206000.t1.1 PF05773,PF01205 PTHR16301 - - - GO:0005515 - - - Cre06.g278234 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g6376.t1 PF00397 - - - - GO:0005515 - - - Cre06.g278235 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 5 - - g6377.t1,Cre13.g600100.t1.1 - - - - - - - - - Cre06.g278236 - 0 4 1.0 1.0 0 4 1.0 1.0 M Y - 7 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE/COQ5 methyltransferase family with Twin arginine translocation (Tat) signal. There may be issues with the 3\'UTR g6378.t1,Cre13.g600150.t1.1,Cre13.g600150.t1.2 PF08241 PTHR10108,PTHR10108:SF289 - - - GO:0008152,GO:0008168 AT4G29590.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre06.g278237 CPLD34 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 Protein with conserved carbohydrate/purine kinase, PfkB, conserved site Plant-lineage-and-diatoms conserved protein with conserved carbohydrate/purine kinase, PfkB, conserved site. There may be issues with the 5\' UTR g6379.t1,Cre13.g600200.t1.1,CPLD34 - - - - - - - - - Cre06.g278230 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 18 - - g6372.t2,Cre13.g599800.t2.1, g6372.t1,Cre13.g599800.t1.1,Cre13.g599800.t1.2 PF00069 PTHR24361:SF113,PTHR24361 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre06.g278231 - 0 1 1.0 nan 0 1 1.0 nan O n - 18 - - g6373.t1,Cre13.g599850.t1.1 PF00069 PTHR24361,PTHR24361:SF112 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre06.g278233 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 1 - - g6375.t1,Cre13.g600000.t1.1 - - - - - - - - - Cre06.g278239 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Serine/arginine-rich pre-mRNA splicing factor Serine/arginine rich (SR) protein factor involved in mRNA splicing; pre-mRNA splicing factor ASF/SF2; contains two RNA recognition motifs (RRM) Alternative splicing factor ASF/SF2 (RRM superfamily). Previously annotated as SRP36 but this conflicts with s g6381.t2,Cre13.g600300.t1.1, g6381.t1,Cre13.g600300.t2.1 PF00076, PF00937,PF00076 PTHR10548 KOG0105 - K12890 GO:0019013,GO:0003676, GO:0003676 AT1G09140.1 ATSRP30,ATSRP30.1,ATSRP30.2 SERINE-ARGININE PROTEIN 30 Cre11.g467610 - 0 15 1.0 1.0 0 15 1.0 1.0 O n - 10 - - g11540.t1,Cre18.g748050.t1.1 PF02841,PF02263 PTHR10751 - - - GO:0003924,GO:0005525 AT5G46070.1 - Guanylate-binding family protein Cre11.g467611 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g11541.t1,Cre18.g748000.t1.1 PF01062 - - - - - - - - Cre11.g467612 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - Ubiquinone/menaquinone biosynthesis methyltransferase UbiE/COQ5 methyltransferase family; possible arsenite methytransferase g11542.t1,Cre18.g747950.t1.1 PF08241 PTHR10108,PTHR10108:SF11 - 2.1.1.137 K07755 GO:0008152,GO:0008168 AT1G23360.1 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre11.g467613 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 13 - - g11543.t1,Cre18.g747906.t1.1,Cre18.g747906.t1.2 - - - - - - - - - Cre11.g467614 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g11544.t1,Cre18.g747900.t1.1 PF07645 - - - - - - - - Cre11.g467616 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g11546.t1,Cre18.g747800.t1.1,Cre18.g747800.t1.2 - PTHR14781 KOG3785 - - - - - - Cre02.g076050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g1364.t1,Cre02.g076050.t1.1 PF00168 - - - - GO:0005515 AT1G63220.1 - Calcium-dependent lipid-binding (CaLB domain) family protein Cre16.g659750 CEP15 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g15937.t1,CEP15 PF00112 PTHR12411:SF14,PTHR12411 - - - GO:0006508,GO:0008234 AT4G01610.1 - Cysteine proteinases superfamily protein Cre12.g546950 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g13615.t1 - - - - - - - - - Cre13.g603350 CYG56 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 Adenylate/guanylate cyclase Adenylate/guanylate cyclase similar to CYG34 g14548.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre01.g053100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g1173.t1 - - - - - - - - - Cre06.g294000 CGL113 - 0 4 1.0 1.0 0 4 1.0 1.0 O Y upregulated 4 - - g6807.t1 PF01738 PTHR17630,PTHR17630:SF23 KOG3043 3.1.1.45 K01061 GO:0016787 AT2G32520.1 - alpha/beta-Hydrolases superfamily protein Cre16.g679893 - 0 1 1.0 nan 0 1 1.0 nan SP n - 17 - - g16772.t1,Cre01.g068000.t1.1 PF00069 PTHR23257:SF308,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G58640.1 - Mitogen activated protein kinase kinase kinase-related Cre03.g197450 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 16 - - g4089.t1 - - - - - - - - - Cre06.g277400 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g6217.t1 - - - - - - - - - Cre02.g143200 TSA1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 2 - - g2621.t1,TSA1 PF02272,PF01411,PF07973 PTHR11777 KOG0188 6.1.1.7 K01872 GO:0003676,GO:0000166,GO:0004813,GO:0005524,GO:0005737,GO:0006412,GO:0006419,GO:0016876,GO:0043039 AT1G50200.1 ACD,ALATS Alanyl-tRNA synthetase Cre17.g732900 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g17710.t1 PF00817 PTHR11076 - - - GO:0003684,GO:0003887,GO:0006281 AT5G44740.2 POLH Y-family DNA polymerase H Cre14.g622850 RAD51A,RAD51 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 DNA recombination protein Homologous to RecA and eukaryotic Rad51. Previously annotated as RAD51; homolog of human Rad51A protein [PMID: 17992532] g15011.t1,RAD51,RAD51A PF08423 PTHR22942,PTHR22942:SF12 KOG1434 - K04482 - AT5G20850.1 ATRAD51,RAD51 RAS associated with diabetes protein 51 Cre12.g528450 ASO1 - 0 5 1.0 1.0 0 5 1.0 1.0 C n upregulated 5 L-aspartate oxidase L-aspartate oxidase (EC 1.4.3.16); similarity to rice L-aspartate oxidase (GenBank XP_464033); Target-P predicts organelle targeting sequence. Lin et al. (2010) demonstrated that this corresponds to the nic15 mutation [PMID: 20838591]. g13013.t1,Cre12.g528450.t1.1,ASO1 PF02910,PF00890 PTHR11632:SF6,PTHR11632 KOG2403 1.4.3.16 K00278 GO:0016491,GO:0055114,GO:0009055 AT5G14760.1 AO L-aspartate oxidase Cre15.g636750 GST11 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 6 - - g15358.t1,Cre15.g636750.t1.1,GST11 PF02798,PF00043 PTHR11260 KOG0867 2.5.1.18 K00799 GO:0005515 AT2G02930.1 ATGSTF3,GST16,GSTF3 glutathione S-transferase F3 Cre09.g413200 STPK22,STK22 - 0 7 1.0 1.0 0 7 1.0 1.0 O n downregulated 18 Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK22 g10235.t1,STK22,STPK22, g10235.t2,STK22,STPK22 PF00069 PTHR24055:SF171,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT1G03740.1 - Protein kinase superfamily protein Cre12.g529500 RRM11 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g13037.t1,Cre12.g529500.t1.1,RRM11 PF01728,PF07780,PF11861 PTHR10920,PTHR10920:SF13 KOG1098 2.1.1.- K00599 GO:0003676,GO:0008168,GO:0032259,GO:0001510,GO:0005634,GO:0006364 AT4G25730.1 - FtsJ-like methyltransferase family protein Cre12.g524100 CBP80,ABH1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 mRNA cap-binding protein Best chlamy 3.0 hit for the possible human CBP80 ortholog: Large subunit of the nuclear mRNA cap-binding protein complex, interacts with Npl3p to carry nuclear poly(A)+ mRNA to cytoplasm also involved in nuclear mRNA degradation and telomere maintenance; g12905.t1,Cre12.g524100.t1.1,ABH1,CBP80 PF09088,PF09090 PTHR12412:SF9,PTHR12412 KOG1104 - K12882 GO:0016070 AT2G13540.1 ABH1,ATCBP80,CBP80,ENS ARM repeat superfamily protein Cre10.g450500 - 0 1 1.0 nan 0 1 1.0 nan C n - 5 - - g11071.t1 PF00686 - - - - GO:0003824,GO:0005975 AT5G26570.1 ATGWD3,OK1,PWD catalytics;carbohydrate kinases;phosphoglucan, water dikinases Cre06.g301476 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g6975.t1 - - - - - - - - - Cre17.g724650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g17525.t1,Cre17.g724650.t1.1 PF01494 PTHR13789,PTHR13789:SF64 - - - GO:0004497,GO:0055114 - - - Cre12.g506750 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 8 - - g12434.t1 PF12499 - - - - - - - - Cre12.g503500 GLG1 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g12500.t1,GLG1 PF00839 PTHR11884 - - - GO:0016020 - - - Cre02.g094900 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g1795.t1 PF00515 PTHR23083,PTHR23083:SF20 KOG0550 - - GO:0005515 AT4G37460.1 SRFR1 Tetratricopeptide repeat (TPR)-like superfamily protein Cre17.g728100 - 0 1 1.0 nan 0 1 1.0 nan SP n - 5 - - g17600.t1,Cre17.g728100.t1.1 PF07687,PF01546 PTHR11014:SF41,PTHR11014 - 3.5.1.- K14664 GO:0016787,GO:0008152 AT3G02875.1 ILR1 Peptidase M20/M25/M40 family protein Cre09.g403600 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g9190.t1 - - - - - - - - - Cre09.g394100 AP1S1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 Sigma1-Adaptin Expressed protein. Sigma1-Adaptin, clathrin adaptor complex subunit, putative member of AP-1 complex g9406.t1,Cre09.g394100.t1.1,AP1S1 PF01217 PTHR11753 KOG0934 - - GO:0008565,GO:0015031 AT2G17380.1 AP19 associated protein 19 Cre09.g394102 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g9773.t1,Cre02.g130200.t1.1,Cre02.g130200.t1.2 PF00106,PF00625 PTHR24319:SF42,PTHR24319 KOG0707 2.7.4.8 K00942 GO:0008152,GO:0016491,GO:0005515 AT3G57550.2 AGK2,GK-2 guanylate kinase Cre01.g003524 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g86.t1 PF00069 PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT5G12180.1 CPK17 calcium-dependent protein kinase 17 Cre12.g501900 FFT2 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 7 - - g12535.t1,Cre12.g501900.t1.1,FFT2 PF00251 - KOG0487 - - - AT1G55120.1 AtcwINV3,ATFRUCT5,FRUCT5 beta-fructofuranosidase 5 Cre07.g323400 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g7471.t1,Cre07.g323400.t1.1 - - - - - - - - - Cre09.g391550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g9461.t1,Cre09.g391550.t1.1 - - - - - - - - - Cre10.g463600 TGL17 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g11361.t1,Cre10.g463600.t1.1,TGL17 PF01764 PTHR21493,PTHR21493:SF18 - - - GO:0004806,GO:0006629 AT4G16070.1 - Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 Cre06.g281000 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 12 - - g6535.t1 PF00856 PTHR13271 - - - GO:0005515 AT2G18850.1 - SET domain-containing protein Cre12.g487101 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g12248.t1 - - - - - - - - - Cre06.g276759 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g6204.t2,Cre06.g276759.t1.1, g6204.t1 - - - - - - - - - Cre02.g115450 CYG47 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 2 Adenylate/guanylate cyclase Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g2386.t1 PF00211 PTHR11920:SF141,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre02.g090950 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 15 - - g1700.t1 - PTHR13317:SF6,PTHR13317 - - - - - - - Cre03.g146467 TRS31 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Component of TRAPP complex Expressed Protein. Conserved protein similar to TRS31, a component of the TRAPP complex involved in ER to Golgi vesicle transport. g2988.t1,Cre01.g061650.t1.1,Cre01.g061650.t1.2,TRS31 PF04051 PTHR20902 KOG3315 - - - AT5G58030.1 - Transport protein particle (TRAPP) component Cre03.g204577 DNJ31 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - DnaJ-like protein DnaJ-like protein, perhaps targeted to the chloroplast (contains N-terminal extension that is predicted by ChloroP to be chloroplast transit peptide); contains N-terminal J-domain (pfam00226); weak homology with Synechococcus Q2JXW1 g4407.t1,Cre19.g753750.t1.1,Cre19.g753750.t1.2,DNJ31 PF00226 PTHR24077,PTHR24077:SF89 - - - GO:0031072 AT1G74250.1 - DNAJ heat shock N-terminal domain-containing protein Cre13.g602901 CNX2 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 9 - - g14540.t1,Cre13.g602900.t1.2,CNX2 PF04055,PF06463 PTHR22960 KOG2876 - K03639 GO:0003824,GO:0051536,GO:0006777,GO:0019008,GO:0051539 AT2G31955.1 CNX2 cofactor of nitrate reductase and xanthine dehydrogenase 2 Cre13.g586050 - 0 13 1.0 1.0 0 13 1.0 1.0 C n upregulated 5 - - g14382.t1 PF01436 PTHR24104:SF9,PTHR24104 - - - GO:0005515 AT1G56500.1 - haloacid dehalogenase-like hydrolase family protein Cre12.g487700 - 0 1 1.0 nan 0 1 1.0 nan SP n - 3 - - g12233.t1,Cre12.g487700.t1.1 - - - - - - - - - Cre04.g214900 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g4673.t1 - - - - - - - - - Cre06.g298800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 6 - - g6911.t1, g6911.t2, g6911.t3 - - - - - - - - - Cre01.g012126 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 15 - - g300.t1,Cre01.g012126.t1.1, g300.t2 PF00884 PTHR10342:SF2,PTHR10342 - - - GO:0008152,GO:0008484 - - - Cre12.g543477 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g13791.t1 - - - - - - - - - Cre04.g221500 SMM13 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 3 - - g4834.t1,SMM13 - - - - - - AT5G27400.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre13.g590500 DES6,FAD6 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Omega-6-fatty acid desaturase, chloroplast isoform Omega-6-FAD, chloroplast isoform [PMID: 9498569]. Also known as DES6 g14481.t1,DES6 PF00487 PTHR19353 - 1.14.19.- K10255 GO:0006629,GO:0016491,GO:0055114 AT4G30950.1 FAD6,FADC,SFD4 fatty acid desaturase 6 Cre17.g727300 NFO2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g17583.t1,Cre17.g727300.t1.1,NFO2 PF00724 PTHR22893:SF16,PTHR22893 KOG0134 - - GO:0010181,GO:0016491 AT1G76680.1 ATOPR1,OPR1 12-oxophytodienoate reductase 1 Cre08.g374750 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g8828.t1 - - - - - - - - - Cre14.g625850 MMP32 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 11 - - g15075.t1,MMP32 PF05548 - - - - - - - - Cre15.g641150 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 11 - - g15457.t1 - - - - - - - - - Cre08.g379700 PHM1 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g8939.t1,Cre08.g379700.t1.1,PHM1 PF02878,PF02879,PF00408 PTHR22573:SF3,PTHR22573 KOG2537 5.4.2.3 K01836 GO:0005975,GO:0016868 AT5G18070.1 DRT101 phosphoglucosamine mutase-related Cre14.g630859 HID1 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 - - g15198.t1,HID1 PF03446 PTHR22981 KOG0409 1.1.1.31 K00020 GO:0016491,GO:0004616,GO:0006098,GO:0055114 AT4G20930.1 - 6-phosphogluconate dehydrogenase family protein Cre09.g402950 CGL21 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 4 Predicted protein Conserved protein of unknown function g9203.t1 - - - - - - AT5G08540.1 - - Cre03.g167200 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g3432.t1 - - - - - - - - - Cre09.g386732 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g9114.t1,Cre29.g778050.t1.1 PF00534 PTHR12526,PTHR12526:SF26 - - - GO:0009058 AT3G10630.1 - UDP-Glycosyltransferase superfamily protein Cre09.g386735 DLA1 - 0 1 1.0 nan 0 1 1.0 nan M n - - Dihydrolipoamide acetyltransferase Dihydrolipoamide acetyltransferase, probably mitochondrial; EC 2.3.1.12); E2 component of pyruvate dehydrogenase complex g9117.t1,Cre29.g778200.t1.1,Cre29.g778200.t1.2,DLA1 PF00364,PF00198,PF02817 PTHR23151 KOG0557 2.3.1.12 K00627 GO:0008152,GO:0008415 AT1G54220.1 - Dihydrolipoamide acetyltransferase, long form protein Cre09.g386736 FAP44 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome, upregulated by deflagellation [PMID: 15998802]; identified in the flagellar basal body proteome as FBB3 [PMID: 15137946] g9118.t1,Cre29.g778250.t1.1 PF00400 PTHR13720 - - - - AT1G15440.2 ATPWP2,PWP2 periodic tryptophan protein 2 Cre09.g386738 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g9120.t1 - - - - - - - - - Cre09.g387467 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g9587.t1,Cre02.g121900.t1.1,Cre02.g121900.t1.2 - - - - - - - - - Cre17.g717100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 18 - - g17359.t2, g17359.t1,Cre17.g717100.t1.1 PF07714 PTHR23257 KOG0198 - - GO:0004672,GO:0006468 AT4G35780.1 - ACT-like protein tyrosine kinase family protein Cre12.g537671 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13222.t1,Cre65.g793250.t1.1,Cre65.g793250.t1.2 PF07496,PF00271,PF00855,PF00385,PF00176 PTHR10799,PTHR10799:SF92 KOG0383 - - GO:0008270,GO:0003676,GO:0004386,GO:0005524,GO:0003677 AT5G44800.1 CHR4,PKR1 chromatin remodeling 4 Cre06.g278750 UCP1 - 0 1 1.0 nan 0 1 1.0 nan M n - - Uncoupling protein Uncoupling protein, probably mitochondrial g6482.t1,Cre06.g278750.t1.1 PF00153 PTHR24089:SF28,PTHR24089 KOG0753 - - - AT3G54110.1 ATPUMP1,ATUCP1,PUMP1,UCP,UCP1 plant uncoupling mitochondrial protein 1 Cre09.g404650 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g9164.t1,Cre09.g404650.t1.1 PF08700 PTHR15954 KOG2346 - - - AT4G02030.1 - Vps51/Vps67 family (components of vesicular transport) protein Cre13.g562150 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 3 - - g13835.t1,Cre13.g562150.t1.1 PF06071,PF01926 PTHR23305,PTHR23305:SF5 KOG1491 - K06942 GO:0005525,GO:0005622 AT1G56050.1 - GTP-binding protein-related Cre12.g551000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g13525.t1,Cre12.g551000.t1.1 - - - - - - AT3G28670.1 - oxidoreductase, zinc-binding dehydrogenase family protein Cre12.g540927 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g13785.t1 PF00493 PTHR11630,PTHR11630:SF48 - - - GO:0003677,GO:0005524,GO:0006260 AT2G14050.1 MCM9 minichromosome maintenance 9 Cre06.g275250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g6172.t1,Cre06.g275250.t1.1 - - - - - - - - - Cre10.g466950 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 14 - - g11443.t2, g11443.t1 - - - - - - - - - Cre12.g520900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g12834.t1,Cre12.g520900.t1.1 - - - - - - - - - Cre10.g432450 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g10671.t1 - - - - - - - - - Cre08.g372100 HSP70A - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 Heat shock protein 70A HSP70A is one of 9 genes encoding HSP70-like proteins in Chlamydomonas; HSP70A is localized to the cytosol and to flagella; it is inducible by heat shock and light [PMID: 2779571, 1541398, 16151252, 16143837]. Found in the flagellar proteome [PMID: 159988 g8716.t1,Cre08.g372100.t1.1 PF00012 PTHR19375 KOG0100 - K03283 GO:0005524 AT1G16030.1 Hsp70b heat shock protein 70B Cre10.g445850 MAE14 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g10969.t1,MAE14 PF01554 PTHR11206:SF42,PTHR11206 KOG1347 - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT1G73700.1 - MATE efflux family protein Cre17.g716850 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 17 - - g17354.t1 - PTHR23327 - - - - AT1G18660.4 - zinc finger (C3HC4-type RING finger) family protein Cre12.g512550 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g12295.t1,Cre12.g512550.t1.1 PF03966 PTHR12773 KOG1088 - - - AT1G78190.1 - Trm112p-like protein Cre02.g078831 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g1432.t1,Cre64.g793150.t1.1 PF00313 - - - - GO:0003677,GO:0006355 - - - Cre05.g243802 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 15 - - g5262.t1 PF07173 - - - - - AT4G37900.1 - Protein of unknown function (duplicated DUF1399) Cre05.g243803 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g5264.t1 - - - - - - - - - Cre05.g243801 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 13 - - g5261.t1, g5261.t3, g5261.t2 - - - - - - AT5G09520.1 - hydroxyproline-rich glycoprotein family protein Cre10.g458850 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g11255.t1,Cre10.g458850.t1.1 - - - - - - - - - Cre12.g539100 HEL57 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 2 - - g13254.t1,HEL57 PF00271,PF00270 PTHR24031,PTHR24031:SF125 KOG0331 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G31970.1 STRS1 DEA(D/H)-box RNA helicase family protein Cre12.g536100 FAP126 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG16 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400] g13184.t1,Cre12.g536100.t1.1 - - - - - - - - - Cre03.g194750 - 0 1 1.0 nan 0 1 1.0 nan - n - 12 - - g4033.t1 - - - - - - - - - Cre07.g339150 CPN60B2 - 0 1 1.0 nan 0 1 1.0 nan C n - 3 Chaperonin 60B2 GroEL/HSP60-homolog, targeted to the chloroplast; called Cpn60-beta in higher plants; shares only ~50% similarity with chloroplast-targeted CPN60A, but 79% identity with CPN60B1; higher plant Cpn60-betas may form homo- or heterooligomeric stacks (with Cpn g7889.t1,CPN60B2 PF00118 PTHR11353:SF8,PTHR11353 KOG0356 - - GO:0005524,GO:0044267 AT3G13470.1 - TCP-1/cpn60 chaperonin family protein Cre10.g446500 CPO1 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g10985.t1,CPO1 PF07534 - - - - - AT1G32520.1 - - Cre09.g392766 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g9733.t4,Cre02.g128600.t1.1,Cre02.g128600.t1.2, g9733.t2,Cre02.g128600.t3.1, g9733.t3,Cre02.g128600.t4.1, g9733.t1,Cre02.g128600.t2.1 PF00069 PTHR11795:SF313,PTHR11795 - - - GO:0004672,GO:0005524,GO:0006468 AT2G40580.1 - Protein kinase superfamily protein Cre13.g573700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g14104.t1,Cre13.g573700.t1.1 PF03407 - - - - - AT5G44820.1 - Nucleotide-diphospho-sugar transferase family protein Cre07.g356500 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g8288.t1 PF00211 PTHR24790,PTHR24790:SF7 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre01.g008950 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 11 - - g225.t1,Cre01.g008950.t1.1, g225.t2 - - - - - - - - - Cre07.g355550 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g8268.t1 PF00892 PTHR22911 KOG4510 - - GO:0016020 AT2G05755.1 - Nodulin MtN21 /EamA-like transporter family protein Cre10.g422050 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 - - g10442.t1,Cre10.g422050.t1.1 PF00097 PTHR22765 KOG1493 - - - AT3G19950.1 - RING/U-box superfamily protein Cre15.g643550 PDX1 - 0 1 1.0 nan 0 1 1.0 nan O n - 3 Pyridoxin biosynthesis protein Pyridoxin (vitamin B6) biosynthesis protein g15513.t1,Cre15.g643550.t1.1,PDX1 PF01680 PTHR22854:SF9,PTHR22854 KOG1606 4.-.-.- K06215 GO:0042823 AT5G01410.1 ATPDX1,ATPDX1.3,PDX1,PDX1.3,RSR4 Aldolase-type TIM barrel family protein Cre01.g026950 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 15 - - g617.t1,Cre01.g026950.t1.1 - - - - - - - - - Cre16.g687850 PTK22 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g16331.t1,PTK22 - PTHR23257:SF287,PTHR23257 - - - - AT1G80570.2 - RNI-like superfamily protein Cre07.g337000 CSD3 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g7841.t1,Cre07.g337000.t1.1,CSD3 PF00266 PTHR11601:SF8,PTHR11601 - - - GO:0008152 AT3G62130.1 - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Cre07.g313750 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g7261.t1 - - - - - - - - - Cre16.g661850 - 0 1 1.0 nan 0 1 1.0 nan SP n - 6 - - g15982.t1 PF08332 - - - - GO:0004683,GO:0005516,GO:0006468 - - - Cre10.g460650 CYN52 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 9 Peptidyl-prolyl cis-trans isomerase, cyclophilin type Peptidyl-prolyl cis-trans isomerase (rotamase) with two cyclophilin domains [PMID: 15051864, PMID:15047905]; 2 cyclophilin domains in tandem; most similar to cytosolic and nuclear isoforms, but contains N-terminal extension that could direct it to secreto g11293.t1,Cre10.g460650.t1.1 PF00160 PTHR11071,PTHR11071:SF100 KOG0879 - - GO:0003755,GO:0006457 AT3G63400.2 - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Cre01.g069472 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g1284.t1,Cre23.g766000.t1.1 PF01406 PTHR10890 KOG2007 6.1.1.16 K01883 GO:0000166,GO:0004817,GO:0005524,GO:0005737,GO:0006412,GO:0006423 AT2G31170.1 SYCO ARATH Cysteinyl-tRNA synthetase, class Ia family protein Cre17.g721950 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g17466.t1,Cre17.g721950.t1.1 PF00097,PF01485 PTHR11685,PTHR11685:SF12 KOG1815 - K11968 GO:0008270 AT4G34370.1 ARI1,ATARI1 RING/U-box superfamily protein Cre03.g151050 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g3074.t1 PF00651 PTHR24413 - - - GO:0005515 AT1G01640.1 - BTB/POZ domain-containing protein Cre10.g423900 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10483.t1,Cre10.g423900.t1.1 - - - - - - - - - Cre11.g482001 FAP208 - 0 5 1.0 1.0 0 5 1.0 1.0 M Y - 14 - - g11967.t1 PF00023 PTHR24198:SF303,PTHR24198 KOG4412 - - GO:0005515 AT3G04710.1 - ankyrin repeat family protein Cre07.g338200 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g7868.t1,Cre07.g338200.t1.1 PF00560 PTHR10588 KOG1644 - - GO:0005515 AT5G19680.1 - Leucine-rich repeat (LRR) family protein Cre02.g143547 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g2837.t1,Cre38.g785550.t1.1 PF00789,PF09409 PTHR23153,PTHR23153:SF14 - - - GO:0005515 AT2G01650.1 PUX2 plant UBX domain-containing protein 2 Cre01.g048701 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g1081.t1 - - KOG2761 - - - AT1G64720.1 CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein Cre10.g421500 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g10430.t1 - - - - - - - - - Cre09.g394350 NUP155 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 Nuclear pore protein Similar to nuclear pore protein NUP155 g9402.t1,Cre09.g394350.t1.1 PF03177,PF08801 PTHR10350 - - K14312 GO:0005643,GO:0006913,GO:0017056 AT1G14850.1 NUP155 nucleoporin 155 Cre01.g004926 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g119.t1 - - - - - - - - - Cre02.g104900 FAP204 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Flagellar Associated Protein Flagellar Associated Protein similar to GTP-binding protein; found in the flagellar proteome [PMID: 15998802] g2148.t1,Cre02.g104900.t1.1 PF06071,PF01926 PTHR23305,PTHR23305:SF3 KOG1491 - K06942 GO:0005525,GO:0005622 AT1G30580.1 - GTP binding Cre04.g212400 UBC15 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g4731.t1,UBC15 PF00641 - - - - GO:0005622,GO:0008270 - - - Cre13.g580900 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 1 - - g14268.t1 PF01163 PTHR10593:SF5,PTHR10593 KOG2270 2.7.11.1 K07178 GO:0003824,GO:0005524 AT2G24990.1 - Serine/threonine-protein kinase Rio1 Cre07.g337914 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g7861.t1,Cre07.g337914.t1.1 - - - - - - - - - Cre03.g150900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3071.t1,Cre03.g150900.t1.1 - - - - - - - - - Cre02.g085850 ARS6 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 Arylsulfatase - g1589.t1,ARS6 PF00884 PTHR10342:SF2,PTHR10342 KOG3867 - - GO:0008152,GO:0008484 - - - Cre05.g240050 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g5536.t1 - - - - - - - - - Cre05.g247000 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5192.t1,Cre05.g247000.t1.1 PF00628,PF00439,PF02791 PTHR22880:SF31,PTHR22880 - - - GO:0005515 AT5G12400.1 - DNA binding;zinc ion binding;DNA binding Cre06.g281766 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 10 - - g6554.t2, g6554.t1 PF00226 - - - - GO:0031072 AT5G22080.1 - Chaperone DnaJ-domain superfamily protein Cre12.g551250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 - - g13520.t1,Cre12.g551250.t1.1 PF00069 PTHR24055:SF90,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT5G63370.1 - Protein kinase superfamily protein Cre14.g631300 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - - - g15215.t1,Cre14.g631300.t1.1 PF01822 - - - - - - - - Cre02.g089608 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 - - g1673.t1,Cre02.g089608.t1.1 PF06733 PTHR11472:SF4,PTHR11472 KOG1132 - K11136 GO:0003677,GO:0004003,GO:0005524 AT1G79950.1 - RAD3-like DNA-binding helicase protein Cre11.g468750 CPLD48 - 0 1 1.0 nan 0 1 1.0 nan C Y - 6 Predicted protein Conserved expressed protein of unknown function (DUF1499). This family consists of several hypothetical bacterial and plant proteins of around 125 residues in length. g11769.t1,Cre11.g468750.t1.1 PF07386 - - - - - AT3G60810.1 - - Cre02.g089600 RAD3 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g1672.t1,RAD3 - - - - - - - - - Cre08.g364100 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 11 - - g8526.t1,Cre08.g364100.t1.1 - - - - - - - - - Cre13.g605550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g14605.t1 - - - - - - - - - Cre07.g354750 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g8252.t1,Cre07.g354750.t1.1 - - - - - - - - - Cre13.g567300 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g13959.t1 PF02775,PF02776 PTHR18968:SF89,PTHR18968 - - - GO:0003824,GO:0030976 AT3G48560.1 AHAS,ALS,CSR1,IMR1,TZP5 chlorsulfuron/imidazolinone resistant 1 Cre17.g699150 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g16957.t1,Cre17.g699150.t1.1 - - - - - - - - - Cre09.g386476 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g9105.t1 - - - - - - - - - Cre02.g080000 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g1461.t1,Cre02.g080000.t1.1 - - - - - - - - - Cre01.g033450 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 11 - - g755.t1,Cre01.g033450.t1.1 - - - - - - - - - Cre03.g146327 - 0 1 1.0 nan 0 1 1.0 nan SP n - 9 - - g2981.t1,Cre01.g061300.t1.1 - - - - - - - - - Cre03.g184250 CAM9 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 12 - - g3818.t1,Cre03.g184250.t1.1,CAM9 PF00036 PTHR10827 - - - - - - - Cre16.g690130 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g16199.t1,Cre16.g690130.t1.1 - - - - - - - - - Cre03.g179400 MFT17 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 9 - - g3713.t1,Cre03.g179400.t1.1,MFT17 PF07690 PTHR16172,PTHR16172:SF2 - - - GO:0016021,GO:0055085 - - - Cre02.g100100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g2038.t1 PF00847 - - - - GO:0003700,GO:0006355 AT5G57390.1 AIL5,CHO1,EMK AINTEGUMENTA-like 5 Cre02.g079500 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g1452.t1 - PTHR24420 - - - - - - - Cre17.g696350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 - - g16891.t1,Cre17.g696350.t1.1 PF05197 PTHR12454,PTHR12454:SF7 KOG3944 - - GO:0005261,GO:0015672,GO:0016020 - - - Cre04.g220150 - 0 10 1.0 1.0 0 10 1.0 1.0 M n - - - - g4802.t1,Cre04.g220150.t1.1 - - - - - - - - - Cre16.g656800 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 15 - - g15874.t1,Cre16.g656800.t1.1 PF03031 - - - - GO:0005515 - - - Cre01.g030900 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 4 - - g699.t1 PF00501 PTHR24095:SF47,PTHR24095 - - - GO:0003824,GO:0008152 AT1G30520.1 AAE14 acyl-activating enzyme 14 Cre03.g159700 - 0 1 1.0 nan 0 1 1.0 nan M n - 18 - - g3270.t1 PF04750 - - - - GO:0016021 AT5G62960.1 - - Cre06.g311650 IRK1 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - Inwardly-rectifying potassium channel Putative inward rectifier K+ channel TC# 1.A.2 g7209.t1,IRK1 PF01007 PTHR11767:SF35,PTHR11767 KOG3827 - K05005 GO:0005242,GO:0006813,GO:0016020 - - - Cre03.g193350 DSP7 - 0 1 1.0 nan 0 1 1.0 nan O n - - Dual-specificity protein phosphatase Dual-specificity protein phosphatase. Mitogen-Activated Protein (MAP) kinase phosphatase-1,2-related g4000.t1,DSP7 PF00782 PTHR10159:SF19,PTHR10159 KOG1716 - - GO:0006470,GO:0008138 AT2G04550.1 DSPTP1E,IBR5 indole-3-butyric acid response 5 Cre08.g373421 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g8798.t2, g8798.t1 - - - - - - - - - Cre01.g040801 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g914.t1,Cre01.g040800.t1.3 - - - - - - - - - Cre03.g149950 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g3050.t1 - - - - - - - - - Cre06.g303572 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7030.t1,Cre06.g303572.t1.1 - - - - - - - - - Cre14.g611350 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 - - g14736.t1 - - - - - - - - - Cre12.g533351 CLPB5 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 2 - - g13120.t1 PF00004,PF07724,PF10431 PTHR11638:SF18,PTHR11638 - - - GO:0005524 AT1G74310.1 ATHSP101,HOT1,HSP101 heat shock protein 101 Cre16.g677702 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 18 - - g16319.t1 - - - - - - - - - Cre14.g619166 CSK6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g14921.t1,CSK6 PF00069 PTHR24054,PTHR24054:SF37 KOG0668 - - GO:0004672,GO:0005524,GO:0006468 AT2G23070.1 - Protein kinase superfamily protein Cre08.g369683 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8662.t1 - PTHR24223,PTHR24223:SF198 - - - - AT1G30420.1 ATMRP12,MRP12 multidrug resistance-associated protein 12 Cre17.g698683 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 6 - - g16946.t1,Cre17.g698683.t1.1 - - - - - - - - - Cre02.g085650 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g1585.t1 PF01026 PTHR10060 KOG3020 3.1.21.- K03424 GO:0016888 AT3G52390.1 - TatD related DNase Cre06.g256000 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g5753.t1,Cre06.g256000.t1.1 - - KOG3263 - - - AT1G70620.1 - cyclin-related Cre08.g362500 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 - - g8489.t1,Cre08.g362500.t1.1 - - - - - - AT5G37630.1 EMB2656 ARM repeat superfamily protein Cre14.g614450 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 - - g14805.t1 - - - - - - - - - Cre02.g114850 - 0 1 1.0 nan 0 1 1.0 nan M n - 2 - - g2373.t1,Cre02.g114850.t1.1 PF01425,PF00515 PTHR22904 KOG1308 - - GO:0016884,GO:0005515 AT5G09420.1 ATTOC64-V,MTOM64,TOC64-V translocon at the outer membrane of chloroplasts 64-V Cre10.g418250 BLD10 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 Basal body protein Basal body protein localized to the cartwheel structure at the proximal end. Null mutants at this locus have no basal bodies or flagella. Putative prefoldin. g10356.t1,Cre10.g418250.t1.1,BLD10 - - - - - - - - - Cre07.g325650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g7521.t1,Cre07.g325650.t1.1 PF10601 PTHR23292 - - - - - - - Cre10.g460000 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g11279.t1 - - - - - - - - - Cre07.g317421 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g7337.t1,Cre07.g317421.t1.1 - - - - - - - - - Cre07.g329100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g7653.t1,Cre07.g329100.t1.1 - - - - - - - - - Cre13.g603400 SRH22 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 9 - - g14549.t1,SRH22 PF00176 PTHR10799,PTHR10799:SF59 - - - GO:0003677,GO:0005524 AT2G40770.1 - zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding Cre07.g327650 SMM25 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 14 - - g7621.t1,SMM25 PF05572 - - - - - - - - Cre02.g086350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 15 - - g1601.t1 - - - - - - - - - Cre16.g674550 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 14 - - g16629.t1 PF00027 PTHR11635:SF23,PTHR11635 - - - - - - - Cre07.g317550 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 - - g7341.t1 - - - - - - - - - Cre01.g035850 SEC24B - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 7 COP-II coat subunit Conserved Protein. SEC24 component of COP-II vesicle coat complex involved in ER-to-Golgi transport. Part of Sec23/24 sub-complex. g807.t1,Cre01.g035850.t1.1 PF04810,PF04811,PF08033,PF04815 PTHR13803 KOG1984 - - GO:0006886,GO:0006888,GO:0008270,GO:0030127 AT3G44340.1 CEF clone eighty-four Cre03.g197300 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 11 - - g4086.t1 - - - - - - - - - Cre10.g457600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g11226.t1 - - - - - - - - - Cre12.g550500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g13536.t1,Cre12.g550500.t1.1 - - - - - - - - - Cre12.g550501 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g13537.t1, g13537.t2 - - - - - - - - - Cre12.g520450 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g12824.t2, g12824.t1 PF01549 PTHR11475:SF34,PTHR11475 - - - - AT3G01720.1 - - Cre17.g742000 MOT8 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia. Has weak BLAST homology to inositol polyphosphate-4-phosphatase [EC:3.1.3.66, K01109] g17945.t1,Cre17.g742000.t1.1,MOT8 - PTHR12187,PTHR12187:SF8 - - - - - - - Cre06.g271100 CDKG1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 9 Cyclin dependent kinase Cyclin dependent kinase; Chlamydomonas specific; SDSTIRE motif. Novel CDK subfamily g6082.t1 PF00069 PTHR24056,PTHR24056:SF109 KOG0594 - - GO:0004672,GO:0005524,GO:0006468 AT3G48750.1 CDC2,CDC2A,CDC2AAT,CDK2,CDKA1,CDKA;1 cell division control 2 Cre10.g454550 COX19 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Cytochrome c oxidase assembly protein Similar to Cox19 protein, involved in assembly of cytochrome oxidase PMID: 15710684 g11158.t1,COX19, g11158.t2,Cre10.g454550.t1.1,COX19 PF06747 - KOG3477 - - - AT1G66590.2 ATCOX19-1,COX19-1 cytochrome c oxidase 19-1 Cre05.g238250 BLZ2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 3 - - g5484.t1,Cre05.g238250.t1.1,BLZ2 PF00170 - - - - GO:0003700,GO:0006355,GO:0043565,GO:0046983 AT2G36270.1 ABI5,GIA1 Basic-leucine zipper (bZIP) transcription factor family protein Cre06.g274550 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g6157.t1 PF00069,PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT2G40860.1 - protein kinase family protein / protein phosphatase 2C ( PP2C) family protein Cre08.g361350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g8461.t1,Cre08.g361350.t1.1 PF01936 - - - - - - - - Cre16.g665300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g16057.t1,Cre16.g665300.t1.1 - PTHR23125 - - - - - - - Cre11.g467529 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 15 - - g11459.t1,Cre18.g751200.t1.1 - - - - - - - - - Cre01.g011100 CAS1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 5 Terpenoid cylase, probably a squalene cyclase Terpenoid cylase, probably a squalene cyclase. Similar to cycloartenol synthase; (S)-2,3-epoxysqualene mutase from Arabidopsis thaliana - possibly involved in sterol/ergosterol biosynthesis. Previously annotated as CAS1 but this conflicts with Calcium S g278.t2,Cre01.g011100.t1.1,CAS1, g278.t1,CAS1 PF00432 PTHR11764,PTHR11764:SF3 KOG0497 5.4.99.8 K01853 GO:0003824 AT2G07050.1 CAS1 cycloartenol synthase 1 Cre13.g586400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g14389.t1,Cre13.g586400.t1.1 - PTHR10209:SF25,PTHR10209 KOG0143 - - - AT5G48020.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre03.g161050 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g3300.t1,Cre03.g161050.t1.1 PF05916 PTHR12914 KOG3303 - K10732 - AT1G80190.1 PSF1 partner of SLD five 1 Cre17.g733700 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17737.t1,Cre17.g733700.t1.1 - - - - - - - - - Cre16.g684100 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g16416.t1,Cre16.g684100.t1.1 - PTHR21663 - - - - AT1G67140.3 SWEETIE HEAT repeat-containing protein Cre06.g284100 RHP1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 Rh protein, CO2-responsive RH50-like protein; CO2-responsive gene, higher expression in cells grown in high CO2 (5%) than in air [PMID: 12032358; PMID: 11358367] g6606.t1,Cre06.g284100.t1.1 PF00909 PTHR11883:SF4,PTHR11883 KOG3796 - - - AT3G24300.1 AMT1;3,ATAMT1;3 ammonium transporter 1;3 Cre16.g664650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g16045.t1,Cre16.g664650.t1.1 - - - - - - - - - Cre17.g708500 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g17165.t1 - - - - - - - - - Cre01.g034100 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 - - g769.t2, g769.t1 PF00675 PTHR11851:SF64,PTHR11851 KOG0959 - - GO:0004222,GO:0006508 AT2G41790.1 - Insulinase (Peptidase family M16) family protein Cre03.g146667 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g2998.t1,Cre01.g062100.t1.1 - - - - - - - - - Cre07.g318551 CYA8 - 0 13 1.0 1.0 0 13 1.0 1.0 SP n - - - - g7364.t1 PF00211 PTHR24420 - - - GO:0009190,GO:0016849,GO:0035556 AT1G73066.1 - Leucine-rich repeat family protein Cre03.g171950 PEPC2,PPC2 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 4 Phosphoenolpyruvate carboxylase Phosphoenolpyruvate carboxylase, isoform 2 [PMID: 15941397, Accession number AAS01721]. Previously annotated as PEPC2 g3544.t1,PPC2 PF00311 - - 4.1.1.31 K01595 GO:0006099,GO:0008964,GO:0015977 AT1G68750.1 ATPPC4,PPC4 phosphoenolpyruvate carboxylase 4 Cre17.g707850 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17148.t1,Cre17.g707850.t1.1 PF07460 - - - - GO:0004519 - - - Cre04.g216950 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g4515.t1,Cre04.g216950.t1.1 PF08545,PF08541 PTHR11877,PTHR11877:SF13 - 2.3.1.180 K00648 GO:0004315,GO:0006633,GO:0008610,GO:0016747 AT1G62640.1 KAS III 3-ketoacyl-acyl carrier protein synthase III Cre03.g170600 POC4 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Centriole proteome protein Found in basal body proteome [PMID: 15964273]. Contains multiple SFI repeats, a conserved centrin-binding motif found in the yeast spindle pole body protein SFI1 g3513.t1,POC4 - - - - - - - - - Cre05.g240600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g5549.t1 - - - - - - - - - Cre04.g229518 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g5027.t1,Cre04.g229518.t1.1 - - - - - - - - - Cre13.g606150 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 - - g14617.t1 - - - - - - - - - Cre02.g144300 TPT6 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g2587.t1,Cre02.g144300.t1.1,TPT6 PF03151 PTHR11132 KOG1441 - - - AT1G76670.1 - Nucleotide-sugar transporter family protein Cre01.g026300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g604.t1,Cre01.g026300.t1.1 PF08238 PTHR11102 KOG4014 - - - AT1G18260.1 - HCP-like superfamily protein Cre11.g481126 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g11946.t2, g11946.t1 PF00175, PF00970,PF00175 PTHR19370:SF11,PTHR19370 KOG0534 - - GO:0016491,GO:0055114 AT5G20080.1 - FAD/NAD(P)-binding oxidoreductase Cre04.g225150 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g4920.t1 PF01753 - - - - GO:0008270 - - - Cre13.g607400 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g14644.t1 - - - - - - - - - Cre12.g516250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g12734.t1,Cre12.g516250.t1.1 - PTHR22904,PTHR22904:SF62 - - - - AT3G54010.2 DEI1,PAS1 FKBP-type peptidyl-prolyl cis-trans isomerase family protein Cre11.g478750 FKB15-2,FKB2 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase, secreted isoform; Target P prediction: TP length=22 g11885.t1,Cre11.g478750.t1.1,FKB2 PF00254 PTHR10516 KOG0549 - - GO:0006457 AT3G25220.1 FKBP15-1 FK506-binding protein 15 kD-1 Cre10.g448250 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 - - g11022.t1 PF00560 PTHR24420,PTHR24420:SF491 - - - GO:0005515 AT1G74360.1 - Leucine-rich repeat protein kinase family protein Cre16.g687450 CPLD54 - 0 5 1.0 1.0 0 5 1.0 1.0 SP Y - 6 - - g16341.t1,Cre16.g687450.t1.1 PF02254,PF00999 PTHR16254 - - - GO:0006813,GO:0006812,GO:0015299,GO:0016021,GO:0055085 AT4G04850.2 ATKEA3,KEA3 K+ efflux antiporter 3 Cre09.g400997 - 0 5 1.0 1.0 0 5 1.0 1.0 C n downregulated 11 - - g9979.t1,Cre02.g138550.t1.1 - - - - - - AT1G55280.1 - Lipase/lipooxygenase, PLAT/LH2 family protein Cre09.g416850 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 4 - - g10316.t1,Cre09.g416850.t1.1 - - - - - - - - - Cre16.g649600 PUF4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 Puf protein Puf protein: contains pumilio-family RNA binding domains (PUF). Puf protein family thought to repress gene expression by affecting mRNA translation or stability. g15718.t1,Cre16.g649600.t1.1,PUF4 PF00806 PTHR13102 KOG2188 - - GO:0003723 AT1G72320.1 APUM23,PUM23 pumilio 23 Cre10.g450926 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g11082.t1 - - - - - - - - - Cre12.g509000 MAPK3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Mitogen-Activated Protein Kinase Mitogen-Activated Protein Kinase Homolog 3; downstream kinase in the canonical MAP kinase pathway g12372.t1,MAPK3 PF00069 PTHR24055,PTHR24055:SF69 KOG0660 2.7.11.24 K04371 GO:0004672,GO:0005524,GO:0006468 AT4G01370.1 ATMPK4,MPK4 MAP kinase 4 Cre01.g012244 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g305.t1,Cre01.g012244.t1.1 - - - - - - - - - Cre09.g404750 SRR2 - 0 1 1.0 nan 0 1 1.0 nan O n - 18 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912);speract/scavenger receptor cysteine-rich (SRCR) family protein, transmembrane glycoprotein g9162.t1,SRR2 PF00530 PTHR19331 - - - GO:0005044,GO:0016020 - - - Cre06.g260350 DNJ6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 DnaJ-like protein DnaJ-like protein; similar to E. coli Caj1p and to presumably cytosolic Arabidopsis Q9T024 and Q9SJS8; contains long N-terminal extension, which is absent from Arabidopsis homologs; TargetP gives no clear prediction for DNJ6; contains N-terminal J-domain g5851.t1,Cre06.g260350.t1.1 PF00226,PF09333 PTHR24078 KOG0691 - - GO:0031072 AT2G21510.1 - DNAJ heat shock N-terminal domain-containing protein Cre01.g039500 FAP89 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 14 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein, similar to Notchless; found in the flagellar proteome [PMID: 15998802]. Possible histone acetyltransferase or myosin-heavy-chain kinase g882.t1,Cre01.g039500.t1.1 PF00400,PF05729 PTHR22847:SF185,PTHR22847 KOG0319 - - - AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre08.g365500 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 17 - - g8563.t1 - - - - - - - - - Cre03.g166050 SBD1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 7 Selenium binding protein Selenium binding protein. GI:15485720. AJ401228.1. Over 50% identical with selenium binding protein of Medicago, Oryza and Arabidopsis [PMID: 12026169]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [P g3408.t1,Cre03.g166050.t1.1,SBD1 PF05694 PTHR23300 KOG0918 - - GO:0008430 AT4G14040.1 EDA38,SBP2 selenium-binding protein 2 Cre13.g571850 APC10 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 Anaphase promoting complex subunit 10 Subunit of Anaphase Promoting Complex g14062.t1 PF03256 PTHR12936 - - K03357 - AT2G18290.1 APC10 anaphase promoting complex 10 Cre13.g576800 PHX21 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g14175.t1,PHX21 PF03171 PTHR12907,PTHR12907:SF3 KOG3710 1.14.11.- K09592 GO:0016491 - - - Cre07.g354250 PGK2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 Phosphoglycerate kinase Phosphoglycerate kinase (EC 2.7.2.3), probable cytosolic form; similarity to PGK from Thermosynechococcus (GenBank BAC09820) g8241.t1,Cre07.g354250.t1.1 PF00162 PTHR11406 KOG1367 - - GO:0004618,GO:0006096 AT1G56190.1 - Phosphoglycerate kinase family protein Cre12.g543902 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g13792.t1,Cre27.g774500.t1.1 PF00370,PF02782,PF00834 PTHR10196:SF8,PTHR10196 KOG2517 - - GO:0005975,GO:0016773,GO:0004750 AT3G01850.1 - Aldolase-type TIM barrel family protein Cre01.g021650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g501.t1,Cre01.g021650.t1.1 - - - - - - - - - Cre16.g691450 - 0 14 1.0 1.0 0 14 1.0 1.0 SP n - 2 - - g15652.t1,Cre16.g691450.t1.1 - - - - - - - - - Cre03.g203793 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g4400.t1,Cre19.g753400.t1.1 PF05686 PTHR12203 - - - - - - - Cre14.g632300 HDA6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g15236.t1,HDA6 PF00850 PTHR10625,PTHR10625:SF9 KOG1344 - - - AT5G26040.2 HDA2 histone deacetylase 2 Cre11.g477000 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 15 - - g11846.t1,Cre11.g477000.t1.1 PF00069 PTHR24343,PTHR24343:SF125 KOG0598 - - GO:0004672,GO:0005524,GO:0006468 AT5G66880.1 SNRK2-3,SNRK2.3,SRK2I sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 Cre09.g390000 SRH17 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 8 - - g9496.t1,Cre09.g390000.t1.1,SRH17 PF00271,PF05641,PF00176 PTHR10799 KOG1001 - - GO:0003676,GO:0004386,GO:0005524,GO:0003723,GO:0003677 AT5G18620.2 CHR17 chromatin remodeling factor17 Cre06.g275900 HON2 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Histone H1 Histone H1 associated with replication linked cluster IV; not H1A of Morris et al. 1990 [PMID: 2319488]. Likely H1B [PMID: 7480339]. ChromoDB HON3401 g6185.t1,Cre06.g275900.t1.1,HON2 PF00538 PTHR11467 - - K11275 GO:0000786,GO:0003677,GO:0005634,GO:0006334 AT2G18050.1 HIS1-3 histone H1-3 Cre03.g201332 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g4297.t1,Cre03.g201332.t1.1 PF00856 PTHR13271 - - - GO:0005515 AT4G20130.1 PTAC14 plastid transcriptionally active 14 Cre07.g320850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g7418.t1,Cre07.g320850.t1.1 PF00232 PTHR10353 KOG0626 3.2.1.21 K05350 GO:0004553,GO:0005975 AT5G36890.1 BGLU42 beta glucosidase 42 Cre01.g022100 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g510.t1,Cre01.g022100.t1.1 PF00632 PTHR11254,PTHR11254:SF143 - - - GO:0005622,GO:0006464,GO:0016881 AT4G12570.1 UPL5 ubiquitin protein ligase 5 Cre07.g321100 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 - - g7423.t1,Cre07.g321100.t1.1 PF00370,PF02782 PTHR10196:SF10,PTHR10196 KOG2517 2.7.1.17 K00854 GO:0005975,GO:0016773 AT5G49650.1 XK-2,XK2 xylulose kinase-2 Cre12.g510000 - 0 14 1.0 1.0 0 14 1.0 1.0 C n upregulated 2 - - g12351.t1,Cre12.g510000.t1.1 PF05542 - - - - - AT1G32160.1 - Protein of unknown function (DUF760) Cre17.g747647 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g18069.t1,Cre20.g757750.t1.1 PF10294 PTHR23109 KOG3201 - - - AT5G27410.2 - D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein Cre01.g054433 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1202.t2, g1202.t1 - PTHR13078,PTHR13078:SF14 - - - - - - - Cre01.g051400 ERD2A - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 KDEL Receptor A Expressed Protein. Conserved protein similar to KDEL receptor involved in ER retention of lumenal proteins. g1138.t2,ERD2A, g1138.t1,Cre01.g051400.t1.1,ERD2A PF00810 PTHR10585 KOG3106 - K10949 GO:0006621,GO:0016021,GO:0046923 AT3G25040.1 ERD2B endoplasmic reticulum retention defective 2B Cre01.g027550 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 Cytochrome P450, CYP97 superfamily, CYP97B family Cytochrome P450, CYP97 superfamily, CYP97B family. CYP97A3 of Arabidopsis is a carotenoid beta-ring hydroxylase [PMID: 16492736]. CYP97C1 of Arabidopsis (LUT1) is a carotenoid epsilon-ring hydroxylase [PMID: 14709673]. Previously annotated as CYP97B6 g629.t1 PF00067 PTHR24301,PTHR24301:SF127 - - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT4G15110.1 CYP97B3 cytochrome P450, family 97, subfamily B, polypeptide 3 Cre11.g467747 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g11677.t1,Cre22.g764300.t1.1 - - - - - - - - - Cre02.g119450 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 8 - - g2478.t1,Cre02.g119450.t1.1 - - - - - - AT3G05320.1 - O-fucosyltransferase family protein Cre09.g414750 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - - - g10270.t1 PF03016,PF07974 PTHR11062,PTHR11062:SF14 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre09.g411500 URN4 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g10188.t2,URN4, g10188.t3,URN4 PF01156 PTHR12304 KOG2938 - - - AT5G18860.1 - inosine-uridine preferring nucleoside hydrolase family protein Cre02.g085000 - 0 9 1.0 1.0 0 9 1.0 1.0 C n downregulated 14 - - g1570.t1 PF00400 PTHR22847:SF135,PTHR22847 - - - - AT2G33340.1 MAC3B MOS4-associated complex 3B Cre10.g452400 CSF1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 Predicted protein of CSF family - g11112.t1,Cre10.g452400.t1.1,CSF1 - - - - - - - - - Cre09.g413900 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 11 - - g10252.t1,Cre09.g413900.t1.1 PF05686 PTHR12203 - - - - - - - Cre01.g004350 ALIX,HLM1,ROC77 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 8 - - g107.t1,Cre01.g004350.t1.1,ALIX,HLM1,ROC77 PF03097 PTHR23030:SF13,PTHR23030 KOG2220 - K12200 - AT1G15130.1 - Endosomal targeting BRO1-like domain-containing protein Cre12.g505800 CAM16,MSCL2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 Calmodulin-like Calmodulin-like with mechanosensitive ion channel (MSC) like domain. Previously annotated as MSCL2 g12451.t1,CAM16,MSCL2 PF00924 PTHR10891:SF81,PTHR10891 - - - GO:0016020,GO:0055085 AT2G17010.1 - Mechanosensitive ion channel family protein Cre09.g405900 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10064.t1 PF07714 PTHR23257:SF121,PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre02.g076150 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g1366.t1,Cre02.g076150.t1.1 PF09752 PTHR13617,PTHR13617:SF1 - - - - AT3G12150.1 - - Cre17.g700500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g16987.t1 - - - - - - - - - Cre07.g353750 MMP10 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - Metalloproteinase of VMP family Belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoprotein g8229.t1,Cre07.g353750.t1.1 PF05548 - - - - - - - - Cre10.g465950 CGL148 - 0 1 1.0 nan 0 1 1.0 nan O Y - - - - g11420.t1,Cre10.g465950.t1.1 PF08648 - - - K12846 - AT5G57370.1 - - Cre04.g214321 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g4497.t1,Cre49.g789758.t1.1,Cre49.g789758.t1.2 - - - - - - - - - Cre06.g292282 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6772.t1 - - - - - - - - - Cre07.g316100 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 - - g7311.t1 PF08626 PTHR21512,PTHR21512:SF5 - - - - AT5G11040.1 AtTRS120,TRS120 TRS120 Cre10.g433250 XUV4 - 0 1 1.0 nan 0 1 1.0 nan O n - - Xanthine/uracil/vitamin C permease-like - g10688.t1,Cre10.g433250.t1.1,XUV4 PF00860 PTHR11119,PTHR11119:SF3 KOG1292 - - GO:0005215,GO:0006810,GO:0016020,GO:0055085 AT5G62890.1 - Xanthine/uracil permease family protein Cre06.g266800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g5988.t1 PF01497 - - - - GO:0005381,GO:0006827 - - - Cre13.g566200 CGL112 - 0 1 1.0 nan 0 1 1.0 nan O Y - - - - g13933.t1,Cre13.g566200.t1.1 PF00642 PTHR14493,PTHR14493:SF17 - - - GO:0003676,GO:0008270 AT2G25900.1 ATCTH,ATTZF1 Zinc finger C-x8-C-x5-C-x3-H type family protein Cre16.g648150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g15687.t1 - - - - - - - - - Cre16.g695600 DNJ10 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 DnaJ-like protein and Myb-like transcription factor DnaJ-like protein and Myb-like transcription factor; probably nuclear/cytosolic; similar to Chlamy Q6JX09_CHLRE GlsA-related protein and to Volvox GLSA; contains J-domain (pfam00226) at the N-terminus and Myb_DNA-binding-Domain (pfam00249) at the C-termin g15556.t1,Cre16.g695600.t1.1 PF00249,PF00226 PTHR24076 - - - GO:0031072 AT5G06110.1 - DnaJ domain ;Myb-like DNA-binding domain Cre05.g243354 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 6 - - g5279.t1,Cre05.g243354.t1.1 - - - - - - - - - Cre05.g243352 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g5281.t1,Cre05.g243352.t1.1 - - - - - - - - - Cre05.g243353 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g5280.t1,Cre05.g243353.t1.1 - PTHR22870 - - - - AT5G63860.1 UVR8 Regulator of chromosome condensation (RCC1) family protein Cre03.g155800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g3178.t1,Cre03.g155800.t1.1 PF01176 PTHR21641 KOG2925 - - GO:0003723,GO:0003743,GO:0006413 AT2G40780.1 - Nucleic acid-binding, OB-fold-like protein Cre05.g243351 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g5282.t1,Cre05.g243351.t1.1 PF00075,PF00078 PTHR10178,PTHR10178:SF42 - - - GO:0003676,GO:0004523,GO:0003723,GO:0003964,GO:0006278 - - - Cre13.g569450 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 5 - - g14012.t1 - PTHR10992,PTHR10992:SF209 - - - - - - - Cre12.g484834 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12033.t2, g12033.t1 - - - - - - - - - Cre17.g746197 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g18040.t1 - - - - - - - - - Cre03.g202300 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 10 - - g4275.t1 - - - - - - - - - Cre12.g561450 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g13288.t1,Cre12.g561450.t1.1 PF04055,PF12345 - - - - GO:0003824,GO:0051536 - - - Cre09.g402367 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g10016.t1,Cre02.g140100.t1.1,Cre02.g140100.t1.2 - - KOG1769 - - - - - - Cre17.g725800 - 0 1 1.0 nan 0 1 1.0 nan - n - 12 - - g17552.t1,Cre17.g725800.t1.1 - - - - - - - - - Cre01.g019100 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 11 - - g448.t1,Cre01.g019100.t1.1 PF02826,PF00389 PTHR10996,PTHR10996:SF46 KOG0069 - - GO:0016616,GO:0048037,GO:0008152,GO:0051287 AT3G19480.1 - D-3-phosphoglycerate dehydrogenase Cre01.g043200 CGLD6 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 Predicted protein Conserved expressed protein g966.t1,Cre01.g043200.t1.1 - - - - - - AT3G50685.1 - - Cre10.g437400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 - - g10778.t1,Cre10.g437400.t1.1 - - - - - - - - - Cre14.g611900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g14747.t2,Cre14.g611900.t1.1, g14747.t1 - - - - - - - - - Cre17.g728800 IDH1 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 10 Isocitrate dehydrogenase, NAD-dependent NAD-dependent isocitrate dehydrogenase, probable mitochondrial isoform g17614.t1,Cre17.g728800.t1.1 PF00180 PTHR11835,PTHR11835:SF5 KOG0784 1.1.1.41 K00030 GO:0000287,GO:0016616,GO:0051287,GO:0055114 AT4G35260.1 IDH-I,IDH1 isocitrate dehydrogenase 1 Cre10.g448000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g11017.t1 - - - - - - - - - Cre13.g568850 NFU1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 Iron-sulfur cluster assembly scaffold protein Iron-sulfur cluster assembly scaffold protein; homology to E. coli IscU and yeast ISU1; possibly localized to mitochondria. [PMID: 12553879]. Previously annotated as IFU1 g13998.t1,Cre13.g568850.t1.1 PF01592 PTHR10093 KOG3361 - K04488 GO:0005506,GO:0016226,GO:0051536 AT4G22220.1 ATISU1,ISU1 SufE/NifU family protein Cre09.g395176 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g9802.t1,Cre02.g131588.t2.1, g9802.t2,Cre02.g131588.t1.1,Cre02.g131588.t1.2 - - - - - - - - - Cre13.g582950 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g14312.t1,Cre13.g582950.t1.1 - - - - - - - - - Cre07.g352400 IPP5 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 - - g8196.t1,Cre07.g352400.t1.1,IPP5 PF03372 PTHR11200:SF29,PTHR11200 KOG0565 - - - AT5G04980.2 - DNAse I-like superfamily protein Cre10.g430750 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 18 - - g10637.t1 PF00249 PTHR25040:SF29,PTHR25040 - - - - AT2G38090.1 - Duplicated homeodomain-like superfamily protein Cre07.g327226 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g7610.t1 PF00534 - - - - GO:0009058 - - - Cre14.g623600 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g15029.t1,Cre14.g623600.t1.1 - - - - - - - - - Cre01.g029100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g663.t1,Cre01.g029100.t1.1 PF05916 PTHR12772 KOG4071 - K10733 GO:0005634,GO:0006260 AT3G12530.1 PSF2 PSF2 Cre02.g106650 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 15 - - g2186.t1 PF00069 PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G17290.1 ATCDPK3,ATCPK6,CPK6 Calcium-dependent protein kinase family protein Cre02.g096200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g1953.t1,Cre02.g096200.t1.1 PF01875 PTHR11060 KOG3086 - K06990 - AT2G25280.1 - - Cre10.g441250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g10858.t1,Cre10.g441250.t1.1 PF10149 PTHR14605,PTHR14605:SF1 KOG4838 - - - - - - Cre09.g394806 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g9792.t1,Cre02.g131150.t1.1,Cre02.g131150.t1.2 - - - - - - - - - Cre01.g000850 CPLD38 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 Predicted protein Conserved expressed protein g20.t1,Cre01.g000850.t1.1 PF11460 - - - - - AT3G17930.1 - - Cre02.g074370 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g1321.t1,Cre02.g074370.t1.1 PF00069,PF00036 PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT5G12180.1 CPK17 calcium-dependent protein kinase 17 Cre07.g355750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g8272.t1,Cre07.g355750.t1.1 PF00400 PTHR22844 - - - - AT5G21040.1 FBX2 F-box protein 2 Cre01.g039750 PDF1B - 0 1 1.0 nan 0 1 1.0 nan C n - - Peptide deformylase Peptide deformylase (PDF) (Polypeptide deformylase); [EC:3.5.1.88] (DEFM); Arabidopsis ortholgue is directed to both chloroplast and mitochondria (PMID: 11060042); removes formyl-group from initiator fMet of organelle-encoded proteins g888.t1,Cre01.g039750.t1.1 PF01327 PTHR10458 - 3.5.1.88 K01462 GO:0005506,GO:0006412,GO:0042586 AT5G14660.1 ATDEF2,DEF2,PDF1B peptide deformylase 1B Cre02.g078804 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 10 - - g1431.t1 PF12499 - - - - - - - - Cre07.g335750 IFT88 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 14 Intraflagellar transport protein 88 Intraflagellar transport particle protein 88 g7816.t1 PF10300 PTHR23083,PTHR23083:SF6 KOG2003 - - - AT3G04240.1 SEC Tetratricopeptide repeat (TPR)-like superfamily protein Cre01.g015750 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 - - g378.t1,Cre01.g015750.t1.1 PF07978 PTHR21017:SF1,PTHR21017 KOG2883 - - - - - - Cre09.g400851 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g9251.t1 - - - - - - - - - Cre13.g587200 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 - - g14406.t1 PF06423 PTHR20661 - 2.3.-.- K05283 GO:0005789,GO:0006506,GO:0016021,GO:0016746 AT4G17910.1 - transferases, transferring acyl groups Cre12.g557500 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n downregulated 16 - - g13379.t1 PF00233 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre03.g201650 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g4289.t1 - - - - - - - - - Cre03.g150650 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g3064.t1,Cre03.g150650.t1.1 PF04641 PTHR12775 KOG3113 - - - AT5G58020.1 - - Cre14.g629750 MME2 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 18 NADP malic enzyme Malic Enzyme, NADP-dependent; malate dehydrogenase, decarboxylating (EC 1.1.1.40); direct repeat with MME3; likely cytosolic based on lack of predicted N-terminal targeting sequence g15166.t1, g15166.t2 PF00390,PF03949 PTHR23406 KOG1257 1.1.1.40 K00029 GO:0016616,GO:0051287 AT5G25880.1 ATNADP-ME3,NADP-ME3 NADP-malic enzyme 3 Cre12.g551900 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g13503.t1,Cre12.g551900.t1.1 PF05811 PTHR21096 KOG3377 - - - AT2G31725.1 - Eukaryotic protein of unknown function (DUF842) Cre06.g297082 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 16 - - g6874.t1,Cre57.g791350.t1.1, g6874.t2,Cre57.g791350.t2.1 PF00211 PTHR24420 - 4.6.1.1 K01768 GO:0009190,GO:0016849,GO:0035556 AT5G07280.1 EMS1,EXS Leucine-rich repeat transmembrane protein kinase Cre01.g049050 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1088.t1,Cre01.g049050.t1.1 - - - - - - AT3G27050.1 - - Cre01.g003487 - 0 4 1.0 1.0 0 4 1.0 1.0 O Y - - - - g82.t1 PF09736 - KOG2654 - K13106 - AT1G31870.1 - - Cre05.g236000 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 16 - - g5425.t1 PF07714 PTHR23257 KOG1187 - - GO:0004672,GO:0006468 AT4G35780.1 - ACT-like protein tyrosine kinase family protein Cre12.g493400 SMC4 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Structural Maintenance of Chromosomes protein Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation. ChromoDB CPC3401 g12082.t1 PF02463,PF06470 PTHR18937:SF13,PTHR18937 KOG0996 - K06675 GO:0005524,GO:0005694,GO:0005515,GO:0051276 AT5G48600.2 ATCAP-C,ATSMC3,ATSMC4,SMC3 structural maintenance of chromosome 3 Cre09.g401100 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 8 - - g9244.t1,Cre09.g401100.t1.1 PF03798 PTHR12560 - - - GO:0016021 AT3G25540.1 LAG1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein Cre12.g493050 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g12089.t1,Cre12.g493050.t1.1 - - - - - - - - - Cre01.g026700 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g612.t1 - - - - - - - - - Cre06.g254450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated - - - g5724.t1,Cre06.g254450.t1.1 PF00646 PTHR12874,PTHR12874:SF4 - - K10295 GO:0005515 AT1G21760.1 ATFBP7,FBP7 F-box protein 7 Cre02.g115550 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g2390.t1,Cre02.g115550.t1.1 - - - - - - - - - Cre09.g414100 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10256.t1,Cre09.g414100.t1.1 - - - - - - - - - Cre14.g610351 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 7 - - g14711.t1,Cre14.g610350.t1.3 PF08637 - - - - - AT5G12290.1 DGS1 dgd1 suppressor 1 Cre09.g408464 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g10123.t1 PF10637 PTHR12117 KOG3844 - - GO:0005506,GO:0016706,GO:0031418,GO:0055114 - - - Cre16.g686641 - 0 1 1.0 nan 0 1 1.0 nan SP n - 4 - - g16161.t1 - - - - - - - - - Cre16.g677877 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g16753.t1,Cre01.g067200.t1.1 - - - - - - - - - Cre02.g110000 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated 15 - - g2257.t2, g2257.t1 PF07974 PTHR10044 KOG4172 - - - AT2G38220.1 - RING/U-box superfamily protein Cre13.g581450 RPN7 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 26S proteasome regulatory subunit 26S proteasome regulatory complex, lid subcomplex, non-ATPase subunit RPN7 (subunit 6) (PSD6) g14280.t2,Cre13.g581450.t1.1,RPN7, g14280.t1,RPN7 PF10602,PF01399 PTHR14145:SF1,PTHR14145 KOG0687 - K03037 GO:0005515 AT4G24820.1 - 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain Cre07.g334150 - 0 5 1.0 1.0 0 5 1.0 1.0 M n downregulated 15 - - g7782.t1 PF00020 - - - - GO:0005488 - - - Cre06.g266150 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 14 - - g5974.t1,Cre06.g266150.t1.1 PF00069 PTHR24347,PTHR24347:SF115 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G17520.1 ATIRE1-2,IRE1-2,IRE1A Endoribonuclease/protein kinase IRE1-like Cre07.g325812 ZYS2 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g7578.t1,ZYS2 - - - - - - - - - Cre12.g499850 CNK7 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 NimA-related protein kinase NimA (never-in-mitosis) related kinase homolog. Similar to serine/threonine-protein kinase Nek7 [Homo sapiens] g12581.t1,CNK7 PF00069 PTHR24362 KOG0591 2.7.11.1 K08857 GO:0004672,GO:0005524,GO:0006468 AT1G50240.2 FU Protein kinase family protein with ARM repeat domain Cre07.g327050 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g7605.t1,Cre07.g327050.t1.1 - PTHR23151:SF8,PTHR23151 - - - - - - - Cre03.g195950 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 12 - - g4059.t1,Cre03.g195950.t1.1 - PTHR11439,PTHR11439:SF18 - - - - - - - Cre12.g532327 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g13098.t1,Cre12.g532327.t1.1 - - - - - - - - - Cre02.g141326 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g2704.t1 - - - - - - - - - Cre12.g502550 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 9 - - g12520.t1 - - - - - - - - - Cre10.g459600 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g11271.t1 PF03914 PTHR12048 KOG2038 - - - AT1G72440.1 EDA25,SWA2 CCAAT-binding factor Cre03.g199090 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g4347.t1,Cre03.g199090.t1.1 - - - - - - - - - Cre07.g353230 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g8215.t1,Cre07.g353230.t1.1 PF03747 - - - - - - - - Cre08.g360250 DUR4,DUR31,DUR3B - 0 4 1.0 1.0 0 4 1.0 1.0 SP n downregulated 16 Urea active transporter Na+/solute symporter. Previously annotated as DUR3B g8436.t1,Cre08.g360250.t1.1,DUR4,DUR3B PF00474 PTHR11819,PTHR11819:SF15 KOG2348 - - GO:0005215,GO:0006810,GO:0016020,GO:0055085 AT5G45380.1 ATDUR3,DUR3 solute:sodium symporters;urea transmembrane transporters Cre06.g309900 MST2 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - Predicted protein with sequence similarity to mastigoneme protein Sequence similarity to mastigoneme protein (MST1); no EST support g7171.t1,Cre06.g309900.t1.1,MST2 PF07699 PTHR22727,PTHR22727:SF9 - - - - - - - Cre03.g197500 MOT6 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g4090.t1,MOT6, g4090.t2,Cre03.g197500.t1.1,MOT6 - PTHR10891:SF5,PTHR10891 KOG0027 - - - AT1G24620.1 - EF hand calcium-binding protein family Cre01.g014500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g352.t1 PF07714 PTHR23257 KOG0192 2.7.10.2 K08896 GO:0004672,GO:0006468 AT1G16270.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre17.g696800 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g16901.t1, g16901.t2 - - - - - - - - - Cre03.g168050 GTF2 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g3456.t1,Cre03.g168050.t1.1,GTF2 PF00439 PTHR22880 - - - GO:0005515 AT2G34900.1 GTE01,GTE1,IMB1 Transcription factor GTE6 Cre09.g398650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9304.t1,Cre09.g398650.t1.1 PF10312,PF09732 PTHR21737,PTHR21737:SF4 KOG2370 - - - AT1G03910.1 - - Cre09.g398652 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g9305.t1 - - - - - - - - - Cre17.g699350 SMM51 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g16961.t1,SMM51 PF08242 PTHR10108,PTHR10108:SF53 - - - - AT2G43940.1 ATHOL3,HOL3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre17.g718600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g17391.t1,Cre17.g718600.t1.1 PF12146 PTHR11614,PTHR11614:SF34 KOG1455 - - - AT1G73480.1 - alpha/beta-Hydrolases superfamily protein Cre17.g705200 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 17 - - g17092.t1 PF05548 - KOG4590 - - - - - - Cre09.g395769 FAP177 - 0 19 1.0 1.0 0 19 1.0 1.0 O n - 15 - - g9818.t1,Cre02.g132350.t1.1, g9818.t2,Cre02.g132350.t2.1 - - - - - - - - - Cre07.g314866 EBM4 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 2 - - g7285.t1,EBM4 - - KOG0956 - - - AT4G28320.1 - Glycosyl hydrolase superfamily protein Cre02.g106400 LCA1,PDAT1 - 0 12 1.0 1.0 0 12 1.0 1.0 C n - 9 Lecithin:cholesterol acyltransferase Lecithin:cholesterol acyltransferase; phospholipid:diacylglycerol acyltransferase (compare Trypanosoma cruzi strain CL Brener) g2181.t1,LCA1 PF02450 PTHR11440,PTHR11440:SF4 KOG2369 2.3.1.158 K00679 GO:0004607,GO:0006629 AT5G13640.1 ATPDAT,PDAT,PDAT1 phospholipid:diacylglycerol acyltransferase Cre08.g359350 CARB1,CMP2 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g8417.t1,Cre08.g359350.t1.1,CMP2 PF02785,PF02786,PF00289 PTHR18866,PTHR18866:SF55 - 6.3.4.14,6.4.1.2 K01961 GO:0016874,GO:0003824,GO:0005524,GO:0008152 AT5G35360.1 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit Cre06.g278270 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g6412.t1,Cre13.g601794.t1.1,Cre13.g601794.t1.2 - - - - - - - - - Cre03.g144204 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2873.t1,Cre01.g056750.t1.1,Cre01.g056750.t1.2 PF08718 PTHR10219:SF4,PTHR10219 KOG4189 - - GO:0005737,GO:0017089,GO:0046836,GO:0051861 AT4G39670.1 - Glycolipid transfer protein (GLTP) family protein Cre07.g339050 NSG11 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g7886.t1,Cre07.g339050.t1.1,NSG11 PF00241 PTHR11913 KOG1735 - - GO:0003779,GO:0005622 AT1G01750.1 ADF11 actin depolymerizing factor 11 Cre03.g189605 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3927.t1,Cre03.g189605.t1.1 - PTHR14027,PTHR14027:SF10 KOG2002 - - - AT2G06210.1 ELF8,VIP6 binding Cre16.g652900 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15789.t1 PF00076 PTHR24012:SF241,PTHR24012 KOG0148 - - GO:0003676 AT1G49600.1 ATRBP47A,RBP47A RNA-binding protein 47A Cre02.g103150 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 16 - - g2107.t1 - - - - - - - - - Cre03.g186650 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g3867.t1,Cre03.g186650.t1.1 - - - - - - - - - Cre11.g482900 RAB20,RABC3 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 Small Rab-related GTPase Expressed Protein. Similar to the RABC/Rab18-type GTPases, one of 3 C-type Rabs. Previously annotated as RABC3 g11989.t1,RAB20,RABC3 PF00071 PTHR24073,PTHR24073:SF482 KOG0080 - K07910 - AT1G43890.1 ATRAB-C1,ATRAB18,ATRABC1,RAB18,RAB18-1,RABC1 RAB GTPASE HOMOLOG B18 Cre16.g679850 CYG35 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - Adenylate/guanylate cyclase Similar to membrane guanylyl cyclase OlGC7 [Danio rerio] g16513.t1 PF00211 PTHR11920:SF127,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre14.g633200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g15266.t1, g15266.t2 - - - - - - - - - Cre10.g422150 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g10444.t1 PF05577 PTHR11010,PTHR11010:SF14 KOG2183 3.4.16.2 K01285 GO:0006508,GO:0008236 AT5G65760.1 - Serine carboxypeptidase S28 family protein Cre16.g672750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g16668.t1,Cre16.g672750.t1.1 PF00013 PTHR10288 - - - GO:0003723 AT5G04430.1 BTR1,BTR1L,BTR1S binding to TOMV RNA 1L (long form) Cre08.g377150 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 4 - - g8882.t1,Cre08.g377150.t1.1 PF02515 PTHR11837 KOG3957 - - GO:0003824,GO:0008152 - - - Cre06.g269350 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6043.t1,Cre06.g269350.t1.1 PF07842 PTHR12214 - - K13211 GO:0003677,GO:0003700,GO:0005634,GO:0006355 AT5G08550.1 ILP1 GC-rich sequence DNA-binding factor-like protein Cre07.g348150 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g8101.t1,Cre07.g348150.t1.1 - - - - - - - - - Cre03.g169900 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated - - - g3498.t1,Cre03.g169900.t1.1 - - - - - - - - - Cre05.g239050 SMM15 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 1 - - g5512.t1,Cre05.g239050.t1.1,SMM15 PF08242 PTHR22809 KOG2361 - - - AT2G26200.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre16.g674750 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g16624.t1,Cre16.g674750.t1.1 - - - - - - - - - Cre12.g492750 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 8 - - g12095.t1 PF00686 - KOG4674 - - GO:0003824,GO:0005975 AT5G01260.1 - Carbohydrate-binding-like fold Cre10.g454700 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g11161.t1,Cre10.g454700.t1.1 PF00560 PTHR10588 KOG0531 - - GO:0005515 AT5G19680.1 - Leucine-rich repeat (LRR) family protein Cre17.g704150 GDP5,GDPD5 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 Glycerophosphoryl diester phosphodiesterase family protein Glycerophosphoryl diester phosphodiesterase family protein. Previously annotated as GDPD5 g17071.t1,GDP5,GDPD5 PF03009 PTHR23344 - - - GO:0006071,GO:0008889 AT5G08030.1 - PLC-like phosphodiesterases superfamily protein Cre02.g084950 CYG71 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 3 - - g1569.t1,Cre02.g084950.t1.1 PF00625 PTHR23117,PTHR23117:SF5 KOG0707 2.7.4.8 K00942 GO:0005515 AT3G06200.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre09.g406100 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g10068.t1,Cre09.g406100.t1.1 - - - - - - - - - Cre09.g401738 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 3 - - g9999.t1,Cre02.g139550.t1.1,Cre02.g139550.t1.2 - PTHR17901:SF6,PTHR17901 KOG4549 - - - AT2G14110.1 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre04.g213652 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g4706.t1 PF12009 PTHR12066 - 2.7.7.49 K11126 GO:0003964 AT5G16850.1 ATTERT,TERT telomerase reverse transcriptase Cre06.g289400 PDE11 - 0 9 1.0 1.0 0 9 1.0 1.0 C n downregulated 15 3\',5\'-cyclic-nucleotide phosphodiesterase Similar to calcium/calmodulin-dependent 3\',5\'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. Long protein with C-terminal phosphodiesterase domain g6715.t1,Cre06.g289400.t1.1,PDE11, g6715.t2,PDE11 PF00233,PF03924 PTHR11347:SF75,PTHR11347 - 3.1.4.17 K01120 GO:0004114,GO:0007165 - - - Cre07.g319150 PTP4 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g7378.t1,Cre07.g319150.t1.1,PTP4 PF00782 PTHR10367 - 3.1.3.16,3.1.3.48 K14165 GO:0006470,GO:0008138 AT3G09100.1 - mRNA capping enzyme family protein Cre12.g505250 FAP288 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 12 Flagellar Associated Protein EF hand-containing Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g12462.t1,Cre12.g505250.t1.1 - PTHR10891,PTHR10891:SF40 KOG0027 - - - AT2G31500.1 CPK24 calcium-dependent protein kinase 24 Cre09.g392251 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 18 - - g9447.t1 - - - - - - - - - Cre02.g146450 CYG60 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 15 - - g2532.t1 PF00211 PTHR11920:SF147,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre03.g144867 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g2907.t1,Cre01.g057950.t1.1,Cre01.g057950.t1.2 - PTHR12170,PTHR12170:SF2 KOG0396 - - - AT3G55070.1 - LisH/CRA/RING-U-box domains-containing protein Cre13.g567800 PPP41,PP2A2 - 0 1 1.0 nan 0 1 1.0 nan C n - - Protein phosphatase 2A regulatory B subunit Protein phosphatase 2A regulatory B subunit. Contains B56 domain; homology to the Ser-/Thr-protein phosphatase2A (widerborst) regulatory subunit of Drosophila where it is involved in the circadian clock. Previously annoated as PP2A2 g13972.t1,Cre13.g567800.t1.1,PP2A2,PPP41 PF01603 PTHR10257 KOG2085 - K11584 GO:0000159,GO:0007165,GO:0008601 AT3G26020.1 - Protein phosphatase 2A regulatory B subunit family protein Cre12.g516350 COX10 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 Cytochrome c oxidase assembly protein Cytochrome c oxidase assembly protein Cox10, putative heme A:farnesyltransferase [PMID: 15710684] g12737.t1,Cre12.g516350.t1.1,COX10 PF01040 PTHR11048 KOG1380 2.5.1.- K02257 GO:0004659,GO:0016021 AT2G44520.1 COX10 cytochrome c oxidase 10 Cre08.g369800 DHS2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Deoxyhypusine synthase Transfers the aminobutyl moiety of spermidine to a specific lysine residue of eIF5A, forming deoxyhypusine (PMID: 17476569); deoxypusine will then be hydroxylated to generate the unusual aminoacid hypusine; an important mechanism controlling cell prolifer g8666.t1,Cre08.g369800.t1.1 PF01916 PTHR11703 KOG2924 2.5.1.46 K00809 GO:0008612 AT5G05920.1 DHS,EDA22 deoxyhypusine synthase Cre05.g247900 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 13 - - g5174.t1 PF00646 - - - - GO:0005515 - - - Cre02.g088450 CPLD29 - 0 3 1.0 1.0 0 3 1.0 1.0 SP Y - 16 Conserved expressed protein - g1647.t1,CPLD29 PF02194,PF00787,PF08628 PTHR22999 KOG2527 - - GO:0005515,GO:0007154,GO:0035091 AT1G15240.2 - Phox-associated domain;Phox-like;Sorting nexin, C-terminal Cre01.g041050 AOC6 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 7 Cationic amino acid transporter, probably mitochondrial Related to human SLC7A family of solute carriers, involved in cationic amino acid transport (arginine, lysine, ornithine); this is probably the gene mutated in the L-MSX resistant mutant msr1, mapped to a compatible position on LG I. Probably mitochondri g919.t1,AOC6, g919.t2,AOC6 PF00324 PTHR11785,PTHR11785:SF53 KOG1286 - - GO:0006810,GO:0016020,GO:0055085,GO:0003333,GO:0015171 AT4G21120.1 AAT1,CAT1 amino acid transporter 1 Cre04.g224550 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 8 - - g4898.t2, g4898.t1,Cre04.g224550.t1.1 PF05686 PTHR12203 - - - - AT1G63420.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre17.g739850 MOT47 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 10 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g17895.t1,Cre17.g739850.t1.1,MOT47 - PTHR10588:SF26,PTHR10588 KOG0531 - - - AT1G48540.1 - Outer arm dynein light chain 1 protein Cre06.g280600 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - - - - g6527.t1,Cre06.g280600.t1.1 - - - - - - AT5G55490.1 ATGEX1,GEX1 gamete expressed protein 1 Cre12.g561100 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g13295.t1 PF06839,PF00226 - - - - GO:0008270,GO:0031072 - - - Cre19.g750647 - 0 5 1.0 1.0 0 5 1.0 1.0 C n downregulated 17 - - g18130.t1,Cre33.g782700.t2.1, g18130.t2,Cre33.g782700.t1.1 PF00069 PTHR23257:SF370,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G22750.1 - Protein kinase superfamily protein Cre06.g258150 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g5802.t1 PF10199 - - - - - AT5G65960.1 - GTP binding Cre03.g165950 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 8 - - g3405.t1,Cre03.g165950.t1.1 - - - - - - - - - Cre16.g680800 CGL155 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - - - - g16491.t1,Cre16.g680800.t1.1 PF00651 - - - - GO:0005515 - - - Cre02.g141150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 16 - - g2667.t1 - - - - - - - - - Cre12.g502700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 13 - - g12516.t1,Cre12.g502700.t1.1 - PTHR18870,PTHR18870:SF9 - - - - - - - Cre01.g032200 FAL3 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - - Similar to Flagellar Associated Protein FAP187 Similart to conserved uncharacterized Flagellar Associated Protein FAP187 that is found in the flagellar proteome [PMID: 15998802]. This gene model overlaps FAP187 from v3 g729.t1,Cre01.g032200.t1.1,FAL3 - - - - - - - - - Cre01.g021000 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g488.t1 PF06320 - KOG3390 - - - AT2G30330.1 - GCN5L1 family protein Cre12.g496500 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g12654.t1 PF12499 - - - - - - - - Cre11.g468650 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 14 - - g11767.t1,Cre11.g468650.t1.1 - - - - - - - - - Cre12.g501050 ALD6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Aldehyde/histidinol dehydrogenase - g12555.t1,Cre12.g501050.t1.1,ALD6 - - - - - - - - - Cre03.g203000 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 9 - - g4259.t1 - - - - - - - - - Cre06.g310400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g7182.t1 - - - - - - - - - Cre08.g383101 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g9020.t1 - - - - - - - - - Cre04.g219650 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 14 - - g4787.t1,Cre04.g219650.t1.1 - - - - - - - - - Cre16.g686250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g16369.t1 PF00249 PTHR10641 KOG0048 - - - AT1G09540.1 ATMYB61,MYB61 myb domain protein 61 Cre12.g486900 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 2 - - g12252.t1,Cre12.g486900.t1.1 PF01207 PTHR11082,PTHR11082:SF5 KOG2335 1.-.-.- K05545 GO:0008033,GO:0017150,GO:0050660,GO:0055114 AT5G67220.1 - FMN-linked oxidoreductases superfamily protein Cre08.g370650 PGL2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g8685.t1,Cre08.g370650.t1.1,PGL2 - PTHR11054 KOG3147 - - - AT1G13700.1 PGL1 6-phosphogluconolactonase 1 Cre01.g020650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 13 - - g478.t1 - - - - - - - - - Cre11.g478950 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g11889.t1,Cre11.g478950.t1.1 PF04615 PTHR14150 KOG2172 - K14567 GO:0006364,GO:0032040 AT4G02400.1 - U3 ribonucleoprotein (Utp) family protein Cre02.g080900 PRX4 - 0 1 1.0 nan 0 1 1.0 nan M n - - Peroxiredoxin, type II Peroxiredoxin Type II, thioredoxin dependent peroxidase, N-terminal sequence predicted as a chloroplast targeting signal BUT the protein is more closely related to mitochondrial type II PRX from Arabidopsis (AtPRXIIF) g1479.t1,Cre02.g080900.t1.1,PRX4 PF08534 PTHR10430 KOG0541 - - GO:0016491 AT3G06050.1 ATPRXIIF,PRXIIF peroxiredoxin IIF Cre02.g097500 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 18 - - g1984.t1 PF07714 PTHR23257 KOG0192 2.7.11.1 K04367 GO:0004672,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre01.g033550 PDI2 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 7 Protein disulfide isomerase Protein Disulfide Isomerase 2 (CrPDI2), PDI-D subfamily, PMID: 16143836, circadian expressed, possible targeting to the ER. g759.t1,Cre01.g033550.t1.1 PF07749,PF00085 PTHR18929 - - - GO:0005783,GO:0045454 AT2G47470.1 ATPDI11,ATPDIL2-1,MEE30,PDI11,UNE5 thioredoxin family protein Cre06.g294876 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6826.t1 - - - - - - - - - Cre10.g423050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g10465.t1,Cre10.g423050.t1.1 PF00078 PTHR10178,PTHR10178:SF14 - - - GO:0003723,GO:0003964,GO:0006278 ATMG00860.1 - DNA/RNA polymerases superfamily protein Cre02.g081050 FAP24 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 5 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g1482.t1,Cre02.g081050.t1.1 - - - - - - AT1G65900.1 - - Cre10.g457100 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g11215.t1,Cre10.g457100.t1.1 PF00881 PTHR23026:SF65,PTHR23026 - - - GO:0016491 - - - Cre15.g638650 CLR3,OPR81,CLR20,RAP16 - 0 1 1.0 nan 0 1 1.0 nan C n - - RAP-domain containing protein RAP-domain containing protein. The RNA-binding RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Previously annotated as CLR3 and CLR20, though the mappi g15438.t1,CLR20,CLR3,RAP16 PF08373 - - - - - - - - Cre17.g728483 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g17608.t1,Cre17.g728500.t1.2, g17608.t2,Cre17.g728500.t2.1 - - - - - - - - - Cre03.g175050 TRP13 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 8 Transient receptor potential ion channel protein Transient potential receptor channel g3615.t1,TRP13 - - - - - - - - - Cre13.g581150 NAT30 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14274.t1,Cre13.g581150.t1.1,NAT30 PF00583 PTHR23091:SF34,PTHR23091 - - - GO:0008080,GO:0008152 AT2G39000.1 - Acyl-CoA N-acyltransferases (NAT) superfamily protein Cre09.g392729 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g9732.t1,Cre02.g128550.t1.1 PF00551,PF02911 PTHR11138 KOG3076 - - GO:0009058,GO:0016742 AT1G66520.1 pde194 formyltransferase, putative Cre07.g324800 SNE6 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 7 - - g7502.t1,Cre07.g324800.t1.1,SNE6 PF01370 PTHR10366,PTHR10366:SF9 KOG1502 - - GO:0003824,GO:0044237,GO:0050662 AT1G09510.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre17.g702250 TRP4 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - Transient receptor potential ion channel protein TRP-like ion channel protein. Predicted 5TMH (trans-membrane-helices) g17025.t1,TRP4 PF00023 PTHR10582 - - K04975 GO:0005515 AT5G02620.1 ANK1,ATANK1 ankyrin-like1 Cre17.g718850 RPA70A,RFA1 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Replication protein A, 70 kDa DNA-binding subunit Homologous to eukaryotic RPA 70 kDa subunit; RP-A; RF-A; Replication factor-A protein 1; Single-stranded DNA-binding protein; Chlamydomonas has at least two homologues of RPA70. Previously annotated as RPA70A g17396.t1,RFA1,RPA70A PF04057,PF08646,PF01336 PTHR23273 KOG0851 - K07466 GO:0003677,GO:0005634,GO:0006260,GO:0003676 AT2G06510.1 ATRPA1A,ATRPA70A,RPA1A,RPA70A replication protein A 1A Cre16.g690300 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g16203.t1,Cre16.g690300.t1.1 - - - - - - - - - Cre01.g013400 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 13 - - g328.t1 PF10510 PTHR21072 - - - - AT3G07180.1 - GPI transamidase component PIG-S-related Cre10.g461250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g11308.t1 PF00004 PTHR23078 KOG0741 3.6.4.6 K06027 GO:0005524 AT4G04910.1 NSF AAA-type ATPase family protein Cre01.g018450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g435.t1 - - - - - - - - - Cre13.g571450 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14051.t1, g14051.t2 PF00173 PTHR10281 - - - GO:0020037 AT2G24940.1 AtMAPR2,MAPR2 membrane-associated progesterone binding protein 2 Cre07.g326400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g7590.t1,Cre07.g326400.t1.1 PF04893 PTHR21236,PTHR21236:SF1 KOG2946 - - GO:0016020 AT2G18840.1 - Integral membrane Yip1 family protein Cre01.g025350 FAP235 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g582.t1,Cre01.g025350.t1.1 PF03703 - - - - - - - - Cre04.g222700 ABC4 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g4859.t1,Cre04.g222700.t1.1,ABC4 PF00385,PF00005 PTHR19211,PTHR19211:SF5 KOG0062 - K03235 GO:0005524,GO:0016887 AT3G54540.1 ATGCN4,GCN4 general control non-repressible 4 Cre17.g735021 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 15 - - g17785.t2, g17785.t1 - - KOG0493 - - - - - - Cre03.g197800 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g4097.t1 PF01843 PTHR13140,PTHR13140:SF207 - - - - AT1G04160.1 ATXIB,XI-8,XI-B,XIB myosin XI B Cre10.g454450 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g11156.t2, g11156.t1 PF00481 PTHR13832,PTHR13832:SF164 KOG0698 - - GO:0003824 AT1G09160.1 - Protein phosphatase 2C family protein Cre04.g224700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g4904.t1,Cre04.g224700.t1.1,NRT1.1 PF00854 PTHR11654 KOG1237 - - GO:0005215,GO:0006857,GO:0016020 AT5G01180.1 ATPTR5,PTR5 peptide transporter 5 Cre05.g239600 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 15 - - g5526.t2, g5526.t1,Cre05.g239600.t1.1 - - - - - - - - - Cre13.g587650 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g14416.t1,Cre13.g587650.t1.1 - PTHR21174 - - - - - - - Cre14.g623800 NAT6 - 0 1 1.0 nan 0 1 1.0 nan O n - 3 - - g15033.t1,NAT6 PF00583 PTHR23091:SF3,PTHR23091 KOG3139 2.3.1.88 K00670 GO:0008080,GO:0008152 AT2G38130.1 ATMAK3 Acyl-CoA N-acyltransferases (NAT) superfamily protein Cre17.g736550 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g17816.t1 - - - - - - - - - Cre16.g664750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g16047.t1 - PTHR15651,PTHR15651:SF7 - - - - AT1G51350.1 - ARM repeat superfamily protein Cre02.g075150 RPB2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - DNA-directed RNA polymerase II, 135 kDa polypeptide DNA-directed RNA polymerase II 135 kDa polypeptide; RPOB373aa RPB373aa; contains an intein spliced out post-translationally [see PMID: 97248673]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 183 g1344.t2,RPB2, g1344.t1,Cre02.g075150.t1.1,RPB2 PF04567,PF04566,PF04561,PF04565,PF04563,PF04560,PF00562 PTHR20856:SF7,PTHR20856 KOG0214 2.7.7.6 K03010 GO:0003677,GO:0003899,GO:0006351,GO:0032549 AT4G21710.1 EMB1989,NRPB2,RPB2 DNA-directed RNA polymerase family protein Cre10.g449250 KAP1,FLA3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 Kinesin-II-associated protein Kinesin-associated protein; probable non-motor subunit of kinesin-II, the anterograde motor for intraflagellar transport. Armadillo homolog. Previously annotated as KAP; also known as FLA3 g11046.t1,Cre10.g449250.t1.1,FLA3,KAP1 PF05804 PTHR15605,PTHR15605:SF2 KOG1222 - - GO:0005871,GO:0019894 - - - Cre07.g327750 TRP3 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 Transient receptor potential ion channel protein Homology to osmosensitive TRP channel g7624.t1,TRP3 - PTHR23151,PTHR23151:SF9 - - - - - - - Cre02.g086250 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1598.t1 - - - - - - - - - Cre16.g671937 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g16698.t1,Cre01.g064950.t1.1 PF05990 - - - - - - - - Cre13.g579950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g14248.t1,Cre13.g579950.t1.1 - PTHR12760 KOG3060 - - - AT5G28220.1 - Protein prenylyltransferase superfamily protein Cre05.g241050 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g5558.t1,Cre05.g241050.t1.1 - - - - - - - - - Cre02.g146200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g2536.t1 PF00076 PTHR22792 - - - GO:0003676 - - - Cre12.g484500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g12026.t1,Cre12.g484500.t1.1 PF00023 PTHR24188 KOG4214 - - GO:0005515 AT5G12320.1 - ankyrin repeat family protein Cre02.g111500 - 0 29 1.0 1.0 0 29 1.0 1.0 O n - 16 - - g2294.t2, g2294.t1 PF00069 PTHR24056,PTHR24056:SF177 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT3G48750.1 CDC2,CDC2A,CDC2AAT,CDK2,CDKA1,CDKA;1 cell division control 2 Cre07.g317650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g7345.t1 - - - - - - AT5G24750.1 - UDP-Glycosyltransferase superfamily protein Cre07.g316526 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 18 - - g7318.t1,Cre07.g316526.t1.1 PF00561,PF04083 PTHR11005 - - - GO:0006629 AT5G14180.1 MPL1 Myzus persicae-induced lipase 1 Cre17.g745197 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g18020.t1 - - - - - - - - - Cre12.g552001 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g13499.t1,Cre12.g552001.t1.1 PF01435 PTHR22726 - - - GO:0004222,GO:0006508,GO:0016020 AT5G51740.1 - Peptidase family M48 family protein Cre07.g337950 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g7863.t1,Cre07.g337950.t1.1 - - - - - - - - - Cre06.g288600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g6698.t1 - - - - - - - - - Cre10.g458100 YEE1 - 0 1 1.0 nan 0 1 1.0 nan C n - 18 Membrane protein Contains DUF395 domain, found in YeeE and YedE from Escherichia coli. These proteins are integral membrane proteins of unknown function. Many of these proteins contain two homologous regions that are represented by this entry. This region contains several g11236.t1,Cre10.g458100.t1.1,YEE1 PF04143 - - - - - - - - Cre11.g467545 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11475.t1,Cre44.g787933.t1.1,Cre44.g787933.t1.2 - - - - - - - - - Cre03.g203850 ATS1 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 ATP-sulfurylase ATP-sulfurylase; catalyses the synthesis of adenosine-phosphosulphate (APS) from ATP and inorganic sulphate; Genbank entry U57088 g4239.t1,Cre03.g203850.t1.1,ATS1 PF01747 PTHR11055 KOG0636 2.7.7.4 K00958 GO:0000103,GO:0004781 AT1G19920.1 APS2,ASA1 Pseudouridine synthase/archaeosine transglycosylase-like family protein Cre06.g297750 SPL3 - 0 1 1.0 nan 0 1 1.0 nan O n - - SF3A3 splicing factor 3a, subunit 3 SF3A3 splicing factor 3a, subunit 3. The splicing factor 3a heterotrimer includes subunits 1, 2 and 3 and is necessary for the in vitro conversion of 15S U2 snRNP into an active 17S particle that performs pre-mRNA splicing. Subunit 2 interacts with subun g6887.t1,Cre06.g297750.t1.1,SPL3 PF12108,PF11931 PTHR12786,PTHR12786:SF2 KOG2636 - K12827 - AT5G06160.1 ATO splicing factor-related Cre12.g523700 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 - - g12895.t1,Cre12.g523700.t1.1 - - - - - - - - - Cre16.g660050 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 - - g15944.t1 PF01169 PTHR12608 KOG2881 - - GO:0016020 AT4G13590.1 - Uncharacterized protein family (UPF0016) Cre10.g441900 FAP145 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein weakly similar to Translin-Associated Factor X (Tsnax) Interacting Protein 1 Found in the flagellar proteome [PMID: 15998802] g10873.t1 - - - - - - - - - Cre14.g610250 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 17 - - g14709.t1,Cre14.g610250.t1.1 - - - - - - - - - Cre12.g534151 EEP9 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 11 - - g13137.t1,Cre12.g534150.t1.3,EEP9 PF03372 PTHR22748 - 4.2.99.18 K10772 GO:0004518,GO:0006281 AT4G36050.2 - endonuclease/exonuclease/phosphatase family protein Cre06.g263700 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g5925.t1 - - - - - - - - - Cre17.g736700 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g17820.t1,Cre17.g736700.t1.1 - - - - - - - - - Cre12.g520173 - 0 12 1.0 1.0 0 12 1.0 1.0 C n - 12 - - g12818.t1,Cre12.g520173.t1.1 - - - - - - AT5G35970.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre09.g401478 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g9992.t1,Cre02.g139150.t1.1 PF03232 - KOG4061 - - GO:0006744,GO:0055114 - - - Cre17.g706800 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17126.t1,Cre17.g706800.t1.1 PF00857 PTHR11080 KOG4003 - - GO:0003824,GO:0008152 AT3G16190.1 - Isochorismatase family protein Cre10.g440050 SNE12,CSP41A,CSP41a - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 NAD-dependent epimerase/dehydratase NAD-dependent epimerase/dehydratase, possibly with UDP-glucose 4-epimerase activity. Based on homology with an Arabidopsis protein, this is putatively a chloroplast RNA binding protein cp ribosome-associated RAP41 chloroplast stem-loop-binding protein an g10833.t1,Cre10.g440050.t1.1,CSP41a,SNE12 PF01370 PTHR10366,PTHR10366:SF111 KOG1430 - - GO:0003824,GO:0044237,GO:0050662 AT3G63140.1 CSP41A chloroplast stem-loop binding protein of 41 kDa Cre12.g509700 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g12357.t1 - - - - - - - - - Cre14.g628600 CYA13 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 9 - - g15141.t1,CYA13 PF00211 PTHR24790,PTHR24790:SF7 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre02.g084250 PPP7 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g1554.t2,PPP7, g1554.t1,Cre02.g084250.t1.1,PPP7 PF00481 PTHR13832,PTHR13832:SF143 KOG0698 - - GO:0003824 AT5G53140.1 - Protein phosphatase 2C family protein Cre09.g389300 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g9512.t1 PF00560 PTHR10588:SF7,PTHR10588 KOG1644 - - GO:0005515 AT5G19680.1 - Leucine-rich repeat (LRR) family protein Cre02.g090500 HEL10 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g1690.t1,HEL10 PF00271,PF00270 PTHR24772,PTHR24772:SF101 KOG0328 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT4G00660.1 ATRH8,RH8 RNAhelicase-like 8 Cre02.g113900 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g2351.t1 - - - - - - - - - Cre14.g616950 SELT1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 3 Selenoprotein T Selenoprotein T. Conserved in plants and animals; has Selenocysteine in position 61 (replaced by Cys in plants). Previously annotated as SelTsee Novoselov et al. 2002 [PMID: 12110581] g14863.t1,SELT1 PF10262 PTHR13544 - - - GO:0008430,GO:0045454 AT5G58640.1 - Selenoprotein, Rdx type Cre01.g068377 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 1 - - g1281.t1,Cre23.g766150.t1.1 PF03914 PTHR12455 - - - - AT2G17250.1 EMB2762 CCAAT-binding factor Cre07.g336600 AMD1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 Alpha-1,2-mannosidase Alpha-1,2-mannosidase; member of the O-glycoside hydrolases family 47; members hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety g7833.t2,AMD1, g7833.t1,AMD1 PF01532 PTHR11742,PTHR11742:SF7 KOG2431 3.2.1.113 K01230 GO:0004571,GO:0005509,GO:0016020 AT1G30000.1 MNS3 alpha-mannosidase 3 Cre08.g384864 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g9057.t1,Cre08.g384864.t1.1 PF00018 - - - - GO:0005515 AT2G07360.1 - SH3 domain-containing protein Cre13.g581300 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g14277.t1 - - - - - - - - - Cre13.g606962 - 0 3 1.0 1.0 0 3 1.0 1.0 - n - 15 - - g14634.t1,Cre13.g606956.t2.1, g14634.t2,Cre13.g606956.t1.2 - - - - - - - - - Cre07.g346698 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g8068.t1, g8068.t2 PF12499 - - - - - - - - Cre07.g334600 CGL20 - 0 1 1.0 nan 0 1 1.0 nan O Y - 4 Predicted protein Conserved expressed protein of unknown function g7791.t1,Cre07.g334600.t1.1 - - - - - - - - - Cre02.g099300 ANK21 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g2020.t1,Cre02.g099300.t1.1,ANK21 PF00023 PTHR24198:SF302,PTHR24198 KOG4214 - - GO:0005515 AT2G03430.1 - Ankyrin repeat family protein Cre06.g248800 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g5573.t1,Cre06.g248800.t1.1 - - - - - - AT2G01640.1 - - Cre14.g627000 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 11 - - g15099.t1 - - - - - - - - - Cre03.g199250 CYG51 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - - Adenylate/guanylate cyclase Protein domain similar to guanylate cyclase 1, soluble, beta 2 [Homo sapiens] g4343.t2, g4343.t1 PF00211 PTHR11920,PTHR11920:SF119 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre06.g303536 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 - - g7029.t1,Cre06.g303550.t1.3 - - - - - - - - - Cre02.g074150 COP5 - 0 1 1.0 nan 0 1 1.0 nan O n - - Chlamoypsin, light-gated proton channel rhodopsin Chlamyopsin 5, sensory rhodopsin with histidine kinase domain; has histidine kinase, response regulator receiver domains like a two-component hybrid sensor and regulator [PMID: 15143209] g1315.t1,COP5, g1315.t2,COP5 PF00512,PF00072,PF01036,PF02518,PF00211 PTHR24423 KOG0519 2.7.13.3 K02486 GO:0000155,GO:0007165,GO:0016020,GO:0000156,GO:0000160,GO:0006355,GO:0005216,GO:0006811,GO:0005524,GO:0009190,GO:0016849,GO:0035556 AT2G17820.1 AHK1,ATHK1,HK1 histidine kinase 1 Cre12.g522150 FAP194 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g12860.t1 - PTHR23314 - - - - AT1G23030.1 - ARM repeat superfamily protein Cre07.g346525 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8063.t1 - - - - - - - - - Cre08.g367200 VPS52 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Subunit of GARP complex Hypothetical Conserved Protein. Similar to VPS52/SAC2, a component of the GARP (Golgi-associated retrograde protein) complex g8604.t1,VPS52 PF04129 PTHR14190,PTHR14190:SF6 KOG1961 - - - AT1G71270.1 ATVPS52,POK,TTD8 Vps52 / Sac2 family Cre09.g407200 POD1 - 0 6 1.0 1.0 0 6 1.0 1.0 C n upregulated 2 - - g10096.t1,Cre09.g407200.t1.1,POD1 PF01266 PTHR10668:SF5,PTHR10668 KOG4254 - - GO:0016491 AT1G57770.1 - FAD/NAD(P)-binding oxidoreductase family protein Cre15.g638401 OPR76,RAP12,CLR10 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g15445.t1,CLR10,RAP12 PF08373 - - - - - - - - Cre13.g589150 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g14453.t1 - - - - - - - - - Cre12.g530650 GLN2 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 15 Glutamine synthetase Glutamine synthetase (EC 6.3.1.2), chloroplast precursor (Glutamate--ammonia ligase) (GS2), CO2-responsive gene; identical to GLNA2_CHLRE cDNA [SwissProt Q42689), PMID: 8938407]; arranged head-to-head with another glutamine synthetase gene. GLN3; GLN2 & G g13061.t1, g13061.t2 PF03951,PF00120 PTHR20852:SF14,PTHR20852 KOG0683 - - GO:0004356,GO:0006542,GO:0006807 AT5G16570.1 GLN1;4 glutamine synthetase 1;4 Cre03.g172650 BLD2,TUE1 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Epsilon tubulin Epsilon tubulin (TUE) [gi:20514387, PMID: 12429830], corresponds to BLD2 locus on linkage group III g3560.t1,Cre03.g172650.t1.1,TUE1 PF03953,PF00091 PTHR11588:SF13,PTHR11588 KOG1374 - K10391 GO:0003924,GO:0005525,GO:0006184,GO:0043234,GO:0051258,GO:0005874,GO:0007017 AT1G20010.1 TUB5 tubulin beta-5 chain Cre10.g423550 ATA2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 17 - - g10476.t1,ATA2 PF01212 PTHR10289 KOG1368 4.1.2.5 K01620 GO:0006520,GO:0016829 AT3G04520.1 THA2 threonine aldolase 2 Cre03.g176550 PRM5 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 2 - - g3648.t1,PRM5 PF05185 PTHR10738 KOG0822 2.1.1.125 K02516 GO:0005737,GO:0008168 AT4G31120.1 ATPRMT5,PRMT5,SKB1 SHK1 binding protein 1 Cre06.g284850 - 0 20 1.0 1.0 0 20 1.0 1.0 O n - 10 - - g6623.t1, g6623.t2 PF04821 PTHR22940:SF4,PTHR22940 - - K03155 - AT5G52910.1 ATIM timeless family protein Cre10.g464700 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g11386.t1,Cre10.g464700.t1.1 - - - - - - - - - Cre13.g607100 CYG6 - 0 11 1.0 1.0 0 11 1.0 1.0 M n - 17 Adenylate/guanylate cyclase Internal domains similar to Guanylyl cyclase, isoform C [Drosophila melanogaster] g14638.t1,Cre13.g607100.t1.1 PF00211 PTHR11920:SF137,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre07.g352300 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g8194.t1,Cre07.g352300.t1.1 PF00588 PTHR12029,PTHR12029:SF27 - - - GO:0003723,GO:0006396,GO:0008173 - - - Cre03.g155100 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 11 - - g3162.t1,Cre03.g155100.t1.1 - - - - - - - - - Cre16.g651000 RPA70B,RFA3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 Replication protein A, 70 kDa DNA-binding subunit Homologous to eukaryotic RPA 70 kDa subunit; RP-A; RF-A; Replication factor-A protein 1; Single-stranded DNA-binding protein; Chlamydomonas has at least two homologues of RPA70. Previously annotated as RPA70B g15749.t1,Cre16.g651000.t1.1,RFA3,RPA70B PF04057,PF08646 PTHR23273 KOG0851 - K07466 GO:0003677,GO:0005634,GO:0006260 AT5G61000.1 ATRPA70D,RPA70D Replication factor-A protein 1-related Cre01.g029600 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 13 - - g673.t1,Cre01.g029600.t1.1 PF05042 - - - - - AT4G26740.1 ATPXG1,ATS1,CLO1 seed gene 1 Cre06.g296936 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g6869.t1 - - - - - - - - - Cre08.g366150 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 9 - - g8580.t1 - - - - - - AT3G50590.1 - Transducin/WD40 repeat-like superfamily protein Cre03.g186100 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g3856.t1 - PTHR12499 - - - - - - - Cre12.g524700 HAD4 - 1 41 1.0 1.0 1 41 1.0 1.0 O n upregulated 18 - - g12917.t1,Cre12.g524700.t1.1,HAD4 PF00702 PTHR12725:SF15,PTHR12725 KOG3109 - - GO:0003824,GO:0008152 AT5G59480.1 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre01.g007600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g196.t2, g196.t1 PF02431 - - - - GO:0016872,GO:0042398 AT1G53520.1 - Chalcone-flavanone isomerase family protein Cre03.g169650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 3 - - g3493.t1 - - - - - - - - - Cre06.g266100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 12 - - g5973.t1 PF00069 PTHR24347,PTHR24347:SF115 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT2G17520.1 ATIRE1-2,IRE1-2,IRE1A Endoribonuclease/protein kinase IRE1-like Cre01.g006950 FBA1 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 4 Fructose-1,6-bisphosphate aldolase Fructose-1,6-bisphosphate Aldolase; Aldehyde-lyase (EC 4.1.2.13); may be plastidic based on N-terminal extension, but greater sequence similarity to cytosolic forms; glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructos g182.t2, g182.t1 PF00274 PTHR11627 KOG1557 4.1.2.13 K01623 GO:0004332,GO:0006096 AT3G52930.1 - Aldolase superfamily protein Cre13.g588350 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - - - - g14432.t1,Cre13.g588350.t1.1 - - - - - - - - - Cre06.g263550 LCI7 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 16 R53.5-related protein Identified in the flagellar and basal body proteome [PMID: 15137946] and upregulated by deflagellation; putative R53.5-related protein. Low-CO2 and high-light inducible gene LCI7 revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]. Acclima g5921.t1,Cre06.g263550.t1.1 - - KOG4498 - - - AT2G37240.1 - Thioredoxin superfamily protein Cre11.g467584 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g11514.t1,Cre18.g749250.t1.1,Cre18.g749250.t1.2 PF00069 PTHR23257:SF368,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT2G40860.1 - protein kinase family protein / protein phosphatase 2C ( PP2C) family protein Cre11.g467580 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 - - g11510.t1,Cre18.g749400.t1.1 - - - - - - - - - Cre11.g467582 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g11512.t1 - - - - - - - - - Cre11.g467583 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g11513.t1,Cre18.g749300.t1.1,Cre18.g749300.t1.2 - PTHR24359:SF89,PTHR24359 - - - - - - - Cre16.g659667 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 12 - - g15935.t1, g15935.t2 - - - - - - - - - Cre04.g227200 - 0 1 1.0 nan 0 1 1.0 nan SP n - 17 - - g4971.t1 - - - - - - - - - Cre11.g467588 - 0 1 1.0 nan 0 1 1.0 nan O n - - Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK4 g11518.t1,Cre18.g749150.t1.1,Cre18.g749150.t1.2 PF00069 PTHR23257:SF368,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT2G40860.1 - protein kinase family protein / protein phosphatase 2C ( PP2C) family protein Cre08.g384000 CYP771A1,CYP26 - 0 7 1.0 1.0 0 7 1.0 1.0 M n downregulated 16 Cytochrome P450, CYP197 superfamily Cytochrome P450, CYP197 superfamily. Previously annotated as CYP771A1 g9038.t1,CYP26 PF00067 PTHR24286 - - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT2G14100.1 CYP705A13 cytochrome P450, family 705, subfamily A, polypeptide 13 Cre13.g564100 PTK2 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n downregulated - Putative tyrosine kinase Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g13880.t1,PTK2 PF00069,PF07714 PTHR26392 - - - GO:0004672,GO:0005524,GO:0006468 AT4G38470.1 - ACT-like protein tyrosine kinase family protein Cre02.g095294 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g1934.t1,Cre02.g095294.t1.1 PF00092 PTHR14187:SF34,PTHR14187 - - - GO:0005515 AT2G38970.1 - Zinc finger (C3HC4-type RING finger) family protein Cre12.g492550 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g12099.t2, g12099.t1 - - - - - - - - - Cre10.g421150 - 0 16 1.0 1.0 0 16 1.0 1.0 SP n - 6 - - g10423.t1 PF01822 - - - - - - - - Cre16.g693819 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g15601.t1,Cre16.g693819.t1.1 PF04720 - - - - - AT1G77145.1 - Protein of unknown function (DUF506) Cre01.g025600 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 12 - - g587.t1,Cre01.g025600.t1.1 - - - - - - - - - Cre13.g590700 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 - - g14486.t1 PF02582 PTHR16255 - - - - AT5G13610.1 - Protein of unknown function (DUF155) Cre16.g678300 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 15 - - g16548.t1 - - - - - - - - - Cre08.g374150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 6 - - g8816.t1 - - - - - - - - - Cre03.g181650 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g3765.t1,Cre03.g181650.t1.1 PF07574 - - - - - AT5G21140.1 emb1379 embryo defective 1379 Cre10.g430650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g10635.t1,Cre10.g430650.t1.1 - - - - - - - - - Cre14.g613200 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 1 - - g14777.t1 PF07683,PF02492 PTHR13748,PTHR13748:SF4 - - - - AT1G80480.1 PTAC17 plastid transcriptionally active 17 Cre05.g234666 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g5385.t1,Cre24.g768650.t2.1, g5385.t2,Cre24.g768650.t1.1 - - - - - - - - - Cre06.g255600 EZY24 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - EZY1-like protein Highly similar to zygote-specific protein (EZY1), which localizes to chloroplast nucleoids and belongs to mating type-linked gene cluster [PMID: 8374951]; Genbank entry L20945. May be hard to distinguish by genetics and EST mapping g5744.t1,EZY24 - - - - - - - - - Cre12.g557252 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g13385.t1 PF04727 PTHR12771,PTHR12771:SF3 - - - GO:0005856,GO:0006909 AT3G03610.1 - ELMO/CED-12 family protein Cre03.g200431 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g4370.t1,Cre19.g752100.t1.1,Cre19.g752100.t1.2 - - - - - - AT5G11270.1 OCP3 overexpressor of cationic peroxidase 3 Cre12.g491600 PTB1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 17 Sodium/phosphate symporter Phosphate transporter [gi:21218056], similar to yeast Pho89, Neurospora PHO4 probable Na+/Pi symporter. Knockout confers arsenate resistance [PMID: 12826625] g12153.t1,PTB1 PF01384 PTHR11101:SF7,PTHR11101 KOG2493 - - GO:0005315,GO:0006817,GO:0016020 AT3G26570.1 ORF02,PHT2;1 phosphate transporter 2;1 Cre13.g570851 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 3 - - g14040.t1,Cre13.g570850.t1.2 - - - - - - - - - Cre01.g000650 AMX2 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 15 Copper amine oxidase Possibly peroxisomal; contains PTS1 canonical sequence g16.t1,AMX2 PF01179,PF02728,PF02727 PTHR10638,PTHR10638:SF12 KOG1186 - - GO:0005507,GO:0008131,GO:0009308,GO:0048038,GO:0055114 AT2G42490.1 - Copper amine oxidase family protein Cre06.g261950 ANK11 - 0 1 1.0 nan 0 1 1.0 nan O n - - Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g5886.t1,Cre06.g261950.t1.1,ANK11 PF00023 PTHR24166:SF272,PTHR24166 KOG4214 - - GO:0005515 AT5G12320.1 - ankyrin repeat family protein Cre03.g146627 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g2996.t1,Cre01.g062050.t1.1 PF00120 PTHR20852,PTHR20852:SF18 - - - GO:0004356,GO:0006807 AT3G53180.1 - glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases Cre07.g342250 PFD2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 Prefoldin molecular chaperone, subunit 2 Prefoldin molecular chaperone, subunit 2; KE2 Family protein; similar to protein from Oryza sativa ABA94315; stabilizes polypeptide chain prior to folding within chaperonin g7941.t1,Cre07.g342250.t1.1,PFD2 PF01920 PTHR13303 KOG4098 - - GO:0006457,GO:0016272,GO:0051082 AT3G22480.1 PDF2 prefoldin 2 Cre10.g425700 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g10521.t1,Cre10.g425700.t1.1 - - - - - - - - - Cre02.g117676 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g2440.t1 - - - - - - - - - Cre09.g388171 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 9 - - g9606.t1,Cre02.g122800.t1.1,Cre02.g122800.t1.2 - PTHR12905 - - - - - - - Cre12.g493600 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g12078.t1 - - - - - - - - - Cre13.g564812 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g13896.t1,Cre13.g564840.t3.1, g13896.t3,Cre13.g564840.t2.1, g13896.t2,Cre13.g564840.t1.3 - - - - - - - - - Cre01.g032950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g744.t1,Cre01.g032950.t1.1 - - - - - - - - - Cre10.g424250 FAP90 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG13 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400] g10490.t1,Cre10.g424250.t1.1 - - - - - - - - - Cre02.g110900 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g2277.t1 - - - - - - - - - Cre12.g559555 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g13334.t1 PF02450 PTHR11440,PTHR11440:SF15 - - - GO:0004607,GO:0006629 AT3G44830.1 - Lecithin:cholesterol acyltransferase family protein Cre12.g559550 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 - - g13331.t1,Cre12.g559550.t1.1 - - - - - - - - - Cre03.g209617 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g4454.t1,Cre19.g755750.t1.1 - - - - - - - - - Cre08.g379500 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 15 - - g8934.t1 PF07714 PTHR23257:SF347,PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre03.g182300 PGM7 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g3778.t1,PGM7 PF00300 PTHR23029 KOG0235 - - - AT3G05170.1 - Phosphoglycerate mutase family protein Cre17.g737200 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g17831.t1,Cre17.g737200.t1.1 - - - - - - - - - Cre03.g182900 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g3791.t1,Cre03.g182900.t1.1 PF01956 PTHR20917 KOG3312 - - GO:0016020 AT5G06660.1 - Protein of unknown function DUF106, transmembrane Cre12.g549300 MIP1 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 Aquaporin, glycerol transport activity Related to plant TIP, aquaporin, major intrinsic protein g13562.t1,Cre12.g549300.t1.1,MIP1 PF00230 PTHR19139,PTHR19139:SF49 KOG0223 - K09866 GO:0005215,GO:0006810,GO:0016020 AT2G36830.1 GAMMA-TIP,GAMMA-TIP1,TIP1;1 gamma tonoplast intrinsic protein Cre12.g499950 CPL18 - 0 4 1.0 1.0 0 4 1.0 1.0 O Y - 9 - - g12578.t1 PF05057 PTHR12482 - - - - AT5G51180.1 - alpha/beta-Hydrolases superfamily protein Cre17.g741601 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g17937.t1 - - - - - - - - - Cre07.g343250 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g7984.t1 - PTHR23151:SF8,PTHR23151 - - - - - - - Cre10.g462050 PTK20 - 0 1 1.0 nan 0 1 1.0 nan O n - - Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g11327.t1,PTK20 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre06.g304950 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g7059.t1,Cre06.g304950.t1.1 - - - - - - - - - Cre14.g618000 EFH9 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14889.t1,Cre14.g618000.t1.1,EFH9 PF00036 PTHR23050:SF86,PTHR23050 KOG0027 - - - AT2G27030.3 ACAM-2,CAM5 calmodulin 5 Cre01.g018950 DHS1 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 Deoxyhypusine synthase Transfers the aminobutyl moiety of spermidine to a specific lysine residue of eIF5A, forming deoxyhypusine (PMID: 17476569); deoxypusine will then be hydroxylated to generate the unusual aminoacid hypusine; an important mechanism controlling cell prolifer g445.t1,Cre01.g018950.t1.1 PF01916 PTHR11703 KOG2924 2.5.1.46 K00809 GO:0008612 AT5G05920.1 DHS,EDA22 deoxyhypusine synthase Cre11.g481833 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g11963.t1 - - - - - - - - - Cre10.g438300 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 17 - - g10796.t1,Cre10.g438300.t1.1 - - - - - - - - - Cre06.g293516 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g6798.t1 - PTHR22939,PTHR22939:SF1 - - - - AT5G40200.1 DegP9 DegP protease 9 Cre07.g343789 - 0 1 1.0 nan 0 1 1.0 nan - n - 11 - - g7998.t1,Cre07.g343789.t1.1 - - - - - - - - - Cre06.g302050 BGS5,GTR12 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 13 1,3-beta-D-glucan synthase 1,3-beta-D-glucan synthase and glycosyl transferase. Previously annotated as GTR12 g6990.t1,Cre06.g302050.t1.1,BGS5,GTR12 PF02364 PTHR12741 - - - GO:0000148,GO:0003843,GO:0006075,GO:0016020 AT5G13000.1 ATGSL12,gsl12 glucan synthase-like 12 Cre03.g199759 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g4364.t1,Cre19.g751850.t1.1,Cre19.g751850.t1.2, g4364.t2,Cre19.g751850.t2.1 PF01237 PTHR10972 KOG2209 - - - AT5G02100.1 ORP3A,UNE18 Oxysterol-binding family protein Cre12.g536301 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g13188.t1 - - - - - - - - - Cre03.g199750 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g4332.t1,Cre03.g199750.t1.1 - PTHR13253,PTHR13253:SF10 - - - - - - - Cre08.g365000 CSE1 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 Predicted protein of CSE family - g8546.t1,CSE1 PF07887 - - - - - - - - Cre02.g089311 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g1666.t1 PF00328 - KOG3720 - - GO:0003993 - - - Cre12.g541350 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 9 - - g13747.t1 PF00566 PTHR16110:SF1,PTHR16110 - - - GO:0005097,GO:0005622,GO:0032313 AT5G57210.1 - Ypt/Rab-GAP domain of gyp1p superfamily protein Cre18.g749797 FAP281 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 14 Flagellar Associated Protein Flagellar Associated Coiled-Coil Protein; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g18112.t2,Cre31.g780550.t1.1,FAP281, g18112.t1,Cre31.g780550.t2.1,FAP281 - - - - - - - - - Cre09.g387912 FAP139 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 16 Flagellar Associated Protein, serine endopeptidase Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. Similar to IgA-specific serine peptidase g9599.t1,Cre02.g122500.t1.1 - - - - - - - - - Cre10.g423700 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g10479.t1 PF07985 - - - - - AT5G59560.1 SRR1 sensitivity to red light reduced protein (SRR1) Cre07.g350950 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 13 - - g8166.t1, g8166.t2 - - - - - - - - - Cre17.g699250 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 9 - - g16959.t1 - - - - - - - - - Cre02.g107256 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g2199.t1,Cre02.g107250.t1.3 - - - - - - - - - Cre03.g195850 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated - - - g4057.t1,Cre03.g195850.t1.1 PF01641 PTHR10173:SF0,PTHR10173 KOG0856 - - GO:0008113,GO:0055114 AT1G53670.1 ATMSRB1,MSRB1 methionine sulfoxide reductase B 1 Cre03.g152100 XRN2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 13 5\' to 3\' exoribonuclease Putative homologue of yeast 5\'-3\' exoribonucleases Xrn1p(cytoplasmic) and Rat1p (nuclear) [PMID: 18493045] g3095.t1,Cre03.g152100.t1.1,XRN2 PF03159 PTHR12341,PTHR12341:SF7 - - - GO:0003676,GO:0004527,GO:0005622 AT1G54490.1 AIN1,ATXRN4,EIN5,XRN4 exoribonuclease 4 Cre01.g029850 STK19,STPK19 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 16 Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK19 g678.t1,Cre01.g029850.t1.1,STK19,STPK19 PF00433,PF00069 PTHR24358:SF32,PTHR24358 KOG0605 - - GO:0004674,GO:0005524,GO:0006468,GO:0004672 AT1G30640.1 - Protein kinase family protein Cre09.g399738 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g9927.t1,Cre02.g137050.t1.1 - - - - - - - - - Cre02.g104500 CDJ4 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 11 Chloroplast DnaJ-like protein DnaJ-like protein, targeted to the chloroplast; contains N-terminal J-domain (pfam00226) and Ferredoxin domain (COG1141); described in Henselmann and Schroda, Diploma thesis, University of Freiburg. Characterized by Dorn et al. 2010 [PMID: 20113313] g2138.t1 PF00226 PTHR25040:SF173,PTHR25040 - - - GO:0031072 AT2G42750.1 - DNAJ heat shock N-terminal domain-containing protein Cre04.g219851 - 0 4 1.0 1.0 0 4 1.0 1.0 M n upregulated 18 - - g4794.t1,Cre04.g219850.t1.3 PF11360 - - - - - - - - Cre02.g112433 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g2316.t1,Cre02.g112450.t1.2, g2316.t2,Cre02.g112450.t2.1 - - - - - - - - - Cre06.g309600 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g7163.t1 - - - - - - - - - Cre03.g193450 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g4002.t1 - - - - - - - - - Cre12.g548550 - 0 11 1.0 1.0 0 11 1.0 1.0 O n upregulated 2 - - g13579.t2, g13579.t1 PF05742 PTHR17985 KOG2342 - - - AT4G38260.1 - Protein of unknown function (DUF833) Cre12.g511600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g12318.t1 PF02141,PF03456 PTHR13196,PTHR13196:SF13 KOG3569 - - - AT1G49040.1 SCD1 stomatal cytokinesis defective / SCD1 protein (SCD1) Cre03.g189100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g3916.t1,Cre03.g189100.t1.1 - - - - - - AT5G11680.1 - - Cre06.g252150 PGP6 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g5646.t1,Cre06.g252150.t1.1,PGP6 PF08282 PTHR21485,PTHR21485:SF12 - - K07042 - AT2G25870.1 - haloacid dehalogenase-like hydrolase family protein Cre12.g525827 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12940.t1 - - - - - - - - - Cre08.g369100 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g8649.t1,Cre08.g369100.t1.1 - - - - - - - - - Cre05.g238687 - 0 21 1.0 1.0 0 21 1.0 1.0 SP n - 17 - - g5503.t1 PF12499 - - - - - - - - Cre16.g694402 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 6 - - g15584.t1 PF00400 - - - - - AT1G11160.1 - Transducin/WD40 repeat-like superfamily protein Cre16.g694400 TGD2 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 11 Permease-like component of an ABC transporter Related to a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast g15583.t1,Cre16.g694400.t1.1 PF02470 - - - - - AT3G20320.1 TGD2 trigalactosyldiacylglycerol2 Cre06.g305050 CGL45,EEP5 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y upregulated 10 Endonuclease/exonuclease/phosphatase family protein Endonuclease/exonuclease/phosphatase family protein. Expressed protein conserved in the green lineage. Previously annotated as CGL45 g7061.t1,EEP5 PF03372 PTHR15822 KOG2756 - - - AT1G11800.1 - endonuclease/exonuclease/phosphatase family protein Cre09.g410700 MDY5,MDH5 - 0 1 1.0 nan 0 1 1.0 nan C Y - 7 NADP-dependent malate dehydrogenase, chloroplastic NADP-dependent malate dehydrogenase [EC: 1.1.1.82]; GI:19069739. Found in the flagellar proteome [PMID: 15998802] (but this may be due to similarities with MDH2). Component of the redox valve for nitrate and clustered with nitrate assimilation genes (i g10173.t1,Cre09.g410700.t1.1,MDH5 PF02866,PF00056 PTHR23382 KOG1496 - - GO:0006108,GO:0016615,GO:0055114,GO:0016491 AT5G58330.1 - lactate/malate dehydrogenase family protein Cre12.g537950 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 12 - - g13228.t1 - - - - - - - - - Cre06.g288252 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g6692.t1 - - - - - - AT4G33970.1 - Leucine-rich repeat (LRR) family protein Cre17.g703900 IFT172 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 14 Intraflagellar transport protein 172 - g17064.t1,Cre17.g703900.t1.1 PF00400 PTHR15722,PTHR15722:SF2 KOG3616 - - - AT2G43770.1 - Transducin/WD40 repeat-like superfamily protein Cre01.g017650 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 14 - - g417.t1,Cre01.g017650.t1.1, g417.t2 - - - - - - - - - Cre06.g251716 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 3 - - g5637.t1,Cre06.g251700.t1.2 - - - - - - AT2G34860.1 EDA3 DnaJ/Hsp40 cysteine-rich domain superfamily protein Cre13.g603050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g14543.t1,Cre13.g603050.t1.1 - - - - - - - - - Cre16.g666550 SOUL3 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 SOUL heme-binding protein Conserved expressed SOUL heme binding protein; N-terminal (possibly lacking in alternatively spliced form) similar to unknown cyanobacterial protein; C-terminus similar to SOUL protein, putative heme-binding domain g16085.t1,SOUL3 PF04832,PF10184 PTHR11220,PTHR11220:SF1 - - - - AT5G20140.1 - SOUL heme-binding family protein Cre16.g652600 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g15783.t2, g15783.t1 - - - - - - - - - Cre09.g395139 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - - - g9801.t1,Cre02.g131550.t1.1 PF02040 PTHR10283:SF21,PTHR10283 - - - GO:0015105,GO:0016021 - - - Cre12.g541450 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g13745.t1,Cre12.g541450.t1.1 - - - - - - - - - Cre07.g318900 DNJ2 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 10 DnaJ-like protein DnaJ-like protein 2; contains N-terminal J-domain (pfam00226) and ankyrin repeat (pfam00023); no N-terminal extension, thus probably cytosolic g7371.t1 PF00023,PF00226 PTHR24077,PTHR24077:SF69 KOG4462 - - GO:0005515,GO:0031072 AT3G04710.3 - ankyrin repeat family protein Cre03.g144124 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g2869.t1,Cre01.g056570.t1.1,Cre01.g056570.t1.2 - - - - - - - - - Cre07.g317100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g7330.t2, g7330.t1 - - - - - - - - - Cre05.g248000 CGL29 - 0 2 1.0 1.0 0 2 1.0 1.0 M Y - 18 Predicted protein Conserved protein of unknown function; significant similarity to protein of unknown function in Arabidopsis (NM_115434.2) and rice g5172.t1,Cre05.g248000.t1.1 - - - - - - AT3G55760.1 - - Cre06.g297516 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g6882.t1,Cre06.g297516.t1.1 - - - - - - - - - Cre07.g323890 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated - - - g7481.t1,Cre07.g323890.t1.1 - - - - - - - - - Cre12.g559700 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g13325.t1, g13325.t2, g13325.t3 - - - - - - - - - Cre10.g455250 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 16 - - g11173.t1,Cre10.g455250.t1.1 - - - - - - - - - Cre16.g674650 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 5 - - g16626.t1,Cre16.g674650.t1.1 PF00857 PTHR11080 KOG4044 - - GO:0003824,GO:0008152 AT3G16190.1 - Isochorismatase family protein Cre12.g488400 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 13 - - g12217.t1 PF00004 PTHR23074,PTHR23074:SF30 KOG0737 - - GO:0005524 AT2G45500.1 - AAA-type ATPase family protein Cre17.g732750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 - - g17707.t1 - - - - - - - - - Cre12.g528200 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 10 - - g13008.t1 PF08696 PTHR10887:SF14,PTHR10887 KOG1805 3.6.4.12 K10742 GO:0003677,GO:0004003,GO:0005524,GO:0006260 AT1G08840.1 emb2411 DNA replication helicase, putative Cre14.g618250 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g14894.t1 - - - - - - - - - Cre17.g722000 SOC1,MFT30 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 Major facilitator superfamily transporter Major facilitator superfamily transporter. Previously annotated as SOC1 g17467.t1,MFT30,SOC1 PF07690 PTHR24003,PTHR24003:SF276 KOG2615 - K08214 GO:0016021,GO:0055085 - - - Cre13.g579200 S6K1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 3 Ribosomal protein S6 kinase Protein kinase that phosphorylates rpS6, mediating ribosomal processivity; activation is TOR-dependent g14229.t1,Cre13.g579200.t1.1,S6K1 PF00069 PTHR24354,PTHR24354:SF83 KOG0598 - - GO:0004672,GO:0005524,GO:0006468 AT3G08720.1 ATPK19,ATPK2,ATS6K2,S6K2 serine/threonine protein kinase 2 Cre02.g087050 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 18 - - g1615.t1 - - - - - - - - - Cre12.g546100 KIN14-2,FAP125 - 0 14 1.0 1.0 0 14 1.0 1.0 C n downregulated 12 Kinesin-like motor protein, kinesin-14 (C-terminal motor) family Kinesin-like motor protein, kinesin-14 (C-terminal motor) family. Flagellar Associated Protein found in the flagellar proteome [PMID: 15998802]. Previously annotated as FAP125. Identified below gathering cut-off g13633.t1,KIN14-2, g13633.t2,KIN14-2 PF00225 PTHR24115:SF234,PTHR24115 KOG0240 - - GO:0003777,GO:0005524,GO:0007018 AT3G44050.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre06.g266416 - 0 11 1.0 1.0 0 11 1.0 1.0 C n - - - - g5980.t3,Cre06.g266425.t1.2 PF00271,PF07717,PF04408 PTHR18934:SF68,PTHR18934 KOG0920 - - GO:0003676,GO:0004386,GO:0005524 AT1G58060.1 - RNA helicase family protein Cre09.g410332 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 18 - - g10166.t1,Cre09.g410332.t1.1 PF00069 PTHR23257,PTHR23257:SF99 - - - GO:0004672,GO:0005524,GO:0006468 AT3G20200.1 - Protein kinase protein with adenine nucleotide alpha hydrolases-like domain Cre03.g163266 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 11 - - g3346.t1,Cre03.g163266.t1.1 - - - - - - - - - Cre12.g500200 MPA2 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 5 Metallophosphoesterase/metallo-dependent phosphatase - g12572.t1,MPA2 PF00149 PTHR22953 KOG1378 - - GO:0016787 AT5G50400.1 ATPAP27,PAP27 purple acid phosphatase 27 Cre09.g408428 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 8 - - g10122.t1,Cre09.g408428.t1.1 PF03151 PTHR11132 KOG1441 - - - AT3G14410.1 - Nucleotide/sugar transporter family protein Cre10.g456750 DAR1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g11208.t1,Cre10.g456750.t1.1,DAR1 - PTHR11260,PTHR11260:SF15 KOG1422 - - - AT1G75270.1 DHAR2 dehydroascorbate reductase 2 Cre12.g508050 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g12395.t1,Cre12.g508050.t1.1 PF01388,PF12047 - KOG3227 - - GO:0003677,GO:0005622 AT1G77850.1 ARF17 auxin response factor 17 Cre03.g209281 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g4451.t1,Cre19.g755650.t1.1 PF00400,PF00637 PTHR12616 KOG2066 - - - AT1G08190.1 ATVAM2,ATVPS41,VAM2,VPS41,ZIP2 vacuolar protein sorting 41 Cre09.g387060 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 17 - - g9576.t1,Cre02.g121400.t1.1 PF07690,PF00083 PTHR24064:SF144,PTHR24064 KOG0255 - - GO:0016021,GO:0055085,GO:0022857 AT1G73220.1 1-Oct,AtOCT1 organic cation/carnitine transporter1 Cre03.g172250 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g3550.t1 PF01926 PTHR11649,PTHR11649:SF5 KOG0073 - - GO:0005525,GO:0005622 AT5G39960.1 - GTP binding;GTP binding Cre09.g399252 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 14 - - g9914.t1,Cre02.g136400.t1.1,Cre02.g136400.t1.2 - - - - - - - - - Cre12.g515600 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 14 - - g12720.t2, g12720.t1 - - - - - - - - - Cre09.g399250 KIR1 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 Ketoacid isomerase-like protein Related to a series of bacterial genes among which is a putative Ketosteroid isomerase-related protein of Ralstonia; however, it is impossible to find a similarity with the well-characterized delta5-3-ketosteroid isomerase of Pseudomonas putida or Comamon g9290.t1,Cre09.g399250.t1.1,KIR1 PF07366 - - - - - - - - Cre16.g692800 AKR4 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g15621.t1,AKR4 PF00248 PTHR11732:SF74,PTHR11732 KOG1577 - - GO:0016491,GO:0055114 AT2G37790.1 - NAD(P)-linked oxidoreductase superfamily protein Cre09.g391726 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g9703.t1,Cre02.g127150.t1.1,Cre02.g127150.t1.2 - - - - - - - - - Cre17.g741450 CPN60B1 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 3 Chaperonin 60B1 GroEL/HSP60-homolog, targeted to the chloroplast; called Cpn60-beta in higher plants; shares only ~50% similarity with chloroplast-targeted CPN60A, but 79% identity with CPN60B2; higher plant Cpn60-betas may form homo- or heterooligomeric stacks (with Cpn g17934.t1,Cre17.g741450.t1.1,CPN60B1 PF00118 PTHR11353:SF8,PTHR11353 KOG0356 - - GO:0005524,GO:0044267 AT1G55490.1 CPN60B,LEN1 chaperonin 60 beta Cre07.g323450 SMM24 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g7472.t1,Cre07.g323450.t1.1,SMM24 PF05148 PTHR12787 KOG3045 - - GO:0008168 AT5G40530.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre07.g324100 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g7486.t1 - - - - - - - - - Cre06.g275550 RWP2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 2 RWP-RK transcription factor Putative RWP-RK domain transcription factor; model is very tentative g6178.t1,RWP2 PF02042 - - - - - AT5G66990.1 - RWP-RK domain-containing protein Cre06.g287150 - 0 6 1.0 1.0 0 6 1.0 1.0 O Y - 16 - - g6670.t1 - PTHR10588 KOG1644 - - - AT1G78230.1 - Outer arm dynein light chain 1 protein Cre17.g744447 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 7 - - g18005.t1,Cre20.g760250.t1.1,Cre20.g760250.t1.2 PF00122 PTHR24093:SF48,PTHR24093 KOG0209 3.6.3.- K01552 GO:0000166,GO:0046872 AT5G23630.1 MIA,PDR2 phosphate deficiency response 2 Cre15.g641650 HLM22 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 9 - - g15469.t1,HLM22 - PTHR10887:SF17,PTHR10887 - - - - AT1G05460.1 SDE3 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre14.g633950 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g15286.t1,Cre14.g633950.t1.1 - - - - - - - - - Cre16.g690400 DNJ5 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 2 DnaJ-like protein DnaJ-like protein; similar to Q4DN10 from Trypanosoma cruzi; TargetP predicts both proteins to secretory pathway (reliability score 1 for T. cruzi, score 3 for DNJ5); contains C-terminal J-domain (pfam00226) g16205.t1 PF00226 PTHR24078 KOG0723 - - GO:0031072 AT3G14200.1 - Chaperone DnaJ-domain superfamily protein Cre01.g023800 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - - - - g550.t1 - - KOG2812 - - - AT4G36690.4 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor Cre01.g036300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g816.t1 PF01753 PTHR13244 - - - GO:0008270 AT2G24640.1 UBP19 ubiquitin-specific protease 19 Cre07.g325850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g7579.t1 - - - - - - - - - Cre04.g213985 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g4494.t1,Cre49.g789650.t1.1,Cre49.g789650.t1.2 PF00226 - - - - GO:0031072 AT4G28480.1 - DNAJ heat shock family protein Cre02.g141050 AGO1 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 Argonaute-like protein Argonaute-like protein presumably involved in posttranscriptional gene silencing/RNA interference. ChromoDB AGO3401 g2669.t1,AGO1 PF02170,PF02171 PTHR22891 KOG1041 - - GO:0005515 AT1G48410.2 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase Cre03.g191750 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 8 - - g3968.t1,Cre03.g191750.t1.1 - - - - - - - - - Cre12.g502000 FAP253 - 0 7 1.0 1.0 0 7 1.0 1.0 O n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g12533.t1,Cre12.g502000.t1.1,FAP253 - PTHR21074 - - - - - - - Cre02.g094150 HIK - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 17 - - g1779.t1,Cre02.g094150.t1.1,HIK PF06203,PF00072 PTHR26402:SF303,PTHR26402 - - K12128 GO:0005515,GO:0000156,GO:0000160,GO:0006355 AT2G46790.1 APRR9,PRR9,TL1 pseudo-response regulator 9 Cre03.g199500 FAP129 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG8 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400] g4338.t1,Cre03.g199500.t1.1 - - - - - - - - - Cre10.g451400 CNX1E,CNX1B - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 14 Molybdenum cofactor biosynthesis protein Molybdopterin biosynthesis enzyme; related to C terminal region of Molybdopterin biosynthesis CNX1 protein (Molybdenum cofactor biosynthesis enzyme CNX1); Homologous to Arabidopsis thaliana Cnx1E. Previously annotated as CNX1B. g11092.t1,CNX1B,CNX1E PF00994,PF03454,PF03453 PTHR10192 KOG2371 - K03750 GO:0006777,GO:0032324 AT5G20990.1 B73,CHL6,CNX,CNX1,SIR4 molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) Cre08.g365950 - 0 6 1.0 1.0 0 6 1.0 1.0 C n upregulated 2 - - g8576.t1,Cre08.g365950.t1.1 PF03982 PTHR22753:SF5,PTHR22753 - - - GO:0016747 AT1G54570.1 - Esterase/lipase/thioesterase family protein Cre17.g720528 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 8 - - g17439.t1,Cre17.g720528.t1.1 PF01869 PTHR12862 KOG1794 - - - AT1G30540.1 - Actin-like ATPase superfamily protein Cre12.g549850 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g13551.t1 - - - - - - AT5G52520.1 OVA6,PRORS1 Class II aaRS and biotin synthetases superfamily protein Cre12.g507850 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g12401.t1 - - - - - - - - - Cre04.g222000 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 14 - - g4845.t1 PF00400 PTHR22847,PTHR22847:SF133 KOG1063 - - - AT1G15440.2 ATPWP2,PWP2 periodic tryptophan protein 2 Cre16.g667700 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g16285.t1,Cre16.g667700.t1.1 PF03407 - - - - - - - - Cre09.g407950 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g10112.t1,Cre09.g407950.t1.1 PF03227 PTHR13234,PTHR13234:SF8 KOG3160 - - - - - - Cre10.g457801 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 15 - - g11230.t1,Cre10.g457800.t1.2 - - - - - - - - - Cre13.g572375 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g14076.t2, g14076.t1 - - - - - - - - - Cre07.g317300 ROC78,MAPKKKK1 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 Mitogen Activated Protein Kinase Kinase Kinase Kinase, involved in circadian rhythms MAPKKKK1; MAP (Mitogen-Activated Protein) Kinase Kinase Kinase Kinase; MAP4K; (Ste20-like). Matsuo et al.\'s (2008) roc78 (rhythm of chloroplast) circadian rhythm mutant locus maps here g7334.t1,MAPKKKK1,ROC78 PF00069 PTHR24361:SF93,PTHR24361 KOG0201 - - GO:0004672,GO:0005524,GO:0006468 AT1G69220.1 SIK1 Protein kinase superfamily protein Cre03.g174000 LPA2,EFG11 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 Translation elongation factor EFG/EF2, LepA-related Translation elongation factor EFG/EF2 related to GTP binding protein LepA. Previously annotated as LPA2 g3589.t1,EFG11,LPA2 PF06421,PF00679,PF00009 PTHR23115,PTHR23115:SF40 KOG0462 - - GO:0005525,GO:0003924 AT5G39900.1 - Small GTP-binding protein Cre13.g586800 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - - - g14397.t1 - PTHR23125 - - - - - - - Cre06.g278105 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g6248.t1,Cre13.g593800.t1.1 - - - - - - - - - Cre06.g278102 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g6245.t1,Cre13.g593650.t1.1,Cre13.g593650.t1.2 - - - - - - - - - Cre06.g278101 STD1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 6 Serine/threonine dehydratase Putative serine/threonine dehydratase (EC 4.3.1.19) - serine racemase (EC 5.1.1.10) ; based on similarity to bifunctional Arabidopsis serine racemase (GenBank AB206823) (PMID: 16483618); converts L-serine to D-serine (serine racemase) or to pyruvate (seri g6244.t1,Cre13.g593600.t1.1,Cre13.g593600.t1.2,STD1 PF00291 PTHR10314,PTHR10314:SF36 KOG1251 5.1.1.18 K12235 GO:0003824,GO:0008152,GO:0030170 AT4G11640.1 ATSR,SR serine racemase Cre16.g691754 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g15646.t1 - - - - - - - - - Cre16.g691756 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g15648.t1,Cre16.g691621.t1.2 - - - - - - - - - Cre16.g691750 AMI1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - Formamidase/acetamidase Similar to plant formamidase (possibly acetamidase), not to yeast amidase g15644.t1,Cre16.g691750.t1.1,AMI1 PF03069 - - 3.5.1.49 K01455 GO:0008152,GO:0016811 AT4G37560.1 - Acetamidase/Formamidase family protein Cre06.g278109 - 0 18 1.0 1.0 0 18 1.0 1.0 C n downregulated 16 Oleate/fatty acid desaturase, delta-12 Oleate/fatty acid desaturase, delta-12. Also known as FAD2b g6252.t1,Cre13.g593950.t1.1 PF00487 - - - - GO:0006629,GO:0016491,GO:0055114 - - - Cre16.g655550 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g15848.t1 - - - - - - - - - Cre02.g104750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g2144.t1 - - - - - - - - - Cre13.g603800 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g14570.t1 - - - - - - - - - Cre02.g140900 - 0 1 1.0 nan 0 1 1.0 nan C n - 13 - - g2676.t1 - - - - - - - - - Cre12.g519600 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g12806.t1 - - - - - - - - - Cre03.g207937 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g4438.t1 - - - - - - - - - Cre01.g053450 CYA1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g1182.t1 PF00211 PTHR16305:SF7,PTHR16305 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre03.g205600 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g4200.t1,Cre03.g205600.t1.1 PF02410 PTHR21043 - - - - AT3G12930.1 - Lojap-related protein Cre17.g747147 - 0 1 1.0 nan 0 1 1.0 nan SP n - 9 - - g18059.t1,Cre20.g758100.t1.1 PF10294 PTHR14614 - - - - AT1G73320.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre04.g223350 CYG62 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 14 - - g4873.t1 PF00211 PTHR11920:SF132,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre06.g271700 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 - - g6097.t1 PF07687,PF01546 PTHR11014:SF9,PTHR11014 KOG2275 3.4.17.- K13049 GO:0016787,GO:0008152 AT4G38220.1 - Peptidase M20/M25/M40 family protein Cre11.g469224 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - - - g11779.t2,Cre11.g469250.t1.2, g11779.t1,Cre11.g469250.t2.1 - - - - - - - - - Cre17.g738250 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g17857.t1 PF01255 PTHR10291 KOG1602 2.5.1.- K11778 GO:0016765 AT5G58770.1 - Undecaprenyl pyrophosphate synthetase family protein Cre12.g521800 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g12853.t1,Cre12.g521800.t1.1 - - - - - - - - - Cre15.g634750 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g15305.t1 PF04720 - - - - - AT1G62420.1 - Protein of unknown function (DUF506) Cre01.g011300 CPY,SCLP50 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 12 - - g282.t1,CPY PF00450 PTHR11802 KOG1282 3.4.16.- K09645 GO:0004185,GO:0006508 AT1G15000.1 scpl50 serine carboxypeptidase-like 50 Cre06.g266200 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 14 - - g5975.t1,Cre06.g266200.t1.1, g5975.t2 - PTHR26208,PTHR26208:SF23 - - - - - - - Cre17.g710200 IAD1 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 - - g17200.t2,IAD1, g17200.t1,IAD1 PF01231 PTHR15058 - 1.13.11.52 K00463 GO:0020037 - - - Cre05.g233551 - 0 16 1.0 1.0 0 16 1.0 1.0 M n - 17 - - g5103.t1,Cre05.g233500.t1.2 PF03110 - KOG3815 - - GO:0003677,GO:0005634 AT2G42200.1 SPL9 squamosa promoter binding protein-like 9 Cre05.g233550 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 17 - - g5102.t1 PF07714 PTHR23257:SF338,PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT3G01490.1 - Protein kinase superfamily protein Cre08.g380550 SDR14 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 12 - - g8956.t1,Cre08.g380550.t1.1,SDR14 PF00106 PTHR24316:SF98,PTHR24316 KOG1208 - - GO:0008152,GO:0016491 AT4G23430.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre14.g609926 - 0 1 1.0 nan 0 1 1.0 nan M n - 18 - - g14702.t1 - - - - - - - - - Cre06.g262150 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g5890.t2, g5890.t1 - - - - - - - - - Cre01.g009250 TOP2 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 DNA topoisomerase II DNA topoisomerase II. Similar to DNA topoisomerase II in Arabidopsis, TOP2 or AT3G23890. g233.t1,TOP2 PF02518,PF00204,PF00521 PTHR10169:SF19,PTHR10169 KOG0355 5.99.1.3 K03164 GO:0005524,GO:0003677,GO:0003918,GO:0005694,GO:0006265 AT3G23890.1 ATTOPII,TOPII topoisomerase II Cre13.g588405 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g14435.t2,Cre13.g588405.t1.1, g14435.t1 - - - - - - - - - Cre10.g436450 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10760.t1,Cre10.g436450.t1.1, g10760.t2 - - - - - - - - - Cre02.g095050 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g1929.t1, g1929.t2 - - - - - - - - - Cre03.g168900 FMO12 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g3477.t1,Cre03.g168900.t1.1,FMO12 PF00743 PTHR23023,PTHR23023:SF24 - - - GO:0004499,GO:0050660,GO:0050661,GO:0055114 AT1G19250.1 FMO1 flavin-dependent monooxygenase 1 Cre02.g095059 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1833.t1,Cre11.g470750.t1.1 - - - - - - - - - Cre02.g095058 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n downregulated 11 - - g1832.t1,Cre11.g470700.t1.1 - - KOG0487 - - - - - - Cre13.g569801 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 18 - - g14019.t1 - - - - - - - - - Cre06.g266383 HEL26 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g5980.t2,g20002.t1,Cre06.g266400.t1.3,HEL26 - PTHR25888,PTHR25888:SF40 - - - - AT2G01130.1 - DEA(D/H)-box RNA helicase family protein Cre09.g395850 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g9372.t1,Cre09.g395850.t1.1 - - - - - - - - - Cre07.g328950 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 16 - - g7649.t1 PF02129 PTHR12277:SF9,PTHR12277 KOG1552 - - GO:0004177,GO:0006508 AT4G14290.1 - alpha/beta-Hydrolases superfamily protein Cre10.g455400 RME2 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g11176.t1,Cre10.g455400.t1.1,RME2 - PTHR18895:SF34,PTHR18895 - - - - - - - Cre13.g563350 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13862.t1,Cre13.g563350.t1.1 - - - - - - - - - Cre12.g555800 STK2,STPK2 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK2 g13416.t1,Cre12.g555800.t1.1,STK2,STPK2 PF00069 PTHR11584,PTHR11584:SF329 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT1G56145.1 - Leucine-rich repeat transmembrane protein kinase Cre11.g467706 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 9 - - g11636.t1,Cre18.g743750.t1.1 PF00850 PTHR10625,PTHR10625:SF22 KOG1342 3.5.1.98 K11406 - AT5G61070.1 ATHDA18,HDA18 histone deacetylase of the RPD3/HDA1 superfamily 18 Cre11.g467704 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11634.t1 - - - - - - - - - Cre11.g467705 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 14 - - g11635.t1 PF01496 PTHR11629,PTHR11629:SF11 KOG2189 - - GO:0015078,GO:0015991,GO:0033177 AT4G39080.1 VHA-A3 vacuolar proton ATPase A3 Cre11.g467702 - 0 1 1.0 nan 0 1 1.0 nan C n - 5 - - g11632.t1,Cre18.g744000.t1.1,Cre18.g744000.t1.2 PF00189 PTHR11760:SF13,PTHR11760 - - - GO:0003735,GO:0005622,GO:0005840,GO:0006412 ATMG00090.1 - structural constituent of ribosome;protein binding Cre06.g290300 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 4 - - g6734.t1,Cre06.g290300.t1.1 - - - - - - - - - Cre12.g555803 NDA6 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 Type-II NADH dehydrogenase Putative NADH dehydrogenase; disulfide oxidoreductase/ electron carrier g13820.t1,Cre27.g775700.t1.1,NDA6 PF07992 PTHR22915,PTHR22915:SF5 KOG2495 - - - AT3G44190.1 - FAD/NAD(P)-binding oxidoreductase family protein Cre10.g459950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11278.t2, g11278.t1 - - - - - - - - - Cre04.g221850 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 13 - - g4842.t1,Cre04.g221850.t1.1 - - - - - - - - - Cre15.g640350 OPR97,CLR4 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g15382.t1,Cre15.g640350.t1.1,CLR4 - - - - - - - - - Cre11.g482676 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11983.t1 - - - - - - - - - Cre14.g629050 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 6 - - g15150.t1,Cre14.g629050.t1.1 PF02298 - - - - GO:0005507,GO:0009055 AT2G32300.1 UCC1 uclacyanin 1 Cre11.g483100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g11993.t1 PF00069 PTHR23257:SF302,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre01.g010950 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 17 - - g275.t1 PF00023 PTHR24128 KOG4412 - - GO:0005515 AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre12.g500050 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g12575.t1,Cre12.g500050.t1.1 PF00397 - - - - GO:0005515 - - - Cre12.g507002 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g12424.t1,Cre12.g507002.t1.1 - - - - - - - - - Cre12.g507001 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g12425.t1,Cre12.g507001.t1.1 - - - - - - - - - Cre12.g507000 FFT6 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 10 - - g12426.t1,FFT6 - - - - - - - - - Cre09.g408650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g10128.t1 - - - - - - - - - Cre02.g113000 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g2327.t1,Cre02.g113000.t1.1 - PTHR10502 - - - GO:0005509,GO:0005544 - - - Cre02.g083273 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g1531.t1,Cre02.g083273.t1.1 - - - - - - - - - Cre12.g551552 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g13810.t1,Cre27.g775200.t1.1,Cre27.g775200.t1.2 PF12499 - - - - - - - - Cre17.g732802 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g17708.t1 PF01557,PF09298 PTHR11820:SF1,PTHR11820 KOG2843 3.7.1.2 K01555 GO:0004334,GO:0009072,GO:0003824,GO:0008152 AT1G12050.1 - fumarylacetoacetase, putative Cre02.g092800 FAP136 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g1740.t1,Cre02.g092800.t1.1 - - - - - - - - - Cre07.g335451 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7810.t1 - PTHR13078,PTHR13078:SF14 - - - - - - - Cre06.g297650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g6885.t1,Cre06.g297650.t1.1, g6885.t2, g6885.t3 PF00644,PF00179 PTHR24067:SF41,PTHR24067 KOG0897 6.3.2.19 K10582 GO:0003950,GO:0016881 - - - Cre10.g462150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g11329.t1 - - - - - - - - - Cre07.g351550 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 - - g8178.t1 PF06203 - - - - GO:0005515 AT1G63820.1 - CCT motif family protein Cre16.g649400 CPLD16,RRM15 - 0 1 1.0 nan 0 1 1.0 nan M Y - 1 Putative rRNA (guanine-N2-)-methyltransferase Putative rRNA (guanine-N2-)-methyltransferase. Plant-lineage-and-diatoms conserved expressed protein, RNA methyl transferase related;organelle-targeted; Arabidopsis homolog has RNA binding activity. Previously annotated as CPLD16 g15713.t1,Cre16.g649400.t1.1,RRM15 PF10672 PTHR11061 - - - - AT1G54310.2 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre15.g641400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g15464.t1 - - - - - - - - - Cre03.g199199 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g4359.t1,Cre19.g751569.t1.1,Cre19.g751569.t1.2 PF07282 - - - - - - - - Cre13.g567150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g13956.t1,Cre13.g567150.t1.1 PF00400 PTHR16220 KOG4497 - - - AT5G07590.1 - Transducin/WD40 repeat-like superfamily protein Cre04.g226114 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g4945.t1 - - - - - - - - - Cre07.g353950 XPG5 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g8234.t1,XPG5 PF00867,PF00752 PTHR11081,PTHR11081:SF8 - 3.1.-.- K10746 GO:0004518,GO:0006281 AT1G29630.2 - 5\'-3\' exonuclease family protein Cre17.g721600 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17459.t1 PF00443 PTHR24006,PTHR24006:SF31 KOG2026 - K12847 GO:0004221,GO:0006511 AT4G22285.1 - Ubiquitin C-terminal hydrolases superfamily protein Cre01.g047800 GRX6 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 Glutaredoxin, CGFS type Glutaredoxin 6, CGFS type glutaredoxin, probably chloroplastic. GRX domain on C-terminal part. N-terminal part: no homology with proteins of known function but strong homology with synechocystis slr1035. PMID: 16328797 g1062.t1 PF00462 PTHR10293,PTHR10293:SF15 KOG1752 - - GO:0009055,GO:0015035,GO:0045454 AT2G38270.1 ATGRX2,CXIP2 CAX-interacting protein 2 Cre04.g217450 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 9 - - g4527.t1 PF04979 - - - - GO:0004864,GO:0009966,GO:0043666 - - - Cre10.g430850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g10639.t1,Cre10.g430850.t1.1 - - - - - - - - - Cre07.g354450 CYP22,CYP743B3,CYP743B1 - 0 1 1.0 nan 0 1 1.0 nan M n - - Cytochrome P450, CYP197 superfamily Cytochrome P450, CYP197 superfamily. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP743 family has best BLAST hits to CYP3 family members (animal sequences). The top g8245.t1,Cre07.g354450.t1.1,CYP22,CYP743B1 PF00067 PTHR24301,PTHR24301:SF127 - 1.14.14.1 K07424 GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT1G31800.1 CYP97A3,LUT5 cytochrome P450, family 97, subfamily A, polypeptide 3 Cre14.g616850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g14861.t1 PF00582 - - - - GO:0006950 - - - Cre07.g343050 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 8 - - g7980.t1,Cre07.g343050.t1.1 - - - - - - - - - Cre01.g033516 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g757.t1,Cre01.g033524.t1.2 PF01063 - - - - GO:0003824,GO:0008152 AT3G54970.1 - D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein Cre13.g605300 - 0 11 1.0 1.0 0 11 1.0 1.0 C n - 16 - - g14599.t1 - - - - - - - - - Cre13.g583600 DGD1 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y upregulated 17 Galactolipid galactosyltransferase Involved in digalactosyldiacylglycerol biosynthesis g14328.t1,Cre13.g583600.t1.1 PF00534 PTHR12526:SF101,PTHR12526 - 2.4.1.241 K09480 GO:0009058 AT3G11670.1 DGD1 UDP-Glycosyltransferase superfamily protein Cre07.g350200 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g8147.t1,Cre07.g350200.t1.1 - - - - - - - - - Cre17.g747447 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g18065.t1,Cre20.g757942.t1.1,Cre20.g757942.t1.2 - - - - - - - - - Cre10.g429000 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 2 - - g10598.t1, g10598.t3, g10598.t2 PF00179 - KOG0417 - - GO:0016881 AT2G16740.1, AT5G56150.1 UBC30, UBC29 ubiquitin-conjugating enzyme 30, ubiquitin-conjugating enzyme 29 Cre05.g246100 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 10 - - g5213.t1,Cre05.g246100.t1.1 - - - - - - - - - Cre09.g403300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9196.t1,Cre09.g403300.t1.1 PF03849 PTHR13152 KOG3471 - K03144 GO:0003702,GO:0005634,GO:0006281,GO:0006355 AT4G17020.1 - transcription factor-related Cre16.g650250 HFO39 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 Histone H4 Replication-linked Histone H4 g15732.t1,Cre16.g650250.t1.1,HFO39 PF00125 PTHR10484 KOG3467 - K11254 GO:0000786,GO:0003677,GO:0005634,GO:0006334 AT2G28740.1 HIS4 histone H4 Cre06.g287450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g6677.t1 PF00069 PTHR24055:SF159,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT1G71530.1 - Protein kinase superfamily protein Cre12.g548450 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 9 - - g13581.t1 PF05686 PTHR12203 - - - - - - - Cre06.g307950 - 0 1 1.0 nan 0 1 1.0 nan M n - 5 - - g7130.t1 PF03948,PF01281 PTHR21368:SF18,PTHR21368 - - - GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT5G53070.1 - Ribosomal protein L9/RNase H1 Cre12.g537581 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g13219.t1,Cre65.g793400.t1.1,Cre65.g793400.t1.2 PF02142,PF01808 PTHR11692 - 2.1.2.3,3.5.4.10 K00602 GO:0003937,GO:0004643,GO:0006164,GO:0003824,GO:0006188 AT2G35040.2 - AICARFT/IMPCHase bienzyme family protein Cre07.g342900 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g7927.t1 PF01633 - - - - GO:0016773 AT1G49820.1 ATMTK,MTK S-methyl-5-thioribose kinase Cre02.g079750 HIK - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 3 - - g1457.t1,HIK PF00512,PF00072,PF02518 PTHR24423 - - - GO:0000155,GO:0007165,GO:0016020,GO:0000156,GO:0000160,GO:0006355,GO:0005524 AT5G10720.1 AHK5,CKI2,HK5 histidine kinase 5 Cre12.g555700 DNJ15 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - DnaJ-like protein DnaJ-like protein; perhaps targeted to chloroplast, since it contains N-terminal extension which is predicted by ChloroP to be chloroplast transit peptide; no similarity to other proteins in protein database; contains N-terminal J-domain (pfam00226) g13418.t1 PF00226 PTHR24077 - - - GO:0031072 AT2G22360.1 - DNAJ heat shock family protein Cre04.g214433 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g4498.t1 - - - - - - - - - Cre06.g292950 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g6786.t1,Cre06.g292950.t1.1 PF04081 PTHR14303 - - K03505 GO:0005634,GO:0006260 AT1G09815.1 POLD4 polymerase delta 4 Cre12.g530750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g13063.t1 PF02985 - - - - GO:0005515 - - - Cre14.g614750 NAT34 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - - - - g14812.t1,NAT34 PF00583 PTHR23091,PTHR23091:SF53 KOG3139 - - GO:0008080,GO:0008152 AT4G28030.1 - Acyl-CoA N-acyltransferases (NAT) superfamily protein Cre06.g302250 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g6994.t1 - - - - - - - - - Cre03.g178276 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g3690.t1,Cre03.g178276.t1.1 - - - - - - - - - Cre16.g678808 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 16 - - g16139.t1,Cre01.g063850.t1.1 PF00400 PTHR22847,PTHR22847:SF145 KOG0271 - - - AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre06.g305700 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g7076.t1 - - - - - - - - - Cre16.g688526 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g16849.t1,Cre01.g071450.t1.1 PF00069,PF01846 PTHR24361:SF235,PTHR24361 KOG0594 - - GO:0004672,GO:0005524,GO:0006468 AT5G01920.1 STN8 Protein kinase superfamily protein Cre12.g532450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g13101.t1,Cre12.g532450.t1.1 PF00984,PF03720,PF03721 PTHR11374 KOG2666 - - GO:0016616,GO:0051287,GO:0055114 AT5G15490.1 - UDP-glucose 6-dehydrogenase family protein Cre02.g083650 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g1540.t1 - - - - - - - - - Cre07.g325719 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g7533.t1,Cre26.g772300.t1.1,Cre26.g772300.t1.2 - - - - - - - - - Cre07.g325718 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g7532.t3,Cre26.g772250.t1.1, g7532.t1,Cre26.g772250.t3.1, g7532.t2,Cre26.g772250.t2.1 - - - - - - - - - Cre10.g418150 FAP178 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g10354.t2, g10354.t1,Cre10.g418150.t1.1 PF06294 PTHR12509 - - - - - - - Cre10.g441050 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g10854.t1,Cre10.g441050.t1.1 PF00628,PF12165 PTHR23123 - - - GO:0005515 AT5G05610.1 AL1 alfin-like 1 Cre07.g325713 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7527.t1,Cre26.g772000.t1.1,Cre26.g772000.t1.2 PF01585,PF07842,PF12457 PTHR23329 KOG2184 - K13103 GO:0003676,GO:0005622,GO:0003677,GO:0003700,GO:0005634,GO:0006355 AT1G17070.1 - GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain Cre13.g574250 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 15 - - g14116.t1 PF00069 PTHR23257:SF343,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre08.g385250 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g9065.t1 - - - - - - - - - Cre07.g325717 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 15 - - g7531.t1,Cre26.g772200.t1.1 - - - - - - - - - Cre07.g325715 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 2 - - g7529.t1,Cre26.g772100.t1.1 - PTHR16036:SF6,PTHR16036 KOG2505 - - - AT1G01930.1 - zinc finger protein-related Cre07.g325714 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g7528.t1,Cre26.g772050.t1.1,Cre26.g772050.t1.2 - - - - - - - - - Cre09.g396139 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 8 - - g9828.t1,Cre02.g132750.t1.1 - PTHR10887 - - - - AT5G47010.1 ATUPF1,LBA1,UPF1 RNA helicase, putative Cre17.g699750 CTL2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 C-type lectin C-type lectin, contains C-type lectin domain responsible for carbohydrate binding activity (PMID: 16336259) g16969.t1,CTL2 PF12499 - - - - - - - - Cre02.g078400 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g1420.t1 PF01062 - KOG1073 - - - - - - Cre12.g491100 SDR32 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g12162.t1,Cre12.g491100.t1.1,SDR32 - PTHR24316:SF98,PTHR24316 - - - - - - - Cre03.g201550 MMP20 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 6 - - g4291.t1,Cre03.g201550.t1.1,MMP20 PF05548 - - - - - - - - Cre03.g201552 MMP8 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - Metalloproteinase of VMP family Belongs to the large VMP-family of metalloproteinases (identified in Volvox); the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; extracellular matrix glycoprotein g4380.t2,Cre19.g752550.t2.1,MMP8, g4380.t1,Cre19.g752550.t1.1,MMP8 PF05548 - - - - - - - - Cre16.g658700 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15912.t1 PF01661 PTHR11106 - - - - AT2G40600.1 - appr-1-p processing enzyme family protein Cre14.g608990 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g14681.t1 - - - - - - - - - Cre16.g683400 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 16 - - g16434.t1,Cre16.g683400.t1.1 PF00650 PTHR10174:SF78,PTHR10174 - - - - AT4G08690.1 - Sec14p-like phosphatidylinositol transfer family protein Cre07.g312400 KDG1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 Diacylglycerol kinase Diacylglycerol kinase similar to that of Oryza sativa XP_468760 (EC 2.7.1.107) g7228.t1,KDG1 PF00609,PF00781 PTHR11255,PTHR11255:SF31 - 2.7.1.107 K00901 GO:0004143,GO:0007205 AT5G07920.1 ATDGK1,DGK1 diacylglycerol kinase1 Cre03.g180800 HDA16 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 9 - - g3747.t1,HDA16 PF02671,PF08295 PTHR12346 KOG4204 - - GO:0005634,GO:0006355 AT1G70060.1 SNL4 SIN3-like 4 Cre02.g143635 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 - - g2610.t1,Cre02.g143635.t1.1 PF11209 - - - - - - - - Cre16.g659250 CYB5-5,CYB5 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 15 Cytochrome b5 protein Cytochrome b5 protein with possible nitrate reductase activity. Previously annotated as CYB5-5 g15926.t1,Cre16.g659250.t1.1,CYB5,CYB5-5 PF00173 PTHR19359 - - - GO:0020037 AT2G32720.1 ATCB5-B,B5 #4,CB5-B cytochrome B5 isoform B Cre09.g389850 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 13 - - g9500.t1 - - - - - - - - - Cre06.g251150 OHP1,OHP2 - 0 1 1.0 nan 0 1 1.0 nan C Y upregulated 4 Low CO2 and stress-induced one-helix protein Low-CO2 inducible gene revealed by cDNA array analyses (LCI25); conserved in plants and Cyanobacteria; homologous to stress induced one-helix protein in Arabidopsis and possibly belonging to high-light inducible protein (HLIP) family (LHCII superfamily). g5625.t1,Cre06.g251150.t1.1,OHP1 - - - - - - AT1G34000.1 OHP2 one-helix protein 2 Cre07.g319250 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g7381.t1 - - - - - - - - - Cre01.g034350 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 18 - - g775.t1 PF00249 PTHR10641 - - K09422 - AT5G02320.1 ATMYB3R5,MYB3R-5 myb domain protein 3r-5 Cre02.g097650 RPN6 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 26S proteasome regulatory subunit 26S proteasome regulatory complex, lid subcomplex, non-ATPase subunit RPN6 (subunit 9) (PSD11) (PSMD11) g1987.t1,Cre02.g097650.t1.1,RPN6 PF01399 PTHR10678 KOG1463 - K03036 GO:0005515 AT1G29150.1 ATS9,RPN6 non-ATPase subunit 9 Cre17.g715000 HSP33 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 3 Heat shock protein 33 Redox-regulated chaperone, activated by oxidative stress; inactive as a monomer, active as a dimer, dimerization via disulfide bond formation. Acts as holdase to maintain unfolded proteins in folding competent state until DnaK is reactivated [PMID: 156943 g17309.t1,Cre17.g715000.t1.1 PF01430 - - - - GO:0005737,GO:0006457,GO:0051082 - - - Cre14.g621050 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 9 - - g14966.t1 PF00249 PTHR10641 KOG0048 - - - AT3G09230.1 AtMYB1,MYB1 myb domain protein 1 Cre07.g348650 CYG65 - 0 13 1.0 1.0 0 13 1.0 1.0 C n - 18 - - g8111.t1,Cre07.g348650.t1.1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre07.g318250 HLM12 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 9 - - g7356.t1,HLM12, g7356.t2,HLM12 PF00856 PTHR12197,PTHR12197:SF78 - - - GO:0005515 AT1G26760.1 ATXR1,SDG35 SET domain protein 35 Cre08.g375676 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8850.t1 - - - - - - - - - Cre03.g172350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g3554.t1 - - - - - - - - - Cre07.g313164 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g7248.t1,Cre74.g795250.t1.1,Cre74.g795250.t1.2 PF00450 PTHR11802,PTHR11802:SF12 KOG1282 - - GO:0004185,GO:0006508 AT4G12910.1 scpl20 serine carboxypeptidase-like 20 Cre10.g425000 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 17 - - g10506.t1 PF00069 PTHR23257:SF300,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre03.g200600 KIN14A-1,KIN14-4 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 11 - - g4315.t1,KIN14-4,KIN14A-1, g4315.t2,KIN14-4,KIN14A-1 PF00225 PTHR24115,PTHR24115:SF170 KOG0239 - - GO:0003777,GO:0005524,GO:0007018 AT4G05190.1, AT4G21270.1 ATK5, ATK1,KATA,KATAP kinesin 5, kinesin 1 Cre17.g700166 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g16981.t1 PF00069 PTHR13902 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT3G18750.1 ATWNK6,WNK6,ZIK5 with no lysine (K) kinase 6 Cre03.g145547 CBR1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 NADH-cytochrome b5 reductase - g2942.t1,Cre01.g059450.t1.1,Cre01.g059450.t1.2,CBR1 PF00970,PF00175 PTHR19370:SF8,PTHR19370 KOG0534 1.6.2.2 K00326 GO:0016491,GO:0055114 AT5G17770.1 ATCBR,CBR,CBR1 NADH:cytochrome B5 reductase 1 Cre01.g035000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g790.t1,Cre01.g035000.t1.1 PF00400 PTHR14091 KOG0270 - - - AT4G18905.1 - Transducin/WD40 repeat-like superfamily protein Cre06.g285600 RWP5,MID - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 18 RWP-RK transcription factor/minus dominance protein RWP-RK domain transcription factor g6638.t2,MID,RWP5, g6638.t1,Cre06.g285600.t1.1,MID,RWP5 PF02042 - - - - - AT4G35590.1 - RWP-RK domain-containing protein Cre13.g583450 EZY17 - 0 16 1.0 1.0 0 16 1.0 1.0 M n - 16 - - g14325.t1,Cre13.g583450.t1.1,EZY17 PF04749 PTHR15907,PTHR15907:SF11 - - - - AT1G52200.1 - PLAC8 family protein Cre01.g029800 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g677.t1,Cre01.g029800.t1.1 - - - - - - - - - Cre06.g286550 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated 5 - - g6658.t1,Cre06.g286550.t1.1 - - - - - - - - - Cre19.g750097 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g18119.t1,Cre33.g783200.t1.1,Cre33.g783200.t1.2 - - - - - - - - - Cre14.g632847 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 8 - - g15258.t1 PF03016,PF07974 PTHR11062,PTHR11062:SF13 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre02.g145800 MDH3,MDY3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 NAD-dependent malate dehydrogenase NAD-dependent Malate Dehydrogenase (EC 1.1.1.37), cytosolic; contains full aa sequence of Chlamydomonas cytosolic NAD-MDH (GenBank CAC80841), but ~50 aa longer at the amino terminus; still predicted by Target-P to lack an organelle targeting sequence thou g2546.t1,Cre02.g145800.t1.1,MDH3 PF02866,PF00056 PTHR23382 KOG1496 1.1.1.37 K00025 GO:0006108,GO:0016615,GO:0055114,GO:0016491 AT5G43330.1 - Lactate/malate dehydrogenase family protein Cre12.g517950 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g12772.t1 - - - - - - - - - Cre11.g481750 GAS30 - 0 1 1.0 nan 0 1 1.0 nan SP n - - Hydroxyproline-rich glycoprotein, stress-induced Belongs to the large pherophorin-family, a family of extracellular matrix glycoproteins (cell wall glycoproteins) with a central hydroxyproline-rich (HR) domain. The mRNA is up-regulated in gametes, in zygotes, by agglutination/cAMP treatment, by osmotic g11961.t1,Cre11.g481750.t1.1,GAS30 PF12499 - - - - - - - - Cre10.g417500 CYN20-5,CYN9 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 8 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID:15047905]; contains an unusual N-terminal domain with signature of nuclear movement protein NudC (pfam03593)/alpha-crystallin/HSP20 (p23 co-chaperone of HSP90, cd00237) g10336.t1,Cre10.g417500.t1.1,CYN9 PF04969,PF00160 PTHR11071 KOG0880 - - GO:0003755,GO:0006457 AT5G58710.1 ROC7 rotamase CYP 7 Cre12.g542600 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g13717.t1,Cre12.g542600.t1.1 - - - - - - - - - Cre13.g607650 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 - - g14649.t1 - PTHR10891 KOG0027 - - - AT4G35310.1 ATCPK5,CPK5 calmodulin-domain protein kinase 5 Cre04.g233003 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 - - g5068.t1,Cre32.g780900.t1.1 - - - - - - - - - Cre01.g030986 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g702.t1 - - - - - - - - - Cre08.g360450 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n downregulated 18 - - g8441.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre09.g404050 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 18 - - g9178.t1 PF00069 PTHR23257:SF298,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre03.g166350 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g3414.t1 - - - - - - - - - Cre16.g687600 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g16337.t1 - - - - - - - - - Cre16.g670550 XPG3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g16218.t1,XPG3 PF00867,PF00752 PTHR11081,PTHR11081:SF21 - - - GO:0004518,GO:0006281 AT1G01880.1 - 5\'-3\' exonuclease family protein Cre16.g671200 BLZ20 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g16295.t1,BLZ20 - - - - - - - - - Cre16.g682050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g16462.t1, g16462.t2 PF03266 PTHR20953 - 3.6.1.15 K06928 GO:0005524,GO:0016740,GO:0019204 AT5G66005.3 - Expressed protein Cre16.g686552 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g16363.t1 PF03819 PTHR14552 - - - - AT3G25400.1 - - Cre16.g686550 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g16362.t1 PF12400 - - - - - - - - Cre05.g237250 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - - - - g5458.t1 - - - - - - - - - Cre12.g483900 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g12011.t2, g12011.t1 PF01769 - - - - GO:0006812,GO:0008324 - - - Cre09.g391353 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g9468.t1,Cre09.g391200.t1.3 PF00249 PTHR10641 - - - - AT3G08500.1 AtMYB83,MYB83 myb domain protein 83 Cre02.g101850 NAT11 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g2079.t1,Cre02.g101850.t1.1,NAT11 PF00583 PTHR23091:SF2,PTHR23091 KOG3138 - - GO:0008080,GO:0008152 AT5G11340.1 - Acyl-CoA N-acyltransferases (NAT) superfamily protein Cre13.g575500 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - - - g14144.t1 - - - - - - - - - Cre02.g106800 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g2189.t1,Cre02.g106800.t1.1 - - - - - - - - - Cre02.g081350 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 13 - - g1489.t1 PF00857 PTHR11080 - - - GO:0003824,GO:0008152 - - - Cre09.g387700 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 - - g9550.t1,Cre09.g387700.t1.1 - - - - - - - - - Cre10.g418700 DMA4 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g10366.t1,Cre10.g418700.t1.1,DMA4 PF10237 PTHR13200 - - - - AT3G58470.1 - nucleic acid binding;methyltransferases Cre04.g215750 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g4656.t1,Cre04.g215750.t1.1 PF00400 PTHR10971 KOG1036 - K02180 - AT3G19590.1 BUB3.1 Transducin/WD40 repeat-like superfamily protein Cre03.g203569 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g4398.t1,Cre19.g753350.t1.1 - - - - - - - - - Cre09.g388912 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g9627.t1,Cre02.g123839.t1.1,Cre02.g123839.t1.2 - - - - - - - - - Cre08.g381950 - 0 12 1.0 1.0 0 12 1.0 1.0 M n - 17 - - g8987.t1,Cre08.g381950.t1.1 PF00069 PTHR24058:SF120,PTHR24058 KOG0667 - - GO:0004672,GO:0005524,GO:0006468 AT5G35980.1 YAK1 yeast YAK1-related gene 1 Cre06.g272400 - 0 1 1.0 nan 0 1 1.0 nan SP n - 2 - - g6111.t1,Cre06.g272400.t1.1 PF01569 PTHR17955:SF5,PTHR17955 KOG3146 3.6.1.43 K07252 GO:0003824,GO:0016020 AT5G03080.1 - Phosphatidic acid phosphatase (PAP2) family protein Cre03.g202950 TRX14 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g4260.t1,TRX14 PF00085,PF00036 PTHR10891 KOG0027 - - GO:0045454 AT1G24620.1 - EF hand calcium-binding protein family Cre13.g564400 FAP161 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g13885.t1,Cre13.g564400.t1.1 - - - - - - - - - Cre08.g376200 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g8862.t1,Cre08.g376200.t1.1 - PTHR12979,PTHR12979:SF4 - - - - - - - Cre11.g477850 TXC1 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 7 Transcriptional coactivator-like protein Putative transcriptional coactivator (p100 homolog) containing Tudor and staphylococcal nuclease domain; presumably associated with RNA induced silencing complex (RISC). Previously annotated as TSN1 g11863.t1,TXC1 PF00567,PF00565 PTHR12302 KOG2039 - - GO:0003676,GO:0016788 AT5G61780.1 AtTudor2,TSN2,Tudor2 TUDOR-SN protein 2 Cre03.g192600 THK1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 - - g3986.t1,THK1 PF00265 PTHR11441 KOG3125 2.7.1.21 K00857 GO:0004797,GO:0005524 AT5G23070.1 - Thymidine kinase Cre12.g510250 VTC1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 Vacuolar Transport Chaperone-like protein Expressed Protein. Similar to Vacuolar Transport Chaperone. g12344.t1,Cre12.g510250.t1.1,VTC1 PF02656 PTHR10783 KOG4580 - - - - - - Cre10.g422350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g10449.t1 - PTHR11183,PTHR11183:SF13 - - - - - - - Cre16.g689600 FAP73 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 14 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g16187.t1,Cre16.g689600.t1.1 - PTHR21683 - - - - - - - Cre08.g381483 SDR15 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g8977.t1,SDR15 - - - - - - - - - Cre08.g369600 MAE2,MFT2 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - MATE efflux family protein Putative MATE efflux family protein, related to Arabidopsis MATE family protein. Previously annotated as MFT2 g8659.t1,MAE2,MFT2 PF01554 PTHR11206:SF3,PTHR11206 - - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT3G08040.1 ATFRD3,FRD3,MAN1 MATE efflux family protein Cre16.g690509 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g16214.t1 - - - - - - - - - Cre01.g004450 CPLD42 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 Membrane protein Conserved expressed membrane protein of unknown function (DUF1517). This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. g109.t1,Cre01.g004450.t1.1 PF07466 - - - - - AT1G54520.1 - - Cre17.g718400 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g17386.t1,Cre17.g718400.t1.1 - - - - - - - - - Cre17.g698600 LIPG3,LIP3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 Triacylglycerol lipase Related to triacylglycerol lipase precursor (Gastric lipase) (GL)(Pregastric esterase) (PGE) and lipase 3 precursor. Previously annotated as LIPG3 g16944.t1,LIP3,LIPG3 PF00561,PF04083 PTHR11005 KOG2624 - - GO:0006629 AT2G15230.1 ATLIP1,LIP1 lipase 1 Cre09.g412201 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g10206.t2, g10206.t1 - - KOG3454 - - - - - - Cre05.g231000 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g5145.t1,Cre05.g231000.t1.1 - - - - - - - - - Cre01.g016400 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 15 - - g389.t1 - - - - - - - - - Cre16.g685053 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g16818.t1,Cre01.g070150.t1.1 - - - - - - AT5G16780.1 DOT2,MDF SART-1 family Cre02.g082300 SUR6 - 0 1 1.0 nan 0 1 1.0 nan O Y - 1 - - g1508.t1,Cre02.g082300.t1.1,SUR6 PF04935 PTHR14369 - - - - AT5G05210.1 - Surfeit locus protein 6 Cre06.g271188 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 - - g6084.t1,Cre06.g271188.t1.1 PF00149 - - - - GO:0016787 - - - Cre13.g577900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g14199.t1,Cre13.g577900.t1.1 - - - - - - - - - Cre01.g001250 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g28.t1,Cre01.g001250.t1.1 - - - - - - - - - Cre03.g207400 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 13 - - g4161.t1,Cre03.g207400.t1.1 PF05762 - - - - - - - - Cre03.g150850 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g3070.t1,Cre03.g150850.t1.1 PF01485 PTHR11685,PTHR11685:SF19 - - - GO:0008270 AT4G19670.1 - RING/U-box superfamily protein Cre01.g036000 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 15 - - g810.t1 PF00069 PTHR24349,PTHR24349:SF128 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT1G76040.2 CPK29 calcium-dependent protein kinase 29 Cre16.g654350 SPL4 - 0 1 1.0 nan 0 1 1.0 nan O n - - Splicing factor-like protein Similar to splicing factor with U1 zinc finger domain. Contains KIN17 DNA/RNA-binding domain g15819.t1,SPL4 PF10357 PTHR12805 KOG2837 - K13102 - AT1G55460.1 - DNA/RNA-binding protein Kin17, conserved region Cre02.g092250 FKB42,FKB22 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 Peptidyl-prolyl cis-trans isomerase, FKBP-type Multi-domain protein, with a FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8, PPIase, Rotamase), a TPR repeat, a calmodulin-binding site, a transmembrane region, a large unknown central domain and a C-terminal Leucine-repeat [PMID: 15701785] g1729.t1,Cre02.g092250.t1.1,FKB22 PF07719,PF00254 PTHR10516 KOG0543 - - GO:0006457 AT3G21640.1 ATFKBP42,FKBP42,TWD1,UCU2 FKBP-type peptidyl-prolyl cis-trans isomerase family protein Cre08.g382750 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g9012.t1 - - - - - - - - - Cre09.g405150 PUS1 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - tRNA-pseudouridine synthase RNA pseudouridine synthase-like protein, putative precursor form possibly targeted to the mitochondria. g10048.t1,PUS1 PF01416 PTHR11142 KOG4393 - - GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT3G06950.1 - Pseudouridine synthase family protein Cre02.g095700 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1943.t1,Cre02.g095700.t1.1 - - - - - - - - - Cre09.g396650 PAT2 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 11 Phosphate acetyltransferase Putative phosphate acetyltransferase (EC 2.3.1.8); phosphotransacetylase; similarity to prokaryotic phosphate acetyltransferase (e.g., Desulfovibrio GenBank AAS97500). Acclimation to changing CO2 concentrations and light intensities was studied by Yamano g9354.t1,Cre09.g396650.t1.1 PF01515,PF07085 PTHR23406:SF3,PTHR23406 - - - GO:0008152,GO:0008415 - - - Cre01.g052300 E2F1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 E2F family transcription factor E2F family transcription factor. Putative function in G1/S and S/M. Positive regulator that controls commitment and S/M size checkpoints. Mutations at this locus suppress the small-cell phenotype of mutants in the MAT3 gene encoding a retinoblastoma-lik g1159.t1 PF02319 PTHR12081,PTHR12081:SF18 KOG2577 - - GO:0003700,GO:0005667,GO:0006355 AT5G22220.2 ATE2FB,E2F1,E2FB E2F transcription factor 1 Cre13.g602800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g14538.t1 PF00069 PTHR23139,PTHR23139:SF22 - - - GO:0004672,GO:0005524,GO:0006468 AT2G40580.1 - Protein kinase superfamily protein Cre04.g224350 MOT55 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 16 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g4894.t1,MOT55 PF03407 - - - - - AT2G35610.1 XEG113 xyloglucanase 113 Cre16.g648300 PHT6 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 6 - - g15691.t1,Cre16.g648300.t1.1,PHT6 PF07690 PTHR11662:SF23,PTHR11662 KOG2532 - - GO:0016021,GO:0055085 AT5G20380.1 PHT4;5 phosphate transporter 4;5 Cre16.g695450 SPL11,UAF4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g15559.t3,SPL11,UAF4, g15559.t2,SPL11,UAF4, g15559.t1,SPL11,UAF4 PF00076 PTHR23139, PTHR23139,PTHR23139:SF9 KOG0120 - - GO:0003676 AT2G16940.3 - Splicing factor, CC1-like Cre17.g746347 UNG1 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 Uracil DNA glycosylase Uracil DNA-glycosylase. Prevents mutagenesis by eliminating uracil from DNA by cleaving the N-glycosylic bond and triggering base-excision repair. Uracil bases occur from cytosine deamination or misincorporation of dUMP residues. g18043.t1,Cre20.g758750.t1.1,UNG1, g18043.t2,Cre20.g758750.t2.1,UNG1 PF03167 PTHR11264 KOG2994 3.2.2.- K03648 GO:0004844,GO:0006284 AT3G18630.1 ATUNG,UNG uracil dna glycosylase Cre17.g732650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g17705.t1,Cre17.g732650.t1.1 PF00400,PF02138 PTHR13743 KOG4462 - - - AT5G18525.1 - protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases Cre06.g290850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 10 - - g6742.t1,Cre06.g290850.t1.1 - - - - - - - - - Cre12.g553052 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g13476.t1 - - - - - - - - - Cre01.g017750 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g420.t1, g420.t2 - - - - - - - - - Cre09.g416583 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g10310.t1 PF07282 - - - - - - - - Cre10.g441550 MAM3B - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated 15 Protein putatively involved in mitochondrial biogenesis Contains a DUF21 transmembrane domain of unknown function usually associated with CBS domains (found in Hemolysins and Mg2+/CO2 transporters CorB CorC); similarity to many Arabidopsis proteins and to yeast Mam3p(mitochondrial aberrant morphology), involve g10865.t1,MAM3B PF01595 PTHR12064:SF2,PTHR12064 - - - - AT4G33700.1 - CBS domain-containing protein with a domain of unknown function (DUF21) Cre09.g388282 MRPS18 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 5 Mitochondrial ribosomal protein S18 Putative mitochondrial ribosomal protein S18, imported to mitochondria g9609.t1,Cre02.g122950.t1.1,MRPS18 PF01084 PTHR13479,PTHR13479:SF27 - - - GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT1G07210.1 - Ribosomal protein S18 Cre17.g733300 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g17723.t1 PF00069 PTHR26266:SF146,PTHR26266 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT1G54960.1 ANP2,MAPKKK2,NP2 NPK1-related protein kinase 2 Cre09.g404201 PHC24,PHC10 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g9176.t1,PHC10,PHC24 PF12499 - - - - - - - - Cre01.g039050 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g873.t1 - - - - - - - - - Cre02.g078966 - 0 8 1.0 1.0 0 8 1.0 1.0 C Y - 16 - - g1437.t1 PF01434,PF00004 PTHR23076:SF6,PTHR23076 KOG0734 3.4.24.- K03798 GO:0004222,GO:0005524,GO:0006508 AT3G47060.1 ftsh7 FTSH protease 7 Cre10.g451300 EXN13 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 16 - - g11090.t1,EXN13 PF01612 PTHR13620 - - - GO:0003676,GO:0005622,GO:0006139,GO:0008408 AT2G32415.1 - Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain Cre03.g176866 NAP,NAP1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g3655.t1,NAP,NAP1 - - - - - - - - - Cre03.g145847 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g2957.t1,Cre01.g060150.t1.1,Cre01.g060150.t1.2 - PTHR12183 KOG4172 - - - AT3G06140.1 - RING/U-box superfamily protein Cre03.g153950 TRP12 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 Transient receptor potential ion channel protein Transient potential receptor channel g3136.t1,TRP12 PF00520 - - - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 - - - Cre09.g394658 LCI28 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 Low-CO2-induced aldose reductase Contains Aldo/keto reductase family (pfam00248.12). This family includes a number of K+ ion channel beta chain regulatory domains - these are reported to have oxidoreductase activity. Low-CO2 inducible gene revealed by cDNA array analyses. Acclimation to g9788.t1,Cre02.g130950.t1.1,Cre02.g130950.t1.2,LCI28 PF00248 PTHR11732:SF34,PTHR11732 KOG1577 1.1.1.21 K00011 GO:0016491,GO:0055114 AT2G37770.2 - NAD(P)-linked oxidoreductase superfamily protein Cre02.g096050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g1950.t1 PF03749 - - - - - - - - Cre11.g468450 cen1,VFL2 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Centrin present in monomeric inner arm dyneins b, e, and g Centrin (caltractin) present in monomeric inner arm dyneins b, e, and g. Component of flagellar inner arm dyneins and basal body/centriole-associated structures. The vfl2 mutation in this gene produces cells with variable numbers of flagella. This protei g11763.t1,Cre11.g468450.t1.1,VFL2,cen1 PF00036 PTHR23050,PTHR23050:SF41 KOG0028 - K10840 - AT3G50360.1 ATCEN2,CEN1,CEN2 centrin2 Cre07.g322600 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 13 - - g7453.t1 - - - - - - - - - Cre06.g267900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g6011.t1,Cre06.g267900.t1.1 PF03208 PTHR12859 KOG3142 - - - AT3G11397.1 PRA1.A3 prenylated RAB acceptor 1.A3 Cre06.g310601 TNP19 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g7188.t1,TNP19, g7188.t2,TNP19 PF07282 - - - - - - - - Cre09.g401350 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 12 - - g9238.t1,Cre09.g401350.t1.1 - - - - - - AT1G18060.1 - - Cre03.g145027 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g2915.t1 - - - - - - - - - Cre09.g388134 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g9605.t1,Cre02.g122750.t1.1,Cre02.g122750.t1.2 - - - - - - - - - Cre13.g564850 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g13897.t1 PF03547 - KOG2722 - - GO:0016021,GO:0055085 AT1G71090.1 - Auxin efflux carrier family protein Cre10.g428734 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g10591.t1,Cre69.g794000.t1.1 - - - - - - - - - Cre17.g730300 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g17648.t1,Cre17.g730300.t1.1 - - - - - - - - - Cre12.g557750 DGTT1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated - - - g13375.t1 PF03982 PTHR12317 KOG0831 2.3.1.20,2.3.1.75 K11160 GO:0016747 AT3G51520.1 - diacylglycerol acyltransferase family Cre03.g158150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3237.t1 PF00076,PF01805 PTHR23140 KOG0151 - K12842 GO:0003676,GO:0003723,GO:0006396 AT5G25060.1 - RNA recognition motif (RRM)-containing protein Cre03.g201000 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 9 - - g4305.t1 - - - - - - AT5G61450.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre06.g282800 ICL1 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 Isocitrate lyase Isocitrate lyase (EC 4.1.3.1); isocitrase; 98% identical to cDNA (AAB61446) [PMID: 9049260]; PMID: 19847013; Listed by Rolland et al. 2008 [PMID: 19451016] in a table of putative redox-regulated proteins identified by proteomic methods g6576.t1,Cre06.g282800.t1.1 PF00463 PTHR21631:SF3,PTHR21631 - - - GO:0003824,GO:0008152,GO:0004451,GO:0019752 AT3G21720.1 ICL isocitrate lyase Cre04.g220300 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 - - g4805.t1,Cre04.g220300.t1.1 PF00400 PTHR22847 KOG2096 - - - AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre03.g198550 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4118.t1,Cre03.g198550.t1.1, g4118.t2 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.2 ATMRK1 Protein kinase superfamily protein Cre10.g443150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g10899.t1,Cre10.g443150.t1.1 - - - - - - - - - Cre16.g660350 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 9 - - g15950.t1 PF08774,PF08797 PTHR15749:SF3,PTHR15749 KOG3227 - - GO:0016788,GO:0003676,GO:0008270,GO:0016818 AT1G48360.2 - zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides Cre13.g581750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g14286.t1,Cre13.g581750.t1.1 PF00400 - KOG0264 - - - AT5G58230.1 ATMSI1,MEE70,MSI1 Transducin/WD40 repeat-like superfamily protein Cre09.g400000 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g9269.t1 - - KOG2266 - - - - - - Cre06.g311550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g7207.t1 - - - - - - - - - Cre02.g115700 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g2395.t1,Cre02.g115700.t1.1 - - - - - - - - - Cre02.g089350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g1667.t1 - - - - - - - - - Cre07.g334250 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 15 - - g7784.t1 PF00856 PTHR12197:SF86,PTHR12197 - - - GO:0005515 AT1G26760.1 ATXR1,SDG35 SET domain protein 35 Cre16.g665800 SS4,SSS4 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 3 Soluble starch synthase ADP-glucose alpha-1,4 glucane alpha-4-glucanotransferase; catalyses the transfer of the glucosyl moiety of ADP-glc to the non-reducing end of a pre-existing alpha 1,4 linked chain; (AAC17971) g16069.t1,Cre16.g665800.t1.1,SSS4 PF00534,PF08323 PTHR12526,PTHR12526:SF17 - - - GO:0009058 AT4G18240.1 ATSS4,SS4,SSIV starch synthase 4 Cre09.g387950 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n downregulated 16 - - g9544.t1 PF00069 PTHR23257:SF303,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G06620.1 - PAS domain-containing protein tyrosine kinase family protein Cre06.g268150 CNK3 - 0 9 1.0 1.0 0 9 1.0 1.0 O n downregulated 9 NimA-related protein kinase NimA (never-in-mitosis) related kinase homolog 3 [gi:34334395, PMID: 15068267] g6016.t1,CNK3 PF00069 PTHR24362,PTHR24362:SF138 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT3G04810.1 ATNEK2,NEK2 NIMA-related kinase 2 Cre07.g325950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g7580.t1,Cre07.g325950.t1.1 PF03105 PTHR10783,PTHR10783:SF5 - - - - AT5G20150.1 ATSPX1,SPX1 SPX domain gene 1 Cre06.g284400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g6613.t1,Cre06.g284400.t1.1 PF07106 PTHR15938 KOG4603 - - - AT1G13330.1 AHP2 Arabidopsis Hop2 homolog Cre07.g357700 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 14 - - g8318.t1 - - - - - - - - - Cre12.g540450 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g13767.t1,Cre12.g540450.t1.1 - - - - - - - - - Cre16.g667150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g16316.t1,Cre16.g667150.t1.1 - - - - - - - - - Cre10.g446250 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 16 - - g10979.t1 PF00004 PTHR23077:SF9,PTHR23077 KOG0737 - K13339 GO:0005524 AT1G03000.1 PEX6 peroxin 6 Cre17.g740510 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 10 - - g17912.t1 PF00515 PTHR12558,PTHR12558:SF21 - - K03350 GO:0005515 AT3G16320.1 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein Cre01.g006766 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g176.t1,Cre01.g006750.t1.2 PF00078 PTHR10178,PTHR10178:SF42 - - - GO:0003723,GO:0003964,GO:0006278 - - - Cre08.g382560 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g9003.t1 PF03016,PF07974 PTHR11062,PTHR11062:SF12 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre05.g234646 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g5366.t1 - - - - - - - - - Cre05.g234647 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g5367.t1,Cre24.g769550.t1.1,Cre24.g769550.t1.2 - - - - K06950 - AT1G17330.1 - Metal-dependent phosphohydrolase Cre05.g234644 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g5364.t1,Cre24.g769700.t1.1,Cre24.g769700.t1.2 - - - - - - - - - Cre05.g234645 - 0 14 1.0 1.0 0 14 1.0 1.0 SP n - 13 - - g5365.t1,Cre24.g769650.t1.1 PF00999 PTHR11584,PTHR11584:SF4 - - - GO:0006812,GO:0015299,GO:0016021,GO:0055085 AT2G01980.1 ATNHX7,ATSOS1,SOS1 sodium proton exchanger, putative (NHX7) (SOS1) Cre05.g234642 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g5362.t1,Cre24.g769750.t1.1,Cre24.g769750.t1.2 PF07707 - - - - - - - - Cre05.g234643 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g5363.t1 - - - - - - - - - Cre05.g234640 - 0 25 1.0 1.0 0 25 1.0 1.0 O n - 16 - - g5360.t1,Cre24.g769850.t2.1, g5360.t2,Cre24.g769850.t3.1, g5360.t3,Cre24.g769850.t1.1 - - - - - - - - - Cre10.g466200 CYCAB1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 10 A/B-type cyclin Cyclin A/B homolog; A/B-type cyclin homolog. Novel A/B cyclin subfamily according to Bisova et al. (2005). g11427.t1 PF00134,PF02984 PTHR10177 KOG0653 - - GO:0005634 AT1G44110.1 CYCA1;1 Cyclin A1;1 Cre10.g452150 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated - - - g11107.t1,Cre10.g452150.t1.1 - - - - - - - - - Cre15.g638050 RAP9,CLR9,OPR70 - 0 1 1.0 nan 0 1 1.0 nan M n - - RAP-domain containing protein RAP-domain containing protein. The RNA-binding RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Previously annotated as CLR9 but with ambiguous overlap g15451.t1,CLR9,RAP9 PF08373 - - - - - - - - Cre10.g454650 RPC5 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11160.t1,Cre10.g454650.t1.1,RPC5 PF04801 PTHR12069 - - - GO:0003899,GO:0005634,GO:0006351 AT5G49530.1 - SIN-like family protein Cre07.g330400 KCN1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 Voltage-gated K+ channel Voltage-dependent 1-domain potassium channel (Shaker-like), alpha subunit; P-loop contains conserved motif for K+ selectivity g7689.t1,KCN1 PF00520 PTHR11537,PTHR11537:SF96 - - K04885 GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G32500.1 AKT5,KT5 K+ transporter 5 Cre06.g295250 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g6834.t1 PF01569 PTHR11247:SF3,PTHR11247 KOG3146 - - GO:0003824,GO:0016020 AT5G66450.1 - Phosphatidic acid phosphatase (PAP2) family protein Cre16.g676757 PTB8 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - Sodium/phosphate symporter Putative phosphate transporter, similar to yeast Pho89, Neurospora PHO4 probable Na+/Pi symporters; highest identity to PTB1 (60%) of the PTB family members. g16742.t1,Cre01.g066900.t2.1,PTB8, g16742.t2,Cre01.g066900.t1.1,PTB8 PF01384 PTHR11101:SF7,PTHR11101 KOG2493 - - GO:0005315,GO:0006817,GO:0016020 AT3G26570.2, AT3G26570.1 ORF02,PHT2;1 phosphate transporter 2;1 Cre13.g592350 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g14521.t1,Cre13.g592350.t1.1 - - - - - - - - - Cre16.g676750 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g16580.t1,Cre16.g676750.t1.1 - - - - - - - - - Cre07.g337750 EBM5 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g7857.t1,EBM5 PF00150 - - - - GO:0004553,GO:0005975 AT1G02310.1 MAN1 Glycosyl hydrolase superfamily protein Cre12.g532550 RPL13A,RPL13a - 0 1 1.0 nan 0 1 1.0 nan O n - - Ribosomal protein L13a, component of cytosolic 80S ribosome and 60S large subunit Cytosolic 80S ribosomal protein L13a; Cytosolic 60S large ribosomal subunit protein L13a g13103.t1,RPL13a PF00572 PTHR11545 KOG3204 - K02872 GO:0003735,GO:0005840,GO:0006412 AT3G07110.1 - Ribosomal protein L13 family protein Cre09.g412050 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated - - - g10202.t1 - - - - - - - - - Cre10.g448977 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g11037.t1,Cre10.g448977.t1.1 - - - - - - - - - Cre13.g589250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 9 - - g14456.t1,Cre13.g589250.t1.1 PF02582 PTHR16255 KOG2861 - - - AT1G69380.1 - Protein of unknown function (DUF155) Cre12.g538700 CPLD62 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated - - - g13245.t1,Cre12.g538700.t1.1 PF07766 PTHR14009 - - - - AT3G11560.2 - LETM1-like protein Cre05.g235060 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5401.t1 - - - - - - - - - Cre03.g179921 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n downregulated 15 - - g3727.t1,Cre73.g795000.t1.1,Cre73.g795000.t1.2 - - - - - - - - - Cre13.g574900 FAP228,GTR2 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 15 Glycosyltransferase Glycosyltransferase, possible 1,3-beta-D-glucan synthase. Flagellar Associated Protein similar to callose synthase, found in the flagellar proteome [PMID: 15998802]. Previously annotated as FAP228 g14130.t1,Cre13.g574900.t1.1,GTR2 PF02364 PTHR12741,PTHR12741:SF4 - 2.4.1.- K11000 GO:0000148,GO:0003843,GO:0006075,GO:0016020 AT1G06490.1 ATGSL07,atgsl7,gsl07 glucan synthase-like 7 Cre01.g008600 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - - - g217.t1 PF11051 - - - - GO:0006486 - - - Cre03.g168200 FAP69 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g3459.t1,Cre03.g168200.t1.1 - - - - - - - - - Cre06.g263900 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g5930.t1,Cre06.g263900.t1.1 - - - - - - - - - Cre02.g111700 EFH1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g2299.t1,Cre02.g111700.t1.1,EFH1 - - KOG0027 - - - AT4G21940.2 CPK15 calcium-dependent protein kinase 15 Cre03.g154425 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 - - g3147.t2,Cre03.g154450.t3.1, g3147.t1,Cre03.g154450.t2.1, g3147.t3,Cre03.g154450.t1.3 PF12348 PTHR21567,PTHR21567:SF21 - - - - AT2G20190.1 ATCLASP,CLASP CLIP-associated protein Cre12.g546850 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 1 - - g13617.t1,Cre12.g546850.t1.1 PF04117 PTHR11266,PTHR11266:SF4 - - - GO:0016021 AT2G14860.1 - Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Cre02.g073300 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g1297.t1 - PTHR11804,PTHR11804:SF5 - - - - AT5G51540.1 - Zincin-like metalloproteases family protein Cre09.g392300 NAT22 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g9445.t1,NAT22 PF00583 - - - - GO:0008080,GO:0008152 AT3G14980.1 - Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein Cre03.g148700 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g3024.t1,Cre03.g148700.t1.1 PF04720 - - - - - AT2G38820.2 - Protein of unknown function (DUF506) Cre03.g186550 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 7 - - g3865.t1 - PTHR15830 - - - - AT3G48470.1 EMB2423 embryo defective 2423 Cre02.g113700 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g2344.t1,Cre02.g113700.t1.1 PF02151,PF08755 - - - - GO:0003677,GO:0004518,GO:0006289 AT2G03390.1 - uvrB/uvrC motif-containing protein Cre03.g144164 RSE2 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 4 Intramembrane metalloprotease Intramembrane metalloprotease related to site-2 protease; contains M50 domain, with HExxH motif embedded in transmembrane helix; homologous to bacterial RseP/YaeL/PsoIVFB involved in transmembrane signaling; could be organelle-targeted, based on presence g2871.t1,Cre01.g056650.t1.1,Cre01.g056650.t1.2,RSE2 PF02163 PTHR22939,PTHR22939:SF62 - - - GO:0004222,GO:0006508 AT2G32480.1 ARASP ARABIDOPSIS SERIN PROTEASE Cre09.g411633 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g10191.t1,Cre09.g411650.t1.3 PF02135 - - - - GO:0003712,GO:0004402,GO:0005634,GO:0006355,GO:0008270 - - - Cre14.g622951 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g15014.t1 - - - - - - - - - Cre07.g336800 - 0 2 1.0 1.0 0 2 1.0 1.0 - n downregulated 11 - - g7837.t1 - - - - - - - - - Cre15.g636896 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 3 - - g15361.t1 PF01207 PTHR11082,PTHR11082:SF18 - 1.-.-.- K05539 GO:0008033,GO:0017150,GO:0050660,GO:0055114 AT5G47970.1 - Aldolase-type TIM barrel family protein Cre10.g453350 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g11130.t1,Cre10.g453350.t1.1 PF00097,PF04536 - - - - - AT5G20910.1 AIP2 RING/U-box superfamily protein Cre01.g041752 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g936.t1 - PTHR11584:SF253,PTHR11584 - - - - - - - Cre03.g189850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g3931.t1,Cre03.g189850.t1.1 PF00498 - - - - GO:0005515 - - - Cre12.g534250 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 6 - - g13139.t1,Cre12.g534250.t1.1 - - - - - - AT1G18060.1 - - Cre06.g252800 - 0 1 1.0 nan 0 1 1.0 nan SP n - 17 - - g5661.t1,Cre06.g252801.t1.3 PF01764 PTHR21493:SF9,PTHR21493 - - - GO:0004806,GO:0006629 AT5G18630.1 - alpha/beta-Hydrolases superfamily protein Cre09.g416616 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g10311.t1 - - - - - - - - - Cre08.g377300 - 0 4 1.0 1.0 0 4 1.0 1.0 M n upregulated 17 - - g8885.t1 PF03982 PTHR12317 - - - GO:0016747 AT3G51520.1 - diacylglycerol acyltransferase family Cre17.g724750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 14 - - g17527.t1,Cre17.g724750.t1.1 - - - - - - - - - Cre03.g169150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3482.t2,Cre03.g169150.t1.1, g3482.t1 PF00076 PTHR24012 KOG0117 - - GO:0003676 AT4G00830.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre02.g090700 MAPKKK8 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 10 Mitogen-Activated Protein Kinase Kinase Kinase Mitogen Activated Protein Kinase Kinase Kinase Homolog 8, putative g1696.t1,MAPKKK8 PF07714 PTHR23257:SF167,PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre01.g046250 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g1039.t1,Cre01.g046250.t1.1 - - - - - - - - - Cre09.g408750 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 - - g10131.t1,Cre09.g408750.t1.1 - - - - - - - - - Cre17.g704700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g17082.t1 PF01753 PTHR12298,PTHR12298:SF13 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre16.g680342 FAP110 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g16776.t1,Cre01.g068200.t1.1,Cre01.g068200.t1.2 - - - - - - - - - Cre12.g533600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 13 - - g13126.t1 PF05903 PTHR12378 KOG0324 - - - - - - Cre04.g213002 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g4719.t1 - - - - - - - - - Cre04.g213000 MAE12 - 0 11 1.0 1.0 0 11 1.0 1.0 M n upregulated 13 - - g4718.t2,MAE12, g4718.t1,Cre04.g213000.t1.1,MAE12 PF01554 PTHR11206:SF3,PTHR11206 KOG1347 - - GO:0006855,GO:0015238,GO:0015297,GO:0016020,GO:0055085 AT3G08040.1 ATFRD3,FRD3,MAN1 MATE efflux family protein Cre06.g283350 MRPS34 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 Putative mitochondrial ribosomal protein S34 Putative mitochondrial ribosomal protein S34, imported to mitochondria g6589.t1,MRPS34 - - - - - - - - - Cre15.g640250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g15392.t1, g15392.t2,Cre15.g640250.t1.1 PF04981 PTHR12746 KOG2613 - K07562 - AT2G03820.1 - nonsense-mediated mRNA decay NMD3 family protein Cre03.g211857 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 15 - - g4475.t1,Cre19.g756700.t1.1 - - - - - - AT4G28690.1 - - Cre06.g283600 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 6 - - g6594.t1,Cre06.g283600.t1.1 - - - - - - - - - Cre02.g078885 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - - - - g1434.t1,Cre64.g793058.t1.1,Cre64.g793058.t1.2 PF03810 PTHR10997:SF7,PTHR10997 KOG1993 - - GO:0006886,GO:0008565 AT3G08960.1 - ARM repeat superfamily protein Cre07.g334400 EXN10 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g7787.t1,Cre07.g334400.t1.1,EXN10 PF00929 - - - - - - - - Cre05.g244400 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g5246.t1 PF03407 - - - - - - - - Cre16.g654850 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g15830.t1 PF00069 PTHR23257:SF305,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre09.g399215 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 13 - - g9913.t1,Cre02.g136350.t1.1 - - KOG1003 - - - - - - Cre02.g102650 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 17 - - g2096.t1 PF00069 PTHR23257:SF361,PTHR23257 KOG1187 - - GO:0004672,GO:0005524,GO:0006468 AT1G08720.1 ATEDR1,EDR1 Protein kinase superfamily protein Cre10.g460350 PGA4 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g11287.t1,PGA4 PF01553 PTHR23063 - - - GO:0008152,GO:0008415 AT2G45670.1 - calcineurin B subunit-related Cre06.g258250 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g5805.t1 - - - - - - - - - Cre14.g628000 TMX1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 3 - - g15129.t1,Cre14.g628000.t1.1,TMX1 PF03054 PTHR11933 - 2.8.1.- K00566 GO:0005737,GO:0008033,GO:0016740 AT1G51310.1 - transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases Cre08.g374650 p44,TPR5,DII3 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g8826.t1,TPR5,p44 - PTHR10098:SF6,PTHR10098 - - - - AT3G11540.1 SPY Tetratricopeptide repeat (TPR)-like superfamily protein Cre03.g184900 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 16 - - g3832.t1,Cre03.g184900.t1.1 - PTHR11132,PTHR11132:SF14 - - - - - - - Cre07.g329750 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 4 - - g7671.t1,Cre07.g329750.t1.1 - - - - - - - - - Cre08.g370550 - 0 11 1.0 1.0 0 11 1.0 1.0 M n - 17 - - g8683.t1 PF01565,PF02913 PTHR11748:SF15,PTHR11748 KOG1232 - - GO:0016491,GO:0050660,GO:0003824 AT4G36400.1 - FAD-linked oxidases family protein Cre11.g475400 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 13 - - g11808.t1 PF01398 PTHR10410,PTHR10410:SF2 - - K11864 GO:0005515 AT1G80210.1 - Mov34/MPN/PAD-1 family protein Cre01.g040150 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 7 - - g896.t1,Cre01.g040150.t1.1 PF00069 PTHR13902,PTHR13902:SF12 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT1G64630.1 ATWNK10,WNK10 with no lysine (K) kinase 10 Cre02.g108100 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 8 - - g2216.t1 PF04389 PTHR12147 - - - GO:0006508,GO:0008233 AT1G67420.2 - Zn-dependent exopeptidases superfamily protein Cre01.g045500 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 16 - - g1018.t1,Cre01.g045500.t1.1 - - KOG0845 - - - - - - Cre14.g617800 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 1 - - g14884.t1 PF04515 PTHR12385,PTHR12385:SF3 - - - - AT4G38640.1 - Plasma-membrane choline transporter family protein Cre16.g675050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g16617.t1 - - - - - - - - - Cre02.g110550 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 13 - - g2269.t1 PF00249 PTHR10641,PTHR10641:SF40 - - - - AT3G48920.1 AtMYB45,MYB45 myb domain protein 45 Cre01.g001800 MLCK1 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 15 - - g44.t1,MLCK1 PF00069 PTHR24362,PTHR24362:SF25 KOG0583 2.7.11.1 K08857 GO:0004672,GO:0005524,GO:0006468 AT3G04810.1 ATNEK2,NEK2 NIMA-related kinase 2 Cre06.g303000 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g7014.t1 - PTHR23125 - - - - AT1G15740.1 - Leucine-rich repeat family protein Cre16.g676500 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g16586.t1,Cre16.g676500.t1.1 - - - - - - AT5G25770.1 - alpha/beta-Hydrolases superfamily protein Cre03.g205550 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g4201.t1 - - - - - - - - - Cre10.g448700 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g11031.t1,Cre10.g448700.t1.1 PF02201 PTHR13844 KOG2570 - K11650 GO:0005515 AT5G14170.1 CHC1 SWIB/MDM2 domain superfamily protein Cre08.g381850 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 12 - - g8985.t1,Cre08.g381850.t1.1 - - - - - - - - - Cre07.g353850 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g8232.t1,Cre07.g353850.t1.1 PF06027 PTHR23051 KOG4314 - - - AT3G07080.1 - EamA-like transporter family Cre07.g347980 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g8097.t2, g8097.t1 PF03109 PTHR10566,PTHR10566:SF10, PTHR10566 KOG1235 - K08869 - AT5G24810.1, AT4G24810.2 - ABC1 family protein, Protein kinase superfamily protein Cre05.g235850 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 14 - - g5422.t2, g5422.t1 - - - - - - - - - Cre01.g031875 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g721.t1,Cre01.g031900.t1.3 - - - - - - - - - Cre10.g428050 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 8 - - g10572.t1 - - - - - - - - - Cre01.g027350 TMG10 - 0 17 1.0 1.0 0 17 1.0 1.0 O n - 13 - - g625.t2,TMG10, g625.t1,Cre01.g027350.t1.1,TMG10, g625.t3,TMG10 PF00588 PTHR12029:SF11,PTHR12029 - - - GO:0003723,GO:0006396,GO:0008173 AT4G17610.1 - tRNA/rRNA methyltransferase (SpoU) family protein Cre02.g101300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g2067.t1,Cre02.g101300.t1.1 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 AT3G43700.1 ATBPM6,BPM6 BTB-POZ and MATH domain 6 Cre01.g029400 - 0 18 1.0 1.0 0 18 1.0 1.0 O n - 17 - - g669.t1,Cre01.g029400.t1.1 PF08016 - - - - - - - - Cre06.g278148 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g6293.t1,Cre13.g595900.t1.1,Cre13.g595900.t1.2 PF03446 PTHR22981,PTHR22981:SF13 KOG0409 - - GO:0016491,GO:0004616,GO:0006098,GO:0055114 AT1G17650.1 GLYR2,GR2 glyoxylate reductase 2 Cre16.g651600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g15761.t1 - - - - - - - - - Cre06.g278142 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 3 - - g6287.t1,Cre13.g595600.t1.1,Cre13.g595600.t1.2 PF04055,PF00919 PTHR11918 KOG2492 - - GO:0003824,GO:0051536,GO:0009451,GO:0051539 AT1G72090.1 - Methylthiotransferase Cre06.g278140 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 18 - - g6285.t1,Cre13.g595500.t1.1,Cre13.g595500.t1.2 PF00069 PTHR24356:SF124,PTHR24356 KOG0598 - - GO:0004672,GO:0005524,GO:0006468 AT1G53700.1 PK3AT,WAG1 WAG 1 Cre06.g278146 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 10 - - g6291.t1,Cre13.g595800.t1.1 - - - - - - - - - Cre06.g278147 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 1 - - g6292.t1,Cre13.g595850.t1.1,Cre13.g595850.t1.2 - - - - - - - - - Cre06.g278145 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 - - g6290.t1,Cre13.g595750.t1.1 - - - - - - - - - Cre16.g655515 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g15847.t1,Cre16.g655515.t1.1 - - KOG0811 - - - - - - Cre02.g114700 CYN17,RSP12 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, Radial spoke protein 12 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; found in the flagellum radial spoke stalk (RSP12) [PMID: 16507594] g2370.t1,Cre02.g114700.t1.1,CYN17 PF00160 PTHR11071:SF136,PTHR11071 KOG0880 - - GO:0003755,GO:0006457 AT2G15790.1 CYP40,SQN peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase Cre08.g358200 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 16 - - g8330.t1, g8330.t2 PF00069,PF07714 PTHR23257,PTHR23257:SF322 KOG2345 - - GO:0004672,GO:0005524,GO:0006468 AT4G23050.2, AT3G01490.1 - PAS domain-containing protein tyrosine kinase family protein, Protein kinase superfamily protein Cre07.g327800 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - - - - g7625.t1 PF01061,PF00005 PTHR19241,PTHR19241:SF87 KOG0061 - K05681 GO:0016020,GO:0005524,GO:0016887 AT2G01320.2 - ABC-2 type transporter family protein Cre12.g490750 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 9 - - g12170.t1 - - - - - - - - - Cre16.g687950 ETFA1,ETF1,ETFA - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 13 Electron transfer flavoprotein alpha subunit Electron transfer flavoprotein alpha-subunit-like, mitochondrial; The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It tr g16328.t1,Cre16.g687950.t1.1,ETF1,ETFA PF01012,PF00766 PTHR10909,PTHR10909:SF153 KOG3954 - K03522 - AT1G50940.1 ETFALPHA electron transfer flavoprotein alpha Cre04.g219400 DNJ30 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g4781.t1,Cre04.g219400.t1.1 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 AT5G19330.1 ARIA ARM repeat protein interacting with ABF2 Cre01.g024300 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g562.t1,Cre01.g024300.t1.1 PF01398,PF08969 PTHR12947 KOG2880 3.1.2.15 K11866 GO:0005515 AT1G48790.1 AMSH1 associated molecule with the SH3 domain of STAM 1 Cre10.g423350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g10471.t1,Cre10.g423350.t1.1 PF07052 PTHR13486:SF2,PTHR13486 - - - - AT1G02330.1 - - Cre12.g517550 RRM10 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12762.t1,RRM10 PF06962 PTHR10108,PTHR10108:SF414 - - - - AT1G16445.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre16.g658000 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g15900.t1 PF02492 PTHR13748,PTHR13748:SF23 - - - - AT1G80480.1 PTAC17 plastid transcriptionally active 17 Cre02.g141900 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g2653.t1,Cre02.g141900.t1.1 PF01105 PTHR22811 KOG1691 - - GO:0006810,GO:0016021 AT3G22845.1 - emp24/gp25L/p24 family/GOLD family protein Cre16.g683700 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 12 - - g16428.t1,Cre16.g683700.t1.1 PF03798 - - - - GO:0016021 - - - Cre12.g538950 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13250.t1,Cre12.g538950.t1.1 - PTHR13609 - - - - AT5G45740.1 - Ubiquitin domain-containing protein Cre06.g257400 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 15 - - g5785.t1,Cre06.g257400.t1.1 - - - - - - - - - Cre16.g679250 ELI1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 4 Early light-inducible protein - g16525.t1,Cre16.g679250.t1.1 PF00504 PTHR14154:SF1,PTHR14154 - - - - AT4G14690.1 ELIP2 Chlorophyll A-B binding family protein Cre16.g682250 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 - - g16458.t1 PF07707 - - - - - - - - Cre16.g682251 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g16793.t1,Cre01.g069010.t1.1,Cre01.g069010.t1.2 - PTHR22904,PTHR22904:SF165 - - - - AT5G65160.1 - tetratricopeptide repeat (TPR)-containing protein Cre16.g685700 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 10 - - g16382.t1,Cre16.g685700.t1.1 - - - - - - - - - Cre03.g178400 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g3694.t1 PF01753 - - - - GO:0008270 - - - Cre01.g030050 PRPL34 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Plastid ribosomal protein L34 Chloroplast ribosomal protein L34, imported to chloroplast g682.t1,Cre01.g030050.t1.1 PF00468 PTHR14503 KOG4612 - - GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT1G29070.1 - Ribosomal protein L34 Cre06.g255800 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g5749.t1 - - - - - - - - - Cre01.g040500 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 2 - - g905.t1,Cre01.g040500.t1.1 - PTHR12603 - 6.3.2.19 K10643 - AT3G48070.1 - RING/U-box superfamily protein Cre03.g202100 OPR18 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g4280.t1 - - - - - - - - - Cre10.g461400 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g11312.t1 PF00566 PTHR22957,PTHR22957:SF160 - - - GO:0005097,GO:0005622,GO:0032313 AT2G37290.1 - Ypt/Rab-GAP domain of gyp1p superfamily protein Cre07.g313650 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 18 - - g7259.t1, g7259.t2 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre17.g709700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g17189.t1,Cre17.g709700.t1.1 - - - - - - - - - Cre01.g037700 FAD3 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 4 Fatty acid desaturase; Linoleate desaturase Partial sequence of a fatty acid desaturase/linoleate desaturase; enzymes of this family catalyze the insertion of a double bond at the delta position of fatty acids; Vol 2 Chapter 2, table 1 Riekhof g845.t1,Cre01.g037700.t1.1,FAD3 PF00173,PF00487 PTHR19353,PTHR19353:SF7 KOG4232 - - GO:0020037,GO:0006629,GO:0016491,GO:0055114 AT2G46210.1 - Fatty acid/sphingolipid desaturase Cre17.g726700 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 16 - - g17571.t2, g17571.t1 PF00501 PTHR24095 KOG1176 - - GO:0003824,GO:0008152 AT1G55320.1 AAE18 acyl-activating enzyme 18 Cre04.g214600 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g4682.t1 - - - - - - - - - Cre12.g516600 STK25 - 0 6 1.0 1.0 0 6 1.0 1.0 M n downregulated 16 Serine/threonine protein kinase Serine/Threonine protein kinase g12742.t1,STK25 PF07714 PTHR23257:SF353,PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT3G24715.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre02.g081800 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 15 - - g1498.t1,Cre02.g081800.t1.1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre17.g735850 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17800.t1 - - - - - - - - - Cre11.g467742 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g11672.t1,Cre22.g764500.t1.1 PF04434 - - - - GO:0008270 - - - Cre11.g467741 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 11 - - g11671.t1,Cre22.g764512.t1.1,Cre22.g764512.t1.2 - - - - - - - - - Cre11.g467746 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11676.t1,Cre22.g764350.t1.1,Cre22.g764350.t1.2 PF04825 PTHR12585 - - - GO:0005515 AT5G16270.1 ATRAD21.3,SYN4 sister chromatid cohesion 1 protein 4 Cre02.g143467 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 4 - - g2833.t1,Cre38.g785400.t1.1 PF02902 - - - - GO:0006508,GO:0008234 AT3G06910.1 ULP1A UB-like protease 1A Cre11.g467745 GCP3 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Gamma tubulin interacting protein Putative gamma tubulin ring complex protein 3 SPC97/DGRIP91 g11675.t1,Cre22.g764400.t1.1,GCP3 PF04130 PTHR19302:SF14,PTHR19302 KOG2000 - - GO:0005856,GO:0007020,GO:0000226,GO:0000922,GO:0005815 AT5G06680.1 ATGCP3,ATSPC98,GCP3,SPC98 spindle pole body component 98 Cre12.g528350 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 3 - - g13011.t1,Cre12.g528350.t1.1 PF00415 PTHR22870 - - - - AT5G63860.1 UVR8 Regulator of chromosome condensation (RCC1) family protein Cre11.g467748 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g11678.t1 - - - - - - - - - Cre03.g196900 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g4078.t1,Cre03.g196900.t1.1 PF00635 PTHR10809,PTHR10809:SF6 - - - GO:0005198 AT3G60600.1 (AT)VAP,VAP,VAP27,VAP27-1 vesicle associated protein Cre06.g258400 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5809.t1,Cre06.g258400.t1.1 PF08737 PTHR12507,PTHR12507:SF2 - - - - AT1G50120.1 - - Cre17.g741800 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g17941.t1 - - - - - - - - - Cre10.g444700 SBE3 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 6 Starch Branching Enzyme Starch branching enzyme (SBE); SBE catalyses the formation of alpha-1,6 linkages within the polymer by cleaving a preexisting linear chain and transferring the fragment at the non reducing end of the cleaved glucan to an alpha-1,6 position g10933.t1 PF00128,PF02806,PF02922 PTHR10357:SF27,PTHR10357 KOG0470 2.4.1.18 K00700 GO:0003824,GO:0005975,GO:0043169,GO:0004553 AT5G03650.1 SBE2.2 starch branching enzyme 2.2 Cre01.g015550 DDA1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 - - g374.t1,DDA1 PF03328 - - - - GO:0006725,GO:0016830 AT4G10750.1 - Phosphoenolpyruvate carboxylase family protein Cre13.g587000 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g14402.t1,Cre13.g587000.t1.1 PF08164 PTHR15565 KOG2773 - - GO:0005634 AT5G61330.1 - rRNA processing protein-related Cre17.g701150 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g17000.t1 - - - - - - - - - Cre02.g083180 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 9 - - g1529.t1 - - - - - - - - - Cre02.g108350 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 17 - - g2221.t1,Cre02.g108350.t1.1 PF00249 PTHR24683,PTHR24683:SF38 - - - - AT3G09230.1 AtMYB1,MYB1 myb domain protein 1 Cre12.g493404 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 17 - - g12114.t1,Cre86.g796650.t1.1 PF01384 PTHR11101:SF7,PTHR11101 - - - GO:0005315,GO:0006817,GO:0016020 AT3G26570.1 ORF02,PHT2;1 phosphate transporter 2;1 Cre12.g535476 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g13171.t1 - - - - - - - - - Cre04.g230242 MOT40 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 12 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g5039.t1,Cre83.g796300.t1.1,Cre83.g796300.t1.2,MOT40 PF05250 - - - - - - - - Cre13.g603750 KCA1 - 0 4 1.0 1.0 0 4 1.0 1.0 C n downregulated 17 - - g14568.t1,KCA1 PF03493,PF07885 PTHR10027 KOG4462 - K04947 GO:0006813,GO:0015269,GO:0016020 AT1G02510.1 ATKCO4,ATTPK4,KCO4,TPK4 Outward rectifying potassium channel protein Cre17.g697450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 - - g16914.t1,Cre17.g697450.t1.1 PF10255 PTHR13242 KOG3677 - - - AT5G25754.1 - RNA polymerase I-associated factor PAF67 Cre02.g086000 ARS8 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g1592.t1,ARS8 PF00884 PTHR10342:SF2,PTHR10342 - - - GO:0008152,GO:0008484 - - - Cre04.g212050 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 10 - - g4738.t1 PF00498 - KOG1003 - - GO:0005515 - - - Cre01.g035700 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 6 - - g804.t1,Cre01.g035700.t1.1 - - - - - - - - - Cre12.g544950 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13660.t1,Cre12.g544950.t1.1 - - - - - - - - - Cre05.g241600 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 15 - - g5323.t1,Cre05.g241600.t1.1 - - - - - - - - - Cre10.g460466 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g11289.t1 - - - - - - - - - Cre06.g285100 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 1 - - g6628.t1 - - - - - - - - - Cre07.g330300 - 0 7 1.0 1.0 0 7 1.0 1.0 O n upregulated 15 - - g7687.t1,Cre07.g330300.t1.1 PF00076 PTHR24012:SF14,PTHR24012 KOG4205 - K14411 GO:0003676 AT5G47620.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre06.g286450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g6656.t1,Cre06.g286450.t1.1 PF00400,PF10313 PTHR22841,PTHR22841:SF15 KOG4532 - - - AT3G13340.1 - Transducin/WD40 repeat-like superfamily protein Cre04.g211950 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g4740.t1 PF03016 PTHR11062,PTHR11062:SF20 - - - GO:0016020 AT5G03795.1 - Exostosin family protein Cre02.g145100 FAP39 - 0 11 1.0 1.0 0 11 1.0 1.0 O n downregulated 18 P-type ATPase/cation transporter, flagellar associated P-type ATPase/cation transporter, found in the flagellar proteome [PMID: 15998802]; similar to Ca2+ transporting ATPase; related to cation transporting ATPase; plasma membrane calcium-transporting ATPase 3 (PMCA3) (Plasma membrane calcium pump isoform 3). g2567.t1 PF00689,PF00702,PF00690,PF00122 PTHR24093:SF169,PTHR24093 KOG0204 3.6.3.8 K05850 GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT4G29900.1 ACA10,ATACA10,CIF1 autoinhibited Ca(2+)-ATPase 10 Cre02.g106300 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g2179.t1,Cre02.g106300.t1.1 PF07946 PTHR12883 KOG2357 - - - AT4G24330.1 - Protein of unknown function (DUF1682) Cre08.g368750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 - - g8642.t1 PF00023 - - - - GO:0005515 AT4G32500.1 AKT5,KT5 K+ transporter 5 Cre08.g370300 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g8678.t1,Cre08.g370300.t1.1 PF10163 PTHR12514:SF5,PTHR12514 KOG4479 - K11368 - AT3G27100.1 - - Cre09.g414300 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 - - g10260.t1,Cre09.g414300.t1.1 - PTHR26392,PTHR26392:SF98 - - - - - - - Cre12.g520072 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g12815.t1,Cre12.g520072.t1.1 - - - - - - - - - Cre07.g342050 VTI3,NPSN1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Endosomal Qb-SNARE, Npsn-family (plant/protist-specific) (Qb.III.d) Endosomal Qb-SNARE, Npsn-family (plant/protist-specific) (Qb.III.d). Expressed Protein. Class Qb.III.d SNARE, involved in Golgi-to-early endosome trafficking (PMID: 17596510). Previously annotated as NPSN1 g7945.t1,Cre07.g342050.t1.1,NPSN1,VTI3 PF12352 PTHR21230:SF2,PTHR21230 KOG1666 - K08494 - AT2G35190.1 ATNPSN11,NPSN11,NSPN11 novel plant snare 11 Cre10.g451850 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g11100.t1 PF00004 PTHR23074,PTHR23074:SF19 KOG0739 - - GO:0005524 AT1G80350.1 AAA1,ATKTN1,BOT1,ERH3,FRA2,FRC2,FTR,KTN1,LUE1 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre09.g389060 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 16 - - g9631.t1,Cre02.g124000.t1.1 - - - - - - - - - Cre01.g013250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g325.t1 - PTHR14269:SF4,PTHR14269 - - - - AT3G45740.1 - hydrolase family protein / HAD-superfamily protein Cre03.g171600 XPP - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g3537.t1,XPP PF01975 - - - - GO:0016787 AT4G14930.1 - Survival protein SurE-like phosphatase/nucleotidase Cre12.g534700 FKB19 - 0 1 1.0 nan 0 1 1.0 nan SP Y - 4 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase); probably directed to thylakoid lumen (homology to AtFKBP19 and bipartite cTP with RR motif) g13150.t1,Cre12.g534700.t1.1 PF00254 PTHR10516 KOG0552 - - GO:0006457 AT5G13410.1 - FKBP-like peptidyl-prolyl cis-trans isomerase family protein Cre07.g318426 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 12 - - g7361.t1 - - - - - - - - - Cre16.g671500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g16289.t1,Cre16.g671500.t1.1 - - - - - - AT3G19990.1 - - Cre01.g038700 CLV5 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - - - - g866.t1,Cre01.g038700.t1.1,CLV5 PF00571,PF00654 PTHR11689:SF11,PTHR11689 KOG0474 - - GO:0005515,GO:0005247,GO:0006821,GO:0016020,GO:0055085 AT5G26240.1 ATCLC-D,CLC-D chloride channel D Cre10.g450450 FAP18 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 Flagellar Associated Protein, serine endopeptidase Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]; high E/A/P content. Similar to IgA-specific serine peptidase g11070.t1,Cre10.g450450.t1.1 - - - - - - - - - Cre02.g087750 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 16 - - g1631.t1,Cre02.g087750.t1.1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT2G35050.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre06.g310950 FAO7 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 18 - - g7195.t1,Cre06.g310950.t1.1,FAO7 PF01266 PTHR13847:SF20,PTHR13847 - - - GO:0016491 - - - Cre11.g479350 - 0 11 1.0 1.0 0 11 1.0 1.0 O n downregulated 13 - - g11900.t1, g11900.t2 - - KOG4462 - - - AT5G49960.1 - - Cre17.g699050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g16955.t1, g16955.t2, g16955.t3 - - - - - - - - - Cre02.g084400 PHX4 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 11 - - g1557.t1,Cre02.g084400.t1.1,PHX4 PF03171 PTHR10869 KOG1591 - - GO:0016491 AT3G06300.1 AT-P4H-2 P4H isoform 2 Cre17.g700950 FDX5 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 Apoferredoxin Fe2S2 containing redox protein, predicted chloroplast localization g16996.t1,Cre17.g700950.t1.1 PF00111 - - - - GO:0009055,GO:0051536 AT1G60950.1 ATFD2,FED A 2Fe-2S ferredoxin-like superfamily protein Cre13.g606800 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g14630.t1,Cre13.g606800.t1.1 PF02698 - - - - - - - - Cre03.g146207 MPA1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 Metallophosphoesterase, phosphate-repressible Putative phosphatase, induced during phosphate deficiency, regulated by the PSR1 transcription factor [PMID: 16400166]. g2975.t1,Cre01.g061000.t1.1,Cre01.g061000.t1.2,MPA1 PF00149 - KOG1432 - - GO:0016787 AT5G63140.1 ATPAP29,PAP29 purple acid phosphatase 29 Cre06.g282350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g6567.t1 - - - - - - - - - Cre17.g744097 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 10 - - g17998.t1,Cre20.g760550.t1.1,Cre20.g760550.t1.2 PF05686 PTHR12203 - - - - - - - Cre16.g668500 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g16266.t1 - - - - - - - - - Cre06.g273800 - 0 4 1.0 1.0 0 4 1.0 1.0 M n upregulated 15 - - g6142.t1,Cre06.g273800.t1.1 PF00009,PF03144 PTHR23115,PTHR23115:SF49 KOG1143 - - GO:0003924,GO:0005525 - - - Cre11.g481093 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g11943.t1 - - - - - - - - - Cre06.g289300 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 15 - - g6713.t1 - - - - - - - - - Cre03.g199150 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g4345.t1,Cre03.g199150.t1.1 PF01370 PTHR12126,PTHR12126:SF2 KOG4288 - - GO:0003824,GO:0044237,GO:0050662 AT5G10730.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre09.g391400 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g9464.t1 - - - - - - - - - Cre12.g545150 - 0 1 1.0 nan 0 1 1.0 nan M n - 5 - - g13656.t1 PF01417 PTHR21514 - - - - AT3G16270.1 - ENTH/VHS family protein Cre14.g619700 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g14932.t1 - - - - - - - - - Cre01.g023300 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 7 - - g537.t1,Cre01.g023300.t1.1 PF01408 PTHR22604,PTHR22604:SF45 KOG2742 - - GO:0016491 AT3G20790.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre07.g320700 CYG11 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - Adenylate/guanylate cyclase C terminal domain similar to guanylate cyclase 1 from Homo sapiens g7415.t1 PF07701,PF00211,PF07700 PTHR11920:SF143,PTHR11920 KOG4171 4.6.1.2 K12319 GO:0004383,GO:0006182,GO:0009190,GO:0016849,GO:0035556,GO:0020037 - - - Cre01.g050800 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 10 - - g1125.t1 - - - - - - - - - Cre13.g563476 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g13865.t1,Cre13.g563475.t1.2 PF02338 - - - - - - - - Cre13.g592250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g14519.t1,Cre13.g592250.t1.1 - - - - - - - - - Cre16.g667350 CAV6 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 16 Voltage-gated Ca2+ channel, alpha subunit Voltage-dependent 4-domain calcium channel, alpha subunit; may exhibit altered ion selectivity as conserved P-loop loci differ from mammalian Ca2+ channels (PMID: 8968582) g16310.t1,CAV6 PF00520 PTHR10037:SF138,PTHR10037 - - K05315 GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G03560.1 ATCCH1,ATTPC1,FOU2,TPC1 two-pore channel 1 Cre01.g022650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g522.t1,Cre01.g022650.t1.1 PF00795 PTHR23088 KOG0808 3.5.1.6 K01431 GO:0006807,GO:0016810 AT5G64370.1 BETA-UP,PYD3 beta-ureidopropionase Cre06.g296050 FMO6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 Flavin-containing monooxygenase Uses NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification; linked to FMO3 and FMO7 g6848.t1,FMO6 PF00743 PTHR23023,PTHR23023:SF22 KOG1399 - - GO:0004499,GO:0050660,GO:0050661,GO:0055114 AT1G19250.1 FMO1 flavin-dependent monooxygenase 1 Cre16.g672850 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 9 - - g16666.t1 - PTHR23130:SF19,PTHR23130 - - - - AT3G07570.1 - Cytochrome b561/ferric reductase transmembrane with DOMON related domain Cre16.g673100 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 16 - - g16662.t1 - - - - - - - - - Cre06.g295500 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g6840.t1,Cre06.g295500.t1.1 PF00657 - - - - GO:0006629,GO:0016788 - - - Cre14.g626100 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 17 - - g15079.t1 - - - - - - - - - Cre10.g456851 TMG4 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g11210.t1,Cre10.g456850.t1.3,TMG4 PF01746 PTHR13563,PTHR13563:SF6 KOG2967 - - - AT5G47680.1 - - Cre17.g727850 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 10 - - g17595.t1 - - - - - - - - - Cre07.g350867 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g8163.t2, g8163.t1 PF00097 PTHR22764 KOG1493 - - - AT2G35000.1 - RING/U-box superfamily protein Cre14.g623550 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g15027.t1 - PTHR23402,PTHR23402:SF1 - - - - - - - Cre17.g731581 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g17680.t1 - - - - - - - - - Cre10.g452350 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 12 - - g11111.t1 - - - - - - - - - Cre03.g176651 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g3650.t1,Cre03.g176650.t1.3 PF00249,PF01398 PTHR12802,PTHR12802:SF19 - - K11865 GO:0005515 AT1G01060.1 LHY,LHY1 Homeodomain-like superfamily protein Cre07.g326950 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g7603.t1 PF01588 PTHR11586 KOG2241 - - GO:0000049 AT3G59980.1 - Nucleic acid-binding, OB-fold-like protein Cre17.g708750 NSG1 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 8 - - g17170.t1,Cre17.g708750.t1.1,NSG1 - - - - - - - - - Cre13.g588050 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g14425.t1,Cre13.g588050.t1.1 PF00076 - - - - GO:0003676 - - - Cre13.g580600 ATT1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 - - g14262.t1,Cre13.g580600.t1.1,ATT1 PF04377,PF04376 PTHR21367 - 2.3.2.8 K00685 GO:0004057,GO:0016598 AT5G05700.1 ATATE1,ATE1,DLS1 arginine-tRNA protein transferase 1 Cre07.g325759 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK14 g7573.t1,Cre26.g774000.t1.1 PF00069 PTHR23257:SF323,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G01490.1 - Protein kinase superfamily protein Cre09.g397803 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g9327.t1 - PTHR23023 - - - - AT1G62560.1 FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 Cre07.g325756 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g7570.t1,Cre26.g773850.t1.1 - - - - - - - - - Cre07.g325755 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g7569.t1,Cre26.g773800.t1.1,Cre26.g773800.t1.2 PF03795 - - - - - - - - Cre07.g325754 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g7568.t1,Cre26.g773750.t1.1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre09.g397808 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g9874.t1,Cre02.g134850.t1.1,Cre02.g134850.t1.2 - - - - - - - - - Cre07.g325751 FAP258 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 Similar to Flagellar Associated Protein FAP258 Similar to Flagellar Associated Protein FAP258 that is found in the flagellar proteome [PMID: 15998802]. Overlaps with FAP258 gene models from v3 g7565.t1,Cre26.g773650.t1.1,Cre26.g773650.t1.2 - - - - - - - - - Cre06.g283550 CRC2 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 11 - - g6593.t1,CRC2 - PTHR10891,PTHR10891:SF41 KOG0028 - - - AT3G50360.1 ATCEN2,CEN1,CEN2 centrin2 Cre01.g037550 - 0 15 1.0 1.0 0 15 1.0 1.0 O n - 11 - - g842.t1 - - - - - - - - - Cre01.g032700 GLK1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 Glucokinase Glucokinase; EC:2.7.1.2; Glucose Kinase; similar to Nostoc glucokinase (GenBank BAB74672); Target-P weakly predicts an organelle target sequence g739.t1,Cre01.g032700.t1.1 PF02685 - - - - GO:0004340,GO:0005524,GO:0006096,GO:0051156 - - - Cre02.g098600 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g2005.t2, g2005.t1 PF00069 PTHR23257:SF341,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre12.g513800 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g12684.t1,Cre12.g513800.t1.1 - - - - - - - - - Cre04.g217925 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4556.t1,Cre03.g210400.t1.1 - PTHR23244,PTHR23244:SF38 - - - - AT5G50310.1 - Galactose oxidase/kelch repeat superfamily protein Cre09.g395400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g9382.t1 - - - - - - - - - Cre04.g217921 COPB1 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 Beta subunit of COP-I complex Expressed Protein. Beta-COP. Subunit of COP-I complex involved in vesicle coat formation. g4552.t1,Cre03.g210600.t1.1,Cre03.g210600.t1.2,COPB1 PF01602,PF07718 PTHR10635 KOG1058 - - GO:0006886,GO:0016192,GO:0030117,GO:0005198,GO:0030126 AT4G31480.1 - Coatomer, beta subunit Cre04.g217920 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g4551.t1,Cre03.g210650.t1.1 PF01753 PTHR13244 - - - GO:0008270 - - - Cre04.g217922 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g4553.t1,Cre03.g210550.t1.1,Cre03.g210550.t1.2 PF00097 PTHR12477,PTHR12477:SF37 KOG1734 6.3.2.19 K10601 - AT3G16090.1 - RING/U-box superfamily protein Cre04.g217929 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - Sulfite oxidase Sulfite oxidase, mitochondrial precursor; related to animal homologs, possibly molybdopterin binding. Previously annotated as SUOX1 g4560.t1,Cre03.g210200.t1.1 PF03404,PF00174,PF00173 PTHR19372 KOG0535 1.8.3.1 K00387 GO:0016491,GO:0030151,GO:0055114,GO:0009055,GO:0020037 AT3G01910.1 AT-SO,AtSO,SOX sulfite oxidase Cre04.g217928 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g4559.t1,Cre03.g210250.t1.1,Cre03.g210250.t1.2 PF00069 PTHR24362:SF161,PTHR24362 - - - GO:0004672,GO:0005524,GO:0006468 AT3G01090.1 AKIN10,KIN10,SNRK1.1 SNF1 kinase homolog 10 Cre03.g155350 PPO4 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 16 - - g3167.t1,Cre03.g155350.t1.1,PPO4 PF01243,PF00175 - - - - GO:0010181,GO:0016491,GO:0055114 - - - Cre16.g674450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g16631.t1,Cre16.g674450.t1.1 PF04117 PTHR11266 - - K13349 GO:0016021 AT5G19750.1 - Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Cre01.g034800 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g785.t1 - PTHR21477,PTHR21477:SF8 - - - - AT3G49790.1 - Carbohydrate-binding protein Cre08.g359850 FBB11 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 Flagellar/basal body protein Conserved protein of unknown function, found in ciliated organisms; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation g8428.t1,FBB11 - PTHR21490 - - - - - - - Cre12.g488200 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g12221.t1 - - - - - - - - - Cre12.g528000 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g13004.t1,Cre12.g528000.t1.1 PF00571 PTHR13780 KOG1764 - - GO:0005515 - - - Cre15.g636300 CPN2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 Tubulin folding cofactor B - g15349.t1,Cre15.g636300.t1.1,CPN2 PF01302 PTHR18916,PTHR18916:SF44 KOG3206 - - - AT3G10220.1 - tubulin folding cofactor B Cre10.g453400 MSC4,MSCL1 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - - Predicted protein with mechanosensitive ion channel domain Protein of unknown function with mechanosensitive ion channel (MSC) like domain. Previously annotated as MSCL1 g11131.t1,MSC4,MSCL1 PF00924 - - - - GO:0016020,GO:0055085 AT5G12080.1 ATMSL10,MSL10 mechanosensitive channel of small conductance-like 10 Cre01.g018700 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 12 - - g440.t1 - - - - - - - - - Cre12.g524550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g12914.t1 PF10294 PTHR14614 KOG2793 - - - AT1G08125.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre10.g458183 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g11239.t1 PF03405 - - - - GO:0006631,GO:0045300,GO:0055114 AT3G02630.1 - Plant stearoyl-acyl-carrier-protein desaturase family protein Cre14.g610700 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g14723.t1 PF12499 - - - - - - - - Cre09.g405050 ATPVD2,ATPvD2 - 0 1 1.0 nan 0 1 1.0 nan C n - 2 Vacuolar ATP synthase subunit D V-ATPase D subunit; Vacuolar proton pump D subunit; Vacuolar H+-ATPase V1 sector, subunit D g9152.t1,Cre09.g405050.t1.1,ATPVD2,ATPvD2 PF01813 PTHR11671 KOG1647 3.6.3.14 K02149 GO:0015991,GO:0033178,GO:0042626,GO:0046961 AT3G58730.1 - vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) Cre06.g263250 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5914.t1 - - - - - - - - - Cre06.g299500 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g6927.t1,Cre06.g299500.t1.1 - - - - - - - - - Cre01.g011660 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 - - g291.t2,Cre01.g011700.t2.1, g291.t1,Cre01.g011700.t1.2 PF00188 PTHR10334 - - - - AT4G33730.1 - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Cre03.g161150 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 10 - - g3303.t1 PF12499 - - - - - - - - Cre09.g401960 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g10005.t1,Cre02.g139750.t1.1 PF00685 PTHR11783:SF15,PTHR11783 KOG1584 - - GO:0008146 AT2G03770.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre16.g661900 HEL61 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g15984.t1,HEL61 PF00271,PF00270 PTHR24031,PTHR24031:SF28 KOG0342 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT5G08610.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre02.g097200 SRR14 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g1975.t1,SRR14 - - - - - - - - - Cre09.g389851 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - - - - g9501.t1 - - - - - - - - - Cre09.g408825 XPA2 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 - - g10133.t1,XPA2 PF01321,PF02810,PF02338 PTHR12419 - - - GO:0016787 AT5G67170.1 - SEC-C motif-containing protein / OTU-like cysteine protease family protein Cre09.g402700 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g9207.t1,Cre09.g402700.t1.1 PF00999 PTHR10110:SF20,PTHR10110 - - - GO:0006812,GO:0015299,GO:0016021,GO:0055085 AT3G06370.1 ATNHX4,NHX4 sodium hydrogen exchanger 4 Cre03.g171850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g3542.t1 - - - - - - - - - Cre13.g585950 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 7 - - g14380.t1,Cre13.g585950.t1.1 - PTHR10588,PTHR10588:SF29 - - - - - - - Cre09.g399150 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g9292.t1,Cre09.g399150.t1.1 - - - - - - - - - Cre16.g680150 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 16 - - g16505.t1 - - - - - - - - - Cre13.g606050 TSY1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 4 - - g14615.t1,Cre13.g606050.t1.1,TSY1 PF00579,PF01479 PTHR11766 KOG2623 6.1.1.1 K01866 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418,GO:0004831,GO:0006437,GO:0003723 AT3G02660.1 emb2768 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial Cre02.g142106 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 15 - - g2753.t1 - - - - - - - - - Cre02.g112050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g2306.t1 - - - - - - - - - Cre16.g693950 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 10 - - g15598.t1 PF09118,PF07250 - - - - - AT5G19580.1 - glyoxal oxidase-related protein Cre02.g142100 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 17 - - g2649.t1 - - - - - - - - - Cre01.g028101 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g642.t1,Cre01.g028100.t1.2 - - - - - - - - - Cre17.g744247 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g18001.t1,Cre20.g760400.t1.1 PF07034 - - - - GO:0003677,GO:0005664,GO:0006260 - - - Cre03.g187000 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g3874.t1 PF12325,PF12329 - - - - - AT1G79830.1 GC5 golgin candidate 5 Cre12.g556300 FBB5 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Flagellar/basal body protein Conserved protein found in ciliated organisms, with unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation g13406.t1,Cre12.g556300.t1.1,FBB5 - - - - - - - - - Cre12.g525200 NOP56 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 Nucleolar protein, Component of C/D snoRNPs Structural Component of C/D snoRNPs. Required for pre-Ribosomal RNA processing and snoRNA guided pre-rRNA methylation g12927.t1,Cre12.g525200.t1.1,NOP56 PF08060,PF08156,PF01798 PTHR10894 KOG2573 - K14564 - AT1G56110.1 NOP56 homolog of nucleolar protein NOP56 Cre06.g289150 MTP5 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 14 Cation efflux transporter, membrane protein CDF protein family, related to HsZnT9 and AtMTP7, PMID: 15710683 g6711.t1 PF01545 PTHR13414 - - - GO:0006812,GO:0008324,GO:0016021,GO:0055085 AT1G51610.1 - Cation efflux family protein Cre10.g448350 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g11024.t1 - PTHR10361,PTHR10361:SF0 - - - GO:0006814,GO:0008508,GO:0016020 - - - Cre13.g589870 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 8 - - g14469.t1 PF00149 - - - - GO:0016787 - - - Cre01.g041550 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g930.t1 PF07714 PTHR23257 - - - GO:0004672,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre02.g090850 CLPB3 - 0 1 1.0 nan 0 1 1.0 nan C n - 2 ClpB chaperone, Hsp100 family ClpB chaperone, Hsp100 family; probably chloroplastic or mitochondrial, by homology to At5g15450 and At2g25140 (PMID: 17144892) g1698.t1 PF02861,PF00004,PF07724,PF10431 PTHR11638:SF18,PTHR11638 KOG1051 - K03695 GO:0019538,GO:0005524 AT5G15450.1 APG6,CLPB-P,CLPB3 casein lytic proteinase B3 Cre10.g435650 HPT1 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 15 Hexose/glycerol-3-phosphate transporter Membrane hexose/glycerol-3-phosphate transporter, Major Facilitator Superfamily; similarity to bacterial uhpC protein, with dual transport and sensing role for glucose-6-phosphate, and to putative glycerol-3-phosphate transporter of Cyanidioschyzon merola g10743.t1,HPT1 PF07690 PTHR11662:SF86,PTHR11662 KOG2533 - - GO:0016021,GO:0055085 AT1G30560.1 - Major facilitator superfamily protein Cre01.g040600 - 0 10 1.0 1.0 0 10 1.0 1.0 M n - 15 - - g910.t1 - - - - - - - - - Cre07.g342552 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 - - g7935.t3,g20001.t1,Cre07.g342500.t1.3 - - - - - - - - - Cre07.g342551 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 2 - - g7935.t2,Cre07.g342506.t1.2 PF00179 - KOG0417 - - GO:0016881 AT5G56150.1 UBC30 ubiquitin-conjugating enzyme 30 Cre02.g097050 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 11 - - g1972.t1,Cre02.g097050.t1.1 PF01697 - - - - - AT3G27330.1 - zinc finger (C3HC4-type RING finger) family protein Cre12.g533426 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g13122.t1 - - - - - - - - - Cre02.g145600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g2552.t1, g2552.t2 - - - - - - - - - Cre09.g398200 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 1 - - g9318.t2,Cre09.g398200.t1.1, g9318.t1 PF00612,PF01344 PTHR23244,PTHR23244:SF38 KOG1230 - - GO:0005515 AT5G50310.1 - Galactose oxidase/kelch repeat superfamily protein Cre03.g205697 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 13 - - g4418.t1,Cre19.g754250.t1.1 PF00560 PTHR23155:SF37,PTHR23155 KOG0472 - - GO:0005515 AT4G20140.1 GSO1 Leucine-rich repeat transmembrane protein kinase Cre09.g400700 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 8 - - g9254.t1 - - - - - - - - - Cre09.g400701 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g9970.t1,Cre02.g138100.t1.1 - - - - - - - - - Cre10.g438150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g10793.t1,Cre10.g438150.t1.1 PF00097 - - - - - AT1G67180.1 - zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein Cre02.g117400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g2433.t1 - - - - - - - - - Cre01.g002150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g49.t1,Cre01.g002150.t1.1 - - - - - - - - - Cre16.g691550 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g15650.t1,Cre16.g691550.t1.1 - - - - - - - - - Cre12.g551650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g13510.t1,Cre12.g551650.t1.1 - - - - - - - - - Cre07.g351650 FAP20,BUG22 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG22 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400] g8180.t1,BUG22 PF05018 PTHR12458 KOG3213 - - - AT3G12300.1 - - Cre02.g101635 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 1 - - g2073.t1,Cre02.g101635.t1.1 - - - - - - - - - Cre13.g591200 HTB38 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Histone H2B Replication-linked Histone H2B g14498.t1,Cre13.g591200.t1.1,HTB38 PF00125 PTHR23428 KOG1744 - K11252 GO:0003677,GO:0000786,GO:0005634,GO:0006334 AT3G45980.1 H2B,HTB9 Histone superfamily protein Cre01.g032139 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g727.t1,Cre01.g032139.t1.1 PF00400 PTHR22850:SF2,PTHR22850 - - - - AT1G19750.1 - Transducin/WD40 repeat-like superfamily protein Cre14.g626350 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 1 - - g15084.t1,Cre14.g626350.t1.1 PF04751 - - - - - - - - Cre06.g292500 CYN23b,CYN23 - 0 1 1.0 nan 0 1 1.0 nan SP Y - 11 Cyclophilin-like protein; cyclophilin-like protein Conserved expressed protein, cyclophilin type. Two alternatively spliced variants are expected g6777.t3,Cre06.g292500.t1.1,CYN23, g6777.t2,CYN23, g6777.t1,CYN23 PF00160 PTHR11071:SF17,PTHR11071 KOG0884 - - GO:0003755,GO:0006457 AT1G26940.1 - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Cre06.g249750 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 4 - - g5594.t1 PF07382 - - - - GO:0003677,GO:0030261 - - - Cre10.g458600 FAP245 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g11249.t1 - - - - - - - - - Cre16.g682013 - 0 5 1.0 1.0 0 5 1.0 1.0 C n upregulated 4 - - g16148.t1,Cre01.g064300.t1.1,Cre01.g064300.t1.2 PF03749 - - - - - - - - Cre16.g686510 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g16831.t2,Cre01.g070650.t1.1,Cre01.g070650.t1.2, g16831.t3,Cre01.g070650.t2.1, g16831.t1,Cre01.g070650.t3.1 - - - - - - - - - Cre08.g370950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8691.t1,Cre08.g370950.t1.1 - - - - - - - - - Cre17.g710000 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 15 - - g17196.t1 PF00069 PTHR23257:SF336,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G24715.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre16.g689647 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g16859.t1 PF02170,PF02171,PF08699 PTHR22891 KOG1041 - K11593 GO:0005515 AT1G48410.2 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase Cre07.g347250 FIP37 - 0 1 1.0 nan 0 1 1.0 nan O n - - Target of FKB12/rapamycin complex Putative homolog of FIP37, required for chromosome maintenance in Arabidopsis and yeast; Target of FKB12/rapamycin complex g8081.t1,FIP37 - PTHR15217 - - - - AT3G54170.1 ATFIP37,FIP37 FKBP12 interacting protein 37 Cre01.g013700 ASC1 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g334.t1,ASC1, g334.t2,Cre01.g013700.t1.1,ASC1 PF01459 PTHR11743:SF24,PTHR11743 KOG3126 - - GO:0005741,GO:0006820,GO:0008308,GO:0044070,GO:0055085 AT5G57490.1 ATVDAC4,VDAC4 voltage dependent anion channel 4 Cre10.g439400 GAT1 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 4 Glutamyl tRNA amidotransferase, subunit A - g10820.t1,GAT1 PF01425 PTHR11895 KOG1211 - - GO:0016884 AT3G25660.1 - Amidase family protein Cre07.g316850 MCM4 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 Minichromosome maintenance protein Homologous to MCM4/CDC21 DNA replication protein g7325.t1,Cre07.g316850.t1.1 PF00493 PTHR11630,PTHR11630:SF45 KOG0478 - K02212 GO:0003677,GO:0005524,GO:0006260 AT2G16440.1 MCM4 Minichromosome maintenance (MCM2/3/5) family protein Cre09.g397475 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9865.t1,Cre02.g134400.t1.1 PF00249 - - - - - - - - Cre13.g607050 TST,THT1,TST1,TSU1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 Thiosulfate sulfurtransferase Thiosulfate sulfurtransferase (Rhodanese, THTR). Participates in the formation of iron-sulfur complexes, cyanide detoxification or modification of sulfur-containing enzymes. Located in the mitochondrial matrix. Previously annotated as TST or TST1, but th g14637.t1,Cre13.g607050.t1.1,THT1,TST,TST1,TSU1 PF00581 PTHR11364 KOG1529 2.8.1.1,2.8.1.2 K01011 - AT1G79230.1 ATMST1,ATRDH1,MST1,ST1,STR1 mercaptopyruvate sulfurtransferase 1 Cre07.g353650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g8227.t1 PF00612 - - - - GO:0005515 - - - Cre08.g358539 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 - - g8355.t1,Cre41.g786950.t1.1 PF09229 PTHR13009 - - - GO:0001671,GO:0005737,GO:0051087 AT3G12050.1 - Aha1 domain-containing protein Cre02.g107000 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g2193.t1 PF00069 PTHR24056,PTHR24056:SF171 KOG0594 - - GO:0004672,GO:0005524,GO:0006468 AT3G48750.1 CDC2,CDC2A,CDC2AAT,CDK2,CDKA1,CDKA;1 cell division control 2 Cre05.g238290 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 6 Dynamin-related GTPase Hypothetical Conserved Protein. Similar to DRP4 (MX-like) class of Dynamin-like GTPases. Previously annotated as DRP4B g5488.t1,Cre56.g791250.t1.1,Cre56.g791250.t1.2 PF01031,PF00350,PF02212 PTHR11566:SF21,PTHR11566 KOG0446 - - GO:0005525,GO:0003924 AT5G42080.3 ADL1,ADL1A,AG68,DL1,DRP1A,RSW9 dynamin-like protein Cre08.g358537 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 10 - - g8353.t1 - - - - - - - - - Cre08.g358532 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 8 - - g8349.t1,Cre28.g777506.t1.1,Cre28.g777506.t1.2 PF00320,PF01426 PTHR10071:SF113,PTHR10071 - - - GO:0003700,GO:0006355,GO:0008270,GO:0043565,GO:0003677 AT4G32890.1 GATA9 GATA transcription factor 9 Cre01.g009765 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - - - - g247.t1,Cre01.g009750.t1.3 - - - - - - - - - Cre07.g336000 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 - - g7821.t1 PF00293 PTHR22769 - - - GO:0016787 AT1G68760.1 ATNUDT1,ATNUDX1,NUDX1 nudix hydrolase 1 Cre11.g478000 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 8 - - g11866.t1 - - - - - - - - - Cre07.g336300 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 9 - - g7827.t1 - - - - - - - - - Cre03.g200879 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g4374.t1,Cre19.g752300.t1.1, g4374.t2,Cre19.g752300.t2.1 PF00685 PTHR10605,PTHR10605:SF3 - - - GO:0008146 - - - Cre09.g396698 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - - - - g9843.t1,Cre02.g133400.t1.1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre06.g305350 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 17 - - g7068.t1 - - - - - - - - - Cre17.g734612 MRP2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 ABC transporter, multidrug resistance associated protein Putative ABC transporter, MRP subfamily, membrane protein PMID: 15710683 g17767.t1,Cre15.g645000.t1.1,MRP2 PF00664,PF00005 PTHR24223,PTHR24223:SF196 KOG0054 - K05665 GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT2G34660.1 ATMRP2,EST4,MRP2 multidrug resistance-associated protein 2 Cre03.g193200 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g3997.t1,Cre03.g193200.t1.1 - - - - - - - - - Cre10.g426900 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 14 - - g10548.t1 PF02458 - - - - GO:0016747 - - - Cre10.g436650 HEL45 - 0 3 1.0 1.0 0 3 1.0 1.0 C Y - 1 - - g10764.t1,HEL45 PF00271,PF00270 PTHR24031,PTHR24031:SF94 KOG0330 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT3G06980.1 - DEA(D/H)-box RNA helicase family protein Cre03.g207901 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g4152.t1,Cre03.g207850.t1.3 - - - - - - - - - Cre01.g047400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g1054.t1 - - - - - - - - - Cre06.g251650 PTC1 - 0 1 1.0 nan 0 1 1.0 nan O n - - Low-affinity phosphate transporter Putative low-affinity phosphate transporter, similar to yeast Pho87, Pho90 & Pho91 transporters involved in activation of the PHO pathway. Contains an N-terminal SPX domain and a C-terminal SLC13 permease domain. g5635.t1,PTC1 PF00939,PF03105 PTHR10283:SF37,PTHR10283 KOG1281 - K14430 GO:0005215,GO:0006814,GO:0016020,GO:0055085 AT5G47560.1 ATSDAT,ATTDT,TDT tonoplast dicarboxylate transporter Cre08.g373369 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g8779.t1,Cre80.g796000.t1.1,Cre80.g796000.t1.2 - - - - - - - - - Cre10.g444850 CAV7 - 0 15 1.0 1.0 0 15 1.0 1.0 O n downregulated 17 Voltage-gated Ca2+ channel, alpha subunit Voltage-dependent 4-domain calcium channel, alpha subunit; may exhibit altered ion selectivity as conserved P-loop loci differ from mammalian Ca2+ channels (PMID: 8968582) g10937.t1,CAV7 PF00520 PTHR10037:SF138,PTHR10037 KOG0956 - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G03560.1 ATCCH1,ATTPC1,FOU2,TPC1 two-pore channel 1 Cre16.g666250 TPT26 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g16078.t1,Cre16.g666250.t1.1,TPT26, g16078.t2,TPT26 PF03151 PTHR11132 KOG1444 - - - AT4G31600.2 - UDP-N-acetylglucosamine (UAA) transporter family Cre07.g345250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8034.t1 - PTHR23151:SF8,PTHR23151 - - - - - - - Cre06.g256150 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g5756.t1,Cre06.g256150.t1.1 - - - - - - - - - Cre02.g074437 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g1323.t1 - - - - - - - - - Cre13.g562800 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g13850.t1 PF00400,PF11715 PTHR22847 KOG0295 - - - AT4G15900.1 PRL1 pleiotropic regulatory locus 1 Cre06.g297450 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n upregulated - - - g6880.t1,Cre06.g297450.t1.1 - - - - - - - - - Cre13.g603225 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - - - - g14566.t1 PF07728 - - - - GO:0005524,GO:0016887 - - - Cre09.g400950 NCT2 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g9248.t1,Cre09.g400950.t1.1,NCT2 PF07690 PTHR24979:SF3,PTHR24979 - - - GO:0016021,GO:0055085 AT2G38060.1 PHT4;2 phosphate transporter 4;2 Cre03.g189950 HOP1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 HSP70-HSP90 organizing protein HOP (or Sti1 in yeast) is a cytosolic protein that mediates the interaction between HSP90 and HSP70 via TPR domains; these bind to the EEVD motifs present in cytosolic HSP90 and HSP70 [PMID: 8423808] g3933.t1,Cre03.g189950.t1.1,HOP1 PF00515 PTHR22904,PTHR22904:SF14 KOG0548 - - GO:0005515 AT4G12400.2 - stress-inducible protein, putative Cre06.g308300 RRM6 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g7137.t1,Cre06.g308300.t1.1,RRM6, g7137.t2,RRM6 PF01728 - - - - GO:0003676,GO:0008168,GO:0032259 - - - Cre09.g394695 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 11 - - g9789.t1,Cre02.g131000.t1.1 - PTHR21574 - - - - - - - Cre07.g332150 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g7728.t1,Cre07.g332150.t1.1 - - - - - - AT3G62810.1 - complex 1 family protein / LVR family protein Cre07.g317950 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 15 - - g7351.t1 - - - - - - - - - Cre05.g248250 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g5167.t1 PF01959 - - - - - AT3G28760.1 - - Cre12.g483550 VPE1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 Vacuolar processing enzyme A vacuole-targeted cysteine protease (clan CD of the C13 family) that has substrate specificity toward Asn and Asp residues (asparaginyl endopeptidase). Cr VPE is most closely related to vegetative-type plant VPEs (maize NP1); plant orthologues are involv g12003.t1,Cre12.g483550.t1.1,VPE1 PF01650 PTHR12000:SF2,PTHR12000 KOG1348 3.4.22.34 K01369 GO:0004197,GO:0006508 AT1G62710.1 BETA-VPE,BETAVPE beta vacuolar processing enzyme Cre04.g224867 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g4911.t1,Cre15.g644650.t1.1 - - - - - - - - - Cre14.g618550 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 12 - - g14900.t1,Cre14.g618550.t1.1 - - - - - - - - - Cre08.g368000 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g8622.t1 PF01753 PTHR13244 - - - GO:0008270 AT1G70150.1 - zinc ion binding Cre10.g420200 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g10398.t2, g10398.t1,Cre10.g420200.t1.1 PF12499 - - - - - - - - Cre12.g560700 CDJ6 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - Chloroplast DnaJ-like protein DnaJ-like protein; probably targeted to chloroplast, as judged from presence of N-ter extension and from homology to Synechococcus elongatus Q8DKR7 and rice Q6K850 (predicted by TargetP to be chloroplast-targeted); contains N-terminal J-domain (pfam00226) g13304.t1 PF00226,PF01556 PTHR24076:SF80,PTHR24076 KOG0715 - - GO:0031072,GO:0006457,GO:0051082 AT2G22360.1 - DNAJ heat shock family protein Cre17.g742150 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 6 - - g17950.t1,Cre17.g742150.t1.1 - - - - - - - - - Cre07.g342700 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 13 - - g7931.t2, g7931.t1 - - KOG1187 - - - AT3G49060.1 - U-box domain-containing protein kinase family protein Cre12.g536850 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 - - g13202.t1 - - - - - - - - - Cre06.g301500 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 9 - - g6976.t1 - - - - - - - - - Cre12.g531800 FAP7 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g13086.t1 - - - - - - - - - Cre16.g675150 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 17 - - g16615.t1 PF00069 PTHR23257:SF300,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre06.g254550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g5726.t1,Cre06.g254550.t1.1 - - - - - - - - - Cre12.g524800 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g12919.t1 - - - - - - - - - Cre14.g609300 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 4 - - g14689.t1,Cre14.g609300.t1.1 - PTHR19288,PTHR19288:SF15 - - - - AT5G10460.1 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre10.g458450 GPX5 - 0 9 1.0 1.0 0 9 1.0 1.0 O n upregulated 17 Glutathione peroxidase GPX5 has also been called GPXH. GPXH gene expression is induced by singlet oxygen [PMID: 16160847; PMID: 15597886; PMID: 15517390; PMID: 11485197; PMID: 19451016; PMID 19690965]. Homologous to glutathione peroxidase from other organisms. Probably cytosoli g11246.t1 PF00255 PTHR11592 KOG1651 1.11.1.9 K00432 GO:0004602,GO:0006979,GO:0055114 AT3G63080.1 ATGPX5,GPX5,MEE42 glutathione peroxidase 5 Cre12.g508750 LHCA2 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Light-harvesting protein of photosystem I - g12378.t1,Cre12.g508750.t1.1 PF00504 PTHR21649 - - - GO:0009765,GO:0016020 AT1G19150.1 LHCA2*1,LHCA6 photosystem I light harvesting complex gene 6 Cre06.g303900 - 0 1 1.0 nan 0 1 1.0 nan O n - 18 - - g7037.t1 PF03006 PTHR20855,PTHR20855:SF14 KOG0748 - - GO:0016021 AT4G37680.1 HHP4 heptahelical protein 4 Cre16.g653300 BLZ19 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 17 - - g15798.t1,Cre16.g653300.t1.1,BLZ19 - - - - - - - - - Cre10.g429200 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 4 - - g10603.t1 PF00856 PTHR13271 - - - GO:0005515 AT1G24610.1 - Rubisco methyltransferase family protein Cre01.g007300 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g190.t1,Cre01.g007300.t1.1 - PTHR15032:SF3,PTHR15032 KOG3798 3.1.4.- K13985 - - - - Cre16.g683000 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 15 - - g16442.t1,Cre16.g683000.t1.1 - - - - - - - - - Cre16.g670652 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g16216.t1 - - - - - - - - - Cre02.g094426 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g1785.t1 - - - - - - - - - Cre02.g141886 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 7 - - g2736.t1,Cre15.g646850.t1.1 PF00069 PTHR26392 - - - GO:0004672,GO:0005524,GO:0006468 AT1G67890.1 - PAS domain-containing protein tyrosine kinase family protein Cre13.g585400 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 - - g14369.t2, g14369.t1 PF00060,PF00497 PTHR25899:SF40,PTHR25899 KOG4817 - K05212,K05313 GO:0004970,GO:0005234,GO:0016020,GO:0005215,GO:0006810,GO:0030288 AT1G05200.1, AT2G29100.1 ATGLR2.9,GLR2.9, ATGLR3.4,GLR3.4,GLUR3 glutamate receptor 3.4, glutamate receptor 2.9 Cre17.g713650 MSH5 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g17280.t1,MSH5 PF00488,PF05192 PTHR11361,PTHR11361:SF20 - - K08741 GO:0005524,GO:0006298,GO:0030983 AT3G20475.1 ATMSH5,MSH5 MUTS-homologue 5 Cre03.g204400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g4227.t1 PF01694 PTHR22790,PTHR22790:SF13 - 3.4.21.- K09651 GO:0004252,GO:0016021 AT3G17611.1 ATRBL14,RBL14 RHOMBOID-like protein 14 Cre03.g184600 RWP7 - 0 1 1.0 nan 0 1 1.0 nan M n - - RWP-RK transcription factor Putative RWP-RK domain transcription factor [PMID: 15785851]. The model is partly based on an unpublished cDNA sequence. g3825.t1,RWP7 PF02042 - - - - - AT4G35590.1 - RWP-RK domain-containing protein Cre17.g739700 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 16 - - g17892.t1 - - - - - - - - - Cre09.g399402 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 9 Cytochrome P450, CYP3 superfamily Cytochrome P450, CYP3 superfamily, CYP3A family. Previously annotated as CYP768A1 g9918.t1,Cre02.g136600.t1.1, g9918.t2,Cre02.g136600.t2.1 PF00067 PTHR24301,PTHR24301:SF127 KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT5G57220.1 CYP81F2 cytochrome P450, family 81, subfamily F, polypeptide 2 Cre02.g100750 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g2055.t1,Cre02.g100750.t1.1 - - - - - - - - - Cre09.g399400 FAP199,TGL15 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 Triacylglycerol lipase Triacylglycerol lipase. This gene model overlaps a bit with FAP199 (Flagellar Associated Protein) from v3 g9287.t2,TGL15, g9287.t1,TGL15 PF01764 PTHR11183,PTHR11183:SF13 - - - GO:0004806,GO:0006629 - - - Cre10.g463900 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 9 - - g11367.t1, g11367.t2, g11367.t3 - - - - - - - - - Cre12.g522750 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - - - - g12874.t1 PF05686 PTHR12203,PTHR12203:SF14 - - - - - - - Cre12.g544550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g13671.t1 PF00069 PTHR24349,PTHR24349:SF129 - - - GO:0004672,GO:0005524,GO:0006468 AT3G08720.1 ATPK19,ATPK2,ATS6K2,S6K2 serine/threonine protein kinase 2 Cre12.g545602 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g13796.t1 - - - - - - - - - Cre12.g545600 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g13647.t2, g13647.t1 PF00097 - - - - - AT2G30580.1 DRIP2 DREB2A-interacting protein 2 Cre06.g282150 CNX1G,CNX1C - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Molybdopterin biosynthesis protein Homolog to E-domain of molybdopterin biosynthesis CNX1 protein (Involved in molybdenum cofactor biosynthesis. May play a role in molybdenum transfer to molybdopterin); homologous to Arabidopsis thaliana Cnx1G. Previously annotated as CNX1C g6562.t1,CNX1C,CNX1G PF00994 PTHR10192 - - - GO:0006777 AT5G20990.1 B73,CHL6,CNX,CNX1,SIR4 molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) Cre07.g340700 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 3 - - g7923.t1, g7923.t2 PF03083 PTHR10791,PTHR10791:SF18 KOG1623 - - GO:0016021 AT4G10850.1 - Nodulin MtN3 family protein Cre12.g514100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g12690.t1 PF00069 PTHR23139,PTHR23139:SF22 - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre17.g740550 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g17913.t1 PF05686 PTHR12203,PTHR12203:SF14 - - - - - - - Cre12.g486252 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12271.t1 - - - - - - - - - Cre01.g036150 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g813.t1,Cre01.g036150.t1.1 - - - - - - AT5G44090.1 - Calcium-binding EF-hand family protein Cre02.g141200 NIC2 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g2666.t1,Cre02.g141200.t1.1,NIC2 PF01729,PF02749 PTHR11948 KOG3008 2.4.2.19 K00767 GO:0004514,GO:0009435,GO:0016763 AT2G01350.1 QPT quinolinate phoshoribosyltransferase Cre12.g502450 ELG8 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n downregulated 8 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g12522.t1,ELG8 PF03016 PTHR11062,PTHR11062:SF12 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre13.g568950 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g14000.t1 PF01725 PTHR11067 KOG3222 - - GO:0016787 AT4G13720.1 - Inosine triphosphate pyrophosphatase family protein Cre16.g678400 - 0 1 1.0 nan 0 1 1.0 nan M n - 1 - - g16546.t1 PF00400 PTHR22847:SF207,PTHR22847 - - - - AT5G45760.1 - Transducin/WD40 repeat-like superfamily protein Cre05.g235950 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5424.t1,Cre05.g235950.t1.1 - - - - - - - - - Cre17.g730700 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 10 - - g17658.t1 PF00248 PTHR11732:SF2,PTHR11732 KOG1575 - - GO:0016491,GO:0055114 - - - Cre06.g309826 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7169.t1 - - - - - - - - - Cre08.g363800 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8520.t1 - - - - - - - - - Cre03.g162950 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g3340.t1,Cre03.g162950.t1.1 - - - - - - - - - Cre05.g230700 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g5154.t1,Cre05.g230700.t1.1 - - - - - - - - - Cre12.g490650 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 - - g12172.t1,Cre12.g490650.t1.1 - - - - - - AT5G16620.1 ATTIC40,PDE120,TIC40 hydroxyproline-rich glycoprotein family protein Cre02.g104050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g2128.t1,Cre02.g104050.t1.1 - - - - - - - - - Cre03.g143967 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 11 - - g2862.t1,Cre01.g056250.t1.1,Cre01.g056250.t1.2 - - - - - - - - - Cre16.g666000 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 7 - - g16073.t1 - PTHR13403,PTHR13403:SF9 - - K13151 - AT4G24880.1 - - Cre03.g174250 FAP111 - 0 7 1.0 1.0 0 7 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]. Looks like U2 small nuclear ribonucleoprotein A g3595.t1,Cre03.g174250.t1.1 PF00560 PTHR10552 - - - GO:0005515 AT1G09760.1 U2A\' U2 small nuclear ribonucleoprotein A Cre16.g682552 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g16452.t1 PF00211 PTHR11920:SF127,PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre12.g517451 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 9 - - g12760.t1,Cre12.g517450.t1.3 PF00656 - KOG1546 - - GO:0004197,GO:0006508 AT4G25110.1 AtMC2,MC2 metacaspase 2 Cre06.g283200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g6586.t1,Cre06.g283200.t1.1 PF00856 PTHR13271 - - - GO:0005515 AT3G55080.2 - SET domain-containing protein Cre12.g550468 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g13538.t2, g13538.t1,Cre12.g550468.t1.1 - - - - - - - - - Cre16.g672385 HIS5 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 Histidinol phosphate aminotransferase Histidinol-phosphate aminotransferase (EC 2.6.1.9); predicted plastid targeting by Target-P g16702.t1,Cre01.g065150.t1.1,Cre01.g065150.t1.2,HIS5 PF00155 PTHR11751,PTHR11751:SF3 KOG0633 2.6.1.9 K00817 GO:0009058,GO:0016769,GO:0030170 AT5G10330.1 ATHPA1,EMB2196,HISN6A,HPA1 histidinol phosphate aminotransferase 1 Cre06.g292249 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - - - - g6771.t1 PF12499 - KOG2992 - - - - - - Cre03.g190250 SUB6 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g3939.t1,Cre03.g190250.t1.1,SUB6 PF00082 PTHR10795,PTHR10795:SF75 - - - GO:0004252,GO:0006508 - - - Cre06.g305500 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g7071.t2,Cre06.g305500.t1.1, g7071.t1 PF00857 PTHR11080,PTHR11080:SF19 - - - GO:0003824,GO:0008152 AT5G23230.1, AT5G23220.1 NIC2, NIC3 nicotinamidase 2, nicotinamidase 3 Cre16.g647500 NRX4 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 7 Nucleoredoxin Related to animal thioredoxin, nucleoredoxin g15674.t2,NRX4, g15674.t1,NRX4 PF05193 - - - - GO:0004222,GO:0006508,GO:0008270 AT5G56730.1 - Insulinase (Peptidase family M16) protein Cre04.g222850 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 5 - - g4862.t1,Cre04.g222850.t1.1 - - - - - - - - - Cre03.g182600 CPL1 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 10 Predicted protein Conserved expressed protein g3785.t1 PF08642 - - - - - AT5G08450.1 - - Cre12.g549600 - 1 32 1.0 1.0 1 32 1.0 1.0 O n - 9 - - g13556.t1 - - - - - - - - - Cre17.g726650 CGL96 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 1 - - g17570.t1,Cre17.g726650.t1.1 PF09420 - KOG4771 - - - AT1G02870.1 - - Cre14.g621351 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 17 - - g14974.t1,Cre14.g621350.t1.3 PF04607 PTHR21262 - - - GO:0015969 AT4G02260.1 AT-RSH1,ATRSH1,RSH1 RELA/SPOT homolog 1 Cre12.g484250 DHC1,PF9,ROC34,IDA1 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 13 Flagellar inner arm dynein 1 heavy chain alpha (I1/f alpha) Flagellar inner arm dynein 1 heavy chain alpha (dynein heavy chain 1, dynein fa; one heavy chain of a two-headed type dynein; other chain is DHC10, dynein fb) (subspecies f)(DHC1-alpha)(Pf9); DHC1 in PMID: 9247642. Identified in Chlamydomonas flagella in g12019.t1,IDA1,PF9,ROC34 PF08385,PF08393,PF07728,PF03028 PTHR10676,PTHR10676:SF135 KOG3595 - - GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 - - - Cre04.g223100 CAH1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 6 Carbonic anhydrase Carbonate dehydratase 1 in Chlamydomonas reinhardtii, also known as CA1; gi:115447; Carbonic anhydrase 1 precursor (Carbonate dehydratase 1) (CA1); alpha type - Carbonic anhydrase 1 localized in the periplasmic space and low-CO2 inducible gene regulated b g4867.t1,Cre04.g223100.t1.1,CAH1 PF00194 PTHR18952,PTHR18952:SF2 KOG0382 4.2.1.1 K01672 - AT4G20990.1 ACA4,ATACA4 alpha carbonic anhydrase 4 Cre01.g047650 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g1059.t1,Cre01.g047650.t1.1 - PTHR23125 - - - - AT4G15475.1 - F-box/RNI-like superfamily protein Cre06.g271550 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g6094.t1,Cre06.g271550.t1.1 PF01429 - - - - GO:0003677,GO:0005634 - - - Cre09.g401800 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 16 - - g9228.t1 PF00069 PTHR23257,PTHR23257:SF99 - - - GO:0004672,GO:0005524,GO:0006468 AT1G51850.1 - Leucine-rich repeat protein kinase family protein Cre05.g233650 FXL9 - 0 12 1.0 1.0 0 12 1.0 1.0 O n downregulated 15 FixL-like PAS domain protein FixL like homolog 9 (FXL). PAS region shows high identity to Rhizobial FixL proteins. g5100.t1,FXL9 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre05.g238600 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 12 - - g5501.t1,Cre05.g238600.t1.1 PF12499 - - - - - - - - Cre12.g521050 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g12837.t1,Cre12.g521050.t1.1 - - - - - - - - - Cre02.g095350 CGL116,DNK1 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g1936.t1,DNK1 PF01712 PTHR10513 KOG4235 - - GO:0005524,GO:0006139,GO:0016773 AT1G72040.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre10.g436350 SHK5,SHKF1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 3 Shikimate kinase Possible shikimate kinase (EC 2.7.1.71); based on similarity to rice shikimate kinase (GenBank BAD83413); predicted plastid location by Target-P and by homology. Catalyzes the fifth step of the shikimate pathway (PMID: 12242393; PMID: 16963634). Previou g10758.t1,SHK5,SHKF1 PF01202 PTHR21087 KOG3347 2.7.1.71 K00891 GO:0004765,GO:0005524 AT2G21940.4 ATSK1,SK1 shikimate kinase 1 Cre12.g492650 FAS2 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated 2 Fasciclin-like protein Similar to periostin/fasciclin/TGFbeta-induced protein; contains 4 FAS1 (BIgH3) domains, involved in cell recognition; probably extracellular, GPI-anchored (by homology) g12097.t1,Cre12.g492650.t1.1,FAS2 PF02469 PTHR10900:SF53,PTHR10900 - - - - - - - Cre17.g709800 RLS1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 RegA/RlsA-like protein Closest homolog to the Volvox carteri RegA and RlsA genes; contains a SAND domain; RegA is a transcriptional repressor, responsible for maintenance of terminal differentiation in somatic cells (PMID: 16622701) g17191.t1,Cre17.g709800.t1.1,RLS1 PF01342 - - - - GO:0003677,GO:0005634 - - - Cre07.g329277 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g7659.t1,Cre07.g329277.t1.1 - - - - - - - - - Cre13.g571700 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g14059.t1 PF00069,PF00036 PTHR24349 KOG0032 2.7.11.1 K13412 GO:0004672,GO:0005524,GO:0006468 AT3G10660.1 ATCPK2,CPK2 calmodulin-domain protein kinase cdpk isoform 2 Cre08.g380300 MSRA3 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated - Peptide methionine sulfoxide reductase - g8951.t1 PF01625 PTHR10173:SF6,PTHR10173 KOG1635 - - GO:0016671,GO:0019538,GO:0055114 AT4G25130.1 PMSR4 peptide met sulfoxide reductase 4 Cre07.g319050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g7376.t1,Cre07.g319050.t1.1 - - - - - - - - - Cre06.g274450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g6155.t1 PF00856 PTHR13271,PTHR13271:SF7 - - - GO:0005515 - - - Cre01.g009400 NSS2 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - - - - g237.t1,Cre01.g009400.t1.1,NSS2 PF00474 PTHR11819,PTHR11819:SF4 - - K14387 GO:0005215,GO:0006810,GO:0016020,GO:0055085 - - - Cre12.g498300 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 15 - - g12619.t1,Cre12.g498300.t1.1 - - - - - - - - - Cre06.g263050 EFP2 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 7 Mitochondrial elongation factor P Putative mitochondrial elongation factor P (EF-P) g5909.t1,Cre06.g263050.t1.1 PF01132,PF09285,PF08207 - - - - GO:0003746,GO:0006414,GO:0005737,GO:0043043 AT4G26310.1 - elongation factor P (EF-P) family protein Cre16.g653150 CPR3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g15794.t2,CPR3, g15794.t1,Cre16.g653150.t1.1,CPR3 PF01841 - - - - - - - - Cre01.g038000 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 9 - - g851.t1 PF05773,PF03129,PF00069 PTHR11042,PTHR11042:SF9 KOG1936 2.7.11.1 K08282 GO:0005515,GO:0004812,GO:0005524,GO:0006412,GO:0004672,GO:0006468 AT3G59410.1 GCN2 protein kinase family protein Cre01.g054900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 5 - - g1211.t1,Cre01.g054900.t1.1 - - - - - - - - - Cre03.g183550 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 11 - - g3804.t1 PF02577 - - - - - - - - Cre14.g620400 SPC22 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 Signal Peptidase, 22 kDa subunit Expressed Protein. Similar to the 22 kDa subunit of the ER signal peptidase. Involved in processing signal peptides from ER-targeting proteins g14952.t1,Cre14.g620400.t1.1,SPC22 PF04573 PTHR12804 KOG3372 3.4.-.- K12948 GO:0005787,GO:0006465,GO:0008233,GO:0016021 AT3G05230.1 - Signal peptidase subunit Cre10.g417900 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10349.t1,Cre10.g417900.t1.1 - - - - - - - - - Cre08.g361984 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 7 - - g8475.t1,Cre08.g361984.t1.1 - - - - - - - - - Cre04.g224450 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 17 - - g4896.t1 PF00069,PF07714 PTHR26392 KOG3227 - - GO:0004672,GO:0005524,GO:0006468 AT5G03730.1 AtCTR1,CTR1,SIS1 Protein kinase superfamily protein Cre07.g329850 KCN5 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 Voltage-gated K+ channel, alpha subunit Voltage-dependent 1-domain potassium channel (Shaker-like), alpha subunit; P-loop contains conserved motif for K+ selectivity, cyclic nucleotide binding domain at C-terminus g7675.t1,KCN5 PF00069 PTHR24343,PTHR24343:SF58 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT5G63650.1 SNRK2-5,SNRK2.5,SRK2H SNF1-related protein kinase 2.5 Cre13.g604800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g14589.t1,Cre13.g604800.t1.1 - - - - - - - - - Cre17.g739950 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g17897.t1 PF01612 PTHR13620 - - - GO:0003676,GO:0005622,GO:0006139,GO:0008408 AT5G35970.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre17.g746847 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g18053.t1,Cre20.g758351.t1.1,Cre20.g758351.t1.2 - - - - - - - - - Cre07.g335650 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g7814.t1 PF00560 PTHR24420:SF937,PTHR24420 - - - GO:0005515 AT3G56370.1 - Leucine-rich repeat protein kinase family protein Cre02.g095053 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g1827.t2,Cre11.g470500.t2.1, g1827.t1,Cre11.g470500.t1.1 PF00069 - - - - GO:0004672,GO:0005524,GO:0006468 AT3G27560.1 ATN1 Protein kinase superfamily protein Cre04.g231908 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g5057.t1,Cre32.g781364.t1.1,Cre32.g781364.t1.2 - - - - - - - - - Cre14.g629600 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g15163.t1 PF06803 - - - - - - - - Cre09.g388504 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g9615.t1,Cre02.g123250.t1.1 - - - - - - - - - Cre13.g578201 RRM13 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g14208.t1,RRM13 - - - 2.1.1.- K00599 - AT3G27180.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre16.g678650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g16541.t1,Cre16.g678650.t1.1 - - - - - - - - - Cre02.g091300 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g1709.t1 - - - - - - - - - Cre01.g039350 NCR2 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 5 Cytochrome P450 reductase, possibly CYP505 family Cytochrome P450 reductase, possibly CYP505B family. In the cytochrome P450 CYP102 family. Previously annotated as NCR2 for NADPH-cytochrome P450 reductase (NADPH-ferrihemoprotein reductase). This is probably alternatively spliced g879.t1,Cre01.g039350.t1.1,NCR2 PF00667,PF00175,PF00258 PTHR19384,PTHR19384:SF17 KOG1158 1.6.2.4 K00327 GO:0016491,GO:0055114,GO:0010181 AT4G24520.1 AR1,ATR1 P450 reductase 1 Cre02.g104876 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g2147.t1 - - - - - - - - - Cre13.g575701 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g14149.t1,Cre13.g575700.t1.3 - - - - - - AT3G03341.1 - - Cre10.g462650 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 14 - - g11340.t1,Cre10.g462650.t1.1 - - - - - - - - - Cre09.g389450 - 0 4 1.0 1.0 0 4 1.0 1.0 M n upregulated 4 - - g9509.t1,Cre09.g389450.t1.1 PF00076,PF04564 PTHR22849 - - - GO:0003676,GO:0000151,GO:0004842,GO:0016567 AT5G61550.2 - U-box domain-containing protein kinase family protein Cre12.g507250 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 - - g12417.t1 PF00773 PTHR23355,PTHR23355:SF13 KOG2102 - - GO:0003723,GO:0004540 AT2G17510.1 EMB2763 ribonuclease II family protein Cre15.g635150 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g15318.t1 - - KOG4462 - - - - - - Cre16.g690950 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g15666.t1,Cre16.g690950.t1.1 - - - - - - - - - Cre16.g693750 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 8 - - g15603.t1 PF00400 PTHR10253,PTHR10253:SF2 KOG1034 - K11462 - AT3G20740.1 FIE,FIE1,FIS3 Transducin/WD40 repeat-like superfamily protein Cre04.g217350 KUP4 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Potassium ion uptake transporter Potassium ion uptake transporter, distantly linked to KUP5 gene encoding a similar protein g4525.t1,Cre04.g217350.t1.1,KUP4 PF02705 - - - - GO:0015079,GO:0016020,GO:0071805 AT4G13420.1 ATHAK5,HAK5 high affinity K+ transporter 5 Cre09.g390450 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g9485.t1,Cre09.g390450.t1.1 - - - - - - - - - Cre04.g227900 PF20 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 WD-repeat protein of flagellum central pair WD-repeat containing protein PF20 of the central pair of the flagella. Associates with the intermicrotubule bridge. Smith and Lefebvre, 1997 [PMID: 9188098] g4987.t1,Cre04.g227900.t1.1,PF20 PF00400 PTHR14604 KOG0288 - - - AT2G41500.1 EMB2776,LIS WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related Cre12.g541300 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g13748.t1,Cre12.g541300.t1.1 PF00004 PTHR23074,PTHR23074:SF31 - - - GO:0005524 AT1G80350.1 AAA1,ATKTN1,BOT1,ERH3,FRA2,FRC2,FTR,KTN1,LUE1 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre01.g023400 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g540.t1 PF04791 - - - K14617 - AT5G01460.1 - LMBR1-like membrane protein Cre06.g308750 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g7146.t1,Cre06.g308750.t1.1 PF03006 PTHR20855,PTHR20855:SF19 KOG0748 - - GO:0016021 - - - Cre06.g299926 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g6937.t1 - - - - - - - - - Cre03.g150700 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g3065.t1 PF07719,PF01753 PTHR22904,PTHR22904:SF65 KOG4214 - - GO:0008270 AT1G12270.1 - stress-inducible protein, putative Cre06.g296150 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 16 - - g6850.t1,Cre06.g296150.t1.1 PF05970 PTHR23274 KOG0987 - - - - - - Cre09.g396850 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g9349.t1,Cre09.g396850.t1.1 PF01894 - KOG3267 - - - AT1G21065.1 - - Cre09.g398697 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g9899.t1 - - - - - - - - - Cre17.g738700 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g17867.t1,Cre17.g738700.t1.1 - - - - - - - - - Cre12.g559000 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - - - - g13347.t1, g13347.t2 - - - - - - - - - Cre14.g626800 OPR64 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 4 - - g15096.t1 - - - - - - - - - Cre01.g016800 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g401.t1 PF04564 PTHR19851,PTHR19851:SF5 - - - GO:0000151,GO:0004842,GO:0016567 AT5G01830.1 - ARM repeat superfamily protein Cre10.g435450 CPL2 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y upregulated 8 Transcription factor-like protein Conserved, expressed, transcription factor like protein g10739.t1,Cre10.g435450.t1.1 PF00320 PTHR10071 - - - GO:0003700,GO:0006355,GO:0008270,GO:0043565 AT3G54810.1 BME3,BME3-ZF,GATA8 Plant-specific GATA-type zinc finger transcription factor family protein Cre07.g331450 NAT19 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated - - - g7711.t1,NAT19 - - - - - - - - - Cre14.g616000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g14841.t1 PF00581 - KOG1530 - - - - - - Cre15.g638750 CLR3,RAP17,CLR20,OPR83 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 RAP-domain containing protein RAP-domain containing protein. The RNA-binding RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Previously annotated as CLR3 and CLR20, though the mappi g15436.t1,Cre15.g638750.t1.1,CLR20,CLR3,RAP17 PF08373 - - - - - - - - Cre01.g001150 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 16 - - g26.t1 - - KOG2652 - - - - - - Cre13.g581050 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g14272.t1, g14272.t2 PF05686 PTHR12203 - - - - - - - Cre17.g702351 HLM26 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 17 - - g17027.t1,Cre17.g702350.t1.3,HLM26 PF00856 PTHR22884,PTHR22884:SF73 - - - GO:0005515 AT5G53430.1 ATX5,SDG29,SET29 SET domain group 29 Cre16.g663200 FAP295 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Flagellar Associated Protein, cyclic nucleotide dependent protein kinase Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g16011.t1 PF00069,PF00027 PTHR24351:SF124,PTHR24351 KOG0614 2.7.11.12 K07376 GO:0004672,GO:0005524,GO:0006468 AT2G20050.2 - protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases Cre12.g548350 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 - - g13584.t1,Cre12.g548350.t1.1 - - - - - - - - - Cre09.g397105 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 7 - - g9855.t1,Cre02.g133915.t1.1,Cre02.g133915.t1.2 PF00067 PTHR24301,PTHR24301:SF127 KOG0158 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT2G26170.1 CYP711A1,MAX1 cytochrome P450, family 711, subfamily A, polypeptide 1 Cre09.g397100 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g9340.t1,Cre09.g397100.t1.1 - - - - - - - - - Cre02.g077451 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g1396.t1,Cre02.g077450.t1.3 PF00561 PTHR10992,PTHR10992:SF228 KOG4178 - - - AT5G53050.2 - alpha/beta-Hydrolases superfamily protein Cre02.g099050 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 14 - - g2014.t1 PF00530 PTHR19331,PTHR19331:SF369 - - - GO:0005044,GO:0016020 - - - Cre01.g022750 FAP159 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 Flagellar Associated Protein Flagellar Associated Protein with leucine-rich repeats, found in the flagellar proteome [PMID: 15998802] g526.t1 - - - - - - - - - Cre02.g099055 - 0 13 1.0 1.0 0 13 1.0 1.0 SP n - 10 - - g2015.t1,Cre02.g099055.t1.1 - - KOG0487 - - - - - - Cre12.g546400 DLR2,DLC7b,DLC7B - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 Flagellar inner arm I1/f axonemal dynein, LC7b Flagellar inner arm I1/f axonemal dynein, LC7b. Roadblock homolog. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. LC7b interacts with IC138, DC2, LC3. Previously g13627.t1,Cre12.g546400.t1.1,DLC7b,DLC7B PF03259 PTHR10779 KOG4115 - - - - - - Cre02.g073750 KIN9-2,KLP1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 12 Kinesin motor protein, kinesin-9 (Kif9) family Kinesin motor protein, kinesin-9 (Kif9) family. Associated with one of the central pair microtubules of the flagellar axoneme. Previously annotated as KLP1 for kinesin-like protein 1 to match genetic marker locus. g1306.t1,Cre02.g073750.t1.1,KIN9-2,KLP1 PF00225 PTHR24115,PTHR24115:SF333 KOG4280 - K10397 GO:0003777,GO:0005524,GO:0007018 AT1G59540.1 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre02.g076500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g1374.t1,Cre02.g076500.t1.1 - - - - - - - - - Cre07.g353100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 15 - - g8212.t1 - PTHR10229 - - - - - - - Cre03.g156700 FAP185 - 0 6 1.0 1.0 0 6 1.0 1.0 M n downregulated 15 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]. Possible kinesin g3199.t1 PF00515 PTHR19959:SF90,PTHR19959 - - - GO:0005515 AT1G01320.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre09.g403150 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g9199.t1 PF04720 - - - - - AT3G07350.1 - Protein of unknown function (DUF506) Cre09.g413566 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g10245.t1 - PTHR13078,PTHR13078:SF14 - - - - - - - Cre17.g720300 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - - - g17434.t1,Cre17.g720300.t1.1 PF00560 PTHR24420,PTHR24420:SF519 - - - GO:0005515 AT3G24240.1 - Leucine-rich repeat receptor-like protein kinase family protein Cre13.g566650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 6 - - g13944.t2,Cre13.g566650.t1.1, g13944.t1 PF00501 PTHR24096 KOG1256 6.2.1.3 K01897 GO:0003824,GO:0008152 AT4G11030.1 - AMP-dependent synthetase and ligase family protein Cre12.g515301 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - - - - g12713.t1 - - - - - - - - - Cre04.g216550 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g4503.t1,Cre04.g216550.t1.1 - - - - - - - - - Cre02.g141946 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g2739.t1, g2739.t2, g2739.t3 PF07714 PTHR23257,PTHR23257:SF99 KOG0595 - - GO:0004672,GO:0006468 AT1G67890.1, AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre12.g555550 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 - - g13421.t1,Cre12.g555550.t1.1 PF00626 PTHR11977 KOG0443 - K05761 GO:0003779 AT3G57410.1 ATVLN3,VLN3 villin 3 Cre03.g205750 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 11 - - g4196.t1 PF07986 PTHR15440 - - - - AT4G39920.1 POR,TFC C C-CAP/cofactor C-like domain-containing protein Cre10.g463350 HRP3 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 17 Hydroxyproline-rich glycoprotein Extracellular matrix protein (cell wall protein); contains (hydroxy)proline-rich (HR) domain with (SP)n repeats g11354.t1,Cre10.g463350.t1.1,HRP3 - - - - - - - - - Cre03.g154700 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 - - g3152.t1 PF01937 PTHR12260 KOG3870 - - - - - - Cre17.g732450 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g17700.t1 - - - - - - - - - Cre10.g463355 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g11355.t1,Cre10.g463355.t1.1 - - - - - - - - - Cre12.g553250 PFK2 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 Phosphofructokinase Phosphofructokinase family protein (EC 2.7.1.11 or 2.7.1.90), probably plastid targeted g13472.t1,Cre12.g553250.t1.1 PF00365 PTHR13697 - 2.7.1.11 K00850 GO:0003872,GO:0005945,GO:0006096 AT2G22480.1 PFK5 phosphofructokinase 5 Cre11.g469800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g11790.t1,Cre11.g469800.t1.1 PF07173 - - - - - AT4G37900.1 - Protein of unknown function (duplicated DUF1399) Cre07.g339633 DNJ20 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 14 - - g7900.t1,Cre07.g339650.t1.3, g7900.t2,Cre07.g339650.t2.1 PF00226,PF01556 PTHR24078 KOG4462 - - GO:0031072,GO:0006457,GO:0051082 AT5G25530.1 - DNAJ heat shock family protein Cre13.g564650 MRS5 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 Magnesium and cobalt transport protein Mg2+ transporter protein, CorA-like; related to bacterial homologs g13891.t1,MRS5 PF01544 PTHR21535:SF1,PTHR21535 - - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 - - - Cre16.g694200 MMP15 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 9 Matrix-metalloproteinase-like protein Gametolysin-like metalloprotease with peptidase M11 domain g15588.t1,MMP15 PF05548 - - - - - - - - Cre14.g617350 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 16 - - g14875.t1 PF00415 PTHR22870 - - - - AT5G63860.1 UVR8 Regulator of chromosome condensation (RCC1) family protein Cre06.g305250 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g7065.t1 PF03372 PTHR15822,PTHR15822:SF3 KOG2756 - - - AT1G11800.1 - endonuclease/exonuclease/phosphatase family protein Cre04.g224667 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4903.t1 - - - - - - - - - Cre12.g557950 DNJ27 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - DnaJ-like protein DnaJ-like protein, presumably cytosolic since homolog in Arabidopsis (Q9C580) is weakly predicted by TargetP to be cytosolic; contains N-terminal J-domain (pfam00226) g13371.t1,Cre12.g557950.t1.1 PF00226 PTHR15606 KOG1150 - K09528 GO:0031072 AT5G22080.1 - Chaperone DnaJ-domain superfamily protein Cre10.g444950 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g10939.t1,Cre10.g444950.t1.1 - - - - - - - - - Cre01.g000200 - 0 8 1.0 1.0 0 8 1.0 1.0 M n upregulated - - - g7.t1 - - - - - - - - - Cre10.g441350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g10861.t2, g10861.t1 - - - - - - - - - Cre13.g579700 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g14242.t1,Cre13.g579700.t1.1 - - - - - - - - - Cre10.g436100 MLK1 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 15 Mixed lineage protein kinase Mixed lineage protein kinase with a GAF domain, which is a domain present in phytochrome and CGMP-specific phosphodiesterases. A serine/threonine protein kinase which has a GAF domain, a potential chromophore binding domain. g10753.t2,MLK1, g10753.t1,MLK1 PF01590,PF00069,PF07714 PTHR23257 KOG0192 - - GO:0005515,GO:0004672,GO:0005524,GO:0006468 AT1G67890.1 - PAS domain-containing protein tyrosine kinase family protein Cre17.g729500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g17631.t1,Cre17.g729500.t1.1 - PTHR22870:SF98,PTHR22870 - - - - AT5G63860.1 UVR8 Regulator of chromosome condensation (RCC1) family protein Cre13.g574551 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g14123.t1 - - - - - - - - - Cre13.g569550 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 16 - - g14014.t1 PF08016 PTHR11795,PTHR11795:SF103 - - - - AT4G20140.1 GSO1 Leucine-rich repeat transmembrane protein kinase Cre17.g713025 DNJ33 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 17 - - g17265.t1,Cre17.g713050.t2.1,DNJ33, g17265.t2,Cre17.g713050.t1.3,DNJ33 PF00069 PTHR23257:SF310,PTHR23257 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre16.g661200 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated - - - g15967.t1,Cre16.g661200.t1.1 PF01152 - - - - GO:0015671,GO:0019825 - - - Cre01.g042100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g944.t1,Cre01.g042100.t1.1 - - KOG3671 - - - - - - Cre14.g612200 CYG16 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 9 Adenylate/guanylate cyclase Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g14753.t2, g14753.t1 PF00211,PF00520 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556,GO:0005216,GO:0006811,GO:0016020,GO:0055085 - - - Cre15.g636176 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 9 - - g15347.t1 - - KOG2652 - - - - - - Cre08.g366579 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 15 - - g8589.t1,Cre08.g366579.t1.1 - - - - - - - - - Cre12.g558700 FAP67 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 Flagellar Associated Protein, nucleoside diphosphate kinase-like Flagellar Associated Protein similar to nucleoside diphosphate kinase, found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG5 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400] g13354.t1,Cre12.g558700.t1.1 PF00334 PTHR11349 KOG0888 2.7.4.6 K00940 GO:0004550,GO:0005524,GO:0006165,GO:0006183,GO:0006228,GO:0006241 AT1G17410.1 - Nucleoside diphosphate kinase family protein Cre13.g565301 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g13911.t1, g13911.t3, g13911.t2 - - - - - - - - - Cre24.g755897 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g18266.t1,Cre05.g231750.t1.1 - - - - - - - - - Cre07.g319550 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g7391.t1 PF08495,PF10442 - - - - - - - - Cre10.g462400 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g11335.t1 - - - - - - - - - Cre13.g570700 CHI7 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 14 - - g14037.t1,CHI7 PF00187,PF00704 PTHR11177 KOG2806 3.2.1.14 K01183 GO:0008061,GO:0004553,GO:0005975 AT4G19810.1 - Glycosyl hydrolase family protein with chitinase insertion domain Cre03.g186250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g3859.t1 PF00144 PTHR22935,PTHR22935:SF19 - - - - AT5G24810.1 - ABC1 family protein Cre05.g241648 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g5344.t1 - - - - - - - - - Cre12.g534945 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 14 - - g13158.t1 - - - - - - - - - Cre04.g220100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g4801.t1 PF01753 - - - - GO:0008270 - - - Cre05.g241640 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 - - g5335.t2,Cre24.g770250.t2.1, g5335.t1,Cre24.g770250.t1.1 - - - - - - - - - Cre05.g241647 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5343.t1 - - - - - - - - - Cre11.g467786 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 - - g11716.t1,Cre22.g762626.t1.1,Cre22.g762626.t1.2 PF00067 - - - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 - - - Cre11.g467784 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated - - - g11714.t1,Cre22.g762700.t1.1,Cre22.g762700.t1.2 PF04832 PTHR11220,PTHR11220:SF1 - - - - AT5G20140.1 - SOUL heme-binding family protein Cre11.g467785 - 0 9 1.0 1.0 0 9 1.0 1.0 O n upregulated 14 - - g11715.t1,Cre22.g762650.t1.1 PF00850 PTHR10625,PTHR10625:SF22 KOG1344 3.5.1.98 K11407 - AT5G61060.1 ATHDA5,HDA05,HDA5 histone deacetylase 5 Cre11.g467782 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g11712.t1,Cre22.g762800.t1.1 PF01753 - - - - GO:0008270 - - - Cre11.g467781 FAP151 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 2 ABC transporter-like and Flagellar Associated Protein ABC transporter-like and Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. Previously annotated as FAP151 g11711.t1,Cre22.g762850.t1.1,Cre22.g762850.t1.2 PF00005 PTHR19211 KOG0927 - K06185 GO:0005524,GO:0016887 AT5G60790.1 ATGCN1,GCN1 ABC transporter family protein Cre12.g525500 GCP2 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 Gamma tubulin interacting protein Gamma tubulin ring complex protein 2; SPC97/DGRIP84 Identified by similarity to other homologs g12932.t1,GCP2 PF04130 PTHR19302,PTHR19302:SF13 KOG2001 - - GO:0000226,GO:0000922,GO:0005815 AT5G17410.1 - Spc97 / Spc98 family of spindle pole body (SBP) component Cre11.g467789 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g11719.t1,Cre22.g762550.t1.1,Cre22.g762550.t1.2, g11719.t2,Cre22.g762550.t2.1 - - - - - - - - - Cre10.g467150 ROC69 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g11447.t1,ROC69 - - - - - - - - - Cre08.g378700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g8914.t1,Cre08.g378700.t1.1 - - - - - - - - - Cre16.g660150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g15946.t1,Cre16.g660150.t1.1 PF00338 PTHR11700 KOG0900 - K02969 GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT3G47370.1 - Ribosomal protein S10p/S20e family protein Cre01.g016001 - 0 1 1.0 nan 0 1 1.0 nan M n - 9 - - g381.t1,Cre01.g016000.t1.2 - - - - - - - - - Cre13.g591900 PLD6 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g14512.t1,Cre13.g591900.t1.1 - PTHR21248 - - - - - - - Cre16.g679900 XRN3 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 5\' to 3\' exoribonuclease Putative homologue of yeast 5\'-3\' exoribonucleases Xrn1p(cytoplasmic) and Rat1p (nuclear). g16512.t1,Cre16.g679900.t1.1,XRN3 PF03159 PTHR12341 KOG3544 3.1.13.- K12619 GO:0003676,GO:0004527,GO:0005622 AT1G75660.1 AtXRN3,XRN3 5\'-3\' exoribonuclease 3 Cre17.g715250 BCC1 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Acetyl-CoA biotin carboxyl carrier Biotin-containing subunit of the chloroplastic acetyl-coenzyme A carboxylase; N-terminal sequence identified by Edman degradation is AAKT.... g17315.t1,Cre17.g715250.t1.1,BCC1 PF00364 PTHR23151:SF28,PTHR23151 - - K02160 - AT5G15530.1 BCCP2,CAC1-B biotin carboxyl carrier protein 2 Cre14.g621600 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g14979.t1,Cre14.g621600.t1.1 - - - - - - AT2G32980.1 - - Cre09.g399050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g9295.t1 PF00657 PTHR14209 KOG3035 - - GO:0006629,GO:0016788 AT5G62930.1 - SGNH hydrolase-type esterase superfamily protein Cre03.g172451 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 17 - - g3556.t1,Cre03.g172450.t1.2 - - - - - - - - - Cre02.g118300 RHE,HEL12 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 DEAD box ATP-dependent RNA helicase DEAD box ATP-dependent RNA helicase. Previously annotated as RHE g2455.t1,Cre02.g118300.t1.1,HEL12,RHE PF00271,PF08152,PF00270 PTHR24031,PTHR24031:SF22 KOG0331 - - GO:0003676,GO:0004386,GO:0005524,GO:0003723,GO:0005634,GO:0008026 AT5G62190.1 PRH75 DEAD box RNA helicase (PRH75) Cre03.g162366 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g3328.t1,Cre03.g162350.t1.2 PF00394,PF07731,PF07732 PTHR11709 - - - GO:0016491,GO:0055114,GO:0005507 AT3G09220.1 LAC7 laccase 7 Cre17.g716500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g17344.t1,Cre17.g716500.t1.1, g17344.t2 - - - - - - - - - Cre14.g618750 FAP246 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 14 Flagellar Associated Protein Calpain cystein protease and Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802]. Possibly an adenylate cyclase g14908.t1 - PTHR10588 KOG0617 - - - AT5G19680.1 - Leucine-rich repeat (LRR) family protein Cre09.g389023 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 - - g9630.t1,Cre02.g123950.t1.1 - - - - - - - - - Cre06.g254200 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g5714.t1,Cre06.g254200.t1.1 - - - - - - - - - Cre17.g710351 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - - - g17203.t1 - PTHR12270,PTHR12270:SF7 - - - - - - - Cre01.g036500 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g820.t2, g820.t1,Cre01.g036500.t1.1 - - - - - - - - - Cre16.g654400 - 0 1 1.0 nan 0 1 1.0 nan M n - 18 - - g15820.t1 - - - - - - - - - Cre03.g202449 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 9 - - g4388.t1,Cre19.g752900.t1.1,Cre19.g752900.t1.2 PF00168 PTHR10774,PTHR10774:SF1 - - - GO:0005515 AT1G53590.1 NTMC2T6.1,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein Cre03.g146247 NUOS4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 NADH:ubiquinone oxidoreductase 18 kDa subunit NADH:ubiquinone oxidoreductase 18 kD-like subunit. Complex I AQDQ subunit, mitochondrial [=NDUFS4]. gi|34334026|gb|AAQ64640.1| [PMID: 15710684; PMID: 15450959] g2977.t1,Cre01.g061100.t1.1,Cre01.g061100.t1.2,NUOS4 PF04800 PTHR12219 - 1.6.5.3,1.6.99.3 K03937 GO:0005743,GO:0016651,GO:0022900 AT5G67590.1 FRO1 NADH-ubiquinone oxidoreductase-related Cre13.g605386 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g14602.t5,Cre13.g605451.t2.1, g14602.t3,Cre13.g605451.t5.1, g14602.t1,Cre13.g605451.t4.1, g14602.t4,Cre13.g605451.t1.2, g14602.t2,Cre13.g605451.t3.1 - - - - - - - - - Cre12.g548100 UBC7 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 Ubiquitin-protein ligase Putative ubiquitin-protein ligase (E3, HECT domain) g13589.t1,UBC7 PF00632 PTHR11254,PTHR11254:SF122 - - - GO:0005622,GO:0006464,GO:0016881 AT1G55860.1 UPL1 ubiquitin-protein ligase 1 Cre11.g481050 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g11941.t1,Cre11.g481050.t1.1 PF00505 PTHR13711 KOG0381 - - GO:0003677 AT4G23800.2 - HMG (high mobility group) box protein Cre08.g366300 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g8583.t1 - - - - - - - - - Cre02.g102551 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 - - g2094.t1 - - - - - - - - - Cre05.g247850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g5176.t1 PF00293 - - - - GO:0016787 - - - Cre16.g675500 FKB16-5,FKB8 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase); homologous to Cyanobacterial FKBPs and At5g45680 (FKBP13, thylakoid lumen); but could be mitochondrial as it lacks a RR TAT targeting motif [PMID: 15701785] g16608.t1,Cre16.g675500.t1.1,FKB8 PF00254 PTHR10516 KOG0544 - - GO:0006457 AT5G45680.1 ATFKBP13,FKBP13 FK506-binding protein 13 Cre10.g432900 AKR3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 - - g10681.t1,Cre10.g432900.t1.1,AKR3 PF00248 PTHR11732:SF34,PTHR11732 KOG1577 1.1.1.21 K00011 GO:0016491,GO:0055114 AT2G37760.1 - NAD(P)-linked oxidoreductase superfamily protein Cre17.g741150 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 17 - - g17926.t2, g17926.t1 - PTHR26393:SF499,PTHR26393 KOG0472 2.7.11.1 K13420 - AT5G46330.1 FLS2 Leucine-rich receptor-like protein kinase family protein Cre07.g324222 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g7490.t5, g7490.t4, g7490.t1, g7490.t3, g7490.t2 - - - - - - - - - Cre16.g663350 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 12 - - g16015.t1,Cre16.g663350.t1.1 PF07724,PF10431 PTHR11262 KOG0745 - K03544 GO:0005524 AT5G53350.1 CLPX CLP protease regulatory subunit X Cre08.g373500 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 7 - - g8802.t1 - - - - - - - - - Cre03.g195300 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g4044.t1,Cre03.g195300.t1.1 - - - - - - - - - Cre07.g346400 FKM6 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 6 - - g8059.t1,FKM6 - - - - - - - - - Cre10.g425850 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g10524.t1,Cre10.g425850.t1.1 - - - - - - - - - Cre16.g655750 TEK1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g15852.t1,Cre16.g655750.t1.1,TEK1 PF03148 PTHR19960,PTHR19960:SF1 KOG2685 - - GO:0000226,GO:0005874 - - - Cre02.g110650 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 2 - - g2271.t1,Cre02.g110650.t1.1 PF10250 - - - - - AT3G05320.1 - O-fucosyltransferase family protein Cre12.g535900 ARL1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 ARF-like GTPase Expressed Protein. ARF-like GTPase, involved in vesicle trafficking in the late secretory system. Called ARFE group in Arabidopsis g13180.t1,ARL1 PF00025 PTHR11711 KOG0070 - K07942 GO:0005525 AT2G24765.1 ARF3,ARL1,ATARL1 ADP-ribosylation factor 3 Cre05.g236950 SRH11 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 14 - - g5452.t1,SRH11 PF00176,PF00271 PTHR10799,PTHR10799:SF43 KOG1000 3.6.4.12 K14440 GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT5G07810.1 - SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein Cre16.g686300 - 0 1 1.0 nan 0 1 1.0 nan C n - 18 - - g16368.t1,Cre16.g686300.t1.1 - - - - - - - - - Cre12.g497850 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g12628.t1,Cre12.g497850.t1.1 - - - - - - - - - Cre01.g048050 COA3 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g1067.t1,Cre01.g048050.t1.1,COA3 PF04127 PTHR12290,PTHR12290:SF2 KOG2728 6.3.2.5 K01922 - AT5G02080.1 - DNA / pantothenate metabolism flavoprotein Cre03.g167450 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 - - g3437.t1 - - - - - - - - - Cre09.g388852 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9523.t1 - - - - - - - - - Cre09.g409801 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g10154.t1,Cre09.g409800.t1.3 PF01966 PTHR11373,PTHR11373:SF9 KOG2681 - - GO:0008081,GO:0046872 AT5G40270.1 - HD domain-containing metal-dependent phosphohydrolase family protein Cre16.g683650 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 10 - - g16429.t1,Cre16.g683650.t1.1 PF07714 PTHR23257:SF286,PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT4G35780.1 - ACT-like protein tyrosine kinase family protein Cre16.g657450 MPA12 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - - - - g15887.t1,MPA12 PF00149 - - - - GO:0016787 - - - Cre03.g156550 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g3196.t1 PF00610 PTHR22829,PTHR22829:SF4 - - - GO:0035556 AT3G11920.1 - glutaredoxin-related Cre03.g153700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 13 - - g3131.t1 - - - - - - - - - Cre03.g173550 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 1 - - g3579.t1,Cre03.g173550.t1.1 - - - - - - AT1G70900.1 - - Cre09.g397845 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 10 - - g9875.t1 PF00488,PF05192 PTHR11361 - - - GO:0005524,GO:0006298,GO:0030983 AT4G02070.1 ATMSH6,MSH6,MSH6-1 MUTS homolog 6 Cre08.g370850 UBC18 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g8689.t1,UBC18 PF00179 PTHR24067:SF17,PTHR24067 KOG0420 6.3.2.19 K10579 GO:0016881 AT4G36800.1 RCE1 RUB1 conjugating enzyme 1 Cre02.g111014 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 18 - - g2280.t1,Cre02.g111016.t1.2 PF00069 PTHR24055:SF167,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT3G18040.1 MPK9 MAP kinase 9 Cre09.g405100 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g9148.t1, g9148.t2 - - - - - - - - - Cre01.g049900 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g1104.t1 - - - - - - AT2G43235.1 - - Cre17.g696250 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g16889.t2, g16889.t1 PF02854 PTHR23253,PTHR23253:SF20 KOG0401 - K03260 GO:0005515,GO:0016070 AT3G60240.4 CUM2,EIF4G eukaryotic translation initiation factor 4G Cre10.g422500 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 9 - - g10453.t1 - - - - - - - - - Cre11.g467592 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g11522.t1,Cre18.g748850.t1.1 - PTHR11785,PTHR11785:SF91 KOG1289 - - GO:0003333,GO:0015171,GO:0016020 AT2G01170.1 BAT1 bidirectional amino acid transporter 1 Cre17.g710850 TPT29 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g17213.t1,Cre17.g710850.t1.1,TPT29 PF03151 PTHR11132 KOG1441 - - - AT2G30460.1 - Nucleotide/sugar transporter family protein Cre08.g372750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8730.t1 - - - - - - - - - Cre11.g467591 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11521.t1,Cre18.g748900.t1.1,Cre18.g748900.t1.2 PF01585 PTHR13288,PTHR13288:SF8 KOG1996 - K12840 GO:0003676,GO:0005622 AT1G30480.1 DRT111 D111/G-patch domain-containing protein Cre26.g756847 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g18294.t1,Cre59.g791650.t1.1,Cre59.g791650.t1.2 - PTHR12406:SF24,PTHR12406 - - - - - - - Cre07.g344000 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 12 - - g8003.t1 PF03629 - - - - - AT3G53010.1 - Domain of unknown function (DUF303) Cre11.g467596 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g11526.t1,Cre18.g748650.t1.1 - - - - - - - - - Cre16.g678885 - 0 1 1.0 nan 0 1 1.0 nan - n - 10 - - g16762.t1,Cre01.g067500.t1.1 - - - - - - - - - Cre08.g364450 NAT1 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 Peptide alpha-N-acetyltransferase - g8533.t1,Cre08.g364450.t1.1,NAT1 PF00583 PTHR23091,PTHR23091:SF4 KOG3235 2.3.1.88 K00670 GO:0008080,GO:0008152 AT5G13780.1 - Acyl-CoA N-acyltransferases (NAT) superfamily protein Cre17.g704500 - 0 1 1.0 nan 0 1 1.0 nan SP n - 6 - - g17078.t1 - - - - - - - - - Cre10.g426350 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - - - - g10535.t1, g10535.t2, g10535.t3 - - - - - - AT4G01995.1 - - Cre02.g082150 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g1505.t1 - PTHR20861:SF1,PTHR20861 - - - - AT2G17265.1 DMR1,HSK homoserine kinase Cre03.g172600 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g3559.t1,Cre03.g172600.t1.1 - - - - - - AT3G54360.1 - zinc ion binding Cre12.g490850 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 2 - - g12168.t1 PF03810,PF02985 PTHR10527,PTHR10527:SF6 KOG2171 - - GO:0006886,GO:0008565,GO:0005515 AT4G27640.1 - ARM repeat superfamily protein Cre01.g001400 ZMP1 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 12 Zinc-metallopeptidase-like protein Partial sequence similar to leishmanolysin-like peptidase (peptidase M8 family); neutral zinc metallopeptidases; zinc-binding site; EGF-like region g31.t1,ZMP1 PF01457 PTHR10942 KOG4462 3.4.24.- K13539 GO:0004222,GO:0006508,GO:0007155,GO:0008270,GO:0016020 AT5G42620.2 - metalloendopeptidases;zinc ion binding Cre02.g115950 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g2400.t1,Cre02.g115950.t1.1 PF00722 PTHR10963,PTHR10963:SF6 - - - GO:0004553,GO:0005975 - - - Cre02.g103700 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 10 - - g2119.t1 - - - - - - - - - Cre12.g502950 CPL15 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - - - - g12511.t1 PF01479 PTHR10436:SF44,PTHR10436 KOG4837 - - GO:0003723 AT1G53120.1 - RNA-binding S4 domain-containing protein Cre07.g314500 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n downregulated - - - g7276.t1 PF00069 PTHR26392:SF152,PTHR26392 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT2G35050.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre16.g680450 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 7 - - g16499.t1 - - - - - - AT5G58100.1 - - Cre16.g680454 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g16777.t1,Cre01.g068250.t1.1,Cre01.g068250.t1.2 - - - - - - - - - Cre12.g513150 MIA40 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 Mia40, mitochondrial intermembrane space protein involved in protein import. Intermembrane space factor involved in mitochondrial protein import. Similar to Arabidopsis Mia40 (AT5G55660.1) and to yeast Mia40 (YKL195W). g12670.t1,Cre12.g513150.t1.1 PF08766 PTHR13468 - - - - AT5G55660.1 - DEK domain-containing chromatin associated protein Cre03.g173950 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 13 - - g3588.t1 PF08495 - - - - - - - - Cre25.g756397 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g18284.t1, g18284.t2 PF00078 PTHR19446 - - - GO:0003723,GO:0003964,GO:0006278 AT4G20520.1 - RNA binding;RNA-directed DNA polymerases Cre09.g410450 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g10169.t1,Cre09.g410450.t1.1 PF00249 - - - - - AT3G10760.1 - Homeodomain-like superfamily protein Cre24.g755797 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g18264.t1,Cre05.g231650.t1.1 - - - - - - - - - Cre03.g181750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated - - - g3767.t1,Cre03.g181750.t1.1, g3767.t2 - - - - - - - - - Cre14.g631650 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 14 - - g15223.t1 - - - - - - - - - Cre07.g345350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g8036.t1 PF00249 PTHR10641 - - - - AT5G67300.1 ATMYB44,ATMYBR1,MYB44,MYBR1 myb domain protein r1 Cre12.g489000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g12206.t1 PF00170 - - - - GO:0003700,GO:0006355,GO:0043565,GO:0046983 AT1G32150.1 AtbZIP68,bZIP68 basic region/leucine zipper transcription factor 68 Cre12.g489001 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12207.t1,Cre12.g488950.t1.2 - - - - - - - - - Cre06.g277700 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g6223.t1 - PTHR13205,PTHR13205:SF9 - 2.7.1.108 K00902 - AT3G45040.1 - phosphatidate cytidylyltransferase family protein Cre08.g367900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 17 - - g8620.t2,Cre08.g367900.t1.1, g8620.t1 - - - - - - - - - Cre01.g017500 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 1 - - g414.t1,Cre01.g017500.t1.1 PF01172,PF09377 PTHR10927 KOG2917 - K14574 GO:0042254,GO:0045727 AT1G43860.1 - sequence-specific DNA binding transcription factors Cre17.g723400 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n upregulated 6 - - g17498.t1,Cre17.g723400.t1.1 - - - - - - - - - Cre06.g300550 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g6954.t1,Cre06.g300550.t1.1 PF02493 - - - - - AT2G35170.1 - Histone H3 K4-specific methyltransferase SET7/9 family protein Cre01.g009650 BUG25 - 0 1 1.0 nan 0 1 1.0 nan M Y - 10 Basal body protein and putative AP2 domain transcription factor Basal body protein and putative AP2 domain transcription factor, found in basal body proteome [PMID: 15964273]. Transcript upregulated during flagellar regeneration. g243.t1,Cre01.g009650.t1.1 PF00847 PTHR11795:SF332,PTHR11795 - - K09284 GO:0003700,GO:0006355 AT5G57390.1 AIL5,CHO1,EMK AINTEGUMENTA-like 5 Cre07.g349520 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g8132.t1 PF00023,PF00069 PTHR23257 KOG0192 - - GO:0005515,GO:0004672,GO:0005524,GO:0006468 AT4G24480.1 - Protein kinase superfamily protein Cre16.g681500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g16473.t1,Cre16.g681500.t1.1 PF06821 PTHR15394 - - K07002 GO:0016787 - - - Cre14.g609400 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g14691.t1 - - KOG1635 - - - - - - Cre02.g144251 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g2589.t1 - - - - - - - - - Cre09.g401219 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 3 - - g9985.t1,Cre02.g138850.t1.1,Cre02.g138850.t1.2 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 AT2G04740.1 - ankyrin repeat family protein Cre02.g083600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g1539.t1, g1539.t2,Cre02.g083600.t1.1 PF06071,PF01926 PTHR23305 KOG1491 - - GO:0005525,GO:0005622 AT1G30580.1 - GTP binding Cre08.g362850 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 10 - - g8498.t1 - PTHR21678 - - - - AT5G22120.1 - - Cre12.g503600 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g12497.t1,Cre12.g503600.t1.1 PF00560 PTHR23155,PTHR23155:SF273 - - - GO:0005515 AT5G07910.1 - Leucine-rich repeat (LRR) family protein Cre07.g317850 FBB10 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 14 Flagellar/basal body protein Conserved protein found in ciliated organisms, unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation g7348.t1,Cre07.g317850.t1.1,FBB10 - PTHR14845 - - - - - - - Cre16.g664301 POLQ1 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 10 - - g16038.t1,Cre16.g664300.t1.3,POLQ1 PF00271,PF00476,PF00270 PTHR11752:SF3,PTHR11752 KOG0950 2.7.7.7 K02349 GO:0003676,GO:0004386,GO:0005524,GO:0003677,GO:0003887,GO:0006260,GO:0008026 AT4G32700.2 TEB helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding Cre02.g080550 PDE26 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 9 - - g1472.t1,PDE26 PF00012,PF00233 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 AT3G09440.1 - Heat shock protein 70 (Hsp 70) family protein Cre12.g547350 CYG31 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 Adenylate/guanylate cyclase C-terminal domain similar to membrane guanylyl cyclase OlGC1 [Oryzias latipes] g13606.t1 - - - - - - - - - Cre12.g512202 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g12304.t1 - - - - - - - - - Cre12.g512200 MFT26 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 2 - - g12302.t1,MFT26 PF07690 PTHR24003:SF187,PTHR24003 KOG2615 - - GO:0016021,GO:0055085 AT5G13750.1 ZIFL1 zinc induced facilitator-like 1 Cre11.g468200 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g11747.t1 - - - - - - - - - Cre03.g204300 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 4 - - g4229.t1 - - - - - - AT5G16810.1 - Protein kinase superfamily protein Cre11.g475600 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 13 - - g11814.t1,Cre11.g475600.t1.1 - - - - - - - - - Cre17.g706950 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g17129.t1,Cre17.g706950.t1.1 - - - - - - - - - Cre02.g074600 CGL60 - 0 5 1.0 1.0 0 5 1.0 1.0 O Y - - Predicted protein Conserved expressed protein of unknown function. Contains a PPPDE putative peptidase domain g1329.t1 PF05903 PTHR12378,PTHR12378:SF2 KOG0324 - - - AT4G25660.1 - PPPDE putative thiol peptidase family protein Cre12.g544450 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated - - - g13673.t1,Cre12.g544450.t1.1 - - - - - - - - - Cre09.g391875 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g9708.t2,Cre02.g127371.t2.1, g9708.t1,Cre02.g127371.t1.1,Cre02.g127371.t1.2 PF00400 PTHR22847,PTHR22847:SF188 - - - - AT5G56190.2 - Transducin/WD40 repeat-like superfamily protein Cre12.g487400 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g12240.t1,Cre12.g487400.t1.1 PF03556 PTHR12281 KOG3077 - - - AT3G12760.1 - - Cre16.g657200 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g15882.t1 PF09118,PF07250 - - - - - AT1G67290.1 - glyoxal oxidase-related protein Cre12.g529600 RPA1 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 DNA-directed RNA polymerase I subunit 1 - g13039.t1,Cre12.g529600.t1.1,RPA1 PF05000,PF04983,PF04997,PF04998,PF00623 PTHR19376:SF11,PTHR19376 KOG0262 2.7.7.6 K02999 GO:0003677,GO:0003899,GO:0006351,GO:0005634,GO:0008270 AT3G57660.1 NRPA1 nuclear RNA polymerase A1 Cre03.g158700 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g3249.t1,Cre03.g158700.t1.1 - - - - - - - - - Cre07.g346650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g8066.t1 PF00117 PTHR11922:SF11,PTHR11922 - - - - AT2G23960.1 - Class I glutamine amidotransferase-like superfamily protein Cre06.g302150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g6992.t1 - - - - - - - - - Cre03.g199871 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g4365.t1,Cre19.g751900.t1.1,Cre19.g751900.t1.2 - - - - - - - - - Cre03.g199652 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g4335.t1 - - - - - - - - - Cre03.g199650 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g4334.t1 - - - - - - - - - Cre09.g403500 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g9192.t1,Cre09.g403500.t1.1 PF00023 - - - - GO:0005515 AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre05.g242850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g5289.t1,Cre05.g242850.t1.1 - - - - - - - - - Cre02.g089450 HRP5 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g1669.t1,Cre02.g089450.t1.1,HRP5 - - - - - - - - - Cre08.g363100 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 10 - - g8503.t1 PF01607 PTHR23301 - - - GO:0005576,GO:0006030,GO:0008061 - - - Cre10.g456400 DAT1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 11 Dicarboxylate/amino acid cation sodium transporter Related to dicarboxylate amino acids cation sodium proton (DAACS) transporter; DAACS family transporter absent in plants g11198.t1,DAT1, g11198.t2,DAT1 PF00375 PTHR11958:SF27,PTHR11958 KOG3787 - K05613 GO:0006835,GO:0016020,GO:0017153 - - - Cre17.g736650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 2 - - g17819.t1,Cre17.g736650.t1.1 PF11940,PF01433 PTHR11533:SF8,PTHR11533 KOG1046 3.4.11.2 K01256 GO:0008270,GO:0006508,GO:0008237 AT1G63770.4 - Peptidase M1 family protein Cre02.g081600 PHX3 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g1494.t1,PHX3 PF03171 PTHR10869 - - - GO:0016491 AT5G18900.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre03.g159600 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3268.t1,Cre03.g159600.t1.1 - - - - - - - - - Cre10.g463200 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g11351.t1,Cre10.g463200.t1.1 - - - - - - - - - Cre02.g105287 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g2158.t1,Cre02.g105287.t1.1 PF01585 PTHR21032 - - - GO:0003676,GO:0005622 AT3G57910.1 - D111/G-patch domain-containing protein Cre03.g175400 PGI1 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Phosphoglucose isomerase Phosphoglucose isomerase (PGI), phosphohexose isomerase, glucose-6-phosphate isomerase [EC:5.3.1.9] g3621.t1, g3621.t2,Cre03.g175400.t1.1 PF00342 PTHR11469 KOG2446 5.3.1.9 K01810 GO:0004347,GO:0006094,GO:0006096 AT5G42740.1 - Sugar isomerase (SIS) family protein Cre09.g386250 SMM33 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g9099.t1,Cre09.g386250.t1.1,SMM33 - - - - - - - - - Cre03.g207153 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g4431.t1,Cre19.g754800.t1.1,Cre19.g754800.t1.2 - - - - - - - - - Cre03.g207150 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 4 - - g4166.t1 PF01266 PTHR16128:SF5,PTHR16128 - - - GO:0016491 AT3G04650.1 - FAD/NAD(P)-binding oxidoreductase family protein Cre12.g540351 SELW2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 18 - - g13770.t1,Cre12.g540300.t1.2,SELW2 - - - - - - - - - Cre06.g282050 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - - - - g6560.t1,Cre06.g282050.t1.1 - - - - - - - - - Cre06.g279700 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g6503.t1 PF10162 PTHR15535,PTHR15535:SF1 KOG3544 - - - - - - Cre08.g382200 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g8992.t2, g8992.t1 - PTHR11584:SF273,PTHR11584 - - - - - - - Cre16.g658200 - 0 13 1.0 1.0 0 13 1.0 1.0 M n - 13 - - g15903.t1 - PTHR25719:SF5,PTHR25719 KOG4462 - - - AT4G13750.1 NOV Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein Cre13.g576050 ZIP2 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 16 Zinc/iron transporter Related to mammalian homologs; apperas as CrZIP13 in PMID: 15710683; PMID: 16766055 g14157.t1 PF02535 PTHR11040,PTHR11040:SF13 - - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 AT1G55910.1 ZIP11 zinc transporter 11 precursor Cre03.g200100 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g4325.t1 PF00789 PTHR23322:SF15,PTHR23322 KOG1363 - - GO:0005515 AT4G10790.1 - UBX domain-containing protein Cre09.g397438 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g9864.t1,Cre02.g134350.t1.1 - - - - - - - - - Cre14.g630883 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g15201.t1 PF03405 - - - - GO:0006631,GO:0045300,GO:0055114 AT2G43710.1 FAB2,SSI2 Plant stearoyl-acyl-carrier-protein desaturase family protein Cre16.g659150 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g15924.t1 PF00076 PTHR24011,PTHR24011:SF57 KOG4207 - - GO:0003676 AT5G46840.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre03.g207489 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g4434.t1,Cre19.g754950.t1.1,Cre19.g754950.t1.2 - - - - - - - - - Cre04.g214000 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g4697.t1 PF00530 PTHR19331:SF421,PTHR19331 KOG4462 - - GO:0005044,GO:0016020 AT5G10020.2 - Leucine-rich receptor-like protein kinase family protein Cre06.g295150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g6832.t1 PF11744 - - - - GO:0010044 - - - Cre08.g358570 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 2 - - g8385.t1,Cre28.g776600.t1.1,Cre28.g776600.t1.2 PF00153 PTHR24089:SF144,PTHR24089 KOG0756 - - - AT5G51050.1 - Mitochondrial substrate carrier family protein Cre08.g358572 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - Integral membrane protein, plant GCPR-like Mlo family - g8387.t1,Cre28.g776500.t1.1 PF03094 - - - - GO:0008219,GO:0016021 AT2G44110.2 ATMLO15,MLO15 Seven transmembrane MLO family protein Cre08.g358573 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 16 - - g8388.t1,Cre28.g776450.t1.1,Cre28.g776450.t1.2 - - KOG4412 - - - - - - Cre08.g358574 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 11 - - g8389.t1,Cre28.g776400.t1.1,Cre28.g776400.t1.2 - - - - - - - - - Cre08.g358575 TRP7 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 9 Transient receptor potential ion channel protein - g8390.t1,TRP7 PF00520 - KOG4462 - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 - - - Cre08.g358576 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g8391.t1,Cre28.g776300.t1.1 - - - - - - - - - Cre08.g358578 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 14 - - g8393.t1,Cre28.g776200.t1.1 - - - - - - - - - Cre13.g564700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g13892.t1,Cre13.g564700.t1.1 - - - - - - - - - Cre17.g727400 HRP8 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g17586.t1,HRP8 - - - - - - AT4G23470.1 - PLAC8 family protein Cre02.g147302 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g2516.t1,Cre02.g147200.t1.2 PF00155 PTHR11751:SF35,PTHR11751 KOG0257 - - GO:0009058,GO:0016769,GO:0030170 AT2G22250.2 AAT,ATAAT,MEE17 aspartate aminotransferase Cre02.g147301 - 0 1 1.0 nan 0 1 1.0 nan O n - 18 - - g2515.t1,Cre02.g147250.t1.3 - - - - - - - - - Cre12.g485000 FAP182 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g12036.t1 - - - - - - - - - Cre12.g532250 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 9 - - g13095.t1 PF00027 - - - - - - - - Cre07.g321951 NRAMP2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 2 - - g7440.t1,Cre07.g321950.t1.2 PF01566 PTHR11706,PTHR11706:SF13 KOG1291 - - GO:0005215,GO:0006810,GO:0016020 AT1G80830.1 ATNRAMP1,NRAMP1,PMIT1 natural resistance-associated macrophage protein 1 Cre16.g685500 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 13 - - g16387.t2,Cre16.g685500.t1.1, g16387.t1 PF07646 PTHR23244,PTHR23244:SF103 - - K10317 GO:0005515 AT1G74150.1 - Galactose oxidase/kelch repeat superfamily protein Cre12.g553500 ANK15 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 9 Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g13466.t1,ANK15 PF00023 - - - - GO:0005515 AT3G58760.1 - Integrin-linked protein kinase family Cre10.g453050 CYCM1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 17 Chlamy-specific cyclin Chlamydomonas-specific cyclin. Novel protein cyclin subfamily g11125.t1,Cre10.g453050.t1.1,CYCM1, g11125.t2,CYCM1 PF00134 PTHR10026,PTHR10026:SF28 KOG0834 - - GO:0000079,GO:0006355,GO:0019901 AT5G45190.1 - Cyclin family protein Cre10.g454000 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 15 - - g11147.t1,Cre10.g454000.t1.1 PF01582 - - - - GO:0004888,GO:0007165,GO:0031224,GO:0045087 - - - Cre14.g625225 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 7 - - g15061.t1 PF04488 PTHR12042,PTHR12042:SF4 - - - - AT2G38152.1 - alpha 1,4-glycosyltransferase family protein Cre16.g663950 ERG3 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 7 - - g16031.t1,Cre16.g663950.t1.1,ERG3 PF04116 PTHR11863,PTHR11863:SF2 KOG0872 1.14.21.6 K00227 GO:0005506,GO:0006633,GO:0016491,GO:0055114 AT3G02580.1 BUL1,DWF7,STE1 sterol 1 Cre06.g270500 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - - - - g6069.t1 PF00759,PF03067 PTHR22298:SF3,PTHR22298 - - - GO:0004553,GO:0005975,GO:0019028 AT4G11050.1 AtGH9C3,GH9C3 glycosyl hydrolase 9C3 Cre03.g188050 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g3896.t1,Cre03.g188050.t1.1 - - - - - - - - - Cre13.g579850 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g14246.t1, g14246.t2,Cre13.g579850.t1.1 PF07970 PTHR10984 KOG2667 - - - AT1G36050.2 - Endoplasmic reticulum vesicle transporter protein Cre01.g011450 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g286.t1 - - - - - - - - - Cre10.g447950 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 - - g11016.t1,Cre10.g447950.t1.1 - - - - - - - - - Cre01.g012900 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 9 - - g318.t1 PF01842 - - - - GO:0008152,GO:0016597 AT1G69040.2 ACR4 ACT domain repeat 4 Cre09.g392060 ZIP4 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 Zinc/iron transporter Related to bacterial zupT homologs; appears as CrZIP12 in PMID: 15710683; PMID: 16766055 g9714.t2,Cre02.g127650.t2.1,ZIP4, g9714.t1,Cre02.g127650.t1.1,ZIP4 PF02535 PTHR11065 - - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 AT3G20870.1 ZTP29 ZIP metal ion transporter family Cre13.g578451 TSL1 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 4 - - g14211.t1,TSL1 PF00133,PF08264 PTHR11946:SF36,PTHR11946 KOG0435 6.1.1.4 K01869 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418 AT4G04350.1 EMB2369 tRNA synthetase class I (I, L, M and V) family protein Cre07.g327300 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 11 - - g7612.t1, g7612.t2 - - KOG0487 - - - - - - Cre09.g416500 CGL151 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 1 - - g10308.t1,Cre09.g416500.t1.1 - PTHR21213 - - - - AT3G02790.1 - zinc finger (C2H2 type) family protein Cre03.g206351 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g4185.t1,Cre03.g206300.t1.2 - - - - - - - - - Cre01.g035500 VPS34 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 16 Phosphatidylinositol-3-kinase, probably vacuolar Phosphatidylinositol-3-kinase, probably vacuolar. Expressed Protein. Similar to VPS34, a phosphatidylinositol-3-kinase, involved in vacuolar transport and lipid metabolism; identical to partial cDNA sequence gi|2109288|gb|U97662.1|CRU97662. Previously a g800.t1,Cre01.g035500.t1.1,VPS34 PF00792,PF00454,PF00613 PTHR10048,PTHR10048:SF7 KOG0906 2.7.1.137 K00914 GO:0004428,GO:0046854,GO:0048015,GO:0005942,GO:0016303,GO:0016773 AT1G60490.1 ATVPS34,PI3K,VPS34 vacuolar protein sorting 34 Cre05.g243450 GOX1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 Glyoxal or galactose oxidase The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi (both use the same Tyr radical / metal mechanism); the higher plant homologues are secreted, but the fate of the Chlamydomonas is g5273.t2,GOX1, g5273.t1,GOX1 PF09118,PF07250 - KOG0487 - - - AT1G19900.1 - glyoxal oxidase-related protein Cre01.g008450 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g214.t1,Cre01.g008450.t1.1 PF03800 PTHR21650 KOG4438 - K11548 GO:0000775,GO:0007067 AT1G61000.1 - - Cre11.g467540 GOX7 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - Glyoxal or galactose oxidase - g11470.t2,GOX7, g11470.t1 PF09118,PF07250 - - - - - AT3G57620.1 - glyoxal oxidase-related protein Cre11.g467541 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g11471.t1,Cre44.g787750.t1.1,Cre44.g787750.t1.2 PF00571 PTHR13780 - - - GO:0005515 - - - Cre11.g467542 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g11472.t1,Cre44.g787800.t1.1 - - - - - - - - - Cre01.g038900 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 10 - - g870.t1 PF12146 PTHR11614,PTHR11614:SF28 KOG1455 - - - AT1G73480.1 - alpha/beta-Hydrolases superfamily protein Cre11.g467544 IDI1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 Isopentenyl-diphosphate delta-isomerase Isopentenyl-diphosphate delta-isomerase type 1(isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase ) (IPI) (PMID: 10750717; PMID:9736763); putative chloroplast precursor; may display dual targeting to chloroplast and cytosol g11474.t1,Cre44.g787900.t1.1,Cre44.g787900.t1.2,IDI1 PF00293 PTHR10885,PTHR10885:SF0 KOG0142 5.3.3.2 K01823 GO:0016787,GO:0004452,GO:0008299 AT5G16440.1 IPP1 isopentenyl diphosphate isomerase 1 Cre12.g484350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 16 - - g12021.t1 PF00571 PTHR13780:SF13,PTHR13780 KOG1764 - - GO:0005515 AT1G09020.1 ATSNF4,SNF4 homolog of yeast sucrose nonfermenting 4 Cre11.g467548 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g11478.t1,Cre44.g788031.t1.1,Cre44.g788031.t1.2 - - - - - - - - - Cre04.g223800 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g4884.t2,Cre04.g223800.t1.1, g4884.t1 PF01329 PTHR12599 KOG4073 - - GO:0006729,GO:0008124 AT1G29810.1 - Transcriptional coactivator/pterin dehydratase Cre11.g482276 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g11973.t1 - - - - - - - - - Cre13.g568000 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated - - - g13976.t1,Cre13.g568000.t1.1 - - - - - - - - - Cre10.g464850 MSRA5 - 0 4 1.0 1.0 0 4 1.0 1.0 C n upregulated 9 Peptide methionine sulfoxide reductase Protein-methionine-S-oxide reductase g11390.t1,Cre10.g464850.t1.1 PF01625 PTHR10173:SF4,PTHR10173 KOG1635 1.8.4.11 K07304 GO:0016671,GO:0019538,GO:0055114 AT4G25130.1 PMSR4 peptide met sulfoxide reductase 4 Cre12.g521150 CGL19 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 3 Predicted protein Conserved expressed protein with Dof type zinc finger g12839.t1,Cre12.g521150.t1.1 PF02701 - - - - GO:0003677,GO:0006355,GO:0008270 AT5G39660.1 CDF2 cycling DOF factor 2 Cre06.g291100 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g6747.t1,Cre06.g291100.t1.1 - - - - - - - - - Cre12.g525600 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 16 - - g12934.t1 - PTHR23125,PTHR23125:SF74 KOG1947 - - - AT4G33210.1 SLOMO F-box family protein Cre17.g724450 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g17521.t1 - - - - - - - - - Cre09.g413150 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 10 - - g10234.t1 - - - - - - - - - Cre03.g192300 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g3980.t1,Cre03.g192300.t1.1 - - - - - - - - - Cre12.g524650 HDA18 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g12916.t1,HDA18, g12916.t2,Cre12.g524650.t1.1,HDA18 PF02146 PTHR11085 KOG2683 3.5.1.- K11414 GO:0006342,GO:0006355,GO:0006476,GO:0008270,GO:0016811,GO:0070403 AT5G09230.7 AtSRT2,SRT2 sirtuin 2 Cre01.g050600 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g1118.t1 PF05063 PTHR13107 KOG2097 - - GO:0006139,GO:0008168 AT4G09980.1 EMB1691 Methyltransferase MT-A70 family protein Cre04.g220387 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g4807.t1,Cre04.g220400.t1.2 PF00067 PTHR24305 - - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT3G20130.2 CYP705A22 cytochrome P450, family 705, subfamily A, polypeptide 22 Cre10.g450650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g11075.t1,Cre10.g450650.t1.1 PF00168 - - - - GO:0005515 - - - Cre12.g546027 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - - - - g13797.t1,Cre27.g774700.t1.1 - - - - - - - - - Cre09.g401022 - 0 5 1.0 1.0 0 5 1.0 1.0 O Y - 8 - - g9246.t1,Cre09.g401022.t1.1 PF01370 PTHR10366:SF39,PTHR10366 KOG1371 5.1.3.5 K12448 GO:0003978,GO:0006012,GO:0003824,GO:0044237,GO:0050662 AT1G30620.1 HSR8,MUR4,UXE1 NAD(P)-binding Rossmann-fold superfamily protein Cre09.g388208 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g9607.t1,Cre02.g122850.t1.1,Cre02.g122850.t1.2 PF02678 PTHR13903 - - - - AT2G43120.1 - RmlC-like cupins superfamily protein Cre12.g506400 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 11 - - g12441.t1,Cre12.g506400.t1.1 - - - - - - - - - Cre03.g169700 TMG11 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 1 - - g3494.t1,Cre03.g169700.t1.1,TMG11 PF00588 PTHR12029,PTHR12029:SF22 KOG0838 - - GO:0003723,GO:0006396,GO:0008173 AT5G15390.1 - tRNA/rRNA methyltransferase (SpoU) family protein Cre08.g360600 ERM4 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n downregulated 16 ERD4-related membrane protein Transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration); belongs to a cluster of 4 closely linked and related Chlamydomonas ERM genes g8445.t1,ERM4 PF02714 PTHR13018:SF5,PTHR13018 KOG1134 - - GO:0016020 AT3G21620.1 - ERD (early-responsive to dehydration stress) family protein Cre09.g389550 DNJ13 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 DnaJ-like protein DnaJ-like protein; probably cytosolic, since homologs in Arabidopsis (Q9LH49 and Q9FL54) are predicted to be cytosolic; contains J-domain (pfam00226) at N-terminus g9506.t1 PF00226 PTHR24078,PTHR24078:SF31 KOG0719 - - GO:0031072 AT3G12170.1 - Chaperone DnaJ-domain superfamily protein Cre09.g408500 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 1 - - g10124.t1 PF01866 PTHR10762,PTHR10762:SF1 KOG2648 - - GO:0005737,GO:0017183 AT5G62030.1 - diphthamide synthesis DPH2 family protein Cre03.g149201 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 - - g3034.t1,Cre03.g149200.t1.3 PF00249 PTHR10641 - - - - AT4G18770.1 AtMYB98,MYB98 myb domain protein 98 Cre01.g016100 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - - - g383.t1 - - - - - - - - - Cre13.g586250 COA7 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g14386.t1,Cre13.g586250.t1.1,COA7 PF01121 PTHR10695 KOG3220 - - GO:0004140,GO:0005524,GO:0015937 AT2G27490.1 ATCOAE dephospho-CoA kinase family Cre13.g563006 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g13854.t1,Cre13.g563006.t1.1 - - - - - - - - - Cre09.g391600 MEP1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 Putative IgA-specific metalloendopeptidase Putative IgA-specific metalloendopeptidase g9460.t1,MEP1 - - KOG4361 - - - - - - Cre06.g272100 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g6105.t1 PF04179 - - - - GO:0016763 AT2G40570.1 - initiator tRNA phosphoribosyl transferase family protein Cre06.g281350 LON1 - 0 5 1.0 1.0 0 5 1.0 1.0 M n upregulated 5 Mitochondrial LON protease Belongs to MEROPS peptidase family S16 of ATP-dependent proteases; similar to mitochondrial LON protease homolog from Arabidopsis thaliana g6544.t1,Cre06.g281350.t1.1,LON1 PF00004,PF02190,PF05362 PTHR10046,PTHR10046:SF23 KOG2004 3.4.21.- K08675 GO:0005524,GO:0004176,GO:0006508,GO:0004252 AT5G26860.1 LON1,LON_ARA_ARA lon protease 1 Cre12.g487650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12234.t1 - - - - - - - - - Cre06.g275450 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 10 - - g6176.t1 PF00069,PF00560 PTHR23155:SF252,PTHR23155 KOG0192 - - GO:0004672,GO:0005524,GO:0006468,GO:0005515 AT2G26330.1 ER,QRP1 Leucine-rich receptor-like protein kinase family protein Cre01.g040250 DNJ9 - 0 9 1.0 1.0 0 9 1.0 1.0 O Y - - DnaJ-like protein DnaJ-like protein; might be targeted to chloroplast, as judged from homology to rice Q5QMD6 and to Arabidopsis O80799 predicted (weakly) by TargetP to be chloroplast-targeted; contains O-methyltransferase in N-terminus (pfam01596) (but not the higher plan g898.t1,Cre01.g040250.t1.1 PF12572,PF00226 PTHR10509,PTHR10509:SF0 KOG4188 - - GO:0031072,GO:0008171 AT1G65280.1 - DNAJ heat shock N-terminal domain-containing protein Cre07.g338900 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 11 - - g7883.t1 PF04676,PF04677,PF00076 PTHR12072 KOG2476 - - GO:0003676 AT5G56900.2 - CwfJ-like family protein / zinc finger (CCCH-type) family protein Cre03.g200350 SMM12 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 6 - - g4320.t1,Cre03.g200350.t1.1,SMM12, g4320.t2,SMM12 PF08241 PTHR10108,PTHR10108:SF275 - - - GO:0008152,GO:0008168 - - - Cre01.g048400 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 11 - - g1075.t1 - PTHR12042,PTHR12042:SF3 KOG0982 - - - - - - Cre03.g191650 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 1 - - g3966.t1 - - - - - - - - - Cre12.g513400 EBG1 - 0 20 1.0 1.0 0 20 1.0 1.0 O n - 6 - - g12675.t1,EBG1 PF03639 - KOG2254 - - GO:0016998,GO:0033903 AT5G15870.1 - glycosyl hydrolase family 81 protein Cre17.g713600 SUB13 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 14 - - g17279.t1,SUB13 PF00082 PTHR10795,PTHR10795:SF157 - - - GO:0004252,GO:0006508 AT5G67090.1 - Subtilisin-like serine endopeptidase family protein Cre05.g237450 PSRP1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 10 Plastid-specific ribosomal protein 1 Plastid-specific ribosomal protein 1, imported to chloroplast; Chloroplast small ribosomal subunit protein Plastid-Specific Ribosomal Protein 1. This is a different protein from plastid ribosomal protein S1, product of the PRPS1 gene. Previously annotate g5462.t1,Cre05.g237450.t1.1 PF02482 - - - - GO:0005488,GO:0044238 AT5G24490.1 - 30S ribosomal protein, putative Cre08.g365851 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g8573.t1 PF03055 PTHR10543,PTHR10543:SF6 - - - - AT4G32810.1 ATCCD8,CCD8,MAX4 carotenoid cleavage dioxygenase 8 Cre11.g481250 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g11949.t2, g11949.t1,Cre11.g481250.t1.1 PF00561 PTHR10992,PTHR10992:SF11 KOG4178 - - - AT5G53050.2 - alpha/beta-Hydrolases superfamily protein Cre10.g435550 DOH1 - 0 1 1.0 nan 0 1 1.0 nan O n - 3 Deoxyhypusine hydroxylase/monooxygenase Hydroxylates deoxyhypusine, the last step in formation of hypusine (PMID: 17476569); this unusual aminoacid is found uniquely on a specific residue of eIF5 and is important for the control of cellular proliferation and growth (PMID: 16600425). Previously g10741.t1,Cre10.g435550.t1.1,DOH1 PF03130 PTHR12697 KOG0567 1.14.99.29 K06072 - AT3G58180.1 - ARM repeat superfamily protein Cre10.g442200 ERG6,ERG26 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated - 3-beta hydroxysteroid dehydrogenase/epimerase 3-beta hydroxysteroid dehydrogenase/epimerase. This is an NAD-dependent epimerase/dehydratase (see NED series). Previously annotated as ERG26 g10880.t1,Cre10.g442200.t1.1,ERG26,ERG6 PF01073 PTHR10366,PTHR10366:SF20 KOG1502 - - GO:0003854,GO:0006694 AT4G33360.1 FLDH NAD(P)-binding Rossmann-fold superfamily protein Cre04.g228925 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 1 - - g5010.t1,Cre04.g228939.t1.2 - - - - - - - - - Cre09.g407850 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g10110.t1,Cre09.g407850.t1.1 - - - - - - - - - Cre03.g167550 POC3,CEP290 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 Centriole proteome protein Found in basal body proteome [PMID: 15964273]. Human homolog cep290 localizes to centrosome, and is also called 3H11 antigen. g3439.t1,POC3 - PTHR18879:SF1,PTHR18879 KOG0978 - - - - - - Cre13.g562750 CGLD38 - 0 4 1.0 1.0 0 4 1.0 1.0 C Y - 4 - - g13849.t1,Cre13.g562750.t1.1 - - - - - - AT3G01060.1 - - Cre17.g729200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g17624.t1 PF04678 PTHR13462 - - - - AT5G66650.1 - Protein of unknown function (DUF607) Cre09.g404500 SFI1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 Spindle pole body protein Related to yeast spindle pole body protein SFI1. Contains at least 19 recognizable SFI repeat sequences, which in the yeast protein act as centrin-binding sequences. g9168.t1,SFI1 - - - - - - - - - Cre05.g247300 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 2 - - g5186.t1,Cre05.g247300.t1.1 PF00515 PTHR23083 - - - GO:0005515 AT3G04240.1 SEC Tetratricopeptide repeat (TPR)-like superfamily protein Cre09.g404503 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g9169.t1, g9169.t2 - PTHR10178 - - - - - - - Cre09.g396957 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 10 - - g9851.t1,Cre02.g133750.t1.1 - - - - - - - - - Cre02.g098000 EBM2 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g1993.t1,Cre02.g098000.t1.1,EBM2 PF00150 - - - - GO:0004553,GO:0005975 AT5G66460.1 - Glycosyl hydrolase superfamily protein Cre11.g480700 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g11932.t1, g11932.t2 - - - - - - - - - Cre01.g052601 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 3 - - g1165.t1 PF01136,PF12392 - - - - GO:0006508,GO:0008233 - - - Cre05.g246650 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g5200.t1,Cre05.g246650.t1.1 - - - - - - - - - Cre11.g467659 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g11589.t1,Cre18.g745850.t1.1 PF04934 PTHR13104 - - - GO:0016455,GO:0006357,GO:0016592 AT3G21350.1 MED6 RNA polymerase transcriptional regulation mediator-related Cre01.g053550 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g1184.t1 - - - - - - - - - Cre03.g182850 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 - - g3790.t1 - - - - - - - - - Cre02.g114550 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g2366.t1,Cre02.g114550.t1.1 - - - - - - - - - Cre11.g469300 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g11780.t1 - - - - - - - - - Cre10.g453600 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g11135.t2, g11135.t1,Cre10.g453600.t1.1 PF00173,PF00487 PTHR19353 KOG4232 - - GO:0020037,GO:0006629,GO:0016491,GO:0055114 AT1G77760.1 GNR1,NIA1,NR1 nitrate reductase 1 Cre06.g271600 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g6095.t1 - - - - - - - - - Cre01.g005500 - 0 9 1.0 1.0 0 9 1.0 1.0 O n downregulated 13 - - g132.t1,Cre01.g005500.t1.1 PF02656,PF03105,PF09359 PTHR10783,PTHR10783:SF20 KOG1161 - - - - - - Cre01.g044400 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g993.t1,Cre01.g044400.t1.1 - - - - - - - - - Cre17.g724200 LAL1 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 La protein Contains an N-terminal La domain, two RRMs (RRM-3 at 318-423) and a very strong Nuclear Localization Signal; similar to At4g32720 which functions in Arabidopsis as a genuine La protein (PMID: 17459889); likely involved in stabilization and processsing of g17515.t1,Cre17.g724200.t1.1,LAL1 PF08777,PF00076,PF05383 PTHR22792 KOG4213 - K11090 GO:0003676 AT1G79880.1 - RNA recognition motif (RRM)-containing protein Cre10.g428800 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g10593.t1,Cre10.g428800.t1.1 - - - - - - - - - Cre08.g358900 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g8407.t1,Cre08.g358900.t1.1 PF00156 PTHR22573,PTHR22573:SF9 KOG3367 2.4.2.8 K00760 GO:0009116 AT1G71750.1 HGPT Hypoxanthine-guanine phosphoribosyltransferase Cre09.g401849 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g10002.t1,Cre02.g139638.t1.1,Cre02.g139638.t1.2 PF01753 PTHR13244 - - - GO:0008270 AT1G17110.2 UBP15 ubiquitin-specific protease 15 Cre09.g395600 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 1 - - g9378.t1 PF01926,PF01018 PTHR11702,PTHR11702:SF14 KOG1489 - - GO:0005525,GO:0005622 AT5G18570.1 ATOBGC,CPSAR1,EMB269 GTP1/OBG family protein Cre09.g392654 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g9439.t1,Cre09.g392550.t1.2 - - - - - - - - - Cre09.g392652 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g9437.t1 PF02317 - - - - GO:0016491,GO:0050662,GO:0055114 - - - Cre09.g392653 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g9438.t1, g9438.t2 - - - - - - - - - Cre09.g392650 MOT39 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 9 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g9436.t1,Cre09.g392650.t1.1,MOT39 PF00612,PF00097 PTHR14991 - - - GO:0005515 AT3G16090.1 - RING/U-box superfamily protein Cre06.g262050 AEP1 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 Aldose-1-epimerase Putative aldose-1-epimerase (EC 5.1.3.3) (aldose mutarotase), possible chloroplast localization g5888.t1,Cre06.g262050.t1.1,AEP1 PF01263 PTHR10091 KOG1604 5.1.3.3 K01785 GO:0016853,GO:0019318,GO:0005975 AT3G17940.1 - Galactose mutarotase-like superfamily protein Cre10.g427350 CYP31,CYP39A2 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 7 - - g10557.t1,CYP31 PF00067 PTHR24305 KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT2G42850.1 CYP718 cytochrome P450, family 718 Cre07.g352950 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 8 - - g8208.t1 PF02463 - KOG3262 - - GO:0005524,GO:0005694 - - - Cre03.g143927 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g2860.t1,Cre01.g056150.t1.1,Cre01.g056150.t1.2 - - - - - - - - - Cre09.g396994 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 9 Cytochrome P450, CYP3 superfamily Cytochrome P450, CYP3 superfamily. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP744 family has best BLAST hits to CYP5 family members (thromboxane A2 synthase in a g9852.t1,Cre02.g133800.t1.1 PF00067 PTHR24301,PTHR24301:SF127 KOG0158 5.3.99.5 K01832 GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT2G26170.1 CYP711A1,MAX1 cytochrome P450, family 711, subfamily A, polypeptide 1 Cre09.g394550 RPPK2 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 1 Ribose-phosphate pyrophosphokinase Ribose-phosphate pyrophosphokinase (RPPK) = phosphoribosylpyrophosphate synthetase (P-Rib-PP synthetase) (PRPP synthetase); normally a highly regulated enzyme; PRPP is an essential precursor for purines and for histidine g9399.t1,Cre09.g394550.t1.1 PF00156 PTHR10210 KOG1448 - - GO:0009116 AT2G42910.1 - Phosphoribosyltransferase family protein Cre07.g355200 ORC5 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Origin recognition complex subunit 5 Homologous to eukaryotic ORC5, DNA replication control protein g8260.t1,ORC5 PF00004 - KOG2543 - - GO:0005524 AT4G29910.1 ATORC5,ORC5 origin recognition complex protein 5 Cre10.g426400 TRX22 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g10536.t1,TRX22 PF00085 PTHR15853 KOG0914 - - GO:0045454 AT5G11640.1 - Thioredoxin superfamily protein Cre09.g406625 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g10081.t1 - PTHR24838,PTHR24838:SF447 - - - - - - - Cre14.g632076 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g15232.t1 - - - - - - - - - Cre01.g030200 PP2C4,PPP3 - 0 6 1.0 1.0 0 6 1.0 1.0 O Y - 12 Phosphoprotein phosphatase 2C delta Conserved expressed protein in flagellar proteome [PMID: 15998802], related to protein phosphatase 2C; chloroplast targeted prediction in Arabidopsis. Previously annotaed as PP2C4 g685.t1,Cre01.g030200.t1.1,PP2C4,PPP3 PF00481 PTHR13832,PTHR13832:SF94 KOG0698 - - GO:0003824 AT1G79630.1 - Protein phosphatase 2C family protein Cre03.g159000 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 13 - - g3255.t1 - - - - - - - - - Cre02.g112250 CAL2 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n downregulated 12 - - g2310.t1,Cre02.g112250.t1.1,CAL2 PF00648 PTHR10183:SF154,PTHR10183 - - - GO:0004198,GO:0005622,GO:0006508 AT1G55350.1 ATDEK1,DEK1,EMB1275,EMB80 calpain-type cysteine protease family Cre16.g657850 SEC63 - 0 1 1.0 nan 0 1 1.0 nan SP n - 5 ER-targeted preprotein translocase subunit 63 kDa DnaJ-like protein, interacts with BIP (Hsp70-Homolog in ER) in preprotein import; closest homolog in higher plants is rice Q7XVN7 g15895.t1,Cre16.g657850.t1.1 PF00226,PF02889 PTHR24075 KOG0721 - K09540 GO:0031072 AT1G79940.1 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein Cre12.g557850 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 8 - - g13373.t1 PF00612 - - - - GO:0005515 - - - Cre51.g761597 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g18410.t1 - - - - - - - - - Cre07.g313000 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g7243.t1 PF00271,PF00270 PTHR14074 - - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G01040.2 ASU1,ATDCL1,CAF,DCL1,EMB60,EMB76,SIN1,SUS1 dicer-like 1 Cre12.g556100 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 - - g13410.t1,Cre12.g556100.t1.1 PF07719 PTHR22904,PTHR22904:SF110 - - - - AT1G56440.2 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre02.g109850 GPI2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g2254.t1,GPI2 PF06432 PTHR12982 KOG3059 - K03859 GO:0006506,GO:0016021,GO:0017176 AT2G34980.1 SETH1 phosphatidylinositolglycan synthase family protein Cre03.g187600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g3886.t1,Cre03.g187600.t1.1 - - - - - - - - - Cre10.g437950 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 9 - - g10789.t1,Cre10.g437950.t1.1 PF01074,PF07748,PF09261 PTHR11607:SF2,PTHR11607 KOG4342 3.2.1.24 K01191 GO:0004559,GO:0005975,GO:0006013,GO:0015923,GO:0004553,GO:0008270 - - - Cre10.g462100 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g11328.t1 - - - - - - - - - Cre17.g714400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g17298.t1 - - - - - - - - - Cre08.g378000 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g8899.t1,Cre08.g378000.t1.1 PF09542 PTHR13586 - - - - AT5G45330.1 DCP5-L decapping 5-like Cre03.g166700 FOR1 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 11 Formin Nucleates and catalyzes long chain actin filament formation from actin-profilin precursor complexes. g3421.t1,FOR1 PF02181 PTHR23213:SF80,PTHR23213 KOG1922 - K05745 - AT5G07740.1 - actin binding Cre01.g015250 POLD1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 DNA polymerase delta, catalytic subunit Homologous to eukaryotic DNA polymerase delta, catalytic subunit. Involved in DNA replication; a class B polymerase. See Burgers et al. (2001) (PMID: 11579108). Previously annotated as POLD1 g368.t1,POLD1 PF00136,PF03104 PTHR10322,PTHR10322:SF11 KOG0969 2.7.7.7 K02327 GO:0000166,GO:0003677,GO:0003887,GO:0006260 AT5G63960.1 EMB2780 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases Cre12.g527600 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g12996.t1 - PTHR21737 - - K12865 - AT2G41020.1 - WW domain-containing protein Cre07.g324650 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g7499.t1,Cre07.g324650.t1.1 - - - - - - - - - Cre06.g301951 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g6988.t1,Cre06.g301950.t1.3 - PTHR14881,PTHR14881:SF1 - - - - - - - Cre06.g255050 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g5733.t1,Cre06.g255050.t1.1, g5733.t2 - PTHR12183 - - - - AT3G23280.2 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana Cre07.g348900 DNJ19 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - DnaJ-like protein DnaJ-like protein, probably cytosolic; contains N-terminal J-domain (pfam00226); no homology to other proteins in protein database g8116.t1,Cre07.g348900.t1.1 PF00226 PTHR24078,PTHR24078:SF13 KOG0691 - - GO:0031072 AT5G23590.1 - DNAJ heat shock N-terminal domain-containing protein Cre05.g237600 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g5467.t1 PF09243 PTHR13184 - - - GO:0006412,GO:0008168 AT1G64600.1 - methyltransferases;copper ion binding Cre02.g108450 FAP280 - 0 7 1.0 1.0 0 7 1.0 1.0 O n upregulated 2 Flagellar Associated Protein, transcriptional coactivator-like Flagellar Associated Protein similar to Transcriptional Coactivator-Like Protein; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g2223.t1,Cre02.g108450.t1.1 PF01381,PF08523 PTHR10245 KOG3398 - K03627 GO:0043565 AT2G42680.1 ATMBF1A,MBF1A multiprotein bridging factor 1A Cre09.g400500 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 7 - - g9259.t1 - - - - - - - - - Cre07.g349050 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 8 - - g8119.t1,Cre07.g349050.t1.1 PF02854 - - - - GO:0005515,GO:0016070 AT5G57870.1 eIFiso4G1 MIF4G domain-containing protein / MA3 domain-containing protein Cre12.g500715 - 0 11 1.0 1.0 0 11 1.0 1.0 C n - 6 - - g12561.t1,Cre12.g500715.t1.1 PF00501 PTHR24096 KOG1180 - - GO:0003824,GO:0008152 AT4G23850.1 LACS4 AMP-dependent synthetase and ligase family protein Cre02.g116950 HDA1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g2421.t1,Cre02.g116950.t1.1,HDA1 PF00850 PTHR10625,PTHR10625:SF22 KOG1344 - - - AT4G33470.1 ATHDA14,hda14 histone deacetylase 14 Cre07.g325000 CYP738A1,CYP18 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 14 Cytochrome P450, CYP120 superfamily Cytochrome P450, CYP120 superfamily. The CYP85 clan families CYP85 and CYP90 make brassinosteroids in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols. Previously annotated as CYP738A1 g7507.t1,CYP18 PF00067 PTHR24286,PTHR24286:SF25 KOG0157 - K07437 GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT2G29090.1 CYP707A2 cytochrome P450, family 707, subfamily A, polypeptide 2 Cre07.g351450 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 10 - - g8176.t1 PF08311 PTHR14030 - 2.7.11.1 K06637 - AT2G33560.2 BUBR1 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) Cre08.g379350 TPT,TPT1 - 0 1 1.0 nan 0 1 1.0 nan C Y downregulated 13 Triose phosphate transporter Triose phosphate transporter. Also annotated as TPT g8931.t1,TPT PF03151,PF00892 PTHR11132 KOG1441 - - GO:0016020 AT5G33320.1 ARAPPT,CUE1,PPT Glucose-6-phosphate/phosphate translocator-related Cre01.g040400 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g902.t1,Cre01.g040400.t1.1 - - - - - - - - - Cre07.g342350 PDE14 - 0 1 1.0 nan 0 1 1.0 nan O n - - 3\',5\'-cyclic-nucleotide phosphodiesterase CAMP-specific phosphodiesterase similar to phosphodiesterase 4D of Homo sapiens AAA03592.1 g7939.t1,Cre07.g342350.t1.1,PDE14 PF00233 PTHR11347:SF75,PTHR11347 - 3.1.4.17 K01120 GO:0004114,GO:0007165 - - - Cre17.g709550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g17186.t1,Cre17.g709550.t1.1 PF02373 PTHR10694 - - - - AT4G20400.1 JMJ14,PKDM7B JUMONJI 14 Cre05.g240300 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g5542.t1 - - - - - - - - - Cre07.g329600 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g7667.t1, g7667.t2 PF04969 PTHR12356,PTHR12356:SF3 KOG2265 - - - AT5G53400.1 BOB1 HSP20-like chaperones superfamily protein Cre17.g741050 COV1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 16 - - g17924.t1,COV1 PF04367 - - - - - AT2G20120.1 COV1 Protein of unknown function (DUF502) Cre06.g281650 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 11 - - g6551.t1,Cre06.g281650.t1.1 - - - - - - - - - Cre03.g205450 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 2 - - g4203.t1 - - - - - - - - - Cre02.g145350 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g2560.t1 PF03407 - - - - - - - - Cre10.g460201 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g11283.t1,Cre10.g460200.t1.2 - - - - - - - - - Cre11.g479700 DFO1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11908.t1,Cre11.g479700.t1.1,DFO1 PF01883 PTHR12377 KOG3381 - - - AT1G68310.2 - Protein of unknown function (DUF59) Cre14.g621475 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g14977.t1,Cre14.g621500.t1.3 - - - - - - AT4G17540.1 - - Cre10.g450350 IFT25,FAP232 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 12 Intraflagellar transport protein 25 Conserved Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation. Component of intraflagellar transport complex B (Lechtreck et al. 2 g11068.t1,Cre10.g450350.t1.1,FAP232 - PTHR15928 - - - - - - - Cre11.g474750 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 12 - - g11796.t1 PF05637 - - - - GO:0016021,GO:0016758 - - - Cre12.g536550 DIC1,ODA9 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 12 Flagellar outer dynein arm intermediate chain 1 Flagellar outer dynein arm intermediate chain 1 (IC1, ODA-IC1, IC78). Previously annotated as ODA9 g13194.t1,Cre12.g536550.t1.1,ODA9 PF00400 PTHR12442,PTHR12442:SF11 KOG1587 - K10409 - AT4G35370.1 - Transducin/WD40 repeat-like superfamily protein Cre04.g232802 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 14 - - g5066.t1,Cre32.g781000.t1.1 PF00481 PTHR13832,PTHR13832:SF190 KOG0700 - - GO:0003824 AT3G62260.2 - Protein phosphatase 2C family protein Cre08.g376950 MMP14 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 Matrix metalloproteinase Matrix metalloproteinase belonging to the M11 peptidase family g8878.t1,MMP14 PF05548 - - - - - - - - Cre01.g049200 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 18 - - g1092.t1 PF00188 PTHR10334,PTHR10334:SF59 KOG3017 - - - AT2G19990.1 PR-1-LIKE pathogenesis-related protein-1-like Cre17.g707551 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g17142.t1 - - - - - - - - - Cre06.g285950 - 0 4 1.0 1.0 0 4 1.0 1.0 C n downregulated 14 - - g6646.t1,Cre06.g285950.t1.1 - - - - - - - - - Cre17.g738150 ERM10 - 0 17 1.0 1.0 0 17 1.0 1.0 O n - 13 ERD4-related membrane protein Transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration) g17855.t1,ERM10 PF02714 PTHR13018,PTHR13018:SF21 - - - GO:0016020 AT4G02900.1 - ERD (early-responsive to dehydration stress) family protein Cre02.g087100 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 11 - - g1616.t1,Cre02.g087100.t1.1 - - - - - - - - - Cre03.g170100 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 13 - - g3502.t1,Cre03.g170100.t1.1 PF09747 - KOG3044 - - - AT5G47090.1 - - Cre02.g144009 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g2601.t1 - - - - - - - - - Cre02.g144005 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g2597.t1 PF00657 - - - - GO:0006629,GO:0016788 AT1G20132.1 - GDSL-like Lipase/Acylhydrolase superfamily protein Cre02.g144006 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g2598.t1 - PTHR13890,PTHR13890:SF3 KOG2662 - - - AT1G16010.1 MGT2,MRS2-1 magnesium transporter 2 Cre02.g144002 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g2595.t1, g2595.t2 PF00849 PTHR10436 - - - GO:0001522,GO:0003723,GO:0009451,GO:0009982 AT1G56345.1 - Pseudouridine synthase family protein Cre09.g397142 TRP15 - 0 22 1.0 1.0 0 22 1.0 1.0 O n downregulated 16 Transient receptor potential ion channel protein Transient potential receptor channel g9856.t1,Cre02.g133950.t1.1,TRP15 PF00520 - - - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 - - - Cre13.g592550 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g14525.t1 - - - - - - - - - Cre13.g592551 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 9 - - g14526.t1,Cre13.g592551.t1.1 - - - - - - - - - Cre13.g607900 CPLD68 - 0 3 1.0 1.0 0 3 1.0 1.0 M Y - 5 - - g14654.t1 - - - - - - AT2G38780.1 - - Cre08.g371600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g8704.t1,Cre08.g371600.t1.1 - - - - - - - - - Cre03.g207350 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4162.t1, g4162.t2 - - - - - - - - - Cre03.g207351 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - - - - g4163.t1,Cre03.g207300.t1.3 PF10998 - KOG2895 - - - AT5G35460.1 - - Cre03.g193000 HAD5 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 - - g3993.t1,HAD5 PF00702 PTHR12725:SF4,PTHR12725 - - - GO:0003824,GO:0008152 AT2G33255.1 - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Cre11.g477700 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g11859.t1 - - - - - - - - - Cre04.g227050 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 18 - - g4970.t2, g4970.t1 - - - - - - - - - Cre03.g204913 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g4410.t1,Cre19.g753900.t1.1 PF07004 - - - - - - - - Cre17.g706200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g17115.t1,Cre17.g706200.t1.1 PF02932 PTHR18945,PTHR18945:SF136 - - - GO:0006811,GO:0016021,GO:0016020 - - - Cre08.g359650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 5 - - g8424.t1,Cre08.g359650.t1.1 - - - - - - - - - Cre12.g533000 PHR2 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - - CPD photolyase, class II CPD photolyase type II (Deoxyribodipyrimidine photolyase class 2). Was formerly assigned PHR1, but this is not correct (communication with Jason Petersen) g13113.t1,Cre12.g533000.t1.1,PHR2 PF03441,PF00875 PTHR10211 KOG0133 4.1.99.3 K01669 GO:0003904,GO:0006281,GO:0003913 AT1G12370.2 PHR1,UVR2 photolyase 1 Cre02.g088300 CPK6 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g1644.t1,CPK6 PF00294 PTHR10584:SF21,PTHR10584 - - - - - - - Cre12.g485250 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 - - g12041.t1 - - - - - - - - - Cre16.g673953 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase); localization unsure [PMID: 15701785]; this is the minor splicing variant FKB16-7b, with the sequence vdktgrppppslprllprhs added in loop between 5th and 6th beta-strand g16716.t1,Cre01.g065700.t1.1 PF00254 PTHR10516,PTHR10516:SF108 - - - GO:0006457 - - - Cre15.g635600 NPC1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g15332.t1,Cre15.g635600.t1.1,NPC1 PF01849,PF00627 PTHR21713 KOG2239 - K03626 GO:0005515 AT3G49470.1 NACA2 nascent polypeptide-associated complex subunit alpha-like protein 2 Cre17.g734100 - 0 1 1.0 nan 0 1 1.0 nan C n - 2 - - g17746.t1,Cre17.g734100.t1.1 PF00709 PTHR11846 KOG1355 6.3.4.4 K01939 GO:0000287,GO:0004019,GO:0005525,GO:0005737,GO:0006164 AT3G57610.1 ADSS adenylosuccinate synthase Cre16.g679500 NUOB8 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 NADH:ubiquinone oxidoreductase 11 kDa subunit NADH:ubiquinone oxidoreductase (Complex I) B8 subunit, mitochondrial; [=NDUFA2 subunit]; gi|34328790|gb|AAQ63699.1| [PMID: 15450959; PMID: 15710684] g16520.t1,Cre16.g679500.t1.1 PF05047 PTHR12878 KOG3446 1.6.5.3,1.6.99.3 K03946 - AT5G47890.1 - NADH-ubiquinone oxidoreductase B8 subunit, putative Cre03.g173450 PAO4 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 6 - - g3577.t1,PAO4 PF00355 PTHR21266,PTHR21266:SF3 - - - GO:0016491,GO:0051537,GO:0055114 AT4G25650.1 ACD1-LIKE,PTC52,TIC55-IV ACD1-like Cre12.g507909 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g12398.t1,Cre12.g507909.t1.1 - - - - - - - - - Cre12.g507900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 15 - - g12399.t1 - - - - - - - - - Cre07.g325450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g7517.t1 PF06966 - KOG4650 - - - AT2G46890.1 - Protein of unknown function (DUF1295) Cre06.g256350 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g5760.t1,Cre06.g256350.t1.1 PF01011 - - - - - - - - Cre09.g412550 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 13 - - g10213.t1, g10213.t2 PF03407 - - - - - - - - Cre02.g095093 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g1867.t1,Cre11.g472200.t1.1,Cre11.g472200.t1.2 PF05160 PTHR16771 KOG4764 - - - - - - Cre09.g393247 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g9749.t1 - - - - - - - - - Cre10.g419900 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g10392.t1, g10392.t2 - - - - - - - - - Cre02.g104350 PDI5 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 Protein disulfide isomerase Protein Disulfide Isomerase 5. Unusual active site sequence, WCHWC instead of WCGHC; PMID: 16143836 g2135.t1,PDI5, g2135.t2,Cre02.g104350.t1.1,PDI5 PF07970,PF00085 PTHR10984:SF2,PTHR10984 KOG2667 - - GO:0045454 AT4G27080.1 ATPDI7,ATPDIL5-4,PDI7,PDIL5-4 PDI-like 5-4 Cre01.g018550 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - - - - g437.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre02.g095090 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g1864.t1,Cre11.g472050.t1.1 PF08241,PF05175 PTHR10108,PTHR10108:SF53 - - - GO:0008152,GO:0008168 AT2G43940.1 ATHOL3,HOL3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre17.g698266 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g16934.t1 PF01230 PTHR23089 KOG3379 3.6.1.29 K01522 - AT5G58240.1 FHIT FRAGILE HISTIDINE TRIAD Cre06.g262550 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 8 - - g5898.t1,Cre06.g262550.t1.1 PF01753 PTHR13244 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre03.g174150 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 8 - - g3593.t1 PF00651 PTHR26379,PTHR26379:SF178 - - K10481 GO:0005515 AT5G19330.1 ARIA ARM repeat protein interacting with ABF2 Cre16.g681200 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g16482.t1,Cre16.g681200.t1.1 - - - - - - - - - Cre12.g541200 - 0 1 1.0 nan 0 1 1.0 nan SP n - 3 - - g13752.t1,Cre12.g541200.t1.1 PF01226 - - - - GO:0005215,GO:0006810,GO:0016020 - - - Cre07.g321200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 5 - - g7425.t1,Cre07.g321200.t1.1, g7425.t2 - PTHR13271 - - - - AT1G01920.2 - SET domain-containing protein Cre06.g296800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 9 - - g6863.t1 - - - - - - - - - Cre01.g032550 CGL127 - 0 10 1.0 1.0 0 10 1.0 1.0 C Y - 11 - - g736.t1 - PTHR12663 - - - - AT1G77600.2 - ARM repeat superfamily protein Cre14.g630400 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g15182.t1,Cre14.g630400.t1.1 PF00248 PTHR11732:SF8,PTHR11732 KOG1576 1.1.1.122 K00064 GO:0016491,GO:0055114 AT4G33670.1 - NAD(P)-linked oxidoreductase superfamily protein Cre12.g520950 BOP5,DIC4,IC138 - 0 7 1.0 1.0 0 7 1.0 1.0 O n downregulated 13 Flagellar inner dynein arm I1 intermediate chain IC138 Axonemal inner arm I1 intermediate chain dynein IC138. IC138 is a WD-repeat dynein intermediate chain required for light chain assembly and regulation of flagellar bending [PMID: 15469982, PMID: 19420135] protein_id=AAU93505. Previously annotated as BOP5. g12835.t1,BOP5,IC138 PF00400 PTHR12442:SF12,PTHR12442 KOG1332 - - - AT1G79990.3 - structural molecules Cre12.g489900 CYG54 - 0 13 1.0 1.0 0 13 1.0 1.0 SP n - 18 Adenylate/guanylate cyclase Protein with domain similar to isoform A [Drosophila melanogaster] g12187.t1 PF00211 PTHR11920,PTHR11920:SF114 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre16.g651900 CRTISO,CRI1 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 6 Carotenoid isomerase Carotenoid isomerase (carotene isomerase), putative chloroplast precursor; (crtH) (CIS); similarly named as Arabidopsis enzyme. Previously annotated CRTISO g15767.t1,CRI1,CRTISO - - - - - - - - - Cre06.g294400 NIS1 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 Nicastrin Transmembrane glycoprotein, forms the gamma-secretase complex with presenilin, aph-1 and pen-2; involved in regulated intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch g6815.t1,NIS1 PF05450 PTHR21092 KOG2657 - K06171 GO:0016021,GO:0016485 AT3G52640.1 - Zn-dependent exopeptidases superfamily protein Cre15.g634950 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 18 - - g15313.t1 - - - - - - - - - Cre06.g280350 - 0 10 1.0 1.0 0 10 1.0 1.0 O n downregulated 13 - - g6520.t1,Cre06.g280350.t1.1 PF00400 PTHR22844 KOG0645 - - - AT3G18140.1 - Transducin/WD40 repeat-like superfamily protein Cre03.g144284 - 0 1 1.0 nan 0 1 1.0 nan O Y - - - - g2878.t1 PF00651 PTHR24413 - - - GO:0005515 AT3G06190.1 ATBPM2,BPM2 BTB-POZ and MATH domain 2 Cre12.g488050 FFT5 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g12226.t1,Cre12.g488050.t1.1,FFT5 PF00251 - - - - - AT2G36190.1 AtcwINV4,cwINV4 cell wall invertase 4 Cre02.g093850 - 0 26 1.0 1.0 0 26 1.0 1.0 M n - 16 - - g1773.t1 PF00560 PTHR26343:SF50,PTHR26343 KOG0472 - - GO:0005515 AT3G15410.2 - Leucine-rich repeat (LRR) family protein Cre05.g232800 SRX1 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 Sulfiredoxin Related to sulfiredoxin, contains ParB-like nuclease domain (see PMID: 15917647 for relationship to ParB) g5118.t1,SRX1 PF02195 PTHR21348 KOG3388 1.8.98.2 K12260 GO:0003677 AT1G31170.1 ATSRX,SRX sulfiredoxin Cre09.g413600 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 10 - - g10246.t1 - - - - - - - - - Cre05.g238322 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g5491.t1,Cre56.g791100.t1.1,Cre56.g791100.t1.2 PF00579 PTHR10055 KOG2713 6.1.1.2 K01867 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418,GO:0004830,GO:0006436 AT2G25840.2 OVA4 Nucleotidylyl transferase superfamily protein Cre12.g508150 SRH21 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g12393.t1,Cre12.g508150.t1.1,SRH21 PF00271,PF09111,PF00176,PF09110 PTHR10799,PTHR10799:SF73 KOG0385 3.6.4.- K11654 GO:0003676,GO:0004386,GO:0005524,GO:0005634,GO:0006338,GO:0016818,GO:0003677,GO:0016585,GO:0031491,GO:0043044 AT3G06400.3 CHR11 chromatin-remodeling protein 11 Cre01.g019200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g450.t1 PF05997 PTHR13026 - - - GO:0006364,GO:0030688 AT5G20600.1 - - Cre07.g318350 CGL64 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 16 Predicted protein Conserved expressed protein g7359.t1,Cre07.g318350.t1.1 PF12576 - - - - - AT5G13940.1 - aminopeptidases Cre09.g405200 MRPL13 - 0 1 1.0 nan 0 1 1.0 nan O n - - Mitochondrial ribosomal protein L13 Putative mitochondrial ribosomal protein L13, imported to mitochondria g10049.t1,Cre09.g405200.t1.1 PF00572 PTHR11545 KOG3203 - K02871 GO:0003735,GO:0005840,GO:0006412 AT3G01790.1 - Ribosomal protein L13 family protein Cre16.g654992 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g15833.t1 PF05206,PF05253,PF11722 PTHR12998 KOG2811 - - GO:0008033,GO:0008168 AT4G01880.1 - methyltransferases Cre02.g095450 FKB16-6,FKB9 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase); probably directed to thylakoid lumen (homology to AtFKBP16-1 and bipartite cTP: 51 + RR motif); [PMID: 15701785] g1938.t1,Cre02.g095450.t1.1,FKB9 PF00254 PTHR10516,PTHR10516:SF119 - - - GO:0006457 AT4G26555.1 - FKBP-like peptidyl-prolyl cis-trans isomerase family protein Cre13.g586350 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 6 - - g14388.t1 PF00561,PF00875 PTHR10992,PTHR10992:SF20 KOG1454 - - GO:0003913,GO:0006281 AT4G25290.1 - DNA photolyases;DNA photolyases Cre03.g200767 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g4373.t1,Cre19.g752250.t1.1 - PTHR10605,PTHR10605:SF3 - - - - - - - Cre16.g680550 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g16497.t1,Cre16.g680550.t1.1 - - - - - - - - - Cre02.g083100 PRL1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 Predicted extracellular protein Similar to pathogenesis-related protein 1, extracellular g1528.t1,Cre02.g083100.t1.1,PRL1 PF00188 PTHR10334 KOG3017 - - - AT5G57625.1 - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Cre17.g700200 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 - - g16982.t1,Cre17.g700200.t1.1 - - - - - - - - - Cre03.g145227 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2925.t1,Cre01.g058650.t1.1 PF04652 PTHR12741 KOG0917 - K12199 - AT4G26750.1 - hydroxyproline-rich glycoprotein family protein Cre07.g348040 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8099.t1 PF00324 PTHR11785,PTHR11785:SF13 KOG1289 - - GO:0006810,GO:0016020,GO:0055085,GO:0003333,GO:0015171 AT2G01170.1 BAT1 bidirectional amino acid transporter 1 Cre13.g606350 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g14621.t1, g14621.t2 - - - - - - AT4G00800.1 - transducin family protein / WD-40 repeat family protein Cre01.g001678 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 16 - - g40.t1,Cre58.g791550.t2.1, g40.t2,Cre58.g791550.t1.1 PF00069 PTHR23257:SF367,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre01.g033200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 6 - - g750.t1,Cre01.g033200.t1.1 - - - - - - - - - Cre02.g112750 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 18 - - g2322.t1,Cre02.g112750.t1.1 PF03110 - KOG0956 - - GO:0003677,GO:0005634 AT2G42200.1 SPL9 squamosa promoter binding protein-like 9 Cre07.g316600 MKP5 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - Dual-specificity protein phosphatase Dual-specificity protein phosphatase, contains FHA domain. Previously annotated as MKP5 g7320.t1,Cre07.g316600.t1.1,MKP5 PF00782,PF00498 PTHR10159:SF129,PTHR10159 KOG1716 3.1.3.16,3.1.3.48 K04459 GO:0006470,GO:0008138,GO:0005515 AT3G23610.1 DSPTP1 dual specificity protein phosphatase 1 Cre06.g267250 MKP2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 Dual-specificity protein phosphatase Dual-specificity protein phosphatase. Previously annotated as MKP2 g5997.t1,MKP2 PF00782 PTHR10159 KOG1716 - K05766 GO:0006470,GO:0008138 AT3G23610.3 DSPTP1 dual specificity protein phosphatase 1 Cre06.g277801 DNL4 - 0 15 1.0 1.0 0 15 1.0 1.0 O n - 16 - - g6225.t1,Cre06.g277800.t1.3 PF01068,PF04675 PTHR10459:SF7,PTHR10459 - - - GO:0003910,GO:0005524,GO:0006281,GO:0006310,GO:0003677 AT5G57160.1 ATLIG4,LIG4 DNA ligase IV Cre08.g384900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g9058.t1,Cre08.g384900.t1.1 PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT5G11850.1 - Protein kinase superfamily protein Cre06.g289650 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g6721.t1,Cre06.g289650.t1.1 - - - - - - - - - Cre13.g584850 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g14356.t1 PF02798,PF00043 PTHR11260,PTHR11260:SF76 KOG0867 - - GO:0005515 AT2G30870.1 ATGSTF10,ATGSTF4,ERD13,GSTF10 glutathione S-transferase PHI 10 Cre05.g240150 UBC16 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5538.t1,Cre05.g240150.t1.1,UBC16 PF00179 PTHR24067:SF25,PTHR24067 KOG0417 6.3.2.19 K10689 GO:0016881 AT5G25760.1 PEX4,UBC21 peroxin4 Cre06.g281400 NAH1 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 13 Cation antiporter Similar to Na(+)/H(+) antiporter [Saccharomyces cerevisiae] g6545.t1,NAH1 PF00999 - KOG4505 - - GO:0006812,GO:0015299,GO:0016021,GO:0055085 - - - Cre11.g468075 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g11743.t2, g11743.t1 - - - - - - - - - Cre07.g328200 PSBP6 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 4 Lumen targeted protein Conserved expressed lumen targeted protein; shows similarity to PSBP (OEE2, oxygen-evolving enhancer protein 2 of photosystem II, OEC23, 23 kDa subunit of oxygen evolving complex [PMID: 3468511]; orthologous to At5g11450; targeted to thylakoid lumen by TA g7634.t1,Cre07.g328200.t1.1 - - - - - - AT5G11450.1 - Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein Cre06.g273650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g6139.t1,Cre06.g273650.t1.1 PF05042 - - - - - AT2G33380.1 CLO-3,RD20 Caleosin-related family protein Cre17.g725100 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 7 - - g17535.t1,Cre17.g725100.t1.1 PF01751,PF01131 PTHR11390 KOG1957 5.99.1.2 K03165 GO:0003677,GO:0003916,GO:0005694,GO:0006265,GO:0003917 AT2G32000.1 - DNA topoisomerase, type IA, core Cre13.g607750 FAP250,DRC2 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation g14651.t1,Cre13.g607750.t1.1,FAP250 - PTHR21625 - - - - - - - Cre14.g627726 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g15120.t1 - - - - - - - - - Cre11.g478626 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g11882.t1 - - - - - - - - - Cre10.g448500 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11027.t1 PF00857 PTHR11080,PTHR11080:SF3 KOG4003 - - GO:0003824,GO:0008152 AT3G16190.1 - Isochorismatase family protein Cre16.g683200 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 - - g16438.t1,Cre16.g683200.t1.1 - - - - - - - - - Cre02.g080450 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g1470.t1,Cre02.g080450.t1.1 - - - - - - - - - Cre17.g719771 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g17418.t1 PF12576 - - - - - AT2G46915.1 - Protein of unknown function (DUF3754) Cre12.g500450 TPD1 - 0 11 1.0 1.0 0 11 1.0 1.0 M n upregulated 5 - - g12567.t1,TPD1 PF03372 PTHR12121,PTHR12121:SF18 KOG0620 - - - AT3G58580.1 - DNAse I-like superfamily protein Cre10.g434950 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g10726.t1,Cre10.g434950.t1.1 - - - - - - - - - Cre13.g591050 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 18 - - g14494.t1,Cre13.g591050.t1.1 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre09.g411876 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g10197.t1 - - - - - - - - - Cre08.g359400 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g8418.t1,Cre08.g359400.t1.1 - - - - - - - - - Cre01.g005600 FDX8 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 - - g136.t1,Cre01.g005650.t1.2,FDX8 PF00111 - - - - GO:0009055,GO:0051536 - - - Cre12.g533250 - 0 11 1.0 1.0 0 11 1.0 1.0 M n - - - - g13118.t1 PF00443 PTHR24006,PTHR24006:SF52 - - - GO:0004221,GO:0006511 AT1G04860.1 ATUBP2,UBP2 ubiquitin-specific protease 2 Cre01.g002650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g63.t1,Cre01.g002650.t1.1 - - - - - - - - - Cre17.g745947 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g18035.t1,Cre20.g759050.t1.1 - - - - - - - - - Cre03.g153076 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g3117.t1 - - - - - - - - - Cre09.g390282 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g9664.t1,Cre02.g125600.t1.1 PF07851 PTHR21433 KOG4758 - - GO:0016021 AT1G33230.1 - TMPIT-like protein Cre03.g146287 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g2979.t1,Cre01.g061200.t1.1,Cre01.g061200.t1.2 - PTHR24782:SF30,PTHR24782 - - - - - - - Cre07.g351150 FA2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 Flagellar Autonomy Protein, NIMA family kinase Flagellar Autonomy 2 protein, NIMA family kinase; PMID: 11950892. Associated with flagellar shortening and detachment, and in the G2/M transition of the cell cycle g8171.t1,Cre07.g351150.t1.1 PF00069 PTHR24362,PTHR24362:SF98 KOG0591 - - GO:0004672,GO:0005524,GO:0006468 AT3G20860.1 ATNEK5,NEK5 NIMA-related kinase 5 Cre06.g264700 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g5946.t1,Cre06.g264700.t1.1 - - - - - - - - - Cre07.g325200 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g7512.t1,Cre07.g325200.t1.1 - - - - - - - - - Cre09.g396735 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 15 - - g9844.t1,Cre02.g133450.t1.1,Cre02.g133450.t1.2, g9844.t2,Cre02.g133450.t2.1 PF06325 PTHR18895:SF3,PTHR18895 - - - GO:0005737,GO:0006479,GO:0008276 AT5G53920.1 - ribosomal protein L11 methyltransferase-related Cre07.g329550 VFL5 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g7666.t1,VFL5 - - - - - - - - - Cre16.g658650 MYO1 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 Myosin heavy chain, class XI - g15911.t1,MYO1 PF00612,PF00063,PF02736,PF01843 PTHR13140,PTHR13140:SF36 KOG0160 - - GO:0005515,GO:0003774,GO:0005524,GO:0016459 AT1G54560.1 ATXIE,XIE Myosin family protein with Dil domain Cre14.g632050 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 11 - - g15231.t1,Cre14.g632050.t1.1 PF11618 PTHR14240 KOG0027 - - - AT2G41100.1 ATCAL4,TCH3 Calcium-binding EF hand family protein Cre09.g401515 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 - - g9993.t1,Cre02.g139200.t1.1 - - - - - - AT1G15140.1 - FAD/NAD(P)-binding oxidoreductase Cre01.g052950 PSO2 - 0 1 1.0 nan 0 1 1.0 nan O Y - 10 Artemis-related DNA-crosslink repair exonuclease Homolog of SNM1 (SENSITIVE TO NITROGEN MUSTARD 1); phosphorylated Artemis associates with DNA-PKcs and Ku to cleave DNA hairpins at double-strand breaks; lacks the additional DNA ligase I domain found in some higher plant PSO2 proteins like Arabidopsis NP g1170.t1 - PTHR23240 - - - - AT1G19025.1 - DNA repair metallo-beta-lactamase family protein Cre09.g390750 ELG24 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 9 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g9477.t1,ELG24 PF03016,PF07974 PTHR11062,PTHR11062:SF17 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre12.g550150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g13545.t1 - - - - - - - - - Cre12.g550153 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g13547.t1,Cre12.g550050.t1.2 - - - - - - - - - Cre01.g054500 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 11 - - g1203.t1,Cre01.g054500.t1.1 PF02233,PF05222,PF01262 PTHR10160,PTHR10160:SF14 - 1.6.1.2 K00323 GO:0008746,GO:0055114,GO:0016491 - - - Cre01.g051750 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 14 - - g1147.t1, g1147.t2 - PTHR14155:SF10,PTHR14155 - - - - - - - Cre02.g111050 AMT7 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 17 Ammonium transporter Belongs to AMT1 family (Amt1;7 or Amt1:7); two different splicing variants have been found for this gene, this one is AMT7.a (Amt1;7a), the longest one (AY588244); was AMT1G.a; belongs to AMT1 family (Amt1;7 or Amt1.7); two different splicing variants hav g2282.t1,AMT7 PF00909 PTHR11730:SF12,PTHR11730 KOG0682 - - GO:0008519,GO:0016020,GO:0072488 AT3G24300.1 AMT1;3,ATAMT1;3 ammonium transporter 1;3 Cre07.g331800 CGL79,CPK1 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 5 Carbohydrate/purine kinase Carbohydrate/purine kinase. Green-lineage conserved protein. Previously annotated as CGL79. Probably an adenosine kinase g7719.t1,Cre07.g331800.t1.1,CPK1 PF00294 PTHR10584,PTHR10584:SF26 KOG2854 - - - AT1G19600.1 - pfkB-like carbohydrate kinase family protein Cre06.g259550 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n upregulated 17 - - g5835.t1,Cre06.g259550.t1.1 PF00004 PTHR23074 - - - GO:0005524 AT1G02890.1 - AAA-type ATPase family protein Cre01.g027600 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g631.t1 - - - - - - - - - Cre02.g119700 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g2486.t1 PF02449 - - - - GO:0004565,GO:0005975,GO:0009341 - - - Cre10.g454900 PDE29 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11165.t1,Cre10.g454900.t1.1,PDE29 PF00233 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre01.g004550 FAP190 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g111.t1,Cre01.g004550.t1.1 PF00536 PTHR12587 KOG4375 - - - - - - Cre01.g055457 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g1236.t2,Cre23.g767950.t1.1, g1236.t1,Cre23.g767950.t2.1 PF00069 PTHR24347,PTHR24347:SF65 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT4G04740.2 ATCPK23,CPK23 calcium-dependent protein kinase 23 Cre02.g085750 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 18 - - g1587.t1 PF01547 PTHR11017 - - - GO:0005215,GO:0006810 - - - Cre01.g010201 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g256.t1 - - KOG2992 - - - - - - Cre12.g555650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g13419.t1 PF03407 - - - - - AT1G28695.1 - Nucleotide-diphospho-sugar transferase family protein Cre01.g011550 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 - - g288.t1 - - - - - - - - - Cre17.g729950 SRX1 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 2 - - g17641.t1,Cre17.g729950.t1.1,SRX1 PF02195 PTHR21348 KOG3388 - - GO:0003677 AT1G31170.1 ATSRX,SRX sulfiredoxin Cre10.g447850 YEE2 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 11 Integral membrane protein Contains 2 DUF395 domains, found in YeeE and YedE from Escherichia coli. These proteins are integral membrane proteins of unknown function. Many of these proteins contain two homologous regions that are represented by this entry. This region contains seve g11014.t1,Cre10.g447850.t1.1,YEE2 PF04143 - - - - - - - - Cre17.g744497 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g18006.t1,Cre20.g760200.t1.1,Cre20.g760200.t1.2 PF09783 PTHR14534,PTHR14534:SF5 KOG4635 - - - AT2G37680.1 - - Cre10.g446100 TRXy,TRX6 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 Chloroplastic thioredoxin y Thioredoxin y chloroplast precursor, initially identified in Chlamydomonas [PMID: 12753911]; chloroplastic localization confirmed experimentally in Arabidopsis [PMID: 15531707] . TRX y could be involved in oxidative stress responses as it is the most effi g10976.t1,Cre10.g446100.t1.1,TRX6 PF00085 PTHR10438 KOG0910 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT1G76760.1 ATY1,TRX-Y1,TY1 thioredoxin Y1 Cre09.g395950 AOX1 - 0 7 1.0 1.0 0 7 1.0 1.0 M n downregulated 9 Alternative oxidase Alternative oxidase, mitochondrial precursor see gi|9027543|gb|AAC05743.2|[9027543], [PMID: 11405094] g9370.t1,Cre09.g395950.t1.1,AOX1 PF01786 - - - - GO:0005740,GO:0007585,GO:0055114 AT1G32350.1 AOX1D alternative oxidase 1D Cre01.g009601 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g242.t2, g242.t1 - - - - - - - - - Cre12.g508900 MAPK6 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 Mitogen-Activated Protein Kinase Downstream kinase in the canonical MAP kinase pathway g12374.t1,Cre12.g508900.t1.1,MAPK6 PF00069 PTHR24058,PTHR24058:SF69 KOG0660 2.7.11.24 K08293 GO:0004672,GO:0005524,GO:0006468 AT4G01370.1 ATMPK4,MPK4 MAP kinase 4 Cre10.g464264 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g11376.t1,Cre10.g464264.t1.1 PF00583 - - - - GO:0008080,GO:0008152 AT4G19985.1 - Acyl-CoA N-acyltransferases (NAT) superfamily protein Cre09.g397882 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 18 - - g9876.t1,Cre02.g134950.t1.1 - - - - - - - - - Cre01.g038200 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g855.t1,Cre01.g038200.t1.1 - - - - - - - - - Cre11.g467664 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 7 - - g11594.t1,Cre18.g745700.t1.1,Cre18.g745700.t1.2, g11594.t2,Cre18.g745700.t2.1 - - - - - - - - - Cre11.g467667 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g11597.t1,Cre18.g745550.t1.1, g11597.t2,Cre18.g745550.t2.1 - - - - - - - - - Cre11.g467666 LCI13 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - Low-CO2-inducible protein Low-CO2 inducible gene revealed by cDNA array analyses. Similar to KDEL (Lys-Asp-Glu-Leu) containing protein in many species, but LCI13 dose not contain KEDL motif, but CAP10, putative lipopolysaccharide-modifying enzyme (smart00672); regulated by CCM1 [P g11596.t1,Cre18.g745600.t1.1,Cre18.g745600.t1.2,LCI13 PF05686 PTHR12203 - - - - AT3G61280.1 - Arabidopsis thaliana protein of unknown function (DUF821) Cre13.g569250 CGLD9 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 14 Predicted protein Conserved expressed protein; presence of a homolog in Guillardia theta and Anabaena suggests plastid localization g14006.t1,Cre13.g569250.t1.1 PF11255 - - - - - AT1G44920.1 - - Cre11.g467669 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 17 - - g11599.t1,Cre18.g745450.t1.1 - PTHR24106 - - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre16.g656433 TNP41 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g15866.t1,Cre16.g656450.t1.2,TNP41 PF07282 - - - - - - - - Cre03.g183650 GDP4,GDPD4 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 Glycerophosphoryl diester phosphodiesterase family protein Glycerophosphoryl diester phosphodiesterase family protein. Previously annotated as GDPD4 g3806.t1,GDP4,GDPD4 PF03009 PTHR23344 - - - GO:0006071,GO:0008889 AT5G08030.1 - PLC-like phosphodiesterases superfamily protein Cre02.g112500 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 8 - - g2317.t1 PF00069 PTHR24349:SF125,PTHR24349 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT1G50240.2 FU Protein kinase family protein with ARM repeat domain Cre10.g433100 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 1 - - g10685.t1,Cre10.g433100.t1.1 PF01926,PF09269,PF01018 PTHR11702:SF3,PTHR11702 KOG1489 - - GO:0000287,GO:0003924,GO:0005525,GO:0005622,GO:0000166 AT5G18570.1 ATOBGC,CPSAR1,EMB269 GTP1/OBG family protein Cre13.g566550 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 - - g13941.t1 - - - - - - - - - Cre09.g392430 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g9724.t1,Cre02.g128150.t1.1,Cre02.g128150.t1.2 PF00106 PTHR24316:SF38,PTHR24316 KOG1205 - - GO:0008152,GO:0016491 AT1G24470.1 ATKCR2,KCR2 beta-ketoacyl reductase 2 Cre16.g695550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g15557.t1 - - - - - - - - - Cre07.g337400 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g7850.t1,Cre07.g337400.t1.1 - - - - - - - - - Cre12.g522900 LYR4 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g12877.t1,Cre12.g522900.t1.1,LYR4 PF05347 PTHR13166 - - - - - - - Cre07.g332650 NCT1 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 9 - - g7738.t1,NCT1 PF07690 PTHR24979:SF3,PTHR24979 - - - GO:0016021,GO:0055085 AT5G20380.1 PHT4;5 phosphate transporter 4;5 Cre04.g228700 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g5005.t1 - - - - - - - - - Cre03.g184151 NAT9 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g3816.t1,Cre03.g184150.t1.2,NAT9 PF00583 PTHR13256 - - - GO:0008080,GO:0008152 AT2G04845.1 - Acyl-CoA N-acyltransferases (NAT) superfamily protein Cre07.g356900 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 17 - - g8296.t1,Cre07.g356900.t1.1 - - - - - - - - - Cre08.g361250 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g8459.t1 - - - - - - - - - Cre06.g252576 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g5655.t1 - - - - - - - - - Cre10.g441450 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g10863.t1,Cre10.g441450.t1.1 PF05178 PTHR14490 KOG2409 - - - AT3G24080.1 - KRR1 family protein Cre06.g256650 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 8 - - g5768.t1, g5768.t2 - PTHR10887 - - - - - - - Cre10.g440500 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 11 - - g10842.t1, g10842.t2 PF00533 - - - - GO:0005622 - - - Cre14.g614800 - 0 1 1.0 nan 0 1 1.0 nan C n - 5 - - g14813.t1,Cre14.g614800.t1.1 - - - - - - - - - Cre06.g260700 UAPA6,XUV1 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - Xanthine/uracil/vitamin C permease-like Xanthine/uracil/vitamin C permease-like. Related to plants and fungi; also related to bacterial inner membrane proteins g5858.t1,Cre06.g260700.t1.1,XUV1 PF00860 PTHR11119,PTHR11119:SF9 - - K06901 GO:0005215,GO:0006810,GO:0016020,GO:0055085 AT3G10960.1 ATAZG1,AZG1 AZA-guanine resistant1 Cre06.g251000 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g5622.t1,Cre06.g251000.t1.1 - - - - - - - - - Cre01.g058886 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g1253.t1,Cre23.g767300.t1.1,Cre23.g767300.t1.2 PF01926,PF02824 PTHR11702,PTHR11702:SF7 KOG1486 - - GO:0005525,GO:0005622 AT1G72660.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre03.g153850 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 16 - - g3134.t1,Cre03.g153850.t1.1 PF03330 - - - - - AT5G05290.1 ATEXP2,ATEXPA2,ATHEXP ALPHA 1.12,EXP2,EXPA2 expansin A2 Cre02.g106100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g2175.t1,Cre02.g106100.t1.1 PF00561 PTHR10992,PTHR10992:SF209 KOG1454 - - - - - - Cre02.g096150 MSD1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Mn superoxide dismutase Superoxide dismutase [Mn], mitochondrial precursor; the name MSD1 replaces the previous designation SodA. g1952.t1,Cre02.g096150.t1.1 PF02777,PF00081 PTHR11404,PTHR11404:SF9 KOG0876 - - GO:0004784,GO:0006801,GO:0046872,GO:0055114 AT3G10920.1 ATMSD1,MEE33,MSD1 manganese superoxide dismutase 1 Cre01.g002400 TGL1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g58.t1,TGL1 PF01764 PTHR21493:SF9,PTHR21493 - - - GO:0004806,GO:0006629 AT4G13550.1 - triglyceride lipases;triglyceride lipases Cre15.g640901 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g15331.t1 - - - - - - - - - Cre15.g640900 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 9 - - g15330.t1,Cre15.g640900.t1.1 - - - - - - - - - Cre13.g564950 EFG13 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 1 - - g13899.t1,Cre13.g564950.t1.1,EFG13 PF03144,PF00679,PF00009 PTHR23115,PTHR23115:SF3 KOG0467 - - GO:0005525,GO:0003924 AT3G22980.1 - Ribosomal protein S5/Elongation factor G/III/V family protein Cre05.g245800 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g5219.t1,Cre05.g245800.t1.1 - - - - - - - - - Cre07.g335000 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 13 - - g7800.t1, g7800.t2 - - - - - - - - - Cre09.g398289 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 - - g9888.t1,Cre02.g135450.t1.1,Cre02.g135450.t1.2 PF01553 PTHR10434 KOG2848 2.3.1.51 K00655 GO:0008152,GO:0008415 AT4G30580.1 ATS2,EMB1995,LPAT1 Phospholipid/glycerol acyltransferase family protein Cre12.g557650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g13377.t1 - - - - - - - - - Cre01.g023600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g544.t1,Cre01.g023600.t1.1 PF01370 PTHR10366,PTHR10366:SF9 - - - GO:0003824,GO:0044237,GO:0050662 AT1G51410.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre07.g351300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g8173.t1,Cre07.g351300.t1.1 PF03129 PTHR11451 - - - GO:0004812,GO:0005524,GO:0006412 AT5G52520.1 OVA6,PRORS1 Class II aaRS and biotin synthetases superfamily protein Cre01.g049650 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g1101.t1 PF00225 PTHR24115:SF261,PTHR24115 - - - GO:0003777,GO:0005524,GO:0007018 AT1G12430.2 ARK3,PAK armadillo repeat kinesin 3 Cre03.g150500 SNE10 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g3061.t1,Cre03.g150500.t1.1,SNE10 PF01370 PTHR10366,PTHR10366:SF167 - - - GO:0003824,GO:0044237,GO:0050662 AT4G33360.3 FLDH NAD(P)-binding Rossmann-fold superfamily protein Cre17.g712450 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 10 - - g17252.t1 PF08585 PTHR14790:SF1,PTHR14790 - - - - AT5G63540.1 ATRMI1,BLAP75,RMI1 Domain of unknown function (DUF1767) Cre04.g212650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g4725.t1,Cre04.g212650.t1.1 PF03029 PTHR21231:SF4,PTHR21231 KOG1534 - K06883 GO:0000166 AT4G12790.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre09.g391370 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g9465.t1,Cre09.g391370.t1.1 - - - - - - - - - Cre14.g629400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 2 - - g15158.t1 - PTHR13413 - - - - AT5G62760.3 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre17.g742650 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g17960.t1 - - KOG3263 - - - - - - Cre02.g107800 CNK9 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 15 NimA-related protein kinase Contains a NIMA (never-in-mitosis) kinase domain and a C-terminal region with no database similarity except in Volvox g2210.t1,CNK9 PF00069 PTHR26266:SF145,PTHR26266 KOG0591 2.7.11.1 K08857 GO:0004672,GO:0005524,GO:0006468 AT3G04810.1 ATNEK2,NEK2 NIMA-related kinase 2 Cre02.g102900 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 15 - - g2102.t1 PF00069 PTHR23257:SF360,PTHR23257 KOG1187 - - GO:0004672,GO:0005524,GO:0006468 AT4G35780.1 - ACT-like protein tyrosine kinase family protein Cre11.g480000 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g11914.t1,Cre11.g480000.t1.1 PF02845 - - - - GO:0005515 AT5G32440.3 - Ubiquitin system component Cue protein Cre06.g254650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g5728.t1,Cre06.g254650.t1.1 PF00642 PTHR12930 KOG1813 - K13127 GO:0003676,GO:0008270 AT1G01350.1 - Zinc finger (CCCH-type/C3HC4-type RING finger) family protein Cre06.g249200 ARP4 - 0 1 1.0 nan 0 1 1.0 nan O n - - Actin-related protein, putative SWR-C component ChromDB ARP3401; similar to the Arabidopsis ARP4 protein which is localized predominantly to the nucleus during interphase; may be involved in chromatin remodeling as part of the SWR-C complex (see PMID: 14690608) g5582.t1,Cre06.g249200.t1.1,ARP4 PF00022 PTHR11937,PTHR11937:SF32 - - - - AT1G18450.1 ARP4,ATARP4 actin-related protein 4 Cre03.g156900 LHCBM5 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 Chlorophyll a/b binding protein of LHCII Chlorophyll a-b binding protein of LHCII g3203.t1,Cre03.g156900.t1.1 PF00504 PTHR21649 - - - GO:0009765,GO:0016020 AT2G05070.1 LHCB2,LHCB2.2 photosystem II light harvesting complex gene 2.2 Cre10.g420050 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g10395.t1 - - - - - - - - - Cre08.g375050 FAP86 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 15 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g8837.t1,Cre08.g375050.t1.1 - - - - - - - - - Cre09.g401256 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 8 - - g9986.t1,Cre02.g138900.t1.1,Cre02.g138900.t1.2 - - - - - - - - - Cre09.g406200 TSO1,PRORS1 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Prolyl-tRNA synthetase Prolyl-tRNA synthetase. Organellar class II (G, H, P and S) aminoacyl tRNA synthetase. Previously annotated as ProRS1 or PRORS1 but renamed in tRNA synthetase series g10070.t1,Cre09.g406200.t1.1,TSO1 PF03129,PF00587,PF09180 PTHR11451,PTHR11451:SF6 KOG4163 6.1.1.15 K01881 GO:0004812,GO:0005524,GO:0006412,GO:0000166,GO:0005737,GO:0006418,GO:0004827,GO:0006433 AT5G52520.1 OVA6,PRORS1 Class II aaRS and biotin synthetases superfamily protein Cre09.g386744 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g9127.t1,Cre29.g778550.t1.1,Cre29.g778550.t1.2 PF03314 - - - - - - - - Cre12.g530900 - 0 8 1.0 1.0 0 8 1.0 1.0 O n upregulated 6 - - g13067.t1,Cre12.g530900.t1.1 PF01061,PF00005 PTHR19241,PTHR19241:SF89 KOG0061 - K05681 GO:0016020,GO:0005524,GO:0016887 AT2G01320.3 - ABC-2 type transporter family protein Cre09.g386740 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g9123.t1,Cre29.g778350.t1.1,Cre29.g778350.t1.2 - - - - - - - - - Cre16.g675301 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g16729.t1,Cre01.g066300.t1.1,Cre01.g066300.t1.2 PF00400 PTHR22842 KOG0316 - K13124 - AT5G64730.1 - Transducin/WD40 repeat-like superfamily protein Cre09.g386749 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g9132.t1 - - - - - - - - - Cre17.g697950 AAA3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 3 Plastidic ADP/ATP translocase ADP,ATP carrier protein; belongs to a plant-specific transporter family g16927.t1,AAA3 PF03219 - - - - - AT1G15500.1 ATNTT2 TLC ATP/ADP transporter Cre09.g414650 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 16 - - g10268.t1 PF00069 PTHR24055:SF165,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT3G48750.1 CDC2,CDC2A,CDC2AAT,CDK2,CDKA1,CDKA;1 cell division control 2 Cre01.g044300 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g991.t1,Cre01.g044300.t1.1 - - - - - - - - - Cre13.g571950 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g14066.t1,Cre13.g571950.t1.1 PF01596 PTHR10509 KOG1663 - - GO:0008171 AT3G62000.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre01.g007150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g187.t1 PF00622,PF10607 PTHR12864,PTHR12864:SF1 - - - GO:0005515 AT4G09340.1 - SPla/RYanodine receptor (SPRY) domain-containing protein Cre01.g022550 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g520.t1 - - - - - - - - - Cre09.g391838 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 14 - - g9707.t1,Cre02.g127300.t1.1,Cre02.g127300.t1.2 PF01764 - - - - GO:0004806,GO:0006629 AT1G30370.1 - alpha/beta-Hydrolases superfamily protein Cre16.g650600 MST1 - 0 12 1.0 1.0 0 12 1.0 1.0 SP n - 16 Mastigoneme-like flagellar protein Mastigoneme-like protein; 240 kDa flagellar protein in Chlamydomonas; Genbank entry AF508983. Mastigonemes are protein projections from the flagellar membrane. Found in the flagellar proteome [PMID: 15998802] g15740.t1,Cre16.g650600.t1.1,MST1 PF07699 PTHR22727,PTHR22727:SF9 - - - - - - - Cre05.g246750 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 8 - - g5197.t1 - - - - - - - - - Cre05.g246753 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g5199.t1 - - - - - - - - - Cre05.g246752 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5198.t1 - - - - - - - - - Cre17.g740650 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 16 - - g17915.t1 PF01753 PTHR13244 - - - GO:0008270 - - - Cre12.g547850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g13595.t1,Cre12.g547850.t1.1 - - - - - - AT4G03150.1 - - Cre17.g740600 MOT50 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 16 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g17914.t1,Cre17.g740600.t1.1,MOT50, g17914.t2,MOT50 PF00089 PTHR25936,PTHR25936:SF318 KOG3627 3.4.21.- K09625 GO:0004252,GO:0006508 - - - Cre11.g481350 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 7 - - g11952.t1 - - - - - - - - - Cre02.g100500 CYG22 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 5 Adenylate/guanylate cyclase Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g2046.t2, g2046.t1 PF00211 PTHR11920 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre14.g623350 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 16 - - g15024.t1,Cre14.g623350.t1.1 - - - - - - - - - Cre10.g452050 LHCA4 - 0 1 1.0 nan 0 1 1.0 nan C Y - 6 Light-harvesting protein of photosystem I - g11104.t1,Cre10.g452050.t1.1 PF00504 PTHR21649 - - K08910 GO:0009765,GO:0016020 AT3G47470.1 CAB4,LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 Cre06.g293450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g6797.t1, g6797.t2,Cre06.g293450.t1.1 - - - - - - - - - Cre19.g750947 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated - - - g18137.t1,Cre33.g782450.t1.1,Cre33.g782450.t1.2 PF00847 PTHR11584:SF272,PTHR11584 - - - GO:0003700,GO:0006355 AT2G39250.1 SNZ Integrase-type DNA-binding superfamily protein Cre01.g001671 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g39.t1 - - - - - - - - - Cre10.g449901 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g11059.t1 - - - - - - - - - Cre04.g220750 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g4816.t1 - - - - - - - - - Cre16.g676650 AP1G1 - 0 1 1.0 nan 0 1 1.0 nan O n - - Gamma1-Adaptin Expressed protein. Gamma1-Adaptin, clathrin adaptor complex subunit, putative member of AP-1 complex g16582.t1,Cre16.g676650.t1.1,AP1G1 PF01602,PF02883 PTHR22780,PTHR22780:SF5 KOG1062 - K12391 GO:0006886,GO:0016192,GO:0030117,GO:0030131 AT1G60070.1 - Adaptor protein complex AP-1, gamma subunit Cre03.g160000 HDA3 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated 3 - - g3276.t2,Cre03.g160000.t1.1,HDA3, g3276.t1,HDA3 PF00850 PTHR10625,PTHR10625:SF25 KOG2652 - - - AT3G18520.2 ATHDA15,HDA15 histone deacetylase 15 Cre01.g043650 DLU2,MOT37 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 Outer arm dynein light chain, ODA8 Identified by comparative genomics as being present only in organisms having motile (MOT) cilia. Identified by Desai et al. as the locus for the outer arm dynein light chain, ODA8 (Chlamy meeting, 2010). Previously annotated a MOT37 g976.t1,MOT37 - PTHR22708 - - - - AT4G03260.1 - Outer arm dynein light chain 1 protein Cre17.g701500 DNJ1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 DnaJ-like protein DnaJ-like protein; probably cytosolic, as judged from absence of N-ter extension and from homology to cytosolic ATJ2 and ATJ3 from Arabidopsis; presumably involved in protein folding, since it contains N-terminal J-domain (pfam00226), Cys-rich, DnaJ_CXXCX g17007.t1,Cre17.g701500.t1.1 PF00684,PF00226,PF01556 PTHR24076,PTHR24076:SF72 KOG0712 - - GO:0006457,GO:0031072,GO:0051082 AT5G22060.1 ATJ2,J2 DNAJ homologue 2 Cre10.g459550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g11270.t1 PF07162 PTHR12968 KOG4028 - - - - - - Cre06.g291900 PHD1 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 Phosducin-like protein Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis; cd02988 g6763.t1,Cre06.g291900.t1.1,PHD1 PF02114 PTHR21148:SF1,PTHR21148 KOG3170 - - - AT5G14240.1 - Thioredoxin superfamily protein Cre07.g353300 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 16 - - g8217.t1,Cre07.g353300.t1.1 PF00153 PTHR24089:SF36,PTHR24089 KOG0769 - K13354 - AT2G39970.1 - Mitochondrial substrate carrier family protein Cre08.g360500 ERM2 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 9 ERD4-related membrane protein Transmembrane protein with a DUF221 domain of unknown function; this domain is present in many eukaryotes, in particular in Arabidopsis ERD4 (early response to dehydration); belongs to a cluster of 4 closely linked and related Chlamydomonas ERM genes g8442.t1,ERM2 PF02714 PTHR13018:SF5,PTHR13018 KOG1134 - - GO:0016020 AT1G11960.1 - ERD (early-responsive to dehydration stress) family protein Cre06.g256400 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g5761.t1 - - - - - - - - - Cre03.g185300 GAK1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 14 - - g3840.t1,Cre03.g185300.t1.1,GAK1 PF08544,PF00288,PF10509 PTHR10457:SF6,PTHR10457 KOG0631 2.7.1.46 K12446 GO:0005524,GO:0016301,GO:0016310 AT4G16130.1 ARA1,ATISA1,ISA1 arabinose kinase Cre10.g465850 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11418.t1,Cre10.g465850.t1.1 - PTHR12272:SF11,PTHR12272 - - K12572 - - - - Cre16.g656600 TRX19 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 6 - - g15870.t1,Cre16.g656600.t1.1,TRX19 PF00085 PTHR10438:SF69,PTHR10438 KOG0907 - K03671 GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT1G43560.1 Aty2,ty2 thioredoxin Y2 Cre09.g392023 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g9713.t1,Cre02.g127600.t1.1,Cre02.g127600.t1.2 - - - - - - - - - Cre02.g103350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g2111.t1 PF01425 PTHR11895,PTHR11895:SF7 KOG1211 - - GO:0016884 AT5G64440.1 AtFAAH,FAAH fatty acid amide hydrolase Cre16.g657950 SSA5 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 Predicted protein Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA) g15897.t1,SSA5 PF01130 PTHR11923,PTHR11923:SF20 - - K06259 GO:0007155,GO:0016020 - - - Cre12.g495650 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g12134.t1,Cre12.g495650.t1.1 PF00400 PTHR19847,PTHR19847:SF7 - - - - - - - Cre08.g383600 SRR21 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 14 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g9030.t1,SRR21 PF00530 PTHR19331,PTHR19331:SF367 - - - GO:0005044,GO:0016020 - - - Cre10.g461575 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 16 - - g11316.t2,Cre10.g461605.t2.1, g11316.t1,Cre10.g461605.t1.2, g11316.t3,Cre10.g461605.t3.1 - PTHR10287 - - - - - - - Cre01.g036900 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 15 - - g828.t1 PF00069 PTHR23257:SF279,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre07.g313900 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g7264.t1 - - - - - - - - - Cre04.g215600 - 0 20 1.0 1.0 0 20 1.0 1.0 O n upregulated - - - g4660.t1,Cre04.g215600.t1.1, g4660.t2 PF05724 PTHR10108,PTHR10108:SF241 - - - GO:0005737,GO:0008119,GO:0008152 AT2G43940.1 ATHOL3,HOL3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre14.g627411 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g15108.t1,Cre14.g627450.t1.3 PF01753 PTHR13146 - - - GO:0008270 - - - Cre39.g760047 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g18376.t1 PF04937,PF05699 PTHR23272 KOG1121 - - GO:0046983 AT1G62870.1 - - Cre01.g037050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g831.t1,Cre01.g037050.t1.1 PF00645 PTHR15447 - - - GO:0003677,GO:0008270 - - - Cre03.g161350 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g3306.t1 - - - - - - - - - Cre01.g042300 SRR6 - 0 1 1.0 nan 0 1 1.0 nan C n - 17 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g948.t1,SRR6 PF00530 PTHR19331,PTHR19331:SF365 - - - GO:0005044,GO:0016020 - - - Cre16.g659800 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g15938.t1,Cre16.g659800.t1.1 - - - - - - - - - Cre12.g485950 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 1 - - g12278.t1,Cre12.g485950.t1.1 PF02373 PTHR12480:SF5,PTHR12480 KOG2130 - - - AT5G06550.1 - - Cre16.g647750 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15679.t1,Cre16.g647750.t1.1 - - - - - - - - - Cre16.g695050 HCD1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g15569.t1,Cre16.g695050.t1.1,HCD1 PF00378,PF00725,PF02737 PTHR23309 KOG1683 1.1.1.211,1.1.1.35,4.2.1.17 K10527 GO:0003824,GO:0008152,GO:0006631,GO:0016491 AT3G06860.1 ATMFP2,MFP2 multifunctional protein 2 Cre05.g236450 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g5437.t1, g5437.t2 - - - - - - - - - Cre09.g411975 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g10200.t1 - - - - - - - - - Cre12.g549450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g13559.t1,Cre12.g549450.t1.1 PF01557 PTHR11820,PTHR11820:SF7 KOG1535 - - GO:0003824,GO:0008152 AT4G15940.1 - Fumarylacetoacetate (FAA) hydrolase family Cre02.g109683 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 1 - - g2250.t1,Cre02.g109700.t1.3 PF01842,PF00010 - - - - GO:0008152,GO:0016597,GO:0006355,GO:0030528 - - - Cre17.g742400 PTK17 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 9 Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g17955.t1,PTK17 PF00069,PF07714 PTHR23257,PTHR23257:SF319 - - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre06.g259000 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g5823.t1,Cre06.g259000.t1.1 - - - - - - - - - Cre10.g445100 CGL50 - 0 2 1.0 1.0 0 2 1.0 1.0 C Y upregulated 6 Predicted protein Conserved expressed protein of unknown function g10942.t1 - - - - - - AT4G09620.1 - Mitochondrial transcription termination factor family protein Cre03.g163850 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 10 - - g3359.t1,Cre03.g163850.t1.1 PF02182 PTHR14140:SF1,PTHR14140 - - - GO:0042393 AT1G57820.1 ORTH2,VIM1 Zinc finger (C3HC4-type RING finger) family protein Cre03.g164800 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 15 - - g3378.t2, g3378.t1,Cre03.g164800.t1.1 - PTHR24359,PTHR24359:SF71 - - - - AT5G14720.1 - Protein kinase superfamily protein Cre25.g756297 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g18279.t1,Cre40.g786181.t1.1,Cre40.g786181.t1.2 - - - - - - - - - Cre05.g239300 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g5520.t1 - - - - - - - - - Cre02.g095123 - 0 1 1.0 nan 0 1 1.0 nan M n - 18 - - g1896.t1,Cre11.g473350.t1.1,Cre11.g473350.t1.2 - - - - - - - - - Cre02.g095122 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 Peptidyl-prolyl cis-trans isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase); probably targeted to the chloroplast lumen (homology to At5g13410 and bipartite cTP with RR motif) [PMID: 15701785] g1895.t1,Cre11.g473300.t1.1 PF00254 PTHR10516 KOG0544 - - GO:0006457 AT5G13410.1 - FKBP-like peptidyl-prolyl cis-trans isomerase family protein Cre02.g095120 ANK18 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 Predicted protein with ankyrin repeats Protein of unknown function with ankyrin repeats g1893.t2,ANK18, g1893.t1 PF00023 PTHR24198:SF303,PTHR24198, PTHR24198:SF302,PTHR24198 KOG4412 - - GO:0005515 AT3G04710.3 - ankyrin repeat family protein Cre02.g095127 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 - - g1900.t1,Cre11.g473550.t1.1 PF00248 PTHR11732:SF90,PTHR11732 KOG1575 - - GO:0016491,GO:0055114 AT2G27680.1 - NAD(P)-linked oxidoreductase superfamily protein Cre02.g095126 DPE2 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 alpha-1,4-glucanotransferase alpha-1,4-glucanotransferase; transfers mostly maltosyl residues from a donor oligosaccharide to the nonreducing end of an acceptor; probable cytosolic isoform. Previously incorrectly annotated as DPE1, which properly referred to the gene model/locus for g1899.t1,Cre11.g473500.t1.1,DPE2 PF00686,PF02446 - - 2.4.1.25 K00705 GO:0003824,GO:0005975,GO:0004134 AT2G40840.1 DPE2 disproportionating enzyme 2 Cre03.g177150 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g3662.t1,Cre03.g177150.t1.1 PF03330 - - - - - - - - Cre02.g095129 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g1902.t1,Cre11.g473650.t1.1,Cre11.g473650.t1.2 PF07714 PTHR23257:SF392,PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT1G79570.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre02.g095128 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 4 - - g1901.t1 - - - - - - - - - Cre02.g117100 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g2424.t1,Cre02.g117100.t1.1 - - - - - - - - - Cre04.g213761 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g4492.t1,Cre49.g789550.t1.1, g4492.t2,Cre49.g789550.t2.1 PF03061 - - 3.1.2.- K07107 - AT1G68280.1 - Thioesterase superfamily protein Cre01.g034500 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 13 - - g779.t1,Cre01.g034500.t1.1 - - - - - - - - - Cre24.g755347 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - DEAH-box RNA helicase DEAH-box RNA helicase involved in post-transcriptional gene silencing (AAG33228), similarity to mRNA splicing factor. Previously annotated as MUT6 g18255.t1,Cre05.g230550.t1.1,Cre05.g230550.t1.2 PF00271,PF07717,PF00270,PF04408 PTHR18934:SF68,PTHR18934 KOG0924 3.6.4.13 K12815 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT5G13010.1 EMB3011 RNA helicase family protein Cre08.g384650 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 2 - - g9052.t1,Cre08.g384650.t1.1 PF00504 PTHR14154:SF1,PTHR14154 - - - - AT3G22840.1 ELIP,ELIP1 Chlorophyll A-B binding family protein Cre03.g196250 CEP3 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 5 - - g4065.t1,CEP3 PF00112 PTHR12411:SF145,PTHR12411 - - - GO:0006508,GO:0008234 AT1G02300.1 - Cysteine proteinases superfamily protein Cre02.g107500 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 17 - - g2204.t1,Cre02.g107500.t1.1 - - - - - - - - - Cre03.g183300 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 5 - - g3799.t2, g3799.t1 PF00686 - - - - GO:0003824,GO:0005975 AT5G01260.2, AT5G01260.1 - Carbohydrate-binding-like fold Cre12.g499400 CYN2,CYN18-2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID:15047905]; cytosolic; similar to At2g36130 (AtCYP18-2) and At2g21130 (AtCYP19-2). Previously annotated as CYN18-2 g12592.t1,Cre12.g499400.t1.1,CYN2 PF00160 PTHR11071,PTHR11071:SF41 KOG0881 5.2.1.8 K12733 GO:0003755,GO:0006457 AT2G36130.1 - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Cre06.g287850 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 15 - - g6685.t1,Cre06.g287850.t1.1, g6685.t2 - - - - - - - - - Cre06.g304400 SOUL4 - 0 5 1.0 1.0 0 5 1.0 1.0 O Y upregulated 4 SOUL heme-binding protein SOUL heme-binding protein. Conserved expressed protein g7046.t1 PF04832,PF10184 PTHR11220,PTHR11220:SF1 - - - - AT5G20140.1 - SOUL heme-binding family protein Cre04.g224200 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 17 - - g4891.t1,Cre04.g224200.t1.1 PF03762 PTHR18841 - - - GO:0030704 - - - Cre02.g144700 PTB5 - 0 1 1.0 nan 0 1 1.0 nan O n - 6 Sodium/phosphate symporter Putative phosphate transporter, similar to yeast Pho89 and Neurospora PHO4 probable Na+/Pi symporters; present in a cluster of four highly related PTB family members on scaffold 24, including PTB9, PTB12 and PTB4. g2577.t1,Cre02.g144700.t1.1,PTB5 PF01384 PTHR11101:SF7,PTHR11101 KOG2493 - K14640 GO:0005315,GO:0006817,GO:0016020 AT3G26570.1 ORF02,PHT2;1 phosphate transporter 2;1 Cre11.g479800 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g11910.t1 PF00651 PTHR24413 - - - GO:0005515 AT1G01640.1 - BTB/POZ domain-containing protein Cre03.g195500 TGL9 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 1 - - g4051.t2,Cre03.g195500.t1.1,TGL9, g4051.t1,TGL9 PF01734 PTHR12406:SF1,PTHR12406 - - - GO:0006629 AT1G33270.1 - Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein Cre06.g273100 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated - - - g6127.t1 PF03067 PTHR21113 - - - GO:0019028 - - - Cre09.g415900 TPT15,MOT20 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 Triose phosphate transporter Triose phosphate transporter . Identified by comparative genomics as being present only in organisms having motile (MOT) cilia. Previously annotated as OT20 g10295.t1,Cre09.g415900.t1.1,TPT15 PF03151 PTHR11132 KOG1441 - - - AT4G32390.1 - Nucleotide-sugar transporter family protein Cre17.g708901 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g17173.t1,Cre17.g708900.t1.3 - - - - - - - - - Cre03.g176200 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g3639.t1,Cre03.g176200.t1.1 - PTHR22904,PTHR22904:SF163 - - - - AT2G42580.1 TTL3,VIT tetratricopetide-repeat thioredoxin-like 3 Cre09.g400330 ALK6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Aurora-like kinase - g9960.t2,Cre02.g137550.t2.1,ALK6, g9960.t1,Cre02.g137550.t1.1,ALK6 PF00069 PTHR24349:SF103,PTHR24349 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT4G32830.1 AtAUR1,AUR1 ataurora1 Cre16.g660390 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g15951.t2, g15951.t1 PF00685,PF00415 PTHR15723 - 2.8.2.33 K08106 GO:0008146 AT5G48330.1 - Regulator of chromosome condensation (RCC1) family protein Cre14.g624650 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g15049.t1,Cre14.g624650.t1.1 - - - - - - - - - Cre12.g501250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g12551.t1 - - - - - - - - - Cre12.g509400 RIR3,RIR2B - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 Ribonucleoside-diphosphate reductase R2-like subunit Ribonucleotide Reductase (RNR), small subunit. Previously annotated as RIR2B g12364.t1,Cre12.g509400.t1.1,RIR2B PF00268 PTHR23409,PTHR23409:SF6 KOG1567 1.17.4.1 K10808 GO:0004748,GO:0009186,GO:0055114 AT3G23580.1 RNR2,RNR2A ribonucleotide reductase 2A Cre17.g706500 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 9 - - g17121.t1 - - - - - - - - - Cre17.g713305 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17272.t1 - - - - - - - - - Cre04.g211600 SNF1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 16 - - g4747.t1,SNF1 PF00069,PF02149 PTHR24343,PTHR24343:SF123 KOG0583 - - GO:0004672,GO:0005524,GO:0006468,GO:0004674 AT3G01090.2 AKIN10,KIN10,SNRK1.1 SNF1 kinase homolog 10 Cre16.g669700 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 10 - - g16236.t1 - - - - - - - - - Cre10.g428150 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 5 - - g10574.t1 PF03109 PTHR10566:SF24,PTHR10566 KOG1235 - K08869 - AT2G40090.1 ATATH9,ATH9 ABC2 homolog 9 Cre01.g027250 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g623.t1,Cre01.g027250.t1.1 - - - - - - - - - Cre12.g496650 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 - - g12652.t1,Cre12.g496650.t1.1 PF04116 PTHR12863 KOG0539 - - GO:0005506,GO:0006633,GO:0016491,GO:0055114 AT2G34770.1 ATFAH1,FAH1 fatty acid hydroxylase 1 Cre06.g260600 PPP22 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g5856.t1,Cre06.g260600.t1.1,PPP22 - PTHR14095 KOG2562 - K11583 - AT5G44090.1 - Calcium-binding EF-hand family protein Cre03.g185150 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 - - g3837.t1 - - - - - - - - - Cre04.g226200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g4950.t1 PF00069 PTHR24362 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G04810.1 ATNEK2,NEK2 NIMA-related kinase 2 Cre09.g398750 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g9301.t1,Cre09.g398750.t1.1 PF00069,PF07714 PTHR23257,PTHR23257:SF99 KOG1187 - - GO:0004672,GO:0005524,GO:0006468 AT5G58950.1 - Protein kinase superfamily protein Cre14.g632700 - 0 11 1.0 1.0 0 11 1.0 1.0 M n - 10 - - g15245.t1 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT1G16260.1 - Wall-associated kinase family protein Cre04.g219725 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 8 - - g4789.t1,Cre04.g219742.t1.2 - - - - - - - - - Cre12.g523400 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - - - g12890.t1 - - - - - - - - - Cre06.g260500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g5854.t1 - - - - - - - - - Cre12.g511350 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated - - - g12321.t1 - - - - - - - - - Cre02.g081250 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g1487.t1,Cre02.g081250.t1.1 - - - - - - AT3G46780.1 PTAC16 plastid transcriptionally active 16 Cre02.g141866 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g2735.t1, g2735.t2 - - - - - - - - - Cre12.g510400 RBD4,CPLD30 - 0 1 1.0 nan 0 1 1.0 nan C Y - 6 Putative rubredoxin-like protein Putative rubredoxin-like protein. Conserved expressed thylakoid localized protein with rubredoxin cluster; strong similarity to unknown protein [Oryza sativa (japonica cultivar-group). AP005504.3 Gene designation P0577B11.138. Contains rubredoxin-type ir g12341.t1,RBD4 - PTHR14769 - - - - AT5G17170.1 ENH1 rubredoxin family protein Cre06.g296300 SRR1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; related to SRCR domain found in speract/scavenger receptor (PMID: 14995912) g6853.t1,SRR1, g6853.t2,SRR1 - PTHR25932,PTHR25932:SF110 - - - - - - - Cre01.g051000 PRM - 0 1 1.0 nan 0 1 1.0 nan C n - 1 - - g1129.t1,PRM PF06325 PTHR11006:SF35,PTHR11006 KOG1499 - - GO:0005737,GO:0006479,GO:0008276 AT4G29510.1 ATPRMT11,ATPRMT1B,PRMT11,PRMT1B arginine methyltransferase 11 Cre14.g627300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g15105.t1 - - - - - - - - - Cre06.g293150 PGM12 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 12 - - g6790.t1,Cre06.g293150.t1.1,PGM12 PF00300 - KOG4754 - - - - - - Cre12.g526220 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12964.t1 - - - - - - - - - Cre01.g015600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 5 - - g375.t1 PF02985 PTHR23346 KOG1242 - - GO:0005515 AT1G64790.1 ILA ILITYHIA Cre17.g718150 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 17 - - g17380.t1 - - - - - - - - - Cre16.g679350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g16523.t1 - - - - - - - - - Cre09.g411100 RPS10 - 0 1 1.0 nan 0 1 1.0 nan O n - - Ribosomal protein S10, component of cytosolic 80S ribosome and 40S small subunit Cytosolic 80S ribosomal protein S10; Cytosolic 40S small ribosomal subunit protein S10 g10180.t1,Cre09.g411100.t1.1, g10180.t2 PF03501 PTHR12146 KOG3344 - K02947 - AT5G41520.1 - RNA binding Plectin/S10 domain-containing protein Cre01.g017900 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 8 - - g422.t1 PF01011 - - - - - - - - Cre15.g638101 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 12 - - g15326.t1 PF03692 - - - - - - - - Cre12.g528750 RPL12 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Ribosomal protein L12, component of cytosolic 80S ribosome and 60S large subunit Cytosolic 80S ribosomal protein L12; Cytosolic 60S large ribosomal subunit protein L12 g13020.t1,Cre12.g528750.t1.1 PF03946,PF00298 PTHR11661 KOG0886 - K02870 GO:0003735,GO:0005840,GO:0006412 AT2G37190.1 - Ribosomal protein L11 family protein Cre12.g540051 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 - - g13776.t1 PF06979 - KOG4478 - - - AT2G35790.1 - - Cre03.g207250 GLN4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 Glutamine synthetase Putative glutamine synthetase (EC 6.3.1.2), (Glutamate-ammonia ligase); no predicted organelle targeting g4164.t1,Cre03.g207250.t1.1 PF00120 PTHR20852:SF14,PTHR20852 KOG0683 - - GO:0004356,GO:0006807 AT5G35630.1 ATGSL1,GLN2,GS2 glutamine synthetase 2 Cre13.g581600 ASA4 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 Mitochondrial F1F0 ATP synthase associated 31.2 kDa protein Mitochondrial ATP synthase associated protein 4; unknown evolutionary origin [PMID: 11744727, PMID: 15710684] g14283.t1,Cre13.g581600.t1.1,ASA4 - - - - - - - - - Cre12.g505400 - 0 6 1.0 1.0 0 6 1.0 1.0 O n upregulated 4 - - g12459.t1,Cre12.g505400.t1.1 PF03403 PTHR10272 KOG3847 3.1.1.47 K01062 GO:0003847,GO:0016042 - - - Cre14.g609800 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g14699.t1,Cre14.g609800.t1.1 - - - - - - - - - Cre02.g095950 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 10 - - g1948.t1 PF04640 - - - - - AT1G76590.1 - PLATZ transcription factor family protein Cre04.g216650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 5 - - g4505.t1 PF01947 - - - - - - - - Cre12.g541904 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - - - - g13734.t1,Cre12.g541904.t1.1 PF08755 - - - - - AT2G03390.1 - uvrB/uvrC motif-containing protein Cre02.g099601 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - - - g2027.t1 - - KOG1003 - - - AT5G47690.3 - binding Cre09.g396000 NAR5,NRT2.3 - 0 1 1.0 nan 0 1 1.0 nan O n - - Nitrate transporter High affinity nitrite transporter and low affinity nitrate transporter (system III). Previously annotated as NAR5 [PMID: 11289304] g9369.t1,Cre09.g396000.t1.1,NAR5 PF07690 PTHR24003,PTHR24003:SF2 KOG2533 - - GO:0016021,GO:0055085 AT1G12940.1 ATNRT2.5,NRT2.5 nitrate transporter2.5 Cre06.g298225 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g6898.t2,Cre06.g298219.t1.2, g6898.t1,Cre06.g298219.t2.1 - - - - - - - - - Cre13.g602450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 - - g14559.t1,Cre13.g602450.t1.1 - - - - - - AT5G42765.1 - - Cre12.g542400 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 10 - - g13724.t1 - PTHR11076,PTHR11076:SF4 - - - - AT4G31400.1 CTF7 damaged DNA binding;DNA-directed DNA polymerases Cre17.g739201 FAP293 - 0 4 1.0 1.0 0 4 1.0 1.0 M n downregulated 12 - - g17877.t1,Cre17.g739200.t1.2 - - - - - - - - - Cre06.g249850 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g5596.t1 - - - - - - - - - Cre12.g558100 PRMT2,PRM2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 Protein-/Histone-arginine N-methyltransferase Protein-/Histone-arginine N-methyltransferase, ChromDB PRMT3402. Ribosomal L11 methyltransferase-like g13368.t1,Cre12.g558100.t1.1,PRM2 PF05185 PTHR11006:SF34,PTHR11006 KOG1499 - - GO:0005737,GO:0008168 AT1G04870.2 ATPRMT10,PRMT10 protein arginine methyltransferase 10 Cre16.g695200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g15565.t1 - - - - - - - - - Cre10.g418000 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g10351.t1,Cre10.g418000.t1.1 - - - - - - AT2G38450.1 - - Cre17.g723600 IFT81 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 14 Intraflagellar transport protein 81 AY615519, PMID: 15955805 g17502.t1,Cre17.g723600.t1.1 - PTHR15614 - - - - - - - Cre10.g449450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 15 - - g11050.t1 - - - - - - - - - Cre08.g361900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g8472.t1,Cre08.g361900.t1.1 - - - - - - - - - Cre05.g239151 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 9 - - g5516.t1,Cre05.g239122.t1.2 PF03133 PTHR25159:SF9,PTHR25159 - - - GO:0004835,GO:0006464 - - - Cre05.g234300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g5087.t1,Cre05.g234300.t1.1 PF10602,PF01399 PTHR14145:SF2,PTHR14145 KOG0686 - K12175 GO:0005515 AT3G61140.1 ATFUS6,ATSK31,COP11,CSN1,EMB78,FUS6,SK31 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain Cre01.g019500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g456.t1,Cre01.g019500.t1.1 PF00400 PTHR22847 - - - - AT5G08390.1 - Transducin/WD40 repeat-like superfamily protein Cre09.g394510 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 3 - - g9784.t1,Cre02.g130750.t1.1 PF00686 - KOG1003 - - GO:0003824,GO:0005975 AT5G01260.2 - Carbohydrate-binding-like fold Cre10.g437000 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 10 - - g10770.t1,Cre10.g437000.t1.1 - - - - - - - - - Cre09.g403900 FAP294 - 0 1 1.0 nan 0 1 1.0 nan O n - - Flagellar Associated Protein Flagellar Associated Coiled-Coil Protein, found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g9183.t1,Cre09.g403900.t1.1 - - - - - - - - - Cre03.g145387 FAP239 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g2934.t1,Cre01.g059050.t1.1,Cre01.g059050.t1.2 - - - - - - - - - Cre01.g010816 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g269.t1 - - - - - - - - - Cre02.g075200 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g1345.t1 - - - - - - - - - Cre02.g086326 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g1600.t1 - - - - - - - - - Cre06.g291550 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g6756.t1,Cre06.g291550.t1.1 - - - - - - - - - Cre09.g402050 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g9223.t1 - - - - - - - - - Cre06.g280250 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - - - - g6518.t1,Cre06.g280250.t1.1 - - - - - - - - - Cre03.g144564 MMP13 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 Matrix metalloproteinase Matrix metalloproteinase belonging to the M11 peptidase family g2892.t1,Cre60.g792000.t1.1,MMP13 PF05548 - - - - - - - - Cre01.g004850 TXE1 - 0 6 1.0 1.0 0 6 1.0 1.0 M n upregulated 15 - - g117.t1,TXE1 PF07500,PF04851,PF08711 - KOG1105 - - GO:0006351,GO:0003677,GO:0005524,GO:0016787,GO:0005634,GO:0030528 - - - Cre16.g693202 - 0 6 1.0 1.0 0 6 1.0 1.0 C n upregulated 2 - - g15615.t1 PF03460,PF01077 PTHR11493:SF2,PTHR11493 KOG0560 1.8.7.1 K00392 GO:0016491,GO:0055114,GO:0020037,GO:0051536 AT5G04590.1 SIR sulfite reductase Cre16.g693204 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 14 - - g15617.t1 - - - - - - - - - Cre10.g443801 - 0 1 1.0 nan 0 1 1.0 nan SP n - 10 - - g10911.t1 PF06309 - - - - GO:0005524,GO:0051085 - - - Cre13.g570550 CDD1 - 0 1 1.0 nan 0 1 1.0 nan M Y - 5 Cytidine deaminase CMP/dCMP deaminase, zinc-binding; Cytidine aminohydrolase (CDA). Previously annotated as CDD1 g14034.t1,Cre13.g570550.t1.1 PF08211,PF00383 PTHR11644,PTHR11644:SF5 KOG0833 3.5.4.5 K01489 GO:0004126,GO:0008270,GO:0016787 AT2G19570.1 AT-CDA1,CDA1,DESZ cytidine deaminase 1 Cre12.g557100 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 13 - - g13386.t1,Cre12.g557100.t1.1 PF01135 PTHR11579 KOG1661 2.1.1.77 K00573 GO:0004719,GO:0006464 AT3G48330.1 ATPIMT1,PIMT1 protein-l-isoaspartate methyltransferase 1 Cre01.g023950 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 16 - - g554.t1 - - - - - - - - - Cre07.g333500 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g7754.t1,Cre07.g333500.t1.1 - - - - - - - - - Cre03.g186400 SCR1 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - Putative phospholipid scramblase Putative phospholipid scramblase. Homologous to metazoan scramblase, which exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids g3862.t2,SCR1, g3862.t1,SCR1 - - KOG0621 - - - - - - Cre15.g641527 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15467.t1, g15467.t2 PF00023 PTHR24158,PTHR24158:SF306 KOG4412 - - GO:0005515 AT5G14230.1 - - Cre14.g610450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 9 - - g14713.t1,Cre14.g610450.t1.1 PF02535 - - - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 - - - Cre07.g335700 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g7815.t1,Cre07.g335700.t1.1 - - - - - - - - - Cre07.g332450 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g7734.t1,Cre07.g332450.t1.1 PF09084 - - - - - - - - Cre17.g725600 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 10 - - g17548.t1 - - - - - - - - - Cre10.g451950 AAT1 - 0 1 1.0 nan 0 1 1.0 nan M n - 6 Alanine aminotransferase Alanine aminotransferase (EC 2.6.1.2); CO2-responsive gene; predicted mitochondrial by Target-P [PMID: 8883380] g11102.t1,Cre10.g451950.t1.1,AAT1 PF00155 PTHR11751:SF29,PTHR11751 KOG0258 2.6.1.2 K00814 GO:0009058,GO:0016769,GO:0030170 AT1G23310.1 AOAT1,GGAT1,GGT1 glutamate:glyoxylate aminotransferase Cre17.g724950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g17532.t1,Cre17.g724950.t1.1 PF02213 - - - - GO:0005515 - - - Cre08.g378950 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 18 - - g8919.t1 PF00069,PF07714 PTHR23257:SF295,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G14000.1 VIK VH1-interacting kinase Cre14.g618611 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14902.t1 PF00754 - - - - GO:0007155 - - - Cre13.g585600 - 0 1 1.0 nan 0 1 1.0 nan C n - 7 - - g14373.t1 - - - - - - - - - Cre12.g501403 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - - - g12547.t1,Cre12.g501403.t1.1 PF03094 PTHR23050,PTHR23050:SF43 KOG0027 - - GO:0008219,GO:0016021 AT4G24250.1 ATMLO13,MLO13 Seven transmembrane MLO family protein Cre03.g161578 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g3312.t2,Cre03.g161700.t4.1, g3312.t4,Cre03.g161700.t3.1, g3312.t3,Cre03.g161700.t2.1, g3312.t1,Cre03.g161700.t1.3 - - - - - - AT3G48860.2, AT4G08630.1 - - Cre02.g118151 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g2452.t1 - - - - - - - - - Cre13.g584950 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g14358.t1 - - - - - - - - - Cre14.g628150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g15132.t1 - - - - - - - - - Cre06.g282251 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 6 - - g6565.t1,Cre06.g282251.t1.1 PF01753 - - - - GO:0008270 - - - Cre03.g146127 FAP96 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein of unknown function, found in the flagellar proteome [PMID: 15998802] g2971.t1,Cre01.g060800.t1.1,Cre01.g060800.t1.2 - - - - - - - - - Cre03.g177400 CYA2 - 0 11 1.0 1.0 0 11 1.0 1.0 SP n upregulated 10 - - g3667.t1,CYA2 - PTHR11017,PTHR11017:SF7 - - - - - - - Cre13.g576250 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g14161.t1 PF09734 PTHR13230:SF6,PTHR13230 - - - - - - - Cre12.g541250 NAR1.5 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 3 Nitrite transporter Putative nitrite transporter, possibly chloroplastic [PMID: 11912227; accession AY612641] g13749.t1,Cre12.g541250.t1.1 PF01226 - - - - GO:0005215,GO:0006810,GO:0016020 - - - Cre04.g226050 ARS10 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g4941.t1,ARS10 PF00884 PTHR10342:SF2,PTHR10342 - - - GO:0008152,GO:0008484 - - - Cre01.g025500 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 7 - - g585.t1 - PTHR19959 - - - - AT5G37590.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre01.g020750 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g480.t1,Cre01.g020750.t1.1 - - - - - - - - - Cre03.g156250 FAP186 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g3189.t1,Cre03.g156250.t1.1 PF04366 PTHR15629,PTHR15629:SF2 - - - - AT3G43230.1 - RING/FYVE/PHD-type zinc finger family protein Cre12.g496350 SSD2 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 16 Sterol sensing 5-transmembrane protein Contains a sterol sensing 5-transmembrane domain similar to those in SCAP, Patched, NPC1 and HMGR g12658.t1,Cre12.g496350.t1.1,SSD2 PF02460 PTHR10796,PTHR10796:SF32 KOG1934 - - GO:0008158,GO:0016020 AT4G38350.2 - Patched family protein Cre04.g216000 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g4650.t1,Cre04.g216000.t1.1 - - - - - - - - - Cre12.g527950 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g13003.t1 PF04101,PF03033 PTHR21015:SF22,PTHR21015 - 2.4.1.227 K02563 GO:0005975,GO:0016758,GO:0030246,GO:0030259 AT1G73740.1 - UDP-Glycosyltransferase superfamily protein Cre10.g431400 TRZ1 - 0 10 1.0 1.0 0 10 1.0 1.0 O n upregulated 2 Nuclear RNase Z-like protein Nuclear RNase Z-like protein. Sequence similarity with Arabidopsis TRZ1, a nuclear tRNase Z, beta-lactamase family g10650.t1,Cre10.g431400.t1.1,TRZ1 - PTHR12553:SF4,PTHR12553 - - - - AT1G74700.1 NUZ,TRZ1 tRNAse Z1 Cre12.g510600 STK11,STPK11 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK11 g12337.t1,Cre12.g510600.t1.1,STK11,STPK11 PF00069 PTHR24362,PTHR24362:SF97 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT3G45240.1 ATSNAK2,GRIK1 geminivirus rep interacting kinase 1 Cre10.g466650 FAP252 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG10 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400] g11437.t1,Cre10.g466650.t1.1 - PTHR10891,PTHR10891:SF40 KOG0027 - - - AT2G38910.1 CPK20 calcium-dependent protein kinase 20 Cre12.g553900 CNG2 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 17 Cyclic-nucleotide gated potassium channel - g13455.t1,CNG2 PF00520,PF00027 PTHR10217:SF393,PTHR10217 KOG0500 - K04909 GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G22200.1 AKT2,AKT2/3,AKT3,KT2/3 potassium transport 2/3 Cre03.g157250 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 16 - - g3210.t1 PF00069 PTHR23257:SF354,PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre14.g620300 ANS2,ASB1 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Anthranilate synthase, beta subunit Anthranilate synthase beta subunit based on similarity to Arabidopsis homolog. Previously annotated as ASB1 g14950.t1,Cre14.g620300.t1.1,ANS2 PF00117 PTHR11922,PTHR11922:SF7 KOG0026 4.1.3.27 K01658 - AT1G25220.1 ASB1,TRP4,WEI7 anthranilate synthase beta subunit 1 Cre03.g153550 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g3128.t1,Cre03.g153550.t1.1 - - - - - - - - - Cre10.g464650 CGL36 - 0 1 1.0 nan 0 1 1.0 nan C Y - 14 Transmembrane protein Conserved expressed protein of unknown function; COG5438, Predicted multitransmembrane protein [Function unknown] - some similarity to Arabidopsis protein of unknown function AAN17403.1 GI:23306352 g11385.t1,Cre10.g464650.t1.1 - - - - - - AT3G10405.1 - - Cre17.g717400 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - - - - g17365.t1 - - - - - - AT3G15550.1 - - Cre05.g239978 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g5534.t2, g5534.t1,Cre05.g239978.t1.1 PF02694 - - - - GO:0016020 - - - Cre03.g165500 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g3396.t1,Cre03.g165500.t1.1 - - - - - - - - - Cre09.g407373 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 6 - - g10100.t1,Cre09.g407373.t1.1 PF00583 PTHR23091 - - - GO:0008080,GO:0008152 AT5G11340.1 - Acyl-CoA N-acyltransferases (NAT) superfamily protein Cre17.g710750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g17211.t1, g17211.t2 - - - - - - - - - Cre13.g582650 LF4,MAPK1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 Mitogen-activated protein kinase, Long-flagella mutant LF4 protein Mitogen-activated protein kinase 1 (gi:32130552); Long Flagella 4 (MOK homolog). Characterized by Berman et al. 2003 [PMID: 12842015]. Previously annotated as LF4 g14302.t1,LF4,MAPK1 PF00069 PTHR24055:SF42,PTHR24055 - - - GO:0004672,GO:0005524,GO:0006468 AT4G19110.2 - Protein kinase superfamily protein Cre13.g589600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g14464.t1,Cre13.g589600.t1.1 - - - - - - - - - Cre07.g356000 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8277.t1,Cre07.g356000.t1.1 - - - - - - - - - Cre16.g682475 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 - - g16795.t1,Cre01.g069100.t1.1 PF11397 - - - - - - - - Cre10.g423200 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 16 - - g10468.t1 PF07714 PTHR23257,PTHR23257:SF99 - - - GO:0004672,GO:0006468 AT2G17700.1 - ACT-like protein tyrosine kinase family protein Cre12.g549000 PHC4 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 Cell wall protein pherophorin-C4 Pherophorin-C4 (PHC4) [PMID: 16367971; Genbank entry DQ196110]; extracellular matrix protein (cell wall protein); belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain g13568.t1,Cre12.g549000.t1.1,PHC4 PF12499 - - - - - - - - Cre03.g182400 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g3780.t1 PF01529 PTHR22883 - - - GO:0008270 AT3G26935.1 - DHHC-type zinc finger family protein Cre12.g549002 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g13804.t1 - - - - - - - - - Cre06.g259450 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 7 - - g5832.t1,Cre06.g259450.t1.1 - - - - - - - - - Cre09.g393200 HSP70C - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 5 Heat shock protein 70C HSP70C is one of 9 genes encoding HSP70-like proteins in Chlamydomonas; HSP70C is localized to mitochondria; it is inducible by heat shock and light; PMID: 2779571, 16143837 g9425.t1,Cre09.g393200.t1.1 PF00012 PTHR19375,PTHR19375:SF1 KOG0102 - K03283 GO:0005524 AT5G09590.1 HSC70-5,MTHSC70-2 mitochondrial HSO70 2 Cre10.g465300 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 17 - - g11401.t1 PF00211 PTHR11017,PTHR11017:SF7 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre08.g382620 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 15 - - g9007.t1 PF00400 PTHR22847:SF228,PTHR22847 KOG0271 - - - AT4G02730.1 - Transducin/WD40 repeat-like superfamily protein Cre03.g155250 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 17 - - g3165.t1,Cre03.g155250.t1.1 - - - - - - - - - Cre16.g651750 TSI - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 2 - - g15764.t1,Cre16.g651750.t1.1,TSI PF00133,PF08264 PTHR11946:SF11,PTHR11946 KOG0434 6.1.1.5 K01870 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418 AT4G10320.1 - tRNA synthetase class I (I, L, M and V) family protein Cre14.g631850 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g15227.t1,Cre14.g631850.t1.1 PF06888 PTHR20889 KOG3120 3.1.3.74 K13248 GO:0016791 AT4G29530.1 - Pyridoxal phosphate phosphatase-related protein Cre12.g538376 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g13237.t1 - - - - - - - - - Cre17.g731550 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g17677.t1,Cre17.g731550.t1.1 - - - - - - - - - Cre14.g612750 FAP197 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g14765.t1 - - - - - - - - - Cre10.g446800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g10991.t1,Cre10.g446800.t1.1 PF02431 - - - - GO:0016872,GO:0042398 AT2G26310.1 - Chalcone-flavanone isomerase family protein Cre03.g189200 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g3918.t1,Cre03.g189200.t1.1 PF10229 PTHR13192 - - - - - - - Cre07.g338500 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 9 - - g7874.t1 PF01753 PTHR13244 - - - GO:0008270 - - - Cre01.g048800 NAT8 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1083.t1,NAT8 PF00583 - - - - GO:0008080,GO:0008152 - - - Cre01.g043850 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g981.t1 PF00069 PTHR23257:SF280,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre05.g244850 MOG1,NUOB12 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 9 Ran-interacting protein involved in nuclear trafficking Ran-interacting protein involved in nuclear trafficking. Homolog of Mog1, which interacts with RanGTP g5237.t1,Cre05.g244850.t1.1,MOG1,NUOB12 PF04603 PTHR15837 KOG3329 - - - AT1G69680.1 - Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein Cre17.g734150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17750.t1 PF04176 PTHR21021,PTHR21021:SF16 - - - - AT4G34270.1 - TIP41-like family protein Cre06.g263357 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 15 - - g5917.t1,Cre06.g263357.t1.1 - - - - - - - - - Cre01.g007774 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g200.t1 - PTHR12183 KOG2985 - - - AT5G19080.1 - RING/U-box superfamily protein Cre01.g047350 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g1053.t1 - - - - - - - - - Cre03.g169500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g3489.t1,Cre03.g169500.t1.1 PF00069 PTHR24055:SF90,PTHR24055 KOG0593 2.7.11.22 K08824 GO:0004672,GO:0005524,GO:0006468 AT4G19110.2 - Protein kinase superfamily protein Cre03.g183750 OPR16 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 12 - - g3808.t1 - - - - - - - - - Cre14.g615250 TRX18 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g14823.t1,TRX18, g14823.t2,TRX18 PF00085 - - - - GO:0045454 AT5G06430.1 - Thioredoxin superfamily protein Cre06.g266650 HTR45,HTR11 - 0 1 1.0 nan 0 1 1.0 nan C n - - Histone H3 Replication-linked Histone H3 g5985.t1,Cre06.g266650.t1.1,HTR11,HTR45 PF00125 PTHR11426 KOG1745 - K11253 GO:0003677,GO:0000786,GO:0006334 AT4G40030.2 - Histone superfamily protein Cre01.g003250 TNP1 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g76.t1,TNP1 PF07282 PTHR23257,PTHR23257:SF99 - - - - - - - Cre02.g109400 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g2244.t1,Cre02.g109400.t1.1 PF00400 PTHR14205,PTHR14205:SF11 KOG1007 - - - AT1G20540.1 - Transducin/WD40 repeat-like superfamily protein Cre12.g531350 CGL62 - 0 4 1.0 1.0 0 4 1.0 1.0 M Y - 10 Cell cycle associated protein Def CID8; RNA binding CID8; RNA binding / protein binding - may be associated with the cell cycle g13077.t1 PF10497 - - - - - AT1G67780.1 - Zinc-finger domain of monoamine-oxidase A repressor R1 protein Cre08.g384750 AMA3 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g9054.t1,AMA3 PF07821,PF00128 PTHR10357:SF9,PTHR10357 KOG0471 - - GO:0004556,GO:0005509,GO:0005975,GO:0003824,GO:0043169 AT1G69830.1 AMY3,ATAMY3 alpha-amylase-like 3 Cre10.g419050 ATP1B - 0 1 1.0 nan 0 1 1.0 nan M n - 4 Mitochondrial F1F0 ATP synthase, alpha subunit Alpha subunit of the mitochondrial ATP synthase [= human ATP5A1, yeast ATP1]; part of the F1 sector; isoform of ATP1A g10374.t2,ATP1B, g10374.t1,ATP1B PF00006 PTHR15184,PTHR15184:SF3 KOG1353 - - GO:0005524,GO:0015986,GO:0045261,GO:0046933,GO:0046961 ATCG00120.1 - ATP synthase subunit alpha Cre08.g371957 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g8713.t1 - PTHR12848 KOG1517 - K07204 - AT3G08850.1 ATRAPTOR1B,RAPTOR1,RAPTOR1B HEAT repeat ;WD domain, G-beta repeat protein protein Cre05.g245101 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g5232.t1 - - - - - - - - - Cre05.g245100 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g5231.t1 - PTHR16128 - - - - - - - Cre07.g335900 CPZ - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - 15 - - g7819.t1,Cre07.g335900.t1.1,CPZ PF00246 PTHR11532:SF27,PTHR11532 KOG2649 3.4.17.22 K07752 GO:0004181,GO:0006508,GO:0008270 AT1G71696.2 SOL1 carboxypeptidase D, putative Cre13.g605650 ALD7 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g14607.t1,Cre13.g605650.t1.1,ALD7 PF00171 PTHR11699,PTHR11699:SF45 KOG2450 1.2.1.8 K00130 GO:0008152,GO:0016491,GO:0055114 AT1G74920.1 ALDH10A8 aldehyde dehydrogenase 10A8 Cre17.g735200 KIN1-2 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 5 - - g17786.t1,Cre17.g735200.t1.1,KIN1-2 PF00225 PTHR24115,PTHR24115:SF315 - - - GO:0003777,GO:0005524,GO:0007018 AT3G63480.2 - ATP binding microtubule motor family protein Cre16.g686061 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g16826.t1 - - - - - - - - - Cre04.g216826 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 8 - - g4510.t3, g4510.t2, g4510.t1,Cre04.g216826.t1.1 - - - - - - - - - Cre07.g332025 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g7723.t1,Cre07.g332025.t1.1 - - - - - - - - - Cre03.g191550 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g3964.t1,Cre03.g191550.t1.1 - - - - - - - - - Cre07.g322000 CSD2,NIFS2 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 6 Cysteine desulfurase Similar to Sll0704 (Synechocystis Csd2), in particular amino acids around active site. COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase; related to selenocysteine lyase. Previously annotated as NIFS2 as well. May have selenocysteine l g7441.t1,Cre07.g322000.t1.1,CSD2,NIFS2 PF00266 PTHR11601 KOG1549 - - GO:0008152 AT5G65720.1 ATNFS1,ATNIFS1,NFS1,NIFS1 nitrogen fixation S (NIFS)-like 1 Cre08.g374200 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 17 - - g8817.t1 PF00069 PTHR24055:SF157,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT1G67580.1 - Protein kinase superfamily protein Cre09.g410200 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g10163.t1,Cre09.g410200.t1.1 - - - - - - - - - Cre11.g480900 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g11938.t1,Cre11.g480900.t1.1 - - - - - - - - - Cre14.g618860 SRH24 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g14912.t1,SRH24 PF00176,PF00271,PF07529 PTHR10799,PTHR10799:SF75 - 3.6.4.12 K11681 GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT3G12810.1 chr13,PIE1,SRCAP SNF2 domain-containing protein / helicase domain-containing protein Cre14.g613150 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 9 - - g14776.t1 - - - - - - - - - Cre10.g435750 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - Serine/Threonine protein kinase Serine/Threonine protein kinase. Previously annotated as two models, STPK21 and PTK26 (for protein tyrosine kinase) g10744.t1 PF00069 PTHR23257,PTHR23257:SF99 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre06.g293650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g6800.t1 - - - - - - - - - Cre07.g342450 SEE3 - 0 17 1.0 1.0 0 17 1.0 1.0 O n - 9 - - g7936.t1,SEE3 - PTHR10887,PTHR10887:SF27 KOG4462 - - - AT1G16800.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre05.g232150 GDH2 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 Glutamate dehydrogenase Glutamate dehydrogenase (EC 1.4.1.2); organelle targeting somewhat ambiguous but weakly predicted by Target-P to be mitochondrial g5136.t1,Cre05.g232150.t1.1,GDH2 PF02812,PF00208 PTHR11606 KOG2250 1.4.1.3 K00261 GO:0006520,GO:0016491,GO:0055114 AT5G07440.1 GDH2 glutamate dehydrogenase 2 Cre14.g620150 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g14944.t1 PF01435 PTHR10120 - - - GO:0004222,GO:0006508,GO:0016020 AT3G27110.1 - Peptidase family M48 family protein Cre02.g108750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g2229.t1,Cre02.g108750.t1.1 PF00069,PF07714 PTHR23257:SF314,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre01.g057791 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g1250.t1,Cre23.g767450.t1.1 - - - - - - - - - Cre12.g530000 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 15 - - g13048.t1,Cre12.g530000.t1.1 PF00069 PTHR24057,PTHR24057:SF123 KOG0660 - - GO:0004672,GO:0005524,GO:0006468 AT4G11330.1 ATMPK5,MPK5 MAP kinase 5 Cre07.g351800 PTK12 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g8183.t1,PTK12, g8183.t2,PTK12 PF00069 PTHR23257, PTHR23257,PTHR23257:SF99 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G50000.1, AT2G39110.1 - Protein kinase superfamily protein Cre01.g000500 ERR3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 4 - - g13.t1,ERR3 PF03407 PTHR10994:SF5,PTHR10994 - - - GO:0005783 AT2G35610.1 XEG113 xyloglucanase 113 Cre02.g116650 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 2 - - g2414.t1,Cre02.g116650.t1.1 PF09409 - - - - - AT1G04850.1 - ubiquitin-associated (UBA)/TS-N domain-containing protein Cre03.g160900 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 16 - - g3296.t1,Cre03.g160900.t1.1 PF00023,PF07714 PTHR23257 KOG0192 - - GO:0005515,GO:0004672,GO:0006468 AT1G73660.1 - protein tyrosine kinase family protein Cre06.g276250 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 5 - - g6192.t1 - - - - - - - - - Cre02.g083850 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 6 - - g1544.t1, g1544.t2 - - - - - - AT1G74530.3 - - Cre03.g188350 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g3901.t1,Cre03.g188350.t1.1 - - - - - - - - - Cre13.g582000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g14290.t1,Cre13.g582000.t1.1 PF05686 PTHR12203 - - - - - - - Cre03.g205800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g4195.t1,Cre03.g205800.t1.1 PF00400 PTHR15440 KOG0294 - - - AT1G65030.1 - Transducin/WD40 repeat-like superfamily protein Cre10.g428600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated - - - g10584.t1 - - - - - - - - - Cre03.g205809 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g4419.t1,Cre19.g754300.t1.1 PF02739,PF01367 PTHR10133 - - - GO:0003677,GO:0008409 AT3G52050.5 - 5\'-3\' exonuclease family protein Cre12.g559200 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 11 - - g13340.t1 - - - - - - - - - Cre15.g641266 TPT22 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 8 - - g15460.t2,Cre15.g641300.t2.1,TPT22, g15460.t1,Cre15.g641300.t1.2,TPT22 PF03151 PTHR11132,PTHR11132:SF13 KOG1441 - - - AT2G30460.1 - Nucleotide/sugar transporter family protein Cre12.g496100 FAP149 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g12664.t1,Cre12.g496100.t1.1 - - - - - - - - - Cre03.g209729 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g4455.t1,Cre19.g755768.t1.1,Cre19.g755768.t1.2 - - - - - - - - - Cre08.g385900 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - - - g9079.t1,Cre08.g385900.t1.1 PF01722 PTHR12735,PTHR12735:SF4 KOG3348 - - - AT5G09830.1 - BolA-like family protein Cre12.g544600 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 2 - - g13670.t1,Cre12.g544600.t1.1 - - - - - - - - - Cre06.g310800 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g7192.t1 - - - - - - - - - Cre03.g178850 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g3702.t1,Cre03.g178850.t1.1 - - - - - - - - - Cre07.g343500 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g7990.t1 - PTHR23151:SF8,PTHR23151 - - - - - - - Cre10.g462300 - 0 7 1.0 1.0 0 7 1.0 1.0 O n downregulated 16 - - g11332.t1 PF00787 PTHR10555,PTHR10555:SF65 KOG2273 - - GO:0005515,GO:0007154,GO:0035091 AT5G58440.1 SNX2a sorting nexin 2A Cre07.g325753 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g7567.t1 - - - - - - - - - Cre08.g366800 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 7 - - g8595.t1 - - - - - - - - - Cre03.g195388 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g4048.t1,Cre03.g195400.t1.3 - - - - - - - - - Cre17.g702700 TPT27 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 8 - - g17035.t1,TPT27 PF03151 PTHR11132 KOG1441 - - - AT3G17430.1 - Nucleotide-sugar transporter family protein Cre16.g677800 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 6 - - g16560.t1,Cre16.g677800.t1.1 PF01963 PTHR21530 KOG2860 - - - AT5G52030.2 - TraB family protein Cre17.g736150 POL1-2 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 16 - - g17807.t1,POL1-2 PF00476 PTHR10133 - - - GO:0003677,GO:0003887,GO:0006260 AT4G32700.2 TEB helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding Cre16.g677205 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 17 - - g16746.t2,Cre01.g067059.t2.1, g16746.t1,Cre01.g067059.t1.1,Cre01.g067059.t1.2, g16746.t3,Cre01.g067059.t3.1 PF00207 PTHR13062:SF1,PTHR13062 - - - GO:0004866 - - - Cre01.g034750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g784.t1 - - - - - - - - - Cre06.g302700 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g7008.t1 PF00560 PTHR24106:SF36,PTHR24106 KOG4308 - - GO:0005515 AT1G10510.1 emb2004 RNI-like superfamily protein Cre16.g677200 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 - - g16571.t1 - - - - - - - - - Cre03.g199000 PHT1,PHOT,PHOT1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - Phototropin Phototropin-like, blue light receptor [PMID: 12121468; independent sequence: AJ416556] Found in the flagellar proteome [PMID: 15998802]; LOV1 and LOV2 domains. Characterized by Lanzl et al. 2008 [PMID: 18330851] and by Kutta et al. [PMID: 18604833}; stud g4349.t1,Cre03.g199000.t1.1,PHT1,PHOT PF08447,PF00069 PTHR24351,PTHR24351:SF88 KOG0610 2.7.11.1 K08282 GO:0005515,GO:0004672,GO:0005524,GO:0006468 AT5G58140.1 NPL1,PHOT2 phototropin 2 Cre26.g756597 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g18289.t1,Cre59.g791850.t1.1,Cre59.g791850.t1.2 - - KOG4375 - - - - - - Cre06.g257250 BBS2 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 Bardet-Biedl syndrome-2 associated protein Protein similar to mammalian Bardet Biedl Syndrome 2; associated with flagella and basal bodies g5782.t1,BBS2 - - - - - - - - - Cre16.g682800 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g16446.t1,Cre16.g682800.t1.1 - - - - - - - - - Cre03.g179100 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated - - - g3707.t1,Cre03.g179100.t1.1 PF03152,PF00789 PTHR12555,PTHR12555:SF9 - - - GO:0006511,GO:0005515 AT4G15420.1 - Ubiquitin fusion degradation UFD1 family protein Cre12.g545550 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 9 - - g13648.t2, g13648.t1,Cre12.g545550.t1.1 - - - - - - - - - Cre06.g279550 - 0 1 1.0 nan 0 1 1.0 nan C n - 5 - - g6500.t1 PF00226 PTHR24078 - - - GO:0031072 AT1G16680.1 - Chaperone DnaJ-domain superfamily protein Cre09.g395917 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 7 - - g9822.t1,Cre02.g132550.t1.1,Cre02.g132550.t1.2 PF00583 PTHR13947 - - - GO:0008080,GO:0008152 - - - Cre07.g313206 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g7250.t2, g7250.t1 PF00271,PF00270 PTHR14074 - - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT5G20320.1 ATDCL4,DCL4 dicer-like 4 Cre36.g759747 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 14 - - g18368.t1 - - - - - - - - - Cre09.g393543 HCP2 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 11 Hybrid-cluster protein Prismane/CO dehydrogenase family g9757.t1,Cre02.g129550.t1.1,Cre02.g129550.t1.2,HCP2 PF03063 - - - - GO:0005737,GO:0016491,GO:0055114 - - - Cre16.g659700 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 11 - - g15936.t1,Cre16.g659700.t1.1 - - - - - - - - - Cre01.g036250 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 17 - - g815.t1,Cre01.g036250.t1.1 PF00069 PTHR24349:SF67,PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT5G39440.1 SnRK1.3 SNF1-related protein kinase 1.3 Cre12.g519500 VCX1,CAX1 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 13 CAX family cation antiporter, membrane protein Putative Ca2+/H+ antiporter [PMID: 15710683], related to fungi and plants Ca2+/H+ antiporters (CAX); related to yeast VCX1 (or Manganese resistance 1). Also known as VCX1 g12804.t1,Cre12.g519500.t1.1,CAX1,VCX1 PF01699 - KOG1397 - K07300 GO:0016021,GO:0055085 AT3G13320.1 atcax2,CAX2 cation exchanger 2 Cre03.g181200 - 0 5 1.0 1.0 0 5 1.0 1.0 M n downregulated 18 - - g3755.t1,Cre03.g181200.t1.1 PF01039 PTHR22855:SF13,PTHR22855 KOG0540 6.4.1.4 K01969 GO:0016874 AT4G34030.1 MCCB 3-methylcrotonyl-CoA carboxylase Cre08.g380850 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g8962.t1,Cre08.g380850.t1.1 - - - - - - - - - Cre06.g268650 FAP279 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g6027.t2, g6027.t1 PF00560 PTHR10588,PTHR10588:SF29 - - - GO:0005515 AT1G09760.1 U2A\' U2 small nuclear ribonucleoprotein A Cre02.g103784 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g2122.t1,Cre02.g103784.t1.1 - - - - - - - - - Cre07.g338750 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7880.t1, g7880.t2, g7880.t3 - - - - - - - - - Cre02.g147150 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 10 - - g2517.t1 - - - - - - - - - Cre04.g222300 SRS3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g4851.t1,SRS3 PF01805 PTHR12323 - - - GO:0003723,GO:0006396 AT4G31200.1 - SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein Cre08.g362000 FAP72 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 16 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g8476.t1,Cre08.g362000.t1.1 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre10.g426600 CYP27,CYP739A6 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 7 Cytochrome P450, CYP213 superfamily Cytochrome P450, CYP213 superfamily. The CYP85 clan families CYP85 and CYP90 make brassinosteroid. in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols. Previously annotated as CYP739A6 g10540.t1,Cre10.g426600.t1.1,CYP27 PF00067 PTHR24286 KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT5G45340.1 CYP707A3 cytochrome P450, family 707, subfamily A, polypeptide 3 Cre06.g255250 - 0 1 1.0 nan 0 1 1.0 nan O Y - 9 - - g5737.t1 - - - - - - AT1G79200.1 - - Cre09.g413250 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 7 - - g10236.t1,Cre09.g413250.t1.1 PF05686 PTHR12203,PTHR12203:SF16 - - - - - - - Cre10.g421050 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g10420.t1 PF07699 - - - - - - - - Cre16.g669125 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g16251.t1 PF00465 PTHR11496:SF46,PTHR11496 - - - GO:0016491,GO:0046872,GO:0055114 - - - Cre13.g578750 TBA1 - 0 5 1.0 1.0 0 5 1.0 1.0 C n downregulated 11 PsbA translation factor Translation factor for chloroplast-encoded psbA gene; mutant has defect in translation of D1, PSII reaction center protein; chloroplast targeted; related to dehydrogenases g14218.t1,Cre13.g578750.t1.1,TBA1 PF01180 PTHR11938:SF15,PTHR11938 KOG1799 1.3.1.2 K00207 GO:0004152,GO:0006222,GO:0055114 AT3G17810.1 PYD1 pyrimidine 1 Cre09.g402219 LCI3 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - Low-CO2-inducible protein Regulated by CCM1 [PMID: 15235119]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145]. g10012.t2,Cre02.g139950.t2.1,LCI3, g10012.t1,Cre02.g139950.t1.1,Cre02.g139950.t1.2,LCI3 - - - - - - - - - Cre06.g278209 PRL8 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 15 Predicted extracellular protein Similar to pathogenesis-related protein 1, extracellular g6351.t1,Cre13.g598700.t2.1,PRL8, g6351.t2,Cre13.g598700.t1.1,PRL8 PF00188 PTHR10334 KOG3017 - - - AT4G33730.1 - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Cre06.g278205 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g6347.t1,Cre13.g598500.t1.1,Cre13.g598500.t1.2 PF00400 - - - - - AT2G16405.1 - Transducin/WD40 repeat-like superfamily protein Cre06.g278204 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 4 - - g6346.t1,Cre13.g598450.t1.1 PF00188 PTHR10334,PTHR10334:SF7 - - - - AT2G14580.1 ATPRB1,PRB1 basic pathogenesis-related protein 1 Cre06.g278206 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g6348.t1,Cre13.g598550.t1.1,Cre13.g598550.t1.2 - - - - - - - - - Cre06.g278200 ROC66 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g6470.t1,ROC66 PF06203 - KOG0811 - - GO:0005515 AT5G24930.1 ATCOL4,COL4 CONSTANS-like 4 Cre06.g278202 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 7 - - g6344.t1,Cre13.g598350.t1.1,Cre13.g598350.t1.2 PF00459 PTHR20854:SF4,PTHR20854 KOG2951 3.1.3.-,3.1.3.25 K10047 GO:0004437 AT3G02870.3 VTC4 Inositol monophosphatase family protein Cre03.g144364 - 0 1 1.0 nan 0 1 1.0 nan O n - 3 - - g2882.t1,Cre01.g057150.t1.1 PF00514 - - - - GO:0005515 - - - Cre12.g492900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g12092.t1 PF01661 PTHR11106 - - - - AT2G40600.1 - appr-1-p processing enzyme family protein Cre11.g467623 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 14 - - g11554.t1,Cre18.g747450.t1.1, g11554.t2,Cre18.g747450.t2.1 - - - - - - - - - Cre11.g467624 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 11 - - g11555.t1,Cre18.g747400.t1.1 - - - - - - - - - Cre11.g467627 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - - Cytochrome P450, CYP120 superfamily Cytochrome P450, CYP120 superfamily. The CYP85 clan families CYP85 and CYP90 make brassinosteroids in higher plants. The CYP737-740 families in Chlamydomonas may metabolize sterols. Previously annotated as CYP737A1 g11557.t1,Cre18.g747300.t1.1,Cre18.g747300.t1.2 PF00067 PTHR24286 KOG0157 - - GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT1G05160.1 ATKAO1,CYP88A3,KAO1 cytochrome P450, family 88, subfamily A, polypeptide 3 Cre11.g467626 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - - - - g11556.t1,Cre18.g747350.t1.1 PF00069 PTHR23257:SF357,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre17.g708000 FAP260 - 0 13 1.0 1.0 0 13 1.0 1.0 C n - 16 Flagellar Associated Protein, membrane-associated Flagellar Associated Protein with PAS sensory domain, found in the flagellar proteome [PMID: 15998802] g17151.t1 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre17.g703050 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 3 - - g17043.t1,Cre17.g703050.t1.1 - - - - - - - - - Cre03.g176900 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 16 - - g3656.t1, g3656.t2 PF01344 PTHR23244:SF128,PTHR23244 - - - GO:0005515 AT4G04670.1 - Met-10+ like family protein / kelch repeat-containing protein Cre16.g676981 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g16744.t1,Cre01.g067000.t1.1 - - - - - - AT3G16000.1 MFP1 MAR binding filament-like protein 1 Cre01.g000750 ZFR2 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 15 - - g18.t1,ZFR2 - - KOG3879 - - - AT4G24204.3 - RING/U-box superfamily protein Cre01.g023850 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g551.t1 - - - - - - - - - Cre19.g750597 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 17 - - g18129.t1,Cre33.g782750.t1.1 PF00069,PF00036 PTHR24349 KOG0032 2.7.1.-,2.7.11.1 K00924,K13412 GO:0004672,GO:0005524,GO:0006468 AT4G35310.1 ATCPK5,CPK5 calmodulin-domain protein kinase 5 Cre01.g039800 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g889.t1 - - - - - - - - - Cre17.g741250 PHR1 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 13 FO synthase; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase Member of the Radical SAM superfamily. Enzyme has not been officially assigned an enzyme commission number, but falls under this category EC 2.5.1.-. Euryarchae FO is synthesized by two proteins encoded by separate genes called cofG and cofH (cof = coen g17928.t1,PHR1 PF04055 PTHR22976:SF4,PTHR22976 - - - GO:0003824,GO:0051536 - - - Cre03.g145107 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g2919.t1,Cre01.g058350.t1.1,Cre01.g058350.t1.2 PF00225 PTHR24115,PTHR24115:SF171 KOG0239 - K10406 GO:0003777,GO:0005524,GO:0007018 AT2G22610.1 - Di-glucose binding protein with Kinesin motor domain Cre12.g487150 PGM20 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 - - g12246.t1,PGM20 PF00300 PTHR23029 KOG4754 - - - AT1G09935.1 - Phosphoglycerate mutase family protein Cre03.g205650 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 9 - - g4199.t1,Cre03.g205650.t1.1 PF00627 PTHR12948,PTHR12948:SF1 KOG2561 - - GO:0005515 AT2G12550.1 - ubiquitin-associated (UBA)/TS-N domain-containing protein Cre16.g650950 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g15748.t1 PF01931 - - - - - - - - Cre14.g634000 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g15287.t1 - - - - - - - - - Cre12.g552402 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 - - g13812.t1,Cre27.g775300.t1.1 - - - - - - - - - Cre10.g455100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g11169.t1 PF04832 PTHR11220,PTHR11220:SF14 - - - - AT5G20140.1 - SOUL heme-binding family protein Cre13.g606974 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g14635.t1 - - - - - - - - - Cre12.g524150 POLI2,POLH2 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 DNA polymerase eta Homologous to eukaryotic DNA polymerase eta; Xeroderma pigmentosum complementation group Variant (XPV); Rad30; Chlamydomonas has at least two homologues of Rad30. Previously annotated incorrectly as POLI2, but this conflicts with DNA polymerase iota, and g12906.t2,POLH2,POLI2, g12906.t1,POLH2,POLI2 PF00817,PF11799 PTHR11076:SF11,PTHR11076 KOG3227 2.7.7.7 K03509 GO:0003684,GO:0003887,GO:0006281 AT5G44740.2 POLH Y-family DNA polymerase H Cre12.g542350 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g13725.t1,Cre12.g542350.t1.1 PF00582 - - - - GO:0006950 AT1G11360.1 - Adenine nucleotide alpha hydrolases-like superfamily protein Cre02.g095086 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 5 - - g1860.t1 - PTHR18640,PTHR18640:SF5 - - K14347 - AT3G56160.1 - Sodium Bile acid symporter family Cre02.g095087 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 5 Cysteine endopeptidase Cysteine-type endopeptidase, papain type. Partial sequence similar to Volvox carteri clone B cysteine protease; belongs to the peptidase C1 family; [PMID:9596636]. Previously annotated as CPR1 g1861.t1,Cre11.g471950.t1.1,Cre11.g471950.t1.2 PF00112 PTHR12411:SF148,PTHR12411 - - - GO:0006508,GO:0008234 AT5G50260.1 - Cysteine proteinases superfamily protein Cre02.g095081 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 8 - - g1855.t2,Cre11.g471750.t1.1,Cre11.g471750.t1.2, g1855.t1,Cre11.g471750.t2.1 PF09295 - - - - - - - - Cre02.g095082 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g1856.t1,Cre11.g471800.t1.1 PF00956 PTHR11875,PTHR11875:SF19 - - - GO:0005634,GO:0006334 AT2G19480.3 NAP1;2,NFA02,NFA2 nucleosome assembly protein 1;2 Cre02.g095083 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g1857.t1,Cre11.g471850.t1.1,Cre11.g471850.t1.2 - - - - - - - - - Cre10.g450550 PAO3 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 5 Pheophorbide a oxygenase, Rieske iron-sulfur cluster protein Pheophorbide a oxygenase (PAO), chloroplast precursor. Accelerated cell death protein (ACD1); similar to chlorophyllide a oxygenase; cell death suppressor protein (Lls1) [PMID: 15159633] g11072.t1,PAO3 PF08417,PF00355 PTHR21266,PTHR21266:SF3 - - - GO:0010277,GO:0055114,GO:0016491,GO:0051537 AT3G44880.1 ACD1,LLS1,PAO Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain Cre02.g095089 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g1863.t1,Cre11.g472000.t1.1,Cre11.g472000.t1.2 PF01725 PTHR11067 KOG3222 3.6.1.19 K01519 GO:0016787 AT4G13720.1 - Inosine triphosphate pyrophosphatase family protein Cre03.g177053 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 7 - - g3660.t1 PF08623 PTHR12696 KOG1824 - - - AT2G02560.2 ATCAND1,CAND1,ETA2,HVE,TIP120 cullin-associated and neddylation dissociated Cre12.g488351 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 3 - - g12219.t1 PF07699 - - - - - - - - Cre12.g488350 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 16 - - g12218.t1 PF03055 PTHR10543,PTHR10543:SF1 KOG1285 - - - AT4G19170.1 CCD4,NCED4 nine-cis-epoxycarotenoid dioxygenase 4 Cre16.g684400 - 0 5 1.0 1.0 0 5 1.0 1.0 O n downregulated 17 - - g16410.t1, g16410.t2 PF00069 PTHR24055:SF151,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT3G18040.1 MPK9 MAP kinase 9 Cre16.g670800 TFC1 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g16303.t1,Cre16.g670800.t1.1,TFC1 PF02970 PTHR21500 KOG3470 - - GO:0005874,GO:0007021,GO:0051082 AT2G30410.1 KIS,TFCA tubulin folding cofactor A (KIESEL) Cre14.g625802 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 - - g15074.t1 - PTHR23163 - 6.3.2.19 K10696 - AT1G55250.1 HUB2 histone mono-ubiquitination 2 Cre01.g013800 SXD1,TCY1 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g337.t1,SXD1,TCY1 PF00098 PTHR23002 - - K09250 GO:0003676,GO:0008270 AT3G43590.1 - zinc knuckle (CCHC-type) family protein Cre09.g394139 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9774.t1,Cre02.g130250.t1.1 - - - - - - - - - Cre12.g508650 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 - - g12380.t1 PF02010 - - - - - - - - Cre17.g736300 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - - - - g17809.t1 - - - - - - - - - Cre16.g680230 SEC61G - 0 1 1.0 nan 0 1 1.0 nan O n - 10 SEC61-gamma subunit or ER translocon Expressed Protein. Conserved protein similar to SEC61 gamma subunit involved in ER protein translocation. Early zygote expressed protein activated upon fus mating [PMID: 18487630] g16775.t1,Cre01.g068150.t1.1,Cre01.g068150.t1.2,SEC61G PF00584 PTHR12309 KOG3498 - K07342 GO:0006605,GO:0006886,GO:0016020 AT4G24920.1 - secE/sec61-gamma protein transport protein Cre16.g680232 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 - - g16143.t1,Cre01.g064050.t1.1 PF06294 PTHR12509,PTHR12509:SF8 - - - - - - - Cre09.g401293 SUL3 - 0 11 1.0 1.0 0 11 1.0 1.0 C n - 8 Sulfate transporter Sulfate transporter. Previously annotated as SULTR3 g9987.t1,Cre02.g138950.t1.1,Cre02.g138950.t1.2,SUL3 PF01740,PF00581,PF00916 PTHR11814,PTHR11814:SF47 - - - GO:0005215,GO:0006810,GO:0016021,GO:0055085 AT5G13550.1 SULTR4;1 sulfate transporter 4.1 Cre17.g720750 TRF4 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 Trf4 poly(A) polymerase Sequence similarity to trf4P (part of TRAMP complex) in yeast, a poly(A) polymerase involved in mRNA decay. Previously annotated as TRF4 g17443.t1,Cre17.g720750.t1.1,TRF4 PF03828,PF01909 PTHR23092,PTHR23092:SF17 - - - GO:0016779 AT5G53770.1 - Nucleotidyltransferase family protein Cre06.g281050 VPS5A - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 Subunit of Retromer complex Expressed Protein. Similar to VPS5/SNX1, component of Retromer Coat complex involved in endosomal to Golgi trafficking. g6536.t1,Cre06.g281050.t1.1,VPS5A PF00787,PF09325 PTHR10555:SF73,PTHR10555 KOG2273 - - GO:0005515,GO:0007154,GO:0035091 AT5G06140.1 ATSNX1,SNX1 sorting nexin 1 Cre09.g389700 MFT24 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 17 - - g9503.t1,Cre09.g389700.t1.1,MFT24 PF07690 PTHR24003,PTHR24003:SF303 - - - GO:0016021,GO:0055085 - - - Cre02.g090900 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g1699.t2, g1699.t1 PF00153 PTHR24089:SF139,PTHR24089 KOG0758, KOG0760 - - - AT1G07030.1, AT5G15640.1 - Mitochondrial substrate carrier family protein Cre12.g547727 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g13801.t2,Cre27.g774850.t2.1, g13801.t1,Cre27.g774850.t1.1 - - - - - - - - - Cre03.g172100 PDF1A - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g3547.t1,Cre03.g172100.t1.1 PF01327 PTHR10458 - 3.5.1.88 K01462 GO:0005506,GO:0006412,GO:0042586 AT1G15390.1 ATDEF1,PDF1A peptide deformylase 1A Cre02.g105200 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 15 - - g2156.t1,Cre02.g105200.t1.1 PF03489,PF05184 PTHR11480:SF22,PTHR11480 KOG1340 - - GO:0006629 AT3G51730.1 - saposin B domain-containing protein Cre13.g576500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g14167.t1 - - - - - - AT1G48380.1 HYP7,RHL1 root hair initiation protein root hairless 1 (RHL1) Cre13.g602950 - 0 10 1.0 1.0 0 10 1.0 1.0 C n - 8 - - g14541.t2, g14541.t1 - - - - - - - - - Cre12.g543400 FDH1 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Formaldehyde dehydrogenase Formaldehyde dehydrogenase, glutathione-dependent, zinc-containing alcohol dehydrogenase class III; found in the flagellar proteome [PMID: 15998802] g13701.t1,Cre12.g543400.t1.1,FDH1 PF08240,PF00107 PTHR11695,PTHR11695:SF4 KOG0022 1.1.1.1,1.1.1.284 K00121 GO:0008270,GO:0016491,GO:0055114 AT5G43940.1 ADH2,ATGSNOR1,GSNOR,HOT5,PAR2 GroES-like zinc-binding dehydrogenase family protein Cre06.g298850 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 2 - - g6913.t1,Cre06.g298850.t1.1 - - - - - - - - - Cre03.g208609 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g4444.t1,Cre19.g755350.t1.1 - - - - - - - - - Cre01.g020000 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 12 - - g465.t1 - - - - - - - - - Cre12.g515950 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 4 - - g12728.t1,Cre12.g515950.t1.1 - - - - - - - - - Cre06.g275200 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 10 - - g6171.t1 - - - - - - - - - Cre15.g641100 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 16 - - g15456.t1 PF07714 PTHR23257:SF325,PTHR23257 KOG0032 - - GO:0004672,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre16.g649300 - 0 1 1.0 nan 0 1 1.0 nan SP n - 2 - - g15711.t1,Cre16.g649300.t1.1 - - - - - - - - - Cre11.g481313 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 18 - - g11951.t1,Cre11.g481313.t1.1 - - - - - - - - - Cre10.g457550 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g11225.t1,Cre10.g457550.t1.1 PF00400 PTHR11227,PTHR11227:SF17 KOG2110 - - - AT4G30510.1 ATATG18B,ATG18B,G18B homolog of yeast autophagy 18 (ATG18) B Cre16.g653934 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g15812.t1, g15812.t2 - - - - - - - - - Cre03.g167250 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 10 - - g3433.t1,Cre03.g167250.t1.1 PF05673 - - - - - - - - Cre14.g627400 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g15107.t1 - PTHR13146 - - - - - - - Cre10.g442050 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g10877.t1 - - KOG3544 - - - - - - Cre03.g159300 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g3262.t1 PF05255 PTHR13180 KOG3393 - - - AT1G36980.1 - - Cre12.g554200 VTI4,MEMB1 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 ER-Golgi Qb-SNARE, Memb/GS35/Bos1-family (Qb.II) ER-Golgi Qb-SNARE, Memb/GS35/Bos1-family (Qb.II). Expressed Protein. Class Qb.II SNARE, involved in ER/Golgi trafficking (PMID: 17596510). Previously annotated as MEMB1 g13449.t1,MEMB1,VTI4 PF12352 PTHR21230:SF1,PTHR21230 KOG3251 - K08496 - AT2G36900.1 ATMEMB11,MEMB11 membrin 11 Cre03.g162850 FAP292 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 12 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g3338.t1 - - - - - - - - - Cre05.g232400 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g5129.t1,Cre05.g232400.t1.1 - - - - - - - - - Cre12.g499550 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g12588.t2, g12588.t1,Cre12.g499550.t1.1 - - - - - - - - - Cre13.g562100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g13834.t1,Cre13.g562100.t1.1 - - - - - - - - - Cre02.g104150 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 10 - - g2131.t1 - - - - - - - - - Cre06.g281450 SRR22 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 16 Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g6546.t1,SRR22 PF00530 PTHR19331,PTHR19331:SF420 - - - GO:0005044,GO:0016020 - - - Cre03.g174350 PWR2 - 0 5 1.0 1.0 0 5 1.0 1.0 C n upregulated 4 Predicted PWR protein PWR motif protein; belongs to a family of 4 genes with no clear homologues in other organisms, except for a similarity with DUF506 proteins (plant-specific, unknown function). The family name comes from the perfectly conserved PWR motif shared between the g3597.t1,Cre03.g174350.t1.1,PWR2 PF04720 - - - - - AT3G54550.1 - Protein of unknown function (DUF506) Cre03.g206600 AAD1 - 0 1 1.0 nan 0 1 1.0 nan C n - 1 Acetohydroxyacid dehydratase Acetohydroxyacid dehydratase (EC 4.2.1.9); ILVD; dihydroxy-acid dehydrase; probable plastid location, based on homology and on Target-P prediction g4179.t1,Cre03.g206600.t1.1,AAD1 PF00920 PTHR21000 KOG2448 4.2.1.9 K01687 GO:0003824,GO:0008152 AT3G23940.1 - dehydratase family Cre06.g268900 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g6032.t1,Cre06.g268900.t1.1 - - - - - - - - - Cre03.g157900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g3232.t1 - - KOG0978 - - - - - - Cre08.g386100 CYP744A5P - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9084.t2, g9084.t3, g9084.t1 - - - - - - - - - Cre02.g098250 PPO3 - 0 4 1.0 1.0 0 4 1.0 1.0 C Y - 8 - - g1998.t1,Cre02.g098250.t1.1,PPO3 PF01243,PF10615 PTHR13343 KOG3374 - - GO:0010181 AT3G03890.1 - FMN binding Cre17.g721500 STA2,GBBSI,GBS1 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 5 Granule-bound starch synthase I Granule-bound starch synthase I, catalyses the transfer of the glucosyl moiety of the ADP-glucose to the non-reducing end of a pre-existing alpha 1,4 linked chain. (gi 8573760) (AAC17969); described by Wattebled et al. 2002 [PMID:12153578]. Low-CO2 induci g17456.t1,Cre17.g721500.t1.1,GBBSI,GBS1 PF00534,PF08323 PTHR12526,PTHR12526:SF17 - 2.4.1.242 K13679 GO:0009058 AT1G32900.1 - UDP-Glycosyltransferase superfamily protein Cre08.g372150 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - - - - g8717.t1,Cre08.g372150.t1.1 - - - - - - - - - Cre04.g219576 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g4785.t1 - - - - - - - - - Cre12.g512500 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g12296.t1 PF07962 PTHR13220:SF11,PTHR13220 - - - GO:0005634,GO:0006974,GO:0007049,GO:0048478 AT3G02820.1 - zinc knuckle (CCHC-type) family protein Cre17.g734300 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 - - g17754.t1, g17754.t2 PF04548 PTHR10903,PTHR10903:SF23 KOG4090 - - GO:0005525 AT3G16620.1 ATTOC120,TOC120 translocon outer complex protein 120 Cre01.g025983 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 15 - - g597.t1 PF07173 - - - - - AT4G37900.1 - Protein of unknown function (duplicated DUF1399) Cre16.g695900 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 14 - - g15550.t1 - - - - - - - - - Cre06.g249950 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g5598.t1 PF01504,PF02493 PTHR23086,PTHR23086:SF6 KOG0229 2.7.1.68 K00889 GO:0016307,GO:0046488 AT3G09920.1 PIP5K9 phosphatidyl inositol monophosphate 5 kinase Cre01.g053300 AIH1 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 2 Agmatine iminohydrolase Converts agmatin to N-carbamoyl-putrescine; involved in agmatine pathway of polyamine (putrescine) biosynthesis; could be organelle-targeted g1178.t1,AIH1 PF04371 - - - - - AT5G08170.1 ATAIH,EMB1873 porphyromonas-type peptidyl-arginine deiminase family protein Cre06.g294200 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g6811.t1 PF03120,PF01653 PTHR11107 - - - GO:0003911,GO:0006260,GO:0006281 - - - Cre03.g197650 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 4 - - g4094.t1,Cre03.g197650.t1.1 PF04755 - - - - GO:0005198,GO:0009507 AT3G23400.1 FIB4 Plastid-lipid associated protein PAP / fibrillin family protein Cre03.g155501 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g3171.t1,Cre03.g155501.t1.1 PF01925 - - - - GO:0016021 - - - Cre03.g155500 - 0 1 1.0 nan 0 1 1.0 nan - n - 5 - - g3170.t1 - - - - - - - - - Cre09.g408350 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g10120.t1,Cre09.g408350.t1.1 PF05903 - - - - - - - - Cre06.g286850 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 - - g6664.t1 PF08719 - - - K09935 - AT3G47390.2 PHS1 cytidine/deoxycytidylate deaminase family protein Cre12.g531700 ADA - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g13084.t1,ADA PF00962 PTHR11359 KOG1096 3.5.4.6 K01490 GO:0009168,GO:0019239 AT2G38280.1 ATAMPD,FAC1 AMP deaminase, putative / myoadenylate deaminase, putative Cre12.g528650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g13018.t1,Cre12.g528650.t1.1 - - - - - - - - - Cre06.g271450 - 0 10 1.0 1.0 0 10 1.0 1.0 M n - 15 - - g6091.t1 - - KOG4308 - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre06.g262350 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g5894.t1,Cre06.g262350.t1.1 PF01753 - - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre15.g637315 - 0 1 1.0 nan 0 1 1.0 nan M n - 17 - - g15371.t1 - - - - - - - - - Cre12.g503300 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 3 - - g12504.t1,Cre12.g503300.t1.1 PF00731,PF02222 PTHR23047:SF1,PTHR23047 KOG2835 4.1.1.21 K11808 GO:0004638,GO:0006189 AT2G37690.1 - phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative Cre04.g218850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g4770.t1,Cre04.g218850.t1.1 PF04427 PTHR22734 KOG2780 - - - AT4G01560.1 MEE49 Ribosomal RNA processing Brix domain protein Cre15.g643500 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 15 - - g15516.t1 - - - - - - - - - Cre15.g643503 - 0 6 1.0 1.0 0 6 1.0 1.0 C n downregulated 18 - - g15518.t1, g15518.t2 PF02992,PF00072,PF01036,PF02518,PF00211 PTHR24423 - - - GO:0000156,GO:0000160,GO:0006355,GO:0005216,GO:0006811,GO:0016020,GO:0005524,GO:0009190,GO:0016849,GO:0035556 AT2G17820.1 AHK1,ATHK1,HK1 histidine kinase 1 Cre02.g112150 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 15 - - g2308.t1,Cre02.g112150.t1.1 PF04916 PTHR12370 KOG3774 - - - - - - Cre10.g439550 - 0 1 1.0 nan 0 1 1.0 nan SP n upregulated 2 - - g10823.t1, g10823.t2 PF07534 PTHR23354,PTHR23354:SF37 - - - - AT4G39870.1 - TLD-domain containing nucleolar protein Cre13.g564500 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g13888.t1 PF00069 PTHR24349:SF13,PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT1G35670.1 ATCDPK2,ATCPK11,CDPK2,CPK11 calcium-dependent protein kinase 2 Cre10.g455350 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 13 - - g11175.t1,Cre10.g455350.t1.1 - - - - - - - - - Cre12.g556950 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g13389.t1,Cre12.g556950.t1.1 - - KOG4709 - - - - - - Cre07.g332550 PSL1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 Signal peptide peptidase, eukaryotic-type Contains YD and GxGD motifs typical of typical of A22 family aspartic proteases, presenilins/signal peptide peptidases; belongs to SPP type, cleaving only type II transmembrane helices (C-terminus towards cytosol); probably involved in clearance of signal g7736.t1,Cre07.g332550.t1.1,PSL1 PF04258 PTHR12174,PTHR12174:SF23 KOG2443 3.4.23.- K09595 GO:0004190,GO:0016021 AT2G03120.1 ATSPP,SPP signal peptide peptidase Cre08.g369976 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g8670.t1 - - - - - - - - - Cre17.g745697 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g18030.t1,Cre20.g759250.t1.1,Cre20.g759250.t1.2 PF07059 - - - - - AT5G45560.1 - Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein Cre12.g527450 CAM17 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g12993.t1,Cre12.g527450.t1.1,CAM17 PF00036 PTHR10891 KOG0027 - - - AT2G41100.1 ATCAL4,TCH3 Calcium-binding EF hand family protein Cre14.g613600 HSP70H - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 - - g14786.t2,HSP70H, g14786.t1,Cre14.g613600.t1.1,HSP70H PF00012 PTHR19375,PTHR19375:SF1 - - - GO:0005524 AT5G42020.1 BIP,BIP2 Heat shock protein 70 (Hsp 70) family protein Cre09.g402150 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g9221.t1 PF01872 PTHR11079:SF17,PTHR11079 - - - GO:0008703,GO:0009231 - - - Cre16.g681914 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g16790.t1,Cre01.g068900.t1.1 - - KOG2985 - - - - - - Cre08.g359800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g8427.t1,Cre08.g359800.t1.1 - - - - - - AT5G06590.1 - - Cre01.g002050 APT1 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n upregulated 5 - - g47.t1,APT1 PF00328 PTHR11567 KOG3720 - - GO:0003993 - - - Cre03.g167000 UBC3 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Ubiquitin-conjugating enzyme E2 - g3427.t1,Cre03.g167000.t1.1,UBC3 PF00179 PTHR24067:SF32,PTHR24067 KOG0424 - - GO:0016881 AT3G57870.1 AHUS5,ATSCE1,EMB1637,SCE1,SCE1A sumo conjugation enzyme 1 Cre17.g703550 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g17057.t1,Cre17.g703550.t1.1 - - - - - - - - - Cre02.g078300 GPX1,PHGPx1 - 0 1 1.0 nan 0 1 1.0 nan - n - 15 Glutathione peroxidase, selenoprotein Glutathione peroxidase. Contains a selenocysteine in position 75; most similar to plant homologues, which have a Cys at the corresponding position. Previously annotated as PHGPx1. This is the protein sequenced by Fu et al. 2002, accession AY051144 [PMI g1417.t1,PHGPx1 - PTHR11592 - - - GO:0004602,GO:0006979,GO:0055114 AT4G11600.1 ATGPX6,GPX6,LSC803,PHGPX glutathione peroxidase 6 Cre17.g728900 FSA1,TAL3 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - Transaldolase Putative fructose-6-P aldolase; similar to a novel class I aldolase from E coli (GI:418514); EC:2.2.1.-. Previously annotated as FSA1 g17617.t1,Cre17.g728900.t1.1,FSA1,TAL3 PF00923 PTHR10683 - - - GO:0005975 - - - Cre08.g360200 DUR3,DUR3A - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - - Urea active transporter Na+/solute symporter. Previously annotated as DUR3A g8435.t1,Cre08.g360200.t1.1,DUR3A PF00474 PTHR11819,PTHR11819:SF15 KOG2348 - - GO:0005215,GO:0006810,GO:0016020,GO:0055085 AT5G45380.1 ATDUR3,DUR3 solute:sodium symporters;urea transmembrane transporters Cre15.g635350 PRM4 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 4 - - g15322.t3,PRM4, g15322.t2,PRM4, g15322.t1,Cre15.g635350.t1.1,PRM4 PF06325 PTHR11006,PTHR11006:SF10 KOG1499 2.1.1.125 K05931 GO:0005737,GO:0006479,GO:0008276 AT3G06930.2 ATPRMT4B,PRMT4B protein arginine methyltransferase 4B Cre02.g119900 PCP1,CEP6 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 Cysteine endopeptidase Cysteine-type endopeptidase, papain type g2490.t1,Cre02.g119900.t1.1,CEP6,PCP1 PF00112 PTHR12411:SF14,PTHR12411 KOG1543 - - GO:0006508,GO:0008234 AT1G02305.1 - Cysteine proteinases superfamily protein Cre10.g462750 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 2 - - g11342.t1 PF00400 PTHR13729,PTHR13729:SF2 KOG1063 - K11374 - AT1G49540.2 ELP2 elongator protein 2 Cre07.g351750 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g8182.t1,Cre07.g351750.t1.1 PF05890 PTHR13028 KOG3080 - - - AT3G22660.1 - rRNA processing protein-related Cre01.g031700 FKM1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g716.t1,FKM1, g716.t3,FKM1, g716.t2,FKM1 - - - - - - - - - Cre12.g507350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g12415.t1,Cre12.g507350.t1.1, g12415.t2 - - - - - - - - - Cre02.g116100 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 17 - - g2403.t1 - - KOG4462 - - - - - - Cre03.g180100 UNG2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g3733.t1,Cre03.g180100.t1.1,UNG2 PF03167 PTHR12159:SF6,PTHR12159 - - - GO:0006281,GO:0016799 - - - Cre03.g145647 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 7 - - g2947.t1,Cre01.g059650.t1.1 - - - - - - - - - Cre02.g120350 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g2499.t1,Cre02.g120350.t1.1 PF00646 - - - - GO:0005515 - - - Cre04.g229776 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g5033.t1 - - - - - - - - - Cre03.g205350 EXN8 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g4206.t1,EXN8 PF01612 - - - - GO:0003676,GO:0005622,GO:0006139,GO:0008408 - - - Cre09.g390550 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 10 - - g9483.t2, g9483.t1 - - - - - - - - - Cre08.g379100 - 0 1 1.0 nan 0 1 1.0 nan SP n - 18 - - g8922.t1, g8922.t2 PF00013 PTHR10288,PTHR10288:SF53, PTHR10288:SF36,PTHR10288 - - - GO:0003723 AT5G04430.1 BTR1,BTR1L,BTR1S binding to TOMV RNA 1L (long form) Cre07.g324932 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g7506.t1 PF07714 PTHR26392 - - - GO:0004672,GO:0006468 AT4G38470.1 - ACT-like protein tyrosine kinase family protein Cre08.g372300 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 3 - - g8720.t1,Cre08.g372300.t1.1 PF00892 - - - - GO:0016020 - - - Cre06.g300850 - 0 10 1.0 1.0 0 10 1.0 1.0 O n upregulated 9 - - g6960.t1 PF05964,PF05965 PTHR22715 KOG2991 - - GO:0003677,GO:0005634 AT1G05830.1 ATX2,SDG30 trithorax-like protein 2 Cre12.g512750 TEF20 - 0 15 1.0 1.0 0 15 1.0 1.0 O n - 15 Notchless-like protein Notchless-like WD40 repeat-containing protein, chloroplast location proposed; present in thylakoid-enriched fraction based on mass spectrometric peptide identification. PMID:17078018 g12291.t1,TEF20, g12291.t2,TEF20 PF00400 PTHR22847:SF228,PTHR22847 KOG0271 - - - AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre10.g465400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g11404.t1,Cre10.g465400.t1.1 - PTHR13328 - - - - - - - Cre07.g349800 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g8138.t1,Cre07.g349800.t1.1 - - - - - - - - - Cre05.g238900 HEL25 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g5508.t1,HEL25 PF00271,PF00270 PTHR24031,PTHR24031:SF21 KOG0344 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT3G09720.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre16.g676421 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g16739.t1,Cre01.g066750.t1.1 PF06203,PF00072 PTHR26402:SF51,PTHR26402 - - K12127 GO:0005515,GO:0000156,GO:0000160,GO:0006355 AT5G61380.1 APRR1,AtTOC1,PRR1,TOC1 CCT motif -containing response regulator protein Cre07.g346350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g8058.t2,Cre07.g346350.t1.1, g8058.t1 PF00650 PTHR10174:SF78,PTHR10174 - - - - - - - Cre17.g717300 DSP - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g17363.t1,DSP PF00782 PTHR10159 - - - GO:0006470,GO:0008138 AT3G23610.3 DSPTP1 dual specificity protein phosphatase 1 Cre10.g438700 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g10805.t1 PF00400,PF04003 PTHR19853 KOG0306 - K14556 - AT3G21540.1 - transducin family protein / WD-40 repeat family protein Cre07.g354700 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 17 - - g8251.t1 - - - - - - - - - Cre17.g710650 PTK21 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g17209.t1,PTK21 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT5G11850.1 - Protein kinase superfamily protein Cre13.g573100 MAM3C - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - Protein putatively involved in mitochondrial biogenesis Contains a DUF21 transmembrane domain of unknown function and 2 CBS domains (found in Hemolysins and Mg2+/CO2 transporters CorB CorC); similarity to many Arabidopsis proteins and to yeast Mam3p (mitochondrial aberrant morphology), involved in mitochondria g14092.t1,MAM3C PF01595 PTHR12064 - - - - AT1G03270.1 - CBS domain-containing protein with a domain of unknown function (DUF21) Cre12.g548250 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g13586.t1, g13586.t2 PF00498 PTHR23308:SF24,PTHR23308 - 3.1.4.- K13216 GO:0005515 AT5G47790.1 - SMAD/FHA domain-containing protein Cre15.g643750 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g15505.t1,Cre15.g643750.t1.1 - - - - - - - - - Cre09.g403050 DSP6 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 10 Dual-specificity protein phosphatase Dual-specificity protein phosphatase; probably chloroplast targeted g9201.t1,DSP6 PF00782 PTHR10159 - - - GO:0006470,GO:0008138 AT3G10940.1 - dual specificity protein phosphatase (DsPTP1) family protein Cre06.g287300 COG9 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 7 - - g6674.t1,Cre06.g287300.t1.1,COG9 - - - - - - AT5G02620.1 ANK1,ATANK1 ankyrin-like1 Cre10.g417600 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 4 - - g10339.t1 - - - - - - - - - Cre13.g563500 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 5 - - g13866.t1 PF01011 - - - - - - - - Cre03.g149900 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g3049.t1 - - - - - - - - - Cre13.g566750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g13946.t1,Cre13.g566750.t1.1 - - - - - - AT1G23560.1 - Domain of unknown function (DUF220) Cre05.g243600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g5267.t1,Cre05.g243600.t1.1 PF09118 - - - - - AT3G57620.1 - glyoxal oxidase-related protein Cre03.g152500 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g3105.t1 PF00856 PTHR12197 - - - GO:0005515 AT2G17900.1 SDG37 SET domain group 37 Cre08.g376100 IPP6 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g8860.t1,Cre08.g376100.t1.1,IPP6 PF00459 PTHR20854:SF9,PTHR20854 KOG2951 - - GO:0004437 AT3G02870.2 VTC4 Inositol monophosphatase family protein Cre11.g477550 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 15 - - g11857.t1,Cre11.g477550.t1.1 - - - - - - - - - Cre17.g714150 KUP1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 Potassium ion uptake transporter Potassium ion uptake transporter. Linked to related KUP2 and KUP3 g17292.t1,KUP1 PF02705 - - - - GO:0015079,GO:0016020,GO:0071805 AT4G13420.1 ATHAK5,HAK5 high affinity K+ transporter 5 Cre09.g416300 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 16 - - g10303.t1 - - - - - - - - - Cre16.g686850 PTA4 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Proton/phosphate symporter Putative phosphate transporter homolog type A-4, similar to yeast Pho84 H+/Pi symporter; clusters with PTA2 and PTA3 on scaffold 14. g16355.t1,Cre16.g686850.t1.1,PTA4 PF00083 PTHR24064:SF16,PTHR24064 KOG0252 - - GO:0016021,GO:0022857,GO:0055085 AT5G43340.1 PHT1;6,PHT6 phosphate transporter 1;6 Cre09.g416309 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 - - g10304.t1 - - - - - - - - - Cre11.g482200 FBB9 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar/basal body protein Conserved protein found in ciliated organisms, unknown function; identified in the flagellar and basal body proteome [PMID: 15137946]; upregulated by deflagellation g11971.t1,Cre11.g482200.t1.1,FBB9 - - - - - - - - - Cre06.g256050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g5754.t1 PF00004 - - - - GO:0005524 AT4G27680.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre16.g685628 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g16384.t1,Cre16.g685628.t1.1 - - - - - - - - - Cre02.g104725 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g2143.t1,Cre02.g104729.t1.2 - - - - - - - - - Cre08.g369500 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g8657.t1,Cre08.g369500.t1.1 - - - - - - AT1G44414.1 - - Cre11.g467779 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 9 - - g11709.t1,Cre22.g762950.t1.1 PF02838,PF00728 PTHR22600 KOG2499 3.2.1.52 K12373 GO:0004563,GO:0005975,GO:0004553 AT1G05590.1 ATHEX3,HEXO2 beta-hexosaminidase 2 Cre01.g036850 PDY1 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 13 - - g827.t1,Cre01.g036850.t1.1,PDY1 PF01619 PTHR13914 KOG0186 1.5.99.8 K00318 GO:0004657,GO:0006537,GO:0006562,GO:0055114 AT5G38710.1 - Methylenetetrahydrofolate reductase family protein Cre16.g688450 FBB18,DAB2 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 11 Flagellar Basal Body protein Similar to C21orf59 (CTO59); identified in the Flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation g16162.t1,Cre16.g688450.t1.1,FBB18 PF11069 PTHR13238 - - - - - - - Cre17.g718300 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g17384.t1, g17384.t2 PF00097, PF00097,PF05495 PTHR21319 KOG1940 - K10144 GO:0008270 AT5G18650.1, AT3G62970.1 - zinc finger (C3HC4-type RING finger) family protein, CHY-type/CTCHY-type/RING-type Zinc finger protein Cre17.g705700 GGK1,PROB1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 10 Glutamate 5-kinase Gamma-glutamyl kinase (GK). Previously annotated as PROB1 g17103.t1,Cre17.g705700.t1.1,GGK1,PROB1 PF01472,PF00696 PTHR11063 KOG1154 - - GO:0003723,GO:0008652 AT3G55610.1 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 Cre12.g532700 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g13106.t1 - - - - - - AT5G26760.2 - - Cre03.g174650 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g3606.t1,Cre03.g174650.t1.1 - PTHR23257,PTHR23257:SF99 - - - - - - - Cre01.g005850 FAP23,CBA2 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 5 Cobalamin adenosyltransferase and Flagellar Associated Protein Cob(I)yrinic acid a,c-diamide adenosyltransferase; found in the flagellar proteome [PMID: 15998802]. Previously annotated as FAP23 g141.t1,Cre01.g005850.t1.1,CBA2 PF01923 PTHR12213 - 2.5.1.17 K00798 GO:0005524,GO:0008817,GO:0009236 - - - Cre17.g704251 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g17073.t1,Cre17.g704250.t1.2 - - - - - - - - - Cre11.g467350 ACO2 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 13 - - g11726.t1,Cre11.g467350.t1.1,ACO2 PF01756,PF02770 PTHR10909,PTHR10909:SF94 KOG0135 - - GO:0003997,GO:0005777,GO:0006635,GO:0055114,GO:0003995 AT1G06310.1 ACX6 acyl-CoA oxidase 6 Cre10.g460050 FLU - 0 2 1.0 1.0 0 2 1.0 1.0 C Y - 4 - - g11280.t1, g11280.t2 - PTHR10098 - - - - AT3G14110.3 FLU Tetratricopeptide repeat (TPR)-like superfamily protein Cre01.g034150 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 17 - - g770.t1 PF00999 PTHR10110:SF7,PTHR10110 KOG1965 - - GO:0006812,GO:0015299,GO:0016021,GO:0055085 AT1G14660.1 ATNHX8,NHX8 Na+/H+ exchanger 8 Cre13.g604400 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14581.t1,Cre13.g604400.t1.1 - - - - - - - - - Cre12.g495550 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g12132.t1,Cre12.g495550.t1.1 PF05186 - - - - - - - - Cre04.g212600 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 - - g4726.t1,Cre04.g212600.t1.1 - - - - - - - - - Cre11.g476200 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11828.t1,Cre11.g476200.t1.1 PF00642 PTHR12547:SF18,PTHR12547 - - - GO:0003676,GO:0008270 AT3G19360.1 - Zinc finger (CCCH-type) family protein Cre03.g192100 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g3976.t1 - - - - - - - - - Cre14.g633901 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g15283.t1 - - - - - - - - - Cre17.g742050 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g17946.t1,Cre17.g742050.t1.1 - - - - - - - - - Cre06.g251200 IFT43,MOT41 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Intraflagellar transport protein 43 Intraflagellar transport (IFT)-particle protein, complex A [PMID: 11062270]. identified by comparative genomics as being present only in organisms having motile cilia; this gene is in the location of Probe 2 used in PMID: 11805055. Previously annotated g5626.t1,Cre06.g251200.t1.1,MOT41 - - - - - - - - - Cre06.g271150 FAP74 - 0 9 1.0 1.0 0 9 1.0 1.0 O n downregulated 13 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g6083.t1 - PTHR22538 KOG1003 - - - - - - Cre11.g480200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g11922.t1 - - - - - - - - - Cre05.g248400 CAH4,mtCA1,MCA - 0 1 1.0 nan 0 1 1.0 nan M n - 6 Mitochondrial carbonic anhydrase, beta type Mitochondrial carbonic anhydrase, beta type. Probably regulated by CCM1 [PMID: 15235119]; Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145], identified in their table as MCA. The inorganic g5164.t1,Cre05.g248400.t1.1,CAH4,MCA,mtCA1 PF00484 PTHR11002,PTHR11002:SF1 KOG1578 4.2.1.1 K01673 GO:0004089,GO:0008270,GO:0015976 AT1G58180.2 ATBCA6,BCA6 beta carbonic anhydrase 6 Cre01.g023913 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 15 - - g553.t1,Cre01.g023913.t1.1 - - - - - - - - - Cre02.g089800 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g1677.t1 - - - - - - - - - Cre08.g364700 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8538.t2,Cre08.g364700.t1.1, g8538.t1 PF00076 PTHR12742 KOG1457 - - GO:0003676 AT3G21215.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre17.g715350 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g17317.t2,Cre17.g715350.t1.1, g17317.t1 PF01412 PTHR23180,PTHR23180:SF66 KOG0706 - K12493 GO:0008060,GO:0008270,GO:0032312 AT5G46750.1 AGD9 ARF-GAP domain 9 Cre11.g475150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g11804.t1,Cre11.g475150.t1.1 - - - - - - - - - Cre03.g172550 PRMT1,PRM1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 Protein-/Histone-arginine N-methyltransferase Protein-/Histone-arginine N-methyltransferase; protein arginine N-methyltransferase (ChromDB PRMT3401). Previously annotated as PRMT1. ChromoDB PRMT3401. Ribosomal L11 methyltransferase-like g3558.t1,Cre03.g172550.t1.1,PRM1 PF06325 PTHR11006,PTHR11006:SF36 KOG1499 2.1.1.- K11434 GO:0005737,GO:0006479,GO:0008276 AT4G29510.1 ATPRMT11,ATPRMT1B,PRMT11,PRMT1B arginine methyltransferase 11 Cre13.g586450 NAT31 - 0 9 1.0 1.0 0 9 1.0 1.0 C n upregulated 16 - - g14390.t1,NAT31, g14390.t2,Cre13.g586450.t1.1,NAT31 PF00583 - - - - GO:0008080,GO:0008152 - - - Cre03.g162200 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g3324.t1,Cre03.g162200.t1.1 - - - - - - - - - Cre05.g242179 GDP7 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g5311.t1,Cre05.g242150.t1.3,GDP7 PF03009 PTHR23344 - - - GO:0006071,GO:0008889 - - - Cre03.g163550 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g3353.t1,Cre03.g163550.t1.1 PF01965 PTHR11019,PTHR11019:SF30 - - - - - - - Cre05.g233900 APX4 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g5095.t1,Cre05.g233900.t1.1,APX4 PF00141 - - - - GO:0004601,GO:0006979,GO:0020037,GO:0055114 AT4G09010.1 APX4,TL29 ascorbate peroxidase 4 Cre13.g605750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g14609.t1,Cre13.g605750.t1.1 - - - - - - - - - Cre07.g318500 CYA8 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g7363.t1,CYA8 PF02797,PF08392 - - - - GO:0008415,GO:0006633,GO:0016020,GO:0016747 AT1G68530.1 CER6,CUT1,G2,KCS6,POP1 3-ketoacyl-CoA synthase 6 Cre13.g583250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g14319.t1 PF00400,PF11816 PTHR19862,PTHR19862:SF5 KOG0308 - - - AT3G05090.1 LRS1 Transducin/WD40 repeat-like superfamily protein Cre10.g429450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g10608.t1 - - - - - - - - - Cre13.g567500 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g13965.t1 - - - - - - - - - Cre17.g700050 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 15 - - g16978.t1 PF03547 - - - - GO:0016021,GO:0055085 - - - Cre04.g221770 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g4840.t1,Cre04.g221770.t1.1 PF00651 - - - - GO:0005515 - - - Cre02.g107950 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g2213.t1,Cre02.g107950.t1.1 - - - - - - - - - Cre10.g467050 DAP2,MOT48 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Dynein assembly protein Dynein assembly protein, cytoplasmic. Previously annotated as MOT48, identified by comparative genomics as being present only in organisms having motile (MOT) cilia. Identified as the gene behind the novel mutant, ida10, that lacks a subset of single-he g11445.t1,Cre10.g467050.t1.1,MOT48 PF08190 PTHR22997 - - - - - - - Cre05.g246552 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 4 - - g5204.t1 PF03109 PTHR10566,PTHR10566:SF10 - - - - AT3G24190.1 - Protein kinase superfamily protein Cre05.g246550 LAO3 - 0 4 1.0 1.0 0 4 1.0 1.0 C n downregulated 13 L-amino-acid oxidase Similar to LAO1, L-amino-acid oxidase catalytic subunit; possibly cytosolic g5202.t1,Cre05.g246550.t1.1,LAO3 - PTHR10742,PTHR10742:SF48 - - - - - - - Cre11.g468374 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g11758.t1,Cre43.g787600.t1.1,Cre43.g787600.t1.2 - - - - - - - - - Cre11.g468371 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g11757.t1 - - - - - - - - - Cre11.g481150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 18 - - g11947.t1 - - - - - - - - - Cre06.g273550 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 9 - - g6137.t1,Cre06.g273550.t1.1 - - - - - - - - - Cre02.g079300 VPS4 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 10 AAA-ATPase of VPS4/SKD1 family Expressed Protein. Similar to VPS4/SKD1 AAA-ATPase, involved in vacuolar protein transport g1448.t1,Cre02.g079300.t1.1,VPS4 PF04212,PF09336,PF00004 PTHR23074:SF3,PTHR23074 KOG0739 - K12196 GO:0005524 AT2G27600.1 ATSKD1,SKD1,VPS4 AAA-type ATPase family protein Cre03.g179600 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g3717.t1,Cre03.g179600.t1.1 - - - - - - - - - Cre07.g322900 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g7460.t1 PF01764 PTHR21493:SF25,PTHR21493 - 3.1.1.- K13806 GO:0004806,GO:0006629 AT1G05790.2 - lipase class 3 family protein Cre12.g488800 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 7 - - g12210.t1 - - - - - - - - - Cre01.g030700 PTK14 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 18 Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g695.t1,PTK14 PF07714 PTHR23257,PTHR23257:SF335 - - - GO:0004672,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre05.g232050 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g5138.t1 - - KOG1995 - - - - - - Cre12.g545850 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g13638.t1,Cre12.g545850.t1.1 PF00012 PTHR19375 - - - GO:0005524 AT5G09590.1 HSC70-5,MTHSC70-2 mitochondrial HSO70 2 Cre12.g487350 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g12242.t1,Cre12.g487350.t1.1 - - - - - - - - - Cre16.g670755 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 16 - - g16306.t1 - - - - - - - - - Cre16.g670756 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 16 - - g16307.t1 - - - - - - - - - Cre16.g670750 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g16304.t1,Cre16.g670750.t1.1 PF01814 - - - - - - - - Cre07.g324500 MMP22 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 5 - - g7496.t1,Cre07.g324500.t1.1,MMP22 PF05548 - - - - - - - - Cre12.g527918 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 15 - - g13002.t1,Cre12.g527918.t1.1 - - - - - - - - - Cre12.g486400 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 16 - - g12266.t1,Cre12.g486400.t1.1 PF00566 PTHR22957,PTHR22957:SF26 KOG4567 - - GO:0005097,GO:0005622,GO:0032313 AT2G30710.1 - Ypt/Rab-GAP domain of gyp1p superfamily protein Cre16.g690800 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g15670.t1 - - - - - - - - - Cre08.g360700 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g8447.t1 - - - - - - - - - Cre10.g451000 TRR1 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g11084.t1,Cre10.g451000.t1.1,TRR1 PF01702 PTHR11962 KOG3909 2.4.2.29 K00773 GO:0006400,GO:0008479,GO:0008616 - - - Cre06.g300139 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 15 - - g6942.t2,Cre06.g300139.t1.1,Cre06.g300121.t1.2, g6942.t3,Cre06.g300121.t3.1, g6942.t1,Cre06.g300121.t2.1 - - - - - - - - - Cre03.g166000 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g3407.t1 PF00023 - KOG0502 - - GO:0005515 AT3G12360.1 ITN1 Ankyrin repeat family protein Cre09.g390949 FAP140 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG4 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400] g9682.t1,Cre02.g126300.t1.1,Cre02.g126300.t1.2 - - - - - - - - - Cre02.g080600 BIP2 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n upregulated 2 - - g1473.t1,Cre02.g080600.t1.1,BIP2 PF00012 PTHR19375 KOG0100 - K09490 GO:0005524 AT5G42020.1 BIP,BIP2 Heat shock protein 70 (Hsp 70) family protein Cre09.g387986 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g9602.t2,Cre02.g122600.t1.1, g9602.t1,Cre02.g122600.t2.1 - - - - - - - - - Cre10.g427050 MNP1 - 0 1 1.0 nan 0 1 1.0 nan M n - - ATP-binding protein, MRP/NBP35 family Similar to bacterial MRP proteins. Predicted mitochondrial localization. MNP = MRP/NBP35-like P-loop NTPase g10551.t1,Cre10.g427050.t1.1,MNP1 PF09140,PF10609 PTHR23264,PTHR23264:SF4 KOG3022 - K03593 - AT4G19540.1 INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like Cre16.g682700 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g16448.t1,Cre16.g682700.t1.1 - - - - - - - - - Cre07.g343534 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g7991.t1 - PTHR23151:SF8,PTHR23151 - - - - - - - Cre01.g048150 HLA8 - 0 1 1.0 nan 0 1 1.0 nan C n - 6 Transcriptional co-activator/nuclease induced by high light Putative transcriptional co-activator. High light-induced nuclease, staphylococcal nuclease homolog. Thermonuclease family. Induced under high light condition [PMID: 12000678]. A part of post-transcriptional gene silencing machinery [PMID: 11782532]. Si g1070.t1,Cre01.g048150.t1.1 PF00565 - - - - GO:0003676,GO:0016788 AT2G40410.2 - Staphylococcal nuclease homologue Cre14.g614650 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14809.t1,Cre14.g614650.t1.1 PF00300 - - - - - - - - Cre08.g362700 SMM30 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n downregulated 1 - - g8494.t1,Cre08.g362700.t1.1,SMM30 PF08241 PTHR12176 KOG1271 - - GO:0008152,GO:0008168 AT3G60910.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre05.g237100 MOT52 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g5455.t1,Cre05.g237100.t1.1,MOT52 PF09398 PTHR15431:SF2,PTHR15431 - - - GO:0005813,GO:0034453 - - - Cre06.g310100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g7175.t1,Cre06.g310100.t1.1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G58640.1 - Mitogen activated protein kinase kinase kinase-related Cre02.g143858 - 0 1 1.0 nan 0 1 1.0 nan - n - 13 - - g2605.t1,Cre02.g143858.t1.1 - - - - - - - - - Cre14.g632350 FAP138 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g15237.t1 - PTHR23241 - - - - - - - Cre03.g178950 HEL17 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 - - g3704.t1,Cre03.g178950.t1.1,HEL17 PF00271,PF00270 PTHR13710 KOG0338 - - GO:0003676,GO:0004386,GO:0005524,GO:0006310,GO:0008026 AT3G05740.1 RECQI1 RECQ helicase l1 Cre02.g143850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g2606.t1 PF00514 PTHR10372,PTHR10372:SF4 - - - GO:0005515 AT2G23140.1 - RING/U-box superfamily protein with ARM repeat domain Cre03.g175351 LMR2 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g3620.t1,LMR2 PF01476 - - - - GO:0016998 - - - Cre03.g201301 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 15 - - g4298.t1,Cre03.g201301.t1.1 - - - - - - - - - Cre13.g587550 - 0 21 1.0 1.0 0 21 1.0 1.0 C n downregulated 16 - - g14414.t2, g14414.t1 PF00989 PTHR10919:SF179,PTHR10919 - - - GO:0006355 - - - Cre03.g174400 CDO1 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 12 Cysteine dioxygenase - g3598.t1,Cre03.g174400.t1.1,CDO1 PF05995 PTHR12918 KOG4064 1.13.11.20 K00456 GO:0005506,GO:0017172,GO:0046439,GO:0055114 - - - Cre03.g201900 RSP1 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 12 Radial spoke protein 1 Flagellar protein, a subunit in the radial spoke head; C-terminus contains repeats of MORN motifs found in several membrane associated proteins [PMID: 16507594; GI:83284723] g4284.t1 PF02493 PTHR23084,PTHR23084:SF102 - - - - AT3G07960.1 - Phosphatidylinositol-4-phosphate 5-kinase family protein Cre06.g264950 HTA13,HTA12 - 0 1 1.0 nan 0 1 1.0 nan C n - - Histone H2A Replication-linked Histone H2A. Also annotated as HTA13 g5951.t1,Cre06.g264950.t1.1,HTA12,HTA13 PF00125 PTHR23430 KOG1756 - K11251 GO:0003677 AT1G51060.1 HTA10 histone H2A 10 Cre10.g418050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g10352.t1,Cre10.g418050.t1.1 - - - - - - - - - Cre04.g215400 AKC3 - 0 15 1.0 1.0 0 15 1.0 1.0 C Y upregulated 5 ABC1/COQ8 ser/thr kinase Conserved expressed protein related to ABC1/COQ8 mitochondrial putative ser/thr kinase. ABC1 kinase family protein of unknown function; similar to EYE3 (required for eyespot assembly); Arabidopsis homolog is predicted to be plastid-localized g4664.t1,Cre04.g215400.t1.1 PF03109 PTHR10566,PTHR10566:SF10 KOG1235 - K08869 - AT3G24190.1 - Protein kinase superfamily protein Cre06.g278500 TMG3 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g6476.t1,TMG3 PF01746 PTHR13563 KOG2967 - - - AT5G47680.1 - - Cre04.g220800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g4819.t1 - - - - - - - - - Cre16.g689087 - 0 1 1.0 nan 0 1 1.0 nan O Y - 8 - - g16854.t1,Cre01.g071650.t1.1 PF02453 PTHR10994:SF41,PTHR10994 KOG1792 - - GO:0005783 AT4G23630.1 BTI1,RTNLB1 VIRB2-interacting protein 1 Cre17.g724000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g17510.t1 - - - - - - - - - Cre17.g730350 - 0 1 1.0 nan 0 1 1.0 nan SP n - 15 - - g17649.t1,Cre17.g730350.t1.1 - - - - - - - - - Cre03.g206481 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g4425.t1,Cre19.g754550.t1.1 PF00097 - - - - - - - - Cre17.g731001 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g17665.t1,Cre17.g731000.t1.3 - - - - - - - - - Cre12.g550300 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 11 - - g13542.t1, g13542.t2 PF00069 PTHR24361:SF72,PTHR24361 KOG0582 - - GO:0004672,GO:0005524,GO:0006468 AT5G14720.1 - Protein kinase superfamily protein Cre12.g555150 NUOB10 - 0 1 1.0 nan 0 1 1.0 nan O n - - NADH:ubiquinone oxidoreductase 17.8 kDa subunit Mitochondrial NADH:ubiquinone oxidoreductase (Complex I) 17.8 kDa subunit precursor, homolog to bovine PDSW (PDSW/NDUFB10/NUO12.3)gi|33943529|gb|AAQ55459.1| [PMID: 15450959; PMID: 15710684] g13429.t1,Cre12.g555150.t1.1 - - - - - - - - - Cre02.g146900 OPR14 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 6 - - g2522.t1 - - - - - - - - - Cre01.g004300 ASNS,ASN1 - 0 1 1.0 nan 0 1 1.0 nan C n - 2 Asparagine synthase Asparagine synthase (glutamine-hydrolyzing). Previously annotated as ASNS g106.t1,Cre01.g004300.t1.1,ASNS PF00733 PTHR11772 KOG0571 6.3.5.4 K01953 GO:0004066,GO:0006529 AT3G47340.1 ASN1,AT-ASN1,DIN6 glutamine-dependent asparagine synthase 1 Cre17.g698150 CYCR4 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 5 - - g16931.t1,CYCR4 PF00134,PF02984 - - - - GO:0005634 AT1G47230.2 CYCA3;4 CYCLIN A3;4 Cre16.g665100 CAV3 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - - Voltage-gated Ca2+ channel, alpha subunit Voltage-dependent 4-domain calcium channel, alpha subunit g16054.t1,CAV3 PF00520 PTHR10037:SF138,PTHR10037 KOG2301 - K04838 GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G03560.1 ATCCH1,ATTPC1,FOU2,TPC1 two-pore channel 1 Cre02.g082050 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g1503.t1 PF04502 PTHR12111 KOG2990 - K13115 - AT1G25682.1 - Family of unknown function (DUF572) Cre13.g586600 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 - - g14393.t1,Cre13.g586600.t1.1 PF03188 PTHR10106,PTHR10106:SF0 KOG1619 - K08360 GO:0016021 AT5G38630.1 ACYB-1,CYB-1 cytochrome B561-1 Cre09.g396451 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - - - - g9359.t1 PF09118 - - - - - AT5G19580.1 - glyoxal oxidase-related protein Cre07.g326100 - 0 1 1.0 nan 0 1 1.0 nan C n - 9 - - g7584.t1,Cre07.g326100.t1.1, g7584.t2 - - - - - - - - - Cre02.g116900 HDP1,SETB - 0 1 1.0 nan 0 1 1.0 nan M n - - Homolog of small hydrophilic plant seed proteins Homolog of small hydrophilic plant seed proteins. May play a role in water retention, water uptake, and prevention of denaturation of cytoplasmic components. Related to hydrophilin superfamily g2420.t2,Cre02.g116900.t1.1,HDP1,SETB, g2420.t1,HDP1,SETB PF00477 - - - - - AT3G51810.1 AT3,ATEM1,EM1,GEA1 Stress induced protein Cre09.g389912 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 7 - - g9654.t1,Cre02.g125100.t1.1,Cre02.g125100.t1.2 PF08324,PF00400,PF09070 PTHR19849 KOG0301 - K14018 - AT3G18860.1 - transducin family protein / WD-40 repeat family protein Cre01.g034700 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g783.t1 - - - - - - - - - Cre17.g708700 HTR20 - 0 1 1.0 nan 0 1 1.0 nan C n - - Histone H3 Replication-linked Histone H3 g17169.t1,Cre17.g708700.t1.1,HTR20 PF00125 PTHR11426 KOG1745 - K11253 GO:0003677,GO:0000786,GO:0006334 AT4G40030.2 - Histone superfamily protein Cre03.g171150 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g3526.t1 - - - - - - - - - Cre16.g685000 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 12 - - g16398.t1,Cre16.g685000.t1.1 PF07683 PTHR13748,PTHR13748:SF18 - - - - AT1G80480.1 PTAC17 plastid transcriptionally active 17 Cre07.g327850 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g7626.t1 - - - - - - - - - Cre16.g695650 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g15555.t1 - - - - - - - - - Cre12.g518550 FAP54 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 13 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation g12786.t1 - - - - - - - - - Cre03.g210737 - 0 1 1.0 nan 0 1 1.0 nan SP n - 6 - - g4465.t1,Cre19.g756200.t1.1 - - - - - - - - - Cre12.g484800 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g12032.t1 PF00069 PTHR23257:SF325,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre13.g569400 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 4 - - g14011.t1,Cre13.g569400.t1.1 PF02668 PTHR10696 - - - GO:0016491,GO:0055114 - - - Cre03.g202339 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g4274.t1,Cre03.g202339.t1.1 - - - - - - - - - Cre12.g553650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g13461.t1, g13461.t2 PF01323 - - - - GO:0015035,GO:0030288 AT5G38900.1 - Thioredoxin superfamily protein Cre03.g202337 MOT28 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g4387.t1,Cre19.g752850.t1.1,MOT28 - - - - - - - - - Cre03.g145807 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 10 - - g2955.t1,Cre01.g060050.t1.1 - PTHR11584:SF274,PTHR11584 - - - - - - - Cre04.g224002 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g4888.t1 PF08241,PF03171 PTHR13069:SF5,PTHR13069 KOG3200 - - GO:0008152,GO:0008168,GO:0016491 AT1G31600.1 - RNA-binding (RRM/RBD/RNP motifs) family protein Cre10.g455800 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 - - g11185.t2, g11185.t1 - - - - - - - - - Cre08.g361551 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g8465.t1,Cre08.g361550.t1.3 - - - - - - - - - Cre04.g228550 - 0 12 1.0 1.0 0 12 1.0 1.0 M n - 16 - - g5000.t1 - - - - - - - - - Cre12.g528850 DLX1,DLC3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 Flagellar outer dynein arm 16 kDa light chain, LC3 Thioredoxin-like outer dynein arm light chain 3, LC3. Previously annotated as DLC3 g13022.t1,DLC3 PF00085 PTHR10438:SF48,PTHR10438 KOG0907 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT3G08710.1 ATH9,TH9,TRX H9 thioredoxin H-type 9 Cre14.g625100 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g15058.t1,Cre14.g625100.t1.1 - - - - - - - - - Cre02.g096250 FMO9 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 9 Flavin-containing monooxygenase Flavin-containing monooxygenase. This family includes diverse enzymes that utilise FAD - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism/Energy production and conversion - this gene is about 20 kb aw g1954.t1,Cre02.g096250.t1.1,FMO9 PF01494 PTHR13789,PTHR13789:SF67 KOG2614 - - GO:0004497,GO:0055114 AT5G11330.1 - FAD/NAD(P)-binding oxidoreductase family protein Cre12.g509800 FAP286 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 12 Flagellar Associated Protein Flagellar Associated Coiled-Coil Protein; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g12355.t1,Cre12.g509800.t1.1 - - - - - - - - - Cre09.g401150 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g9243.t1, g9243.t2 PF05071 - - - - GO:0008137,GO:0009055,GO:0016020 AT4G26965.1 - NADH:ubiquinone oxidoreductase, 17.2kDa subunit Cre12.g509200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g12368.t1,Cre12.g509200.t1.1 PF03935 - - - - - - - - Cre02.g088600 ACL2,ACLB1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 ATP citrate lyase, subunit B ATP Citrate Lyase (ACL), subunit B (EC 2.3.3.8); ATP-citrate synthase, subunit B; location uncertain, but likely to be cytosol; Similar to Arabidopsis ATP citrate lyase subunit B (GenBank NP_187317), which is similar to the carboxy half of the human ACL [ g1650.t1,Cre02.g088600.t1.1,ACL2,ACLB1 PF00285,PF00549 PTHR26330 KOG1254 2.3.3.8 K01648 GO:0044262,GO:0046912,GO:0003824,GO:0008152 AT3G06650.1 ACLB-1 ATP-citrate lyase B-1 Cre09.g409700 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g10151.t1,Cre09.g409700.t1.1 PF09718 - - - - - - - - Cre01.g039702 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 13 - - g887.t1 - - - - - - - - - Cre02.g078858 PSN1 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 14 Presenilin protease Aspartic protease (A22 family), catalytic subunit of the gamma-secretase complex; carries out intramembrane cleavage of type I monotopic membrane proteins like beta-Amyloid Precursor Protein (PMID: 17047369); presenilin is activated by cleavage in the non g1433.t1,Cre64.g793100.t1.1,Cre64.g793100.t1.2,PSN1 PF01080 PTHR10202 KOG2736 3.4.23.- K04505 GO:0004190,GO:0016021 AT1G08700.1 PS1 Presenilin-1 Cre02.g073800 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - 18 - - g1307.t1,Cre02.g073800.t1.1 PF07896 - - - - - AT5G67490.1 - - Cre03.g166250 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g3412.t1,Cre03.g166250.t1.1 PF02469 - - - - - - - - Cre01.g015700 SMM1 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g377.t1,Cre01.g015700.t1.1,SMM1 - PTHR12176 KOG1271 - - - AT3G60910.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre13.g575150 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 - - g14135.t1 - - - - - - - - - Cre02.g113400 BUG21 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 12 - - g2336.t1,Cre02.g113400.t1.1,BUG21 PF10274 PTHR21207 KOG3961 - - - - - - Cre12.g542250 RSP19,TUB1 - 0 17 1.0 1.0 0 17 1.0 1.0 O n - 11 Beta tubulin 1 Beta-tubulin 1, GI:167458; major constituent of microtubules [PMID: 3460413]; it binds one mole of GTP that is hydrolyzed and alters dynamic instability of the microtubule cytoskeleton. The TUB1 and TUB2 genes encode identical proteins [PMID: 6098820]. T g13727.t1,RSP19 PF03953,PF00091 PTHR11588 KOG1375 - K07375 GO:0003924,GO:0005525,GO:0006184,GO:0043234,GO:0051258,GO:0005874,GO:0007017 AT5G62690.1 TUB2 tubulin beta chain 2 Cre06.g273300 TST1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 - - g6131.t1,Cre06.g273300.t1.1,TST1 PF03129,PF02824,PF07973,PF00587 PTHR11451:SF5,PTHR11451 KOG1637 6.1.1.3 K01868 GO:0004812,GO:0005524,GO:0006412,GO:0005737,GO:0016876,GO:0043039,GO:0000166,GO:0006418 AT5G26830.1 - Threonyl-tRNA synthetase Cre03.g164400 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g3370.t1,Cre03.g164400.t1.1 - - - - - - - - - Cre14.g632501 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 10 - - g15240.t1 - - - - - - - - - Cre12.g529725 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g13042.t1 - - - - - - - - - Cre09.g390200 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - - - g9491.t1 PF00719 PTHR10286,PTHR10286:SF0 KOG1626 - - GO:0000287,GO:0004427,GO:0005737,GO:0006796 AT5G09650.1 AtPPa6,PPa6 pyrophosphorylase 6 Cre12.g517850 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g12769.t1 PF00097 PTHR23012,PTHR23012:SF41 - 6.3.2.19 K10661 - AT1G11020.1 - RING/FYVE/PHD zinc finger superfamily protein Cre09.g390208 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 13 - - g9662.t1,Cre02.g125500.t1.1 - - - - - - AT5G49960.1 - - Cre16.g649800 PPR3,CYCR6 - 0 10 1.0 1.0 0 10 1.0 1.0 M n - 16 Cyclin-related pentatrichopeptide repeat protein Cyclin-related pentatrichopeptide repeat protein. Previously annotated as PPR3 g15723.t1,CYCR6 PF01535,PF02984 PTHR24015 - - - GO:0005634 AT5G02860.1 - Pentatricopeptide repeat (PPR) superfamily protein Cre03.g146867 FAP17 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 14 Flagellar Associated Protein Flagellar Associated Protein with ankyrin repeats, found in the flagellar proteome [PMID: 15998802]. Identified by Abe et al. 2004 [PMID: 15459796] as NSG7, a gene expressed during nitrogen-starved gametogenesis. g3008.t1,Cre01.g062600.t1.1, g3008.t2,Cre01.g062600.t2.1,FAP17 PF00023,PF06985 PTHR24125,PTHR24125:SF302 KOG4412 - - GO:0005515 AT5G14230.1 - - Cre17.g736800 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 - - g17822.t1 - - - - - - - - - Cre17.g721200 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 - - g17450.t1,Cre17.g721200.t1.1 - - - - - - - - - Cre02.g119250 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 2 - - g2474.t1,Cre02.g119250.t1.1 - - - - - - - - - Cre16.g660225 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 - - g15947.t1,Cre16.g660250.t1.3 - - - - - - - - - Cre14.g615900 FBT3 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 9 Folate transporter Belongs to BT1-family of transporters (also known as FBT) involved in folate/pteridine transport (PMID: 16162503); most closely related to the chloroplast folate transporter At2g32040 g14839.t1,FBT3 PF03092 PTHR24003:SF331,PTHR24003 - - - - AT2G32040.1 - Major facilitator superfamily protein Cre02.g090000 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 15 - - g1681.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre02.g089550 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g1671.t2, g1671.t1,Cre02.g089550.t1.1 - - - - - - - - - Cre09.g414150 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g10257.t1, g10257.t3, g10257.t2 PF05686 PTHR12203 - - - - - - - Cre02.g109050 OPR5 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 1 - - g2235.t1,Cre02.g109050.t1.1 - - - - - - - - - Cre03.g177600 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g3672.t1 PF01565,PF04030 PTHR11748,PTHR11748:SF14 - - - GO:0016491,GO:0050660,GO:0003885,GO:0016020,GO:0055114 AT1G32300.1 - D-arabinono-1,4-lactone oxidase family protein Cre01.g038376 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g859.t1 - - - - - - - - - Cre09.g386119 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 8 - - g9088.t2,Cre29.g777650.t2.1, g9088.t1,Cre29.g777650.t1.1 PF05050 - - - - - - - - Cre01.g045800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g1027.t1 - - - - - - - - - Cre09.g386113 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 - - g9086.t1,Cre29.g777600.t1.1,Cre29.g777600.t1.2 PF00675,PF05193 PTHR11851:SF64,PTHR11851 KOG0959 3.4.24.56 K01408 GO:0004222,GO:0006508,GO:0008270 AT2G41790.1 - Insulinase (Peptidase family M16) family protein Cre13.g581400 AAA2 - 0 1 1.0 nan 0 1 1.0 nan C n - 8 Plastidic ADP/ATP translocase ADP,ATP carrier protein; belongs to a plant-specific transporter family g14279.t1,AAA2 PF03219 - - - - - AT1G80300.1 ATNTT1,NTT1 nucleotide transporter 1 Cre17.g716451 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g17343.t1,Cre17.g716451.t1.1 PF03171 - - - - GO:0016491 - - - Cre17.g716450 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g17342.t1 PF00004 PTHR23074 KOG0738 - - GO:0005524 AT1G80350.1 AAA1,ATKTN1,BOT1,ERH3,FRA2,FRC2,FTR,KTN1,LUE1 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre09.g389134 - 0 5 1.0 1.0 0 5 1.0 1.0 M n downregulated 13 - - g9633.t1,Cre02.g124100.t1.1 - - - - - - - - - Cre07.g334100 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 - - g7781.t1 PF01369 PTHR10663,PTHR10663:SF54 KOG0928 - - GO:0005086,GO:0005622,GO:0032012 AT1G13980.1 EMB30,GN,VAN7 sec7 domain-containing protein Cre02.g099400 ELG31 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - Exostosin-like glycosyltransferase Exostosin-like glycosyltransferases. Contains thiamine pyrophosphate binding conserved site g2022.t1,ELG31 PF03016 PTHR11062,PTHR11062:SF21 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre07.g321700 ADH3 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - - - - g7435.t1,Cre07.g321700.t1.1,ADH3 PF08240 PTHR11695,PTHR11695:SF298 KOG0024 - - GO:0008270,GO:0016491,GO:0055114 AT5G42250.1 - Zinc-binding alcohol dehydrogenase family protein Cre06.g293750 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 10 - - g6802.t1, g6802.t2,Cre06.g293750.t1.1 PF00642 PTHR23102 - - - GO:0003676,GO:0008270 AT3G47120.1 - RNA recognition motif (RRM)-containing protein Cre03.g156150 HEL13 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g3187.t1,HEL13 PF00271,PF00270 PTHR24031,PTHR24031:SF24 KOG0343 3.6.1.- K01529 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT5G54910.1 - DEA(D/H)-box RNA helicase family protein Cre01.g033700 - 0 8 1.0 1.0 0 8 1.0 1.0 O n upregulated 6 - - g761.t1,Cre01.g033700.t1.1 PF01933 - - - - - AT2G34090.2 MEE18 maternal effect embryo arrest 18 Cre10.g433450 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 - - g10692.t1,Cre10.g433450.t1.1 PF00400 PTHR22844 KOG0279 - - - AT1G11160.1 - Transducin/WD40 repeat-like superfamily protein Cre09.g396252 GSR2 - 0 1 1.0 nan 0 1 1.0 nan M n - - Glutathione reductase Glutathione reductase (GR) (Grase). Previously annotated as GSHR2 g9831.t1,Cre02.g132850.t1.1,Cre02.g132850.t1.2,GSR2 PF07992,PF02852,PF00070 PTHR22912,PTHR22912:SF27 KOG0405 1.8.1.7 K00383 GO:0005737,GO:0016491,GO:0045454,GO:0050660,GO:0055114 AT3G54660.1 ATGR2,EMB2360,GR glutathione reductase Cre08.g375800 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 13 - - g8853.t1 - - - - - - - - - Cre12.g558300 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 15 - - g13364.t1 PF00069,PF07714 PTHR23257,PTHR23257:SF99 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT1G16270.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre12.g532350 CAV8 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 16 Voltage-gated Ca2+ channel, alpha subunit Voltage-dependent 4-domain calcium channel, alpha subunit; may exhibit altered ion selectivity as conserved P-loop loci differ from mammalian Ca2+ channels (PMID: 8968582) g13099.t1,CAV8 PF00520 PTHR10037:SF138,PTHR10037 KOG2301 - K04855 GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G03560.1 ATCCH1,ATTPC1,FOU2,TPC1 two-pore channel 1 Cre02.g117300 MRPL45 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 Putative mitochondrial ribosomal protein L45, imported to mitochondria Putative mitochondrial ribosomal protein L45 g2429.t1,Cre02.g117300.t1.1,MRPL45 PF04280 - KOG4599 - - GO:0005744,GO:0006886,GO:0015450 AT5G27395.1 - Mitochondrial inner membrane translocase complex, subunit Tim44-related protein Cre10.g466550 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g11435.t1,Cre10.g466550.t1.1 PF03909 PTHR12856 - - - - AT1G55750.1 - BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) Cre09.g412650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g10215.t1 PF01753 - - - - GO:0008270 - - - Cre10.g452600 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g11116.t1,Cre10.g452600.t1.1 PF10153 - KOG4484 - - - AT5G43720.1 - Protein of unknown function (DUF2361) Cre15.g638304 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g15448.t1 - - - - - - - - - Cre09.g396624 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g9841.t1,Cre02.g133300.t1.1,Cre02.g133300.t1.2 PF00023 PTHR24116,PTHR24116:SF97 KOG0502 - - GO:0005515 AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre06.g309951 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 17 - - g7172.t1,Cre06.g309950.t1.3 PF00059 PTHR11339,PTHR11339:SF126 KOG2133 - - GO:0005488 - - - Cre16.g663850 SSS5 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 Soluble starch synthase Putative soluble starch synthase IV g16028.t1 PF00534,PF08323 PTHR12526,PTHR12526:SF17 - - - GO:0009058 AT4G18240.1 ATSS4,SS4,SSIV starch synthase 4 Cre01.g026550 CCT7 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 T-complex protein 1, eta subunit T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta) (TCPH); subunit of cytosolic chaperonin complex g609.t1,CCT7 PF00118 PTHR11353:SF22,PTHR11353 KOG0361 - - GO:0005524,GO:0006457,GO:0051082,GO:0044267 AT3G11830.1 - TCP-1/cpn60 chaperonin family protein Cre13.g592000 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g14514.t1,Cre13.g592000.t1.1 PF00069 PTHR26263,PTHR26263:SF49 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT3G01090.1 AKIN10,KIN10,SNRK1.1 SNF1 kinase homolog 10 Cre09.g387245 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 7 - - g9581.t1,Cre02.g121650.t1.1 PF02516 PTHR13872,PTHR13872:SF18 KOG2292 2.4.1.119 K07151 GO:0004576,GO:0006486,GO:0016020 AT5G19690.1 STT3A staurosporin and temperature sensitive 3-like A Cre01.g019700 PAP7 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 10 Non-canonical poly(A) polymerase Putative non-canonical poly(A) polymerase (PAP) g460.t1,Cre01.g019700.t1.1,PAP7 - PTHR12271,PTHR12271:SF13 - - - - AT3G45750.1 - Nucleotidyltransferase family protein Cre01.g043400 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g971.t1,Cre01.g043400.t1.1 - - - - - - AT5G59210.1 - myosin heavy chain-related Cre14.g611100 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g14731.t2,Cre14.g611100.t1.1, g14731.t1 - - - - - - - - - Cre09.g396200 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 17 - - g9365.t1,Cre09.g396200.t1.1 - - - - - - - - - Cre13.g572650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 11 - - g14082.t1 - - - - - - - - - Cre17.g714350 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g17297.t1 - - - - - - - - - Cre07.g352600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8201.t1 - PTHR22884,PTHR22884:SF114 - - - - AT5G04940.1 SUVH1 SU(VAR)3-9 homolog 1 Cre08.g359300 PHO1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - Alkaline phosphatase Similar to C-terminal half of 145 kDa, phosphate-deficiency inducible alkaline phosphatase, encoded by phoA, from Synechococcus sp. PCC 7942 g8416.t1,Cre08.g359300.t1.1,PHO1 - PTHR11575,PTHR11575:SF3 - - - GO:0009166,GO:0016787 - - - Cre17.g717919 - 0 4 1.0 1.0 0 4 1.0 1.0 - n - - - - g17375.t1,Cre17.g717919.t1.1, g17375.t2 - - - - - - - - - Cre06.g278240 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6382.t1,Cre13.g600350.t2.1, g6382.t2,Cre13.g600350.t1.1,Cre13.g600350.t1.2 - - - - - - - - - Cre06.g278243 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g6385.t1,Cre13.g600550.t1.1 PF01565,PF01227 PTHR13878:SF15,PTHR13878 - - - GO:0016491,GO:0050660 AT3G07270.2 - GTP cyclohydrolase I Cre01.g005300 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g128.t1,Cre01.g005300.t1.1 - - - - - - - - - Cre06.g278247 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 6 - - g6389.t1,Cre13.g600750.t1.1 - - - - - - - - - Cre06.g278249 AST5 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 4 Putative aspartate aminotransferase Putative aspartate aminotransferase (EC 2.6.1.1); appears to lack an organelle targeting sequence; subcellular localization unsure; most closely related to aminotransferases from Thermus and from Cyanobacteria; could transaminate other substrates; Putativ g6391.t1,Cre13.g600800.t1.1,Cre13.g600800.t1.2,AST5 PF00155 PTHR11751:SF33,PTHR11751 KOG0257 - - GO:0009058,GO:0016769,GO:0030170 AT2G22250.1 AAT,ATAAT,MEE17 aspartate aminotransferase Cre06.g278248 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g6390.t1,Cre13.g600776.t1.1,Cre13.g600776.t1.2 PF01753 PTHR23151:SF8,PTHR23151 - - - GO:0008270 - - - Cre09.g393580 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g9758.t1,Cre02.g129600.t1.1 PF03097 - - - - - - - - Cre03.g148450 TEH1 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g3019.t1,TEH1 PF03061 PTHR11049 KOG2763 3.1.2.- K12417 - AT2G30720.1 - Thioesterase/thiol ester dehydrase-isomerase superfamily protein Cre12.g557300 BLZ10 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g13383.t1,BLZ10 PF00170 - - - - GO:0003700,GO:0006355,GO:0043565,GO:0046983 - - - Cre03.g186600 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 18 - - g3866.t1 - - - - - - - - - Cre10.g461700 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 17 - - g11318.t1 - - - - - - - - - Cre16.g652950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g15790.t1,Cre16.g652950.t1.1 PF00400,PF12341 PTHR19932,PTHR19932:SF10 KOG1274 - K11274 - AT3G42660.1 - transducin family protein / WD-40 repeat family protein Cre10.g464950 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 9 - - g11392.t1 - PTHR23082 - - - - AT1G17680.1 - tetratricopeptide repeat (TPR)-containing protein Cre04.g218650 UCP3 - 0 1 1.0 nan 0 1 1.0 nan M n - 4 Uncoupling protein Mitochondrial uncoupling protein; similar to human mitochondrial uncoupling protein 4 g4766.t1 PF00153 PTHR24089:SF25,PTHR24089 KOG0753 - - - AT1G14140.1 - Mitochondrial substrate carrier family protein Cre11.g482952 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 17 - - g11990.t1 - - - - - - - - - Cre14.g633250 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g15267.t1,Cre14.g633250.t1.1 - - - - - - - - - Cre10.g460250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g11284.t1,Cre10.g460250.t1.1 - - - - - - - - - Cre16.g672721 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g16705.t1,Cre01.g065300.t1.1,Cre01.g065300.t1.2 - - - - - - - - - Cre10.g437601 - 0 1 1.0 nan 0 1 1.0 nan M n - 11 - - g10782.t1,Cre10.g437600.t1.3 - - - - - - - - - Cre03.g204450 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 11 - - g4226.t1,Cre03.g204450.t1.1 - - - - - - - - - Cre01.g046052 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 15 - - g1032.t1 PF00069 PTHR24347,PTHR24347:SF65 - - - GO:0004672,GO:0005524,GO:0006468 - - - Cre17.g715400 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g17318.t1 PF00566 PTHR22957,PTHR22957:SF34 - - - GO:0005097,GO:0005622,GO:0032313 AT5G53570.2 - Ypt/Rab-GAP domain of gyp1p superfamily protein Cre04.g231124 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 - - g5048.t1,Cre32.g781700.t1.1,Cre32.g781700.t1.2 PF00397,PF00642 - - - - GO:0005515,GO:0003676,GO:0008270 AT3G12130.1 - KH domain-containing protein / zinc finger (CCCH type) family protein Cre09.g401701 - 0 4 1.0 1.0 0 4 1.0 1.0 M n upregulated 15 - - g9998.t1,Cre02.g139500.t1.1,Cre02.g139500.t1.2 PF06966 PTHR21257,PTHR21257:SF7 - - - - AT1G18180.1 - Protein of unknown function (DUF1295) Cre09.g401700 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g9230.t1,Cre09.g401700.t1.1 PF00515 PTHR16193 - - - GO:0005515 AT5G17270.1 - Protein prenylyltransferase superfamily protein Cre09.g408626 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g10127.t1 - - - - - - - - - Cre03.g165900 PGM17 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g3404.t1,PGM17 PF00300 PTHR23029 KOG3734 - - - AT3G60450.1 - Phosphoglycerate mutase family protein Cre01.g003532 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g87.t1 - - - - - - - - - Cre06.g280385 PAP6 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g6521.t1,Cre06.g280400.t1.3,PAP6 - - - - - - - - - Cre09.g394176 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 15 - - g9775.t1 - - - - - - - - - Cre07.g312800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g7237.t1, g7237.t2 - PTHR23012,PTHR23012:SF30 - - - - - - - Cre02.g102450 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 8 - - g2092.t1,Cre02.g102450.t1.1 PF00400 PTHR22847:SF183,PTHR22847 KOG2096 - - - AT4G00090.1 - Transducin/WD40 repeat-like superfamily protein Cre03.g180600 FPN3 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - - - - g3743.t1,FPN3 PF02872,PF00149 PTHR11575,PTHR11575:SF8 KOG4419 3.1.3.5 K01081 GO:0009166,GO:0016787 - - - Cre08.g379800 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 11 - - g8941.t1,Cre08.g379800.t1.1 - PTHR13062:SF1,PTHR13062 - - - - - - - Cre05.g241500 MOT30 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g5567.t1,MOT30 - - - - - - - - - Cre05.g244750 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g5239.t1 PF05282 PTHR12689 KOG3937 - K13205 - AT1G66510.1 - AAR2 protein family Cre06.g285200 NDH1 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 7 - - g6630.t1,NDH1 PF00293 PTHR22769 - - - GO:0016787 AT2G42070.1 ATNUDT23,ATNUDX23,NUDX23 nudix hydrolase homolog 23 Cre01.g054000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g1193.t1,Cre01.g054000.t1.1 PF01585 PTHR23149,PTHR23149:SF1 - - - GO:0003676,GO:0005622 AT1G63980.1 - D111/G-patch domain-containing protein Cre05.g247851 CEP2 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 14 - - g5177.t1,Cre05.g247800.t1.2,CEP2 PF00112,PF00396,PF08246 PTHR12411:SF44,PTHR12411 KOG1542 - - GO:0006508,GO:0008234 AT5G43060.1 - Granulin repeat cysteine protease family protein Cre03.g157050 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g3206.t1 PF11744 - - - - GO:0010044 - - - Cre12.g499650 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g12585.t1,Cre12.g499650.t1.1 PF06127 - KOG3292 - - - AT1G18720.1 - Protein of unknown function (DUF962) Cre16.g678094 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g16137.t1 - - - - - - - - - Cre04.g230830 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g5045.t1,Cre32.g781850.t1.1 PF00789 PTHR23322,PTHR23322:SF18 - - - GO:0005515 AT4G23040.1 - Ubiquitin-like superfamily protein Cre06.g258100 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 - - g5801.t1 PF03399 PTHR12436:SF4,PTHR12436 KOG1861 - - - AT2G39340.1 - SAC3/GANP/Nin1/mts3/eIF-3 p25 family Cre10.g443050 PHX15 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 11 - - g10897.t1,Cre10.g443050.t1.1,PHX15 PF03171 PTHR10869 - - - GO:0016491 AT5G18900.1 - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Cre06.g304650 PIK3 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7052.t1,PIK3 PF00454 PTHR10048,PTHR10048:SF22 - 2.7.1.67 K00888 GO:0004428,GO:0046854,GO:0048015,GO:0016773 AT5G09350.1 PI-4KBETA2,PI4KBETA2 phosphatidylinositol 4-OH kinase beta2 Cre10.g444000 - 0 19 1.0 1.0 0 19 1.0 1.0 O n upregulated 15 - - g10915.t1,Cre10.g444000.t1.1 PF05049 PTHR14143 - - - GO:0005525,GO:0016020,GO:0016817 - - - Cre06.g307300 ANT2 - 0 7 1.0 1.0 0 7 1.0 1.0 O n upregulated 5 ADP/ATP carrier protein, mitochondrial Putative adenine nucleotide translocase; ADP/ATP carrier protein, probably mitochondrial g7117.t1,ANT2 PF00153 PTHR24089:SF35,PTHR24089 KOG0749 - - - AT5G56450.1 - Mitochondrial substrate carrier family protein Cre07.g346250 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated - - - g8055.t1 - - - - - - - - - Cre06.g253300 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g5677.t1,Cre06.g253300.t1.1 PF01088 PTHR10589,PTHR10589:SF16 KOG2778 3.4.19.12 K05610 GO:0004221,GO:0005622,GO:0006511 AT1G65650.1 UCH2 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 Cre04.g228800 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g5007.t1 PF00069 PTHR24349,PTHR24349:SF111 KOG0580 - - GO:0004672,GO:0005524,GO:0006468 AT4G32830.1 AtAUR1,AUR1 ataurora1 Cre02.g141166 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2692.t1,Cre35.g784150.t1.1,Cre35.g784150.t1.2 - - - - - - - - - Cre06.g306650 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g7103.t2, g7103.t1 PF01435 PTHR22726 KOG2661 - - GO:0004222,GO:0006508,GO:0016020 AT5G51740.1 - Peptidase family M48 family protein Cre12.g493100 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g12088.t1 - - - - - - - - - Cre01.g045650 ZNJ3 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 13 DnaJ-like zinc-finger protein Contains a Zn-finger domain with CXXCXGXG motif, also found in DnaJ co-chaperones; probably organelle-targeted g1023.t1,Cre01.g045650.t1.1,ZNJ3 - - - - - - AT2G24860.1 - DnaJ/Hsp40 cysteine-rich domain superfamily protein Cre17.g711401 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g17227.t1 - PTHR23130 KOG4293 - - - AT3G61750.1 - Cytochrome b561/ferric reductase transmembrane with DOMON related domain Cre12.g535750 CPA1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 N-carbamoylputrescine amidase Highly similar to plant N-carbamoylputrescine amidase (amidohydrolase), last step in the agmatinase pathway of polyamine (putrescine) biosynthesis g13177.t1,CPA1 PF00795 PTHR23088 KOG0806 - - GO:0006807,GO:0016810 AT2G27450.1 ATNLP1,CPA,NLP1 nitrilase-like protein 1 Cre12.g496550 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 11 - - g12653.t1,Cre12.g496550.t1.1 - - - - - - - - - Cre16.g671600 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 - - g16695.t1 - - KOG2985 - - - AT5G16780.1 DOT2,MDF SART-1 family Cre01.g051174 BLZ1 - 0 1 1.0 nan 0 1 1.0 nan M n - 18 - - g1133.t1,Cre01.g051150.t1.3,BLZ1 PF07716 - KOG4005 - - GO:0003700,GO:0006355,GO:0043565,GO:0046983 - - - Cre02.g142526 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2778.t1 - - - - - - - - - Cre07.g325710 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g7524.t2,Cre26.g771855.t1.1,Cre26.g771855.t1.2 - - - - - - - - - Cre09.g393000 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g9429.t1 PF00685 PTHR10605,PTHR10605:SF3 - - - GO:0008146 - - - Cre09.g398050 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 15 - - g9321.t1 - PTHR23023 - - - - - - - Cre01.g026500 ASP3 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 11 Pepsin-type aspartyl protease Aspartic protease, pepsin (A1) family; directed to secretory pathway g608.t1,ASP3 PF00026 PTHR13683,PTHR13683:SF98 KOG1339 - - GO:0004190,GO:0006508 AT5G43100.1 - Eukaryotic aspartyl protease family protein Cre18.g749547 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - - - - g18107.t1,Cre31.g780300.t1.1 PF07510,PF03235 - - - - - - - - Cre03.g172850 OASTL3,ASL3 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 O-acetylserine (Thiol)-lyase/cysteine synthase O-acetylserine sulfhydrylase (EC 2.5.1.47); cysteine synthase; O-acetylserine (Thiol)-lyase; Target-P predicts mitochondrial targeting; homology predicts plastid targeting. Previously annotated as OASTL3 g3564.t1,Cre03.g172850.t1.1,ASL3,OASTL3 PF00291 PTHR10314,PTHR10314:SF8 KOG1252 - - GO:0003824,GO:0008152,GO:0030170 AT2G43750.1 ACS1,ATCS-B,CPACS1,OASB O-acetylserine (thiol) lyase B Cre02.g141786 PDE25 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 17 3\',5\'-cyclic-nucleotide phosphodiesterase Calmodulin dependent PDE1B1 protein from Homo Sapiens is closest relative g2731.t1,Cre15.g647050.t1.1,PDE25 PF00233 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre02.g114450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 7 - - g2363.t1,Cre02.g114450.t1.1 - - - - - - AT2G03420.1 - - Cre10.g453728 - 0 1 1.0 nan 0 1 1.0 nan M n - 13 - - g11139.t1 - - - - - - - - - Cre02.g080950 - 0 1 1.0 nan 0 1 1.0 nan C n - 13 - - g1480.t1,Cre02.g080950.t1.1 - - - - - - - - - Cre16.g686846 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 13 - - g16834.t1,Cre01.g070800.t1.1 - - - - - - - - - Cre16.g679051 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g16534.t1,Cre16.g678950.t1.2 - - - - - - - - - Cre10.g423000 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g10464.t1,Cre10.g423000.t1.1 - - - - - - - - - Cre12.g534400 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g13143.t1 - - - - - - - - - Cre11.g476500 PAO7 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g11836.t1,PAO7 PF08417,PF00355 PTHR21266,PTHR21266:SF3 - - - GO:0010277,GO:0055114,GO:0016491,GO:0051537 AT4G25650.1 ACD1-LIKE,PTC52,TIC55-IV ACD1-like Cre14.g633000 ERV1,TOX1 - 0 1 1.0 nan 0 1 1.0 nan O n - - Thiol oxidase Sulfhydryl oxidase. Erv1/Alr, similar to yeast Erv1 (mitochondrial) and Erv2 (ER), Erv1/Alr family; possibly mitochondrial. Previously incorrectly annotated/switched as ERV2 (should have been ERV1) g15262.t1,Cre14.g633000.t1.1,TOX1 PF04777 PTHR12645 KOG3355 - - GO:0016972,GO:0055114 AT1G49880.1 - Erv1/Alr family protein Cre16.g689201 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g16179.t1,Cre16.g689200.t1.3 - - - - - - - - - Cre17.g699776 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g16970.t1 - - - - - - - - - Cre02.g084700 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g1563.t1,Cre02.g084700.t1.1 - - - - - - - - - Cre17.g718800 MPA14 - 0 1 1.0 nan 0 1 1.0 nan O Y - 11 - - g17395.t1,Cre17.g718800.t1.1,MPA14 PF00149 PTHR11668,PTHR11668:SF155 - - - GO:0016787 AT1G18480.1 - Calcineurin-like metallo-phosphoesterase superfamily protein Cre08.g363050 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 13 - - g8502.t1,Cre08.g363050.t1.1 - - - - - - - - - Cre17.g705000 CDPK1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 Calcium-dependent protein kinase Calcium-dependent Protein Kinase Homolog 1; found in the flagellar proteome as FAP223 [PMID: 15998802] g17088.t1,Cre17.g705000.t1.1,CDPK1 PF00168,PF00069,PF00036 PTHR24349:SF13,PTHR24349 KOG0032 2.7.11.1 K13412 GO:0005515,GO:0004672,GO:0005524,GO:0006468 AT5G12180.1 CPK17 calcium-dependent protein kinase 17 Cre03.g179880 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - - - - g3725.t1 - - - - - - - - - Cre02.g085257 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 18 - - g1575.t1,Cre02.g085257.t1.1 PF01036 - - - - GO:0005216,GO:0006811,GO:0016020 - - - Cre02.g109600 INM1,IPP3 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 6 Inositol monophosphatase Inositol monophosphatase; 93% identical to putative IMPase from Chlamydomonas incerta (GenBank AAW82030). Possible glutathione S-transferase activity. Previously annotated as INM1 g2248.t1,Cre02.g109600.t1.1,INM1,IPP3 PF00459 PTHR20854:SF10,PTHR20854 KOG2951 3.1.3.25 K01092 GO:0004437 AT1G31190.1 IMPL1 myo-inositol monophosphatase like 1 Cre15.g637350 TMG13,TRM3 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 tRNA (guanosine-2\'-O)-methyltransferase tRNA methyltransferase, catalyzes the transfer of a methyl group from S-adenosylmethionine to the 2\'-OH of the guanosine residue at position 18 of tRNAs. Previously annotated as TRM3 g15372.t1,Cre15.g637350.t1.1,TMG13,TRM3 PF00588 PTHR12029:SF11,PTHR12029 - - - GO:0003723,GO:0006396,GO:0008173 AT4G17610.1 - tRNA/rRNA methyltransferase (SpoU) family protein Cre17.g704350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 4 - - g17075.t1,Cre17.g704350.t1.1 - PTHR10374,PTHR10374:SF2 KOG2943 - - - AT1G11840.6 ATGLX1,GLX1 glyoxalase I homolog Cre03.g178750 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated - - - g3701.t1 - - - - - - - - - Cre02.g093300 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 7 - - g1761.t1 PF08216 PTHR14978 KOG2734 - K12864 - AT3G02710.1 - ARM repeat superfamily protein Cre04.g213450 VPS2A - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 16 Subunit of the ESCRT-III complex Expressed Protein. Similar to yeast Vps2p/Did4p, SNF7-domain protein, component of the ESCRT-III complex involved in the ubiquitin-mediated internalization into the multi-vesicular bodies (late endosomes) g4708.t1,Cre04.g213450.t1.1,VPS2A PF03357 PTHR10476,PTHR10476:SF4 KOG3230 - K12191 GO:0015031 AT2G06530.1 VPS2.1 SNF7 family protein Cre01.g009325 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g235.t1 PF05721 - - - - - - - - Cre03.g189400 TSS2,SERRS2 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 Seryl-tRNA(Sec) synthetase Transfers seryl moiety to tRNA-Ser and to tRNA-Sec (for selenocysteine synthesis) g3922.t1,Cre03.g189400.t1.1,SERRS2,TSS2 PF00587,PF02403 PTHR11778 KOG2509 6.1.1.11 K01875 GO:0000166,GO:0004828,GO:0005524,GO:0005737,GO:0006412,GO:0006434,GO:0004812,GO:0006418 AT5G27470.1 - seryl-tRNA synthetase / serine--tRNA ligase Cre06.g272350 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 13 - - g6110.t1,Cre06.g272350.t1.1 - - - - - - - - - Cre07.g317601 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g7343.t1 - - - - - - - - - Cre16.g694900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 7 - - g15572.t1 - - - - - - - - - Cre16.g688550 GSTS1,GST1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n upregulated 8 Glutathione S-transferase Glutathione S-transferases (Sigma class), Gene expression is induced by various oxidative stress conditions [PMID: 17435007; PLANT SCIENCE 168: 747-759]. Possible prostaglandin-D synthase activity. Previously annotated as GSTS1 g16164.t1,Cre16.g688550.t1.1,GST1 PF02798,PF00043 PTHR11571:SF16,PTHR11571 KOG1695 2.5.1.18 K00799 GO:0005515 - - - Cre06.g295001 - 0 9 1.0 1.0 0 9 1.0 1.0 M n - 8 - - g6829.t1,Cre06.g295000.t1.3 - - - - - - - - - Cre01.g046600 - 0 1 1.0 nan 0 1 1.0 nan O n - 3 - - g1011.t1 - - - - - - - - - Cre17.g739050 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 13 - - g17874.t1 PF00400 - - - - - - - - Cre05.g239652 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g5157.t1 - - - - - - AT5G13010.1 EMB3011 RNA helicase family protein Cre05.g239650 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 13 - - g5527.t1 - - - - - - - - - Cre16.g674950 POD2 - 0 6 1.0 1.0 0 6 1.0 1.0 C Y - 7 - - g16619.t1,Cre16.g674950.t1.1,POD2 PF01593 PTHR10668:SF5,PTHR10668 KOG4254 - - - AT1G57770.1 - FAD/NAD(P)-binding oxidoreductase family protein Cre06.g301850 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g6986.t1 - - - - - - - - - Cre15.g636004 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g15343.t1,Cre15.g636004.t1.1 - - - - - - - - - Cre08.g366400 RAD23 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g8585.t1,RAD23, g8585.t2,Cre08.g366400.t1.1,RAD23 PF09280,PF00240,PF00627 PTHR10621 KOG0011 - K10839 GO:0003684,GO:0006289,GO:0043161,GO:0005515 AT1G79650.1 RAD23,RAD23B Rad23 UV excision repair protein family Cre02.g108550 AOC3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Amino acid carrier Amino acid carrier 3; belongs to APC (Amino acid Polyamine organoCation) family g2225.t1,AOC3 PF00324 PTHR11785,PTHR11785:SF140 KOG1289 - - GO:0003333,GO:0015171,GO:0016020,GO:0006810,GO:0055085 AT2G01170.1 BAT1 bidirectional amino acid transporter 1 Cre06.g258350 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 17 - - g5807.t1 - PTHR10588,PTHR10588:SF29 - - - - - - - Cre12.g514650 CNK6 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 NimA-related protein kinase NimA-(never-in-mitosis) related protein kinase homolog 6 [gi:34334401, PMID: 15068267] g12700.t1,Cre12.g514650.t1.1,CNK6 PF00069,PF10498 PTHR24362,PTHR24362:SF98 KOG0591 2.7.11.1 K08857 GO:0004672,GO:0005524,GO:0006468 AT1G54960.1 ANP2,MAPKKK2,NP2 NPK1-related protein kinase 2 Cre07.g349152 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g8123.t2, g8123.t1 PF01842,PF00010 - - - - GO:0008152,GO:0016597,GO:0006355,GO:0030528 AT2G39570.1 - ACT domain-containing protein Cre08.g361750 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 8 - - g8469.t1 - - - - - - - - - Cre03.g160500 TSK1 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g3288.t1,Cre03.g160500.t1.1,TSK1 PF00152,PF01336 PTHR22594,PTHR22594:SF4 KOG1885 6.1.1.6 K04567 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418,GO:0003676 AT3G11710.1 ATKRS-1 lysyl-tRNA synthetase 1 Cre05.g234150 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g5090.t1 - - - - - - - - - Cre14.g608900 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g14678.t1 - - - - - - - - - Cre13.g579901 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 2 - - g14247.t1 PF00089 PTHR22939,PTHR22939:SF1 KOG1320 - - GO:0004252,GO:0006508 AT5G40200.1 DegP9 DegP protease 9 Cre09.g388467 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Rab GDP dissociation inhibitor protein Expressed Protein. Similar to Rab GDP Dissociation Inhibitor; homolog of GDIV1, [GI:1572518] Found in the flagellar proteome [PMID: 15998802]. Previoiusly annotated as GDIC1 g9614.t1,Cre02.g123200.t1.1,Cre02.g123200.t1.2 PF00996 PTHR11787 KOG1439 - - - AT5G09550.1 - GDP dissociation inhibitor family protein / Rab GTPase activator family protein Cre04.g217050 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g4518.t1 - - - - - - - - - Cre03.g148150 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 15 - - g3013.t1 PF04884 PTHR12770,PTHR12770:SF17 KOG4249 - - - AT3G45890.1 RUS1 Protein of unknown function, DUF647 Cre06.g277350 HDA13 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 9 - - g6216.t1,HDA13 PF00850 PTHR10625,PTHR10625:SF28 KOG1342 3.5.1.98 K06067 - AT4G38130.1 ATHD1,ATHDA19,HD1,HDA1,HDA19,RPD3A histone deacetylase 1 Cre12.g556911 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 8 - - g13391.t1 PF04152,PF00149 PTHR10139 KOG2310 - K10865 GO:0004519,GO:0005634,GO:0006302,GO:0030145,GO:0004527,GO:0006259,GO:0016787 AT5G54260.1 ATMRE11,MRE11 DNA repair and meiosis protein (Mre11) Cre04.g226750 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g4962.t1,Cre04.g226750.t1.1 PF03330 - - - - - AT2G03090.1 ATEXP15,ATEXPA15,ATHEXP ALPHA 1.3,EXP15,EXPA15 expansin A15 Cre06.g281750 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g6553.t1,Cre06.g281750.t1.1 PF09696 - KOG4487 - - - AT5G52220.1 - - Cre02.g145250 RPS27E2,RPS27-B,RPS27e2 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 12 Ribosomal protein S27e isoform 2, component of 80S ribosome and 40S small subunit Cytosolic 80S ribosomal protein S27e, isoform 2; Cytosolic 40S small ribosomal subunit protein S27e, isoform 2. Previously annotated as RPS27-B g2562.t1,Cre02.g145250.t1.1,RPS27e2,RPS27-B PF01667 PTHR11594 KOG1779 - - GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT3G61110.1 ARS27A,RS27A ribosomal protein S27 Cre12.g517300 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g12757.t1 PF07738 PTHR12953 - - - - AT1G71360.1 - Galactose-binding protein Cre14.g610200 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g14708.t1 - - - - - - - - - Cre06.g299800 LCL1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 17 - - g6933.t1,Cre06.g299800.t1.1,LCL1 PF00501 PTHR24096,PTHR24096:SF150 KOG1256 6.2.1.3 K01897 GO:0003824,GO:0008152 AT3G23790.1 AAE16 AMP-dependent synthetase and ligase family protein Cre17.g706850 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 8 - - g17127.t1 PF08551 PTHR13377 KOG2890 - - - AT3G07950.1 - rhomboid protein-related Cre14.g632783 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g15250.t1,Cre75.g795500.t1.1,Cre75.g795500.t1.2 PF00134 PTHR10026,PTHR10026:SF8 - - K06634 GO:0000079,GO:0006355,GO:0019901,GO:0005675 AT5G27620.1 CYCH;1 cyclin H;1 Cre04.g221250 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 11 - - g4829.t1,Cre04.g221250.t1.1 PF11378 - - - - - - - - Cre16.g687854 FAP5 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 3 Fasciclin-like protein Contains FAS1 domain. Note: overlaps FAP5 gene model in v3. g16843.t1,Cre01.g071150.t1.1 - - - - - - - - - Cre14.g628650 MME4 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - NADP malic enzyme Malic Enzyme, NADP-dependent; malate dehydrogenase, decarboxylating (EC 1.1.1.40); same scaffold as MME2 & MME3; possibly plastid targeted, based on N-terminal extension (although predicted mitochondrial by Target-P) and homology g15142.t1,Cre14.g628650.t1.1 PF00390,PF03949 PTHR23406:SF2,PTHR23406 KOG1257 1.1.1.40 K00029 GO:0016616,GO:0051287 AT5G25880.1 ATNADP-ME3,NADP-ME3 NADP-malic enzyme 3 Cre08.g376850 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8876.t2, g8876.t1,Cre08.g376850.t1.1 - - - - - - - - - Cre03.g146087 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 3 - - g2969.t1,Cre01.g060700.t1.1 - - - - - - - - - Cre13.g576150 APN1 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 13 - - g14159.t1,APN1 PF00710 PTHR11707 KOG0503 3.5.1.1 K01424 GO:0006520 - - - Cre11.g467639 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11569.t1,Cre18.g746700.t1.1,Cre18.g746700.t1.2 PF04910 PTHR22684 KOG2422 - - - AT2G46900.1 - - Cre02.g087666 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g1629.t1 PF00014 PTHR10083:SF39,PTHR10083 - - - GO:0004867 - - - Cre12.g543052 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 4 - - g13790.t1,Cre27.g774400.t1.1,Cre27.g774400.t1.2 PF01494 PTHR13789,PTHR13789:SF100 KOG2614 - - GO:0004497,GO:0055114 - - - Cre02.g111600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g2297.t1,Cre02.g111600.t1.1 - - - - - - AT3G13235.3 - ubiquitin family protein Cre10.g422850 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 18 - - g10461.t1 PF02129 PTHR11731 KOG1455 - - GO:0004177,GO:0006508 - - - Cre02.g119050 CER1 - 0 6 1.0 1.0 0 6 1.0 1.0 O Y - 16 Carboxyesterase-related protein Carboxyesterase-related protein, conserved protein of unknown function; contains esterase/lipase/thioesterase domain and predicted N-terminal signal peptide. Similar to an Arabidopsis At1g26120 hypothetical protein with a carboxylesterase domain encoded b g2470.t1,CER1 PF07859,PF00326 PTHR11559,PTHR11559:SF87 - - - GO:0008152,GO:0016787,GO:0006508,GO:0008236 AT3G02410.1 ICME-LIKE2 alpha/beta-Hydrolases superfamily protein Cre16.g690100 FAP213 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 Flagellar Associated Protein Flagellar Associated Protein, coiled coil; found in the flagellar proteome [PMID: 15998802] g16198.t1,Cre16.g690100.t1.1 - - - - - - - - - Cre09.g397068 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 Cytochrome P450, CYP3 superfamily Cytochrome P450, CYP3 superfamily. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP744 family has best BLAST hits to CYP5 family members (thromboxane A2 synthase in an g9854.t1,Cre02.g133900.t1.1 - - - - - - - - - Cre13.g592450 COPE1 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Epsilon subunit of COP-I complex Expressed Protein. Epsilon-COP. Subunit of COP-I complex involved in vesicle trafficking. g14523.t1,Cre13.g592450.t1.1,COPE1 PF04733 PTHR10805 KOG3081 - - GO:0005198,GO:0006890,GO:0030126 AT1G30630.1 - Coatomer epsilon subunit Cre07.g321850 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7438.t1,Cre07.g321850.t1.1 PF09229 PTHR13009 - - - GO:0001671,GO:0005737,GO:0051087 AT5G58110.1 - chaperone binding;ATPase activators Cre17.g737084 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g17828.t1,Cre17.g737084.t1.1 - - - - - - - - - Cre03.g199200 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 11 - - g4344.t1 - - - - - - - - - Cre07.g320450 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 2 - - g7410.t1,Cre07.g320450.t1.1, g7410.t2 PF00504 - - - - - AT3G22840.1 ELIP,ELIP1 Chlorophyll A-B binding family protein Cre01.g009150 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 9 - - g231.t1 - - - - - - - - - Cre03.g195410 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g4049.t1,Cre03.g195410.t1.1 - - - - - - - - - Cre10.g431650 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 9 - - g10655.t1,Cre10.g431650.t1.1 PF01513 PTHR20275 KOG2178 - - GO:0003951,GO:0008152 AT1G21640.1 ATNADK2,NADK2 NAD kinase 2 Cre04.g222500 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g4855.t1 - - KOG0999 - - - - - - Cre17.g731700 FMO2 - 0 10 1.0 1.0 0 10 1.0 1.0 M n - 15 Flavin-containing monooxygenase Uses NADPH and non-covalently-bound FAD to catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms; important for xenobiotic detoxification; one of the many Arabidopsis homologues is essential for Systemic Acquired Resis g17685.t1,FMO2 PF00743 PTHR23023:SF18,PTHR23023 KOG1399 - - GO:0004499,GO:0050660,GO:0050661,GO:0055114 AT1G19250.1 FMO1 flavin-dependent monooxygenase 1 Cre08.g359750 RPS9 - 0 1 1.0 nan 0 1 1.0 nan O n - - Ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit Cytosolic 80S ribosomal protein S9; Cytosolic 40S small ribosomal subunit protein S9 g8426.t2, g8426.t1,Cre08.g359750.t1.1 PF01479,PF00163 PTHR11831,PTHR11831:SF3 KOG3301 - K02997 GO:0003723,GO:0005622,GO:0019843 AT5G39850.1 - Ribosomal protein S4 Cre02.g118900 MYG1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 MYG1/GAMM1-like protein Highly conserved expressed protein; homolog of mouse MYG1 (GAMM1), a highly conserved gene from autonomously proliferating mouse melanocytes. Contains a putative metal-dependent hydrolase domain. Similar to GAMM1 protein of Arabidopsis thaliana g2467.t1,Cre02.g118900.t1.1,MYG1 PF03690 PTHR11215 KOG2948 - - - AT5G41970.1 - Metal-dependent protein hydrolase Cre01.g045350 DRC5,FAP155 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g1014.t1,Cre01.g045350.t1.1,FAP155 PF00560 PTHR24107,PTHR24107:SF9 - - - GO:0005515 AT1G10510.1 emb2004 RNI-like superfamily protein Cre09.g410850 NAR3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g10176.t1,Cre09.g410850.t1.1,NAR3,NRT2.1 PF07690 PTHR24003,PTHR24003:SF2 KOG2533 - - GO:0016021,GO:0055085 AT1G12940.1 ATNRT2.5,NRT2.5 nitrate transporter2.5 Cre07.g330000 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g7680.t1 - - - - - - - - - Cre01.g018184 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g429.t1,Cre01.g018184.t1.1 - - - - - - - - - Cre10.g433650 TMC3 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 5 - - g10697.t1,TMC3 PF01189 PTHR22807 - - - - AT4G26600.1 - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Cre05.g246950 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 16 - - g5193.t1 - - - - - - - - - Cre13.g587450 FCL2 - 0 5 1.0 1.0 0 5 1.0 1.0 C n upregulated - Predicted 5-formyltetrahydrofolate cycloligase This protein contains a putative 5-Formyltetrahydrofolate cycloligase domain, but has little homology to the biochemically characterized 5-formyltetrahydrofolate cycloligases. Probably organellar protein. g14412.t1,Cre13.g587450.t1.1,FCL2 PF01812 PTHR13017 KOG4410 6.3.3.2 K01934 GO:0005524,GO:0009396,GO:0030272 AT1G76730.1 - NagB/RpiA/CoA transferase-like superfamily protein Cre01.g019850 FHL3,FTSH3 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - FtsH-like ATPase/metalloprotease FtsH-like ATPase/metalloprotease. FtsH-like protein, probably mitochondrial (by homology to AtFtsH3 and AtFtsH10); metallopeptidase with AAA domain, probably membrane bound. Previously annotated as FTSH3 g462.t1,FHL3 PF01434,PF06480,PF00004 PTHR23076:SF11,PTHR23076 KOG0731 3.4.24.- K08956 GO:0004222,GO:0005524,GO:0006508,GO:0008270,GO:0016021 AT1G07510.1 ftsh10 FTSH protease 10 Cre43.g760497 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g18388.t1 PF02861 PTHR11638:SF19,PTHR11638 - - - GO:0019538 AT5G50920.1 ATHSP93-V,CLPC,CLPC1,DCA1,HSP93-V CLPC homologue 1 Cre10.g447300 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 - - g11002.t1,Cre10.g447300.t1.1 PF00240,PF09668,PF00627 PTHR12917,PTHR12917:SF1 KOG0012 - K11885 GO:0005515,GO:0004190,GO:0006508 AT3G13235.3 - ubiquitin family protein Cre01.g037350 CGLD2,TEH2 - 0 1 1.0 nan 0 1 1.0 nan M Y downregulated 13 Thioesterase-like protein Conserved protein, related to thioesterase family. Previously annotated as CGLD2 g837.t1,CGLD2,TEH2 - PTHR12655 KOG2763 - - - AT2G30720.1 - Thioesterase/thiol ester dehydrase-isomerase superfamily protein Cre03.g211297 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 17 - - g4470.t1,Cre19.g756450.t1.1 - - - - - - AT4G28690.1 - - Cre06.g265100 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 3 - - g5954.t1 PF00005 PTHR19211:SF39,PTHR19211 KOG0927 - - GO:0005524,GO:0016887 AT5G09930.1 ATGCN2,GCN2 ABC transporter family protein Cre06.g284800 - 0 1 1.0 nan 0 1 1.0 nan O n - 3 - - g6622.t1,Cre06.g284800.t1.1 PF01207 PTHR11082,PTHR11082:SF15 - - - GO:0008033,GO:0017150,GO:0050660,GO:0055114 AT4G38890.1 - FMN-linked oxidoreductases superfamily protein Cre10.g439900 HSP70G - 0 2 1.0 1.0 0 2 1.0 1.0 SP n upregulated 2 ER-located HSP110/SSE-like protein One of 9 genes encoding HSP70-like proteins in Chlamydomonas; it is more similar to HSP110-like proteins, as is HSP70E; probably located in the ER lumen, as it homologue Hyou1, by its C-terminal KGEEL sequence g10830.t1,Cre10.g439900.t1.1 PF00012 PTHR19375,PTHR19375:SF8 KOG0104 - K09486 GO:0005524 AT4G16660.1 - heat shock protein 70 (Hsp 70) family protein Cre02.g075750 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g1357.t1 - - - - - - - - - Cre13.g580150 - 0 13 1.0 1.0 0 13 1.0 1.0 SP n - 7 - - g14253.t1, g14253.t2 PF05631 PTHR24003,PTHR24003:SF315 KOG4332 - - - AT4G27720.1 - Major facilitator superfamily protein Cre03.g155150 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 11 - - g3163.t1 PF07173 - - - - - AT4G37900.1 - Protein of unknown function (duplicated DUF1399) Cre17.g701050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 2 - - g16998.t1,Cre17.g701050.t1.1 PF08790 PTHR13100,PTHR13100:SF4 - - - - AT2G19385.1 - zinc ion binding Cre17.g740100 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g17900.t1 PF01753 PTHR13244 - - - GO:0008270 - - - Cre01.g008200 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - - - g209.t1 - - - - - - - - - Cre02.g111300 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 14 - - g2287.t2, g2287.t1 - - - - - - - - - Cre07.g317450 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 15 - - g7339.t1, g7339.t2 - - - - - - - - - Cre13.g565260 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - - - g13907.t1 PF03109 PTHR10566,PTHR10566:SF10 KOG1235 - K08869 - AT1G71810.1 - Protein kinase superfamily protein Cre03.g211745 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 16 - - g4474.t1 PF00501 PTHR24096,PTHR24096:SF27 KOG1176 - - GO:0003824,GO:0008152 AT1G66120.1 - AMP-dependent synthetase and ligase family protein Cre01.g032450 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 8 - - g734.t1,Cre01.g032450.t1.1 PF00839 PTHR11884 - - - GO:0016020 - - - Cre06.g271800 LCI36 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 Low-CO2-inducible membrane protein, putative SWEET glucose efflux transporter Low-CO2 inducible gene related to Arabidopsis senescence-associated protein. Putative SWEET glucose efflux transporter. The predicted amino acid sequence had 11 transmembrane domains and also had two MtN3/saliva family domains (pfam03083). Low-CO2 induc g6099.t1,Cre06.g271800.t1.1, g6099.t2 PF03083 PTHR10791 KOG1623 - - GO:0016021 AT5G13170.1 SAG29 senescence-associated gene 29 Cre02.g098150 XYK1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g1996.t1,Cre02.g098150.t1.1,XYK1 PF02782 PTHR10196:SF1,PTHR10196 - - - GO:0005975,GO:0016773 AT2G21370.1 XK-1,XK1 xylulose kinase-1 Cre12.g559850 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 - - g13322.t1 PF00400 PTHR22839 KOG1407 - K12880 - AT5G56130.1 AtTEX1,TEX1,THO3 Transducin/WD40 repeat-like superfamily protein Cre17.g743947 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g17994.t1,Cre20.g760714.t1.1,Cre20.g760714.t1.2 - - - - - - - - - Cre03.g148300 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g3016.t1,Cre03.g148300.t1.1 - - - - - - - - - Cre12.g552200 STA4,PHOB,PHO3 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 11 Starch phosphorylase Starch phosphorylase (EC 2.4.1.1); identical to PHOB from Chlamydomonas reinhardtii (GenBank ABB88568); Dauvillee et al. 2006 [PMID: 17018036]; catalyses the reversible transfer of a glucosyl unit from the non-reducing end of an alpha-1,4-oligo- or polygl g13494.t1,Cre12.g552200.t1.1,PHO3,PHOB PF00343,PF01842 PTHR11468 KOG2099 2.4.1.1 K00688 GO:0004645,GO:0005975,GO:0008152,GO:0016597 AT3G46970.1 ATPHS2,PHS2 alpha-glucan phosphorylase 2 Cre12.g524750 - 0 9 1.0 1.0 0 9 1.0 1.0 O n upregulated 14 - - g12918.t1,Cre12.g524750.t1.1 PF02661 - - - - - - - - Cre02.g105700 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 5 - - g2167.t1 PF09837 - - - - - - - - Cre06.g288000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g6688.t1 - - - - - - - - - Cre12.g534961 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 16 - - g13159.t1,Cre12.g534961.t1.1 - - - - - - - - - Cre09.g417076 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g10324.t1 - - - - - - - - - Cre03.g194950 RPOD - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 17 Chloroplast RNA polymerase sigma factor, c Chloroplast RNA polymerase sigma factor RpoD, chloroplast precursor [PMID: 16143845] g4037.t1,RPOD PF04545,PF04542,PF04539 - - - - GO:0003677,GO:0003700,GO:0006352,GO:0006355,GO:0016987 AT1G08540.1 ABC1,ATSIG1,ATSIG2,SIG1,SIG2,SIGA,SIGB RNApolymerase sigma subunit 2 Cre12.g488150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g12223.t1 - - - - - - - - - Cre14.g619800 SPO11B - 0 20 1.0 1.0 0 20 1.0 1.0 O n - 13 DNA topoisomerase (type IIB) DNA topoisomerase (type IIB), involved in meiosis; homologous to eukaryotic SPO11. Chlamydomonas has at least two homologues. g14934.t1,Cre14.g619800.t1.1,SPO11B - PTHR10848 - - - GO:0003677,GO:0003824,GO:0005524,GO:0005694,GO:0006259 - - - Cre01.g047218 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g1049.t1,Cre01.g047218.t1.1 PF10184 - - - - - AT1G16320.1 - Uncharacterized conserved protein (DUF2358) Cre08.g358580 CMP1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 2 Carbamoyl phosphate synthase, large subunit Carbamoyl phosphate synthase (glutamate dependent), large subunit (EC 6.3.5.5); Target-P predicts plastid targeting. Previously annotated as CMPL1. Identified in as nitrogen-controlled-gene NCG5 expressed upon nitrogen starvation [PMID: 11469597] g8395.t1,Cre28.g776100.t1.1,Cre28.g776100.t1.2,CMP1 PF02787,PF02142,PF02786,PF00289 PTHR11405:SF15,PTHR11405 KOG0370 6.3.5.5 K01955 GO:0004086,GO:0006807,GO:0003824,GO:0005524,GO:0008152 AT1G29900.1 CARB carbamoyl phosphate synthetase B Cre08.g358583 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g8399.t1 - - - - - - - - - Cre08.g358582 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g8397.t1,Cre28.g776050.t1.1,Cre28.g776050.t1.2 - - - - - - - - - Cre09.g402589 - 0 10 1.0 1.0 0 10 1.0 1.0 SP n - 17 - - g10022.t1,Cre02.g140400.t1.1 PF00211 PTHR11795:SF296,PTHR11795 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre03.g150251 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 8 - - g3056.t1 - - - - - - - - - Cre06.g263500 - 0 5 1.0 1.0 0 5 1.0 1.0 C n upregulated 16 - - g5920.t1,Cre06.g263500.t1.1 PF01951 PTHR12682 KOG4528 - - - - - - Cre08.g384050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9039.t1,Cre08.g384050.t1.1 - - - - - - - - - Cre13.g568450 KIN7-3 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 11 - - g13988.t1,KIN7-3 PF00225 PTHR24115,PTHR24115:SF177 KOG4280 - K11498 GO:0003777,GO:0005524,GO:0007018 AT3G10180.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre02.g112650 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g2320.t1,Cre02.g112650.t1.1 - - - - - - - - - Cre03.g208551 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g4130.t1 PF00078 PTHR19446 - - - GO:0003723,GO:0003964,GO:0006278 - - - Cre07.g350350 FAP217 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 16 Flagellar Associated Protein Flagellar Associated Coiled-Coil Protein, found in the flagellar proteome [PMID: 15998802] g8150.t1,Cre07.g350350.t1.1 - - - - - - - - - Cre02.g116550 DNJ24 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - DnaJ-like protein DnaJ-like protein, perhaps targeted to the chloroplast (contains N-terminal extension that is predicted by ChloroP to be chloroplast transit peptide); contains N-terminal J-domain (pfam00226) and NADPH:quinone reductase and related Zn-dependent oxidoreduc g2412.t1,Cre02.g116550.t1.1 PF08240,PF00226 PTHR11695,PTHR11695:SF15 KOG0025 - - GO:0008270,GO:0016491,GO:0055114,GO:0031072 AT3G45770.1 - Polyketide synthase, enoylreductase family protein Cre01.g003000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g71.t1 - - - - - - - - - Cre09.g394621 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 3 - - g9787.t1,Cre02.g130900.t1.1, g9787.t2,Cre02.g130900.t2.1 PF00686 - KOG0978 - - GO:0003824,GO:0005975 - - - Cre06.g267350 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 11 - - g5999.t1,Cre06.g267350.t1.1 - - - - - - - - - Cre13.g583217 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g14318.t1 PF00583 PTHR23091:SF1,PTHR23091 - - - GO:0008080,GO:0008152 - - - Cre07.g336400 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g7829.t1 - - - - - - - - - Cre06.g289750 CYCD2 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 D-type cyclin D type cyclin; contains LXCXE motif. Putative function in G1/S g6723.t1 PF00134,PF02984 PTHR10177,PTHR10177:SF76 KOG0656 - - GO:0005634 AT5G25380.1 CYCA2;1 cyclin a2;1 Cre09.g391050 CYA9 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 11 - - g9471.t1 PF00211 PTHR12203,PTHR12203:SF14 - 4.6.1.1 K01768 GO:0009190,GO:0016849,GO:0035556 - - - Cre06.g281563 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g6549.t1,Cre06.g281550.t1.3 PF00226 PTHR25040:SF158,PTHR25040 - - - GO:0031072 AT5G49060.1 - Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) Cre13.g590750 HTB37 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 10 Histone H2B Replication-linked Histone H2B g14487.t1,Cre13.g590750.t1.1,HTB37 PF00125 PTHR23428 KOG1744 - K11252 GO:0003677,GO:0000786,GO:0005634,GO:0006334 AT3G45980.1 H2B,HTB9 Histone superfamily protein Cre17.g745247 - 0 3 1.0 1.0 0 3 1.0 1.0 M n downregulated 16 - - g18021.t1,Cre20.g759629.t1.1 - - - - - - - - - Cre06.g297950 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6892.t1,Cre06.g297950.t1.1, g6892.t2 - - - - - - - - - Cre07.g334800 FDX4 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 Ferredoxin Fe2S2 containing redox protein, predicted chloroplast localization g7796.t2,Cre07.g334800.t1.1, g7796.t1 PF00111 - - - K02639 GO:0009055,GO:0051536 AT4G14890.1 - 2Fe-2S ferredoxin-like superfamily protein Cre06.g297904 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g6891.t1,Cre06.g297904.t1.1 PF11969 PTHR12486:SF4,PTHR12486 KOG0562 3.-.-.- K10863 - AT5G01310.1 APTX APRATAXIN-like Cre05.g244000 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g5256.t1 PF07173 - - - - - - - - Cre06.g297900 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g6890.t1 PF04117 PTHR11266 KOG1944 - - GO:0016021 AT4G03410.2 - Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Cre03.g157700 COX5C - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Cytochrome c oxidase 11 kD subunit Cytochrome c oxidase, subunit 5c (mitochondrial precursor)(homolog of complex V subunit 5c of A. thaliana (At3g62400, At2g47380); PMID: 15710684. No counterpart in fungi or animals. g3227.t1,Cre03.g157700.t1.1,COX5C PF05799 - - - - GO:0004129,GO:0005746,GO:0055114 - - - Cre14.g620652 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g14957.t1 - - - - - - - - - Cre07.g315400 NOL1,NOA2 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 Simlar to nitric oxide associated protein protein of CSG family Putative GTPase; shows similarity to plant nitric oxide associated protein (NOA1) g7297.t1,NOA2,NOL1 - PTHR11089:SF3,PTHR11089 KOG1249 - - - AT3G57180.1 BPG2 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre10.g435300 AAP1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Aspartyl aminopeptidase-like protein Similar to Arabidopsis NCBI accession # CAB86013. Probably organelle-located, by TargetP prediction and similarity to AT5G04710 g10736.t1,Cre10.g435300.t1.1,AAP1, g10736.t2,AAP1 PF02127 PTHR10761 KOG2596 3.4.11.21 K01267 GO:0004177,GO:0006508,GO:0008270 AT5G60160.1 - Zn-dependent exopeptidases superfamily protein Cre13.g589940 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g14470.t1 - - - - - - - - - Cre06.g311150 MFT20 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g7199.t1,MFT20 PF07690 PTHR24003,PTHR24003:SF22 KOG1330 - - GO:0016021,GO:0055085 AT4G36790.1 - Major facilitator superfamily protein Cre14.g628400 TSA3 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 - - g15136.t1,Cre14.g628400.t1.1,TSA3 PF07973 PTHR11777 KOG2105 - K07050 GO:0005524,GO:0005737,GO:0006412,GO:0016876,GO:0043039 - - - Cre06.g261900 FAP71 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; in basal body proteome as BUG2 [PMID: 15964273]. Transcript upregulated during flagellar regeneration [PMID: 15738400] g5885.t1,Cre06.g261900.t1.1 - - - - - - - - - Cre07.g314600 RPI2 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 Ribose-5 phosphate isomerase-related protein Possible ribose-5-phosphate isomerase (EC 5.3.1.6), pentose phosphate isomerase; some similarity to Arabidopsis ribose-5 phosphate isomerase-related protein (GenBank NP_199265); Target-P predicts a mitochondrial targeting sequence g7278.t1,Cre07.g314600.t1.1 PF06026 PTHR11934 KOG3075 5.3.1.6 K01807 GO:0004751,GO:0009052 AT5G44520.1 - NagB/RpiA/CoA transferase-like superfamily protein Cre10.g438350 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g10798.t1 - - - - - - - - - Cre01.g055412 - 0 1 1.0 nan 0 1 1.0 nan O Y - - - - g1225.t1 - - - - - - AT5G27290.1 - - Cre10.g435100 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g10732.t1,Cre10.g435100.t1.1 - - - - - - - - - Cre08.g359567 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g8422.t2,Cre08.g359567.t1.1, g8422.t1 - - - - - - - - - Cre07.g342200 IFT70,FAP259,CrDYF-1 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 12 Flagellar Associated Protein Conserved Flagellar Associated coiled-coil protein; TPR protein; found in the flagellar proteome as FAP259 [PMID: 15998802]; similar to dyf-1 (C. elegans); identified in the flagellar basal body proteome [PMID: 15137946]; upregulated by deflagellation g7942.t1,Cre07.g342200.t1.1,FAP259,CrDYF-1 PF07719 PTHR20931 KOG4340 - - - - - - Cre16.g684861 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g16156.t1,Cre01.g064650.t1.1,Cre01.g064650.t1.2 - - - - - - - - - Cre11.g477350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g11853.t1 - - - - - - - - - Cre02.g091567 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g1715.t1, g1715.t2 - - - - - - - - - Cre03.g203200 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g4255.t1 - - - - - - - - - Cre01.g002750 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g65.t1,Cre01.g002750.t1.1, g65.t2 PF07366 - - - - - - - - Cre01.g045100 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g1007.t1,Cre01.g045100.t1.1 - - - - - - - - - Cre14.g617400 HSP22F - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 2 Heat shock protein 22F Small heat shock protein containing an alpha-crystallin domain; N-terminus by TargetP weakly predicted to be chloroplast transit peptide; HSP22F and HSP22E are arranged head-to-head and share 98% identical nucleotide sequence in coding region (96% identic g14876.t1,Cre14.g617400.t1.1 PF00011 PTHR11527,PTHR11527:SF14 - - - - AT1G07400.1 - HSP20-like chaperones superfamily protein Cre09.g390900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g9474.t1 - - - - - - - - - Cre07.g350900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8164.t1 PF00023 - KOG4412 - - GO:0005515 AT2G28840.1 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana Cre03.g182950 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 DEAH-box helicase, possibly nuclear pre-mRNA splicing factor DEAH-box helicase, possibly nuclear pre-mRNA splicing factor. Homologue of S. cerevisiae mRNA splicing helicases Prp2, Prp16, Prp22 and Prp43 which are required at different steps of the spliceosome cycle. Previously annotated as SPLH2 g3792.t1,Cre03.g182950.t1.1 PF00271,PF07717,PF00270,PF04408 PTHR18934 KOG0925 3.6.4.13 K12820 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT3G62310.1 - RNA helicase family protein Cre02.g094300 FUO1 - 0 1 1.0 nan 0 1 1.0 nan M n - 7 Electron transfer flavoprotein-ubiquinone oxidoreductase Putative electron-transferring-flavoprotein dehydrogenase (ETFDH); electron transfer flavoprotein ubiquinone oxidoreductase. g1782.t1,Cre02.g094300.t1.1,FUO1 PF05187,PF00890 PTHR10617:SF1,PTHR10617 KOG2415 1.5.5.1 K00311 GO:0004174,GO:0055114,GO:0009055,GO:0016491 AT2G43400.1 ETFQO electron-transfer flavoprotein:ubiquinone oxidoreductase Cre16.g679520 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g16141.t1 PF07282 PTHR23257,PTHR23257:SF99 - - - - - - - Cre03.g176750 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 15 - - g3652.t1,Cre03.g176750.t1.1 - - - - - - - - - Cre06.g250800 CRB1 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 C1, subunit of the circadian RNA-binding protein CHLAMY1 RNA-binding protein with three KH domains and a protein-protein interaction domain (WW) at the C-terminus; subunit of the circadian RNA-binding protein CHLAMY1 [PMID: 15190002]. Functional analysis by Voytsekh et al. 2008 [PMID: 18567830] g5617.t1,CRB1, g5617.t2,CRB1 PF00397,PF00013 PTHR10288,PTHR10288:SF53 KOG2191 - K13210 GO:0005515,GO:0003723 AT1G33680.1, AT2G25970.1 - KH domain-containing protein Cre16.g650151 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 16 - - g15730.t1,Cre16.g650150.t1.3 PF09336,PF00004 PTHR23074 KOG0738 - - GO:0005524 AT2G45500.1 - AAA-type ATPase family protein Cre13.g591150 HTA38 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 1 Histone H2A - g14497.t1,Cre13.g591150.t1.1,HTA38 PF00125 PTHR23430 KOG1756 - K11251 GO:0003677 AT1G51060.1 HTA10 histone H2A 10 Cre08.g385150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9063.t1 - - KOG2985 - - - - - - Cre12.g497000 FAP14 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; similar to Human / Mouse HEAT - like repeat containing protein; found in the flagellar proteome [PMID: 15998802] g12645.t1,Cre12.g497000.t1.1 - PTHR21467 KOG0211 - - - AT1G13320.1 PP2AA3 protein phosphatase 2A subunit A3 Cre16.g651200 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 14 - - g15753.t1,Cre16.g651200.t1.1 - - - - - - - - - Cre03.g185450 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 16 - - g3843.t1 - - - - - - - - - Cre07.g347050 RSP7 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Radial spoke protein 7 A subunit in the radial spoke stalk with multiple EF-hands tethered to an RIIa domain [PMID: 16507594; GI:83284725] g8077.t1,Cre07.g347050.t1.1 PF02197 PTHR10891:SF81,PTHR10891 KOG0027 - - GO:0007165,GO:0008603 AT1G61950.1 CPK19 calcium-dependent protein kinase 19 Cre03.g201888 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g4383.t1 - - - - - - - - - Cre09.g393284 RLS8 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - RegA/RlsA-like protein Member of a family of proteins related to Volvox carteri RegA, which is a putative transcription repressor (PMID: 9895312) containing a SAND domain (IPR000770 SAND; PF01342). See also: PMID: 16720695 and PMID: 16622701. g9750.t1,Cre02.g129150.t1.1,Cre02.g129150.t1.2,RLS8 PF01342 - - - - GO:0003677,GO:0005634 - - - Cre17.g736050 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g17805.t1,Cre17.g736050.t1.1 - - - - - - - - - Cre49.g761347 FAP221 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 Flagellar Associated Protein, possible magnesium chelatase Flagellar Associated Protein, possible magnesium chelatase, found in the flagellar proteome [PMID: 15998802]. Contains CobN domain, which may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid i g18405.t1,Cre11.g477600.t1.1,Cre11.g477600.t1.2,FAP221 - - - - - - - - - Cre07.g330276 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - - - - g7686.t1 - - - - - - - - - Cre17.g729850 FAP227,C1A-18 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 - - g17638.t1,Cre17.g729850.t1.1,FAP227 PF02493 PTHR23084 - - - - AT1G21920.1 - Histone H3 K4-specific methyltransferase SET7/9 family protein Cre16.g689950 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 13 - - g16195.t1,Cre16.g689950.t1.1 PF08372 - - - - - AT1G51570.1 - Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein Cre03.g161800 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 1 - - g3315.t1,Cre03.g161800.t1.1 PF07728 PTHR22908,PTHR22908:SF24 KOG1808 - K14572 GO:0005524,GO:0016887 AT1G67120.1 - ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding Cre12.g523150 PFD5 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 Prefoldin molecular chaperone, subunit 5 Prefoldin molecular chaperone, subunit 5. Alpha-type subunit of molecular chaperone Prefoldin (PMID: 11599560); KE2 Family protein; contains two coiled-coil domain separated by a beta-sheet; stabilizes polypeptide chains prior to folding within CCT chape g12883.t1,Cre12.g523150.t1.1,PFD5 PF02996 PTHR12674 KOG3048 - K04797 GO:0006457,GO:0016272,GO:0051082 AT5G23290.1 PFD5 prefoldin 5 Cre16.g672100 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g16685.t1 - - - - - - - - - Cre10.g439750 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 14 - - g10827.t1,Cre10.g439750.t1.1 - PTHR25480 - - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre06.g257000 SLP3,SULP3,SBP1 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 2 Sulfate binding protein, component of chloroplast transporter SulP Chloroplast ABC-type sulfate transporter; NCBI accessions AAS20264 (protein) and AY536253 (mRNA); PMID: 15278455. Previously annotated as SBP1. Discussed by Lindberg and Melis 2008 [PMID: 18682979] g5775.t1,Cre06.g257000.t1.1,SLP3,SBP1 PF01547 - - - - GO:0005215,GO:0006810 - - - Cre13.g588150 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 2 - - g14427.t1,Cre13.g588150.t1.1 - PTHR20884,PTHR20884:SF3 KOG2720 2.7.7.69 K14190 - AT5G55120.1 VTC5 galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4\'-O-glucosyltransferases Cre03.g184500 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 10 - - g3823.t1,Cre03.g184500.t1.1 - - - - - - AT5G42480.1 ARC6 Chaperone DnaJ-domain superfamily protein Cre08.g382515 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g9000.t1 PF00400 PTHR22838 KOG0293 - - - AT5G08560.1 - transducin family protein / WD-40 repeat family protein Cre10.g427900 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 16 - - g10569.t1 PF00211 PTHR11017 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre09.g397549 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 5 - - g9867.t1 PF06972 - - - - - AT1G29370.1 - Kinase-related protein of unknown function (DUF1296) Cre13.g563950 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g13877.t1,Cre13.g563950.t1.1 - - - - - - - - - Cre03.g155700 - 0 18 1.0 1.0 0 18 1.0 1.0 C n - 11 - - g3176.t1 - - - - - - - - - Cre05.g237850 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g5472.t1,Cre05.g237850.t1.1 - - - - - - - - - Cre02.g079850 POLK1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 9 DNA polymerase kappa Homologous to eukaryotic DNA polymerase kappa. Involved in DNA damage bypass/translesion synthesis (TLS); a class Y polymerase. See Burgers et al. (2001) (PMID: 11579108). Previously annotated as POLK1 g1459.t1,POLK1 PF00817,PF11799 PTHR11076,PTHR11076:SF12 KOG2094 2.7.7.7 K03511 GO:0003684,GO:0003887,GO:0006281 AT1G49980.1 - DNA/RNA polymerases superfamily protein Cre07.g348550 TGL13 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 10 - - g8109.t2,TGL13, g8109.t1,TGL13 PF01764 PTHR21493:SF9,PTHR21493 - - - GO:0004806,GO:0006629 AT5G18640.1 - alpha/beta-Hydrolases superfamily protein Cre08.g384200 - 0 14 1.0 1.0 0 14 1.0 1.0 O n - 9 - - g9042.t1,Cre08.g384200.t1.1 PF02841,PF02263 PTHR10751,PTHR10751:SF2 KOG2037 - - GO:0003924,GO:0005525 AT5G46070.1 - Guanylate-binding family protein Cre04.g219800 - 0 1 1.0 nan 0 1 1.0 nan M n - 16 - - g4793.t1 - - - - - - - - - Cre09.g389950 OAT1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 O-acetyltransferase-related protein Similar to O-acetyltransferase-related protein of Arabidopsis thaliana; Genbank entry AY136339 g9497.t1,Cre09.g389950.t1.1,OAT1 PF07779 PTHR13533,PTHR13533:SF1 KOG1699 - - - AT2G34410.1 - O-acetyltransferase family protein Cre03.g164350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g3369.t1 PF02230 PTHR10655 KOG2112 - K06999 GO:0016787 AT4G22300.1 SOBER1 carboxylesterases Cre12.g545300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g13653.t1,Cre12.g545300.t1.1 PF01417 PTHR21514 - - - - AT3G16270.1 - ENTH/VHS family protein Cre12.g514200 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g12691.t1,Cre12.g514200.t1.1 PF05199,PF00732 PTHR11552:SF14,PTHR11552 KOG1238 1.1.99.1 K00108 GO:0016614,GO:0050660 AT1G73050.1 - Glucose-methanol-choline (GMC) oxidoreductase family protein Cre10.g464037 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g11370.t1,Cre10.g464037.t1.1 - - - - - - AT4G27660.1 - - Cre10.g449650 - 0 1 1.0 nan 0 1 1.0 nan C n - 14 - - g11054.t1 - - - - - - - - - Cre10.g461000 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g11303.t1,Cre10.g461000.t1.1 PF07539 PTHR17695 - - - - AT4G30990.2 - ARM repeat superfamily protein Cre08.g381350 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 13 - - g8974.t1,Cre08.g381350.t1.1 - - - - - - - - - Cre01.g025000 SSA12 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 Predicted protein Expressed protein of unknown function, conserved only in ciliated organisms; identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA) g574.t1,Cre01.g025000.t1.1,SSA12 PF07856 PTHR12210:SF19,PTHR12210 - - - - - - - Cre06.g305000 - 0 1 1.0 nan 0 1 1.0 nan C n - 13 - - g7060.t1,Cre06.g305000.t1.1 PF00400 PTHR22847 KOG0279 - - - AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre17.g714250 DLC5,DLX2 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 Flagellar outer arm dynein 14 kDa light chain LC5 Dynein light chain, thioredoxin h-type, LC5 [PMID: 862642]. Previously annotated as DLC5 g17295.t1,Cre17.g714250.t1.1,DLC5 PF00085 PTHR10438:SF49,PTHR10438 KOG0907 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT1G69880.1 ATH8,TH8 thioredoxin H-type 8 Cre40.g760197 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g18382.t1 - - - - - - - - - Cre01.g041900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g940.t1 PF09749 PTHR13522 - - - - AT5G51170.1 - - Cre14.g613400 POC16 - 0 13 1.0 1.0 0 13 1.0 1.0 O n - 11 Centriole proteome protein Found in basal body proteome [PMID: 15964273]. g14781.t1,Cre14.g613400.t1.1,POC16 PF00400,PF05018 PTHR13720,PTHR13720:SF6 KOG3213 - - - AT5G49430.1 - WD40/YVTN repeat-like-containing domain;Bromodomain Cre09.g402350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 10 - - g9216.t1,Cre09.g402350.t1.1 PF00498 - - - - GO:0005515 AT4G14490.1 - SMAD/FHA domain-containing protein Cre16.g660750 CC2D2A - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g15958.t1 - - - - - - - - - Cre05.g238500 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 3 - - g5499.t1 - - - - - - AT1G60230.1 - Radical SAM superfamily protein Cre07.g349600 ISCA2,ISC2 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 Putative A-type Fe-S scaffold protein A-type scaffold protein, similar to HesB/YadR protein involved in nitrogen fixation. Previously annotated as ISCA2 g8134.t1,Cre07.g349600.t1.1,ISC2 PF01521 PTHR10072 KOG1120 - - - AT5G03905.1 - Iron-sulphur cluster biosynthesis family protein Cre05.g239450 - 0 28 1.0 1.0 0 28 1.0 1.0 SP n upregulated 2 - - g5523.t1 PF09414 PTHR23339,PTHR23339:SF29 - - - - AT5G01310.1 APTX APRATAXIN-like Cre09.g407450 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 16 - - g10102.t1,Cre09.g407450.t1.1 - - - - - - AT1G73470.1 - - Cre16.g668800 MTA4 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 Predicted protein Unknown protein; a pseudo-gene copy resides in the A region of the mt+ locus [PMID: 11805055]. MTA4 was identified in the genome sequence after publication; independent cDNA sequence, see AY596304. g16259.t1,MTA4 PF07974 - - - - - - - - Cre16.g655000 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g15834.t1 PF04720 - - - - - AT2G39650.1 - Protein of unknown function (DUF506) Cre01.g037900 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g849.t1 - PTHR24772,PTHR24772:SF96 - - - - AT4G37020.1 - - Cre05.g248050 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g5171.t1 - - - - - - - - - Cre06.g303192 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 - - g7020.t1 - - - - - - - - - Cre04.g217150 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g4520.t1 - - - - - - - - - Cre02.g147900 PYK5 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 4 Pyruvate kinase Pyruvate kinase (PK) [EC 2.7.1.40] g2503.t3, g2503.t2, g2503.t1, g2503.t4 PF00224,PF02887 PTHR11817 KOG2323 2.7.1.40 K00873 GO:0000287,GO:0004743,GO:0006096,GO:0030955 AT3G52990.1 - Pyruvate kinase family protein Cre16.g647800 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 16 - - g15680.t1 PF00481 PTHR13832 KOG0698 - - GO:0003824 AT3G17250.1 - Protein phosphatase 2C family protein Cre03.g213089 - 0 1 1.0 nan 0 1 1.0 nan M n - 15 - - g4486.t1,Cre19.g757150.t1.1 - - - - - - - - - Cre03.g182100 IPK - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 14 - - g3774.t1,IPK PF05770 PTHR14217 - - - GO:0000287,GO:0005524,GO:0005622,GO:0032957,GO:0035300,GO:0047325 AT2G43980.1 AtITPK4,ITPK4 inositol 1,3,4-trisphosphate 5/6-kinase 4 Cre12.g488450 VSP3 - 0 1 1.0 nan 0 1 1.0 nan SP n - 18 Extracellular matrix protein Extracellular matrix protein (vegetative cell wall protein) similar to ISG (Volvox carteri) [PMID: 1600938], both are glycoproteins with a hydroxyproline-rich (HR) domain. [PMID: 8000007. ISG Genbank entry X65165; VSP3, L29029; C. incerta ortholog, AY7950 g12216.t1,VSP3 - - - - - - - - - Cre17.g741400 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 17 - - g17933.t1 - PTHR11017,PTHR11017:SF7 - - - - - - - Cre02.g145500 PTK24 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g2555.t1,Cre02.g145500.t1.1,PTK24 PF00069 PTHR23257,PTHR23257:SF99 KOG0589 - - GO:0004672,GO:0005524,GO:0006468 AT3G58640.1 - Mitogen activated protein kinase kinase kinase-related Cre14.g618200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g14893.t1 - - - - - - - - - Cre17.g722050 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g17468.t2, g17468.t1 - PTHR13286,PTHR13286:SF3 - - - - AT1G75060.2 - - Cre05.g236039 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 18 - - g5426.t1,Cre05.g236039.t1.1 - - - - - - - - - Cre08.g375150 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g8839.t1 PF00023,PF11904 PTHR12447 KOG0522 - - GO:0005515 AT3G04470.1 - Ankyrin repeat family protein Cre10.g438500 MOT54,FAP264 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802];identified by comparative genomics as being present only in organisms having motile (MOT) cilia. Contains leucine-rich repeat . MOT54 and FAP264 gene g10801.t1,Cre10.g438500.t1.1,MOT54 - PTHR24114:SF43,PTHR24114 KOG1909 - - - AT1G10510.1 emb2004 RNI-like superfamily protein Cre06.g307400 CCR5 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 12 NOT-complex component Similar to CCR4, component of cytosolic deadenylase complex. Endonuclease/exonuclease/phosphatase family protein g7119.t1,CCR5, g7119.t2,Cre06.g307400.t1.1,CCR5 PF03372 PTHR12121 KOG0620 - - - AT3G18500.3 - DNAse I-like superfamily protein Cre12.g560450 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g13310.t1 - - KOG0978 - - - - - - Cre10.g425501 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g10516.t1 PF12157,PF00439,PF09247 PTHR13900 KOG1995 - K03125 GO:0005515 AT1G32750.1 GTD1,HAC13,HAF01,HAF1,TAF1 HAC13 protein (HAC13) Cre16.g687301 SRH26 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g16345.t1,SRH26 PF00176,PF12054,PF00271,PF02985 PTHR10799:SF225,PTHR10799 KOG0392 - - GO:0003677,GO:0005524,GO:0016817,GO:0003676,GO:0004386,GO:0005515 AT3G54280.1 ATBTAF1,BTAF1,CHA16,CHR16,RGD3 DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases Cre16.g687300 CPLD61 - 0 5 1.0 1.0 0 5 1.0 1.0 C Y - 14 - - g16344.t1,Cre16.g687300.t1.1 PF00805 - - - - - AT2G44920.2 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre10.g444216 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g10923.t1 - - - - - - - - - Cre19.g751197 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g18143.t2,Cre33.g782159.t2.1, g18143.t1,Cre33.g782159.t1.1,Cre33.g782159.t1.2 PF08161 PTHR21576,PTHR21576:SF2 KOG1248 - - - AT2G34357.1 - ARM repeat superfamily protein Cre03.g204689 PDE21 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 18 3\',5\'-cyclic-nucleotide phosphodiesterase Similar to calcium/calmodulin-dependent 3\',5\'-cyclic nucleotide phosphodiesterase IB from Rattus norvegicus. g4408.t1,Cre19.g753800.t1.1,PDE21 PF00233,PF03924 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre17.g707300 PGA3 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n downregulated 14 - - g17137.t1,Cre17.g707300.t1.1,PGA3 PF01553 PTHR23063 KOG4666 2.3.1.23,2.3.1.67 K13510 GO:0008152,GO:0008415 AT1G80950.1 - Phospholipid/glycerol acyltransferase family protein Cre16.g686650 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 7 - - g16360.t1,Cre16.g686650.t1.1 PF09743 - KOG2235 - - - AT3G46220.1 - - Cre09.g399289 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 13 - - g9915.t1,Cre02.g136450.t1.1 PF03110,PF00651 - - - - GO:0003677,GO:0005634,GO:0005515 AT5G43270.1 SPL2 squamosa promoter binding protein-like 2 Cre10.g419200 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 17 - - g10377.t1, g10377.t2 - - KOG0487 - - - - - - Cre05.g240550 TLA1 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 - - g5548.t1,Cre05.g240550.t1.1,TLA1 PF03665 PTHR12941:SF4,PTHR12941 KOG3289 - - - AT5G55940.1 emb2731 Uncharacterised protein family (UPF0172) Cre13.g575800 IGS1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 12 Indole-3-glycerol-phosphate synthase Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS; trpC); involved in tryptophan biosynthesis g14152.t1,Cre13.g575800.t1.1,IGS1 PF00218 - KOG4201 - - GO:0004425 AT2G04400.1 - Aldolase-type TIM barrel family protein Cre06.g287100 CAM11 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g6669.t1,CAM11 PF00036 PTHR10891,PTHR10891:SF41 KOG0027 - - - AT5G37780.1 ACAM-1,CAM1,TCH1 calmodulin 1 Cre09.g389171 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated - - - g9634.t1,Cre02.g124133.t1.1,Cre02.g124133.t1.2 - - - - - - - - - Cre12.g486050 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g12276.t1,Cre12.g486050.t1.1 PF00098,PF00397 - - - - GO:0003676,GO:0008270,GO:0005515 AT2G41020.2 - WW domain-containing protein Cre01.g036350 PMA1 - 0 22 1.0 1.0 0 22 1.0 1.0 M n - 6 - - g817.t1,PMA1 PF00689,PF00702,PF00690,PF00122 PTHR24093,PTHR24093:SF73 KOG0204 - - GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT5G57110.1 ACA8,AT-ACA8 autoinhibited Ca2+ -ATPase, isoform 8 Cre09.g397734 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n downregulated 14 Cytochrome P450, CYP3 superfamily Cytochrome P450, CYP3 superfamily, CYP3A family. The CYP711 clan includes CYP711A1 of Arabidopsis (MAX1). This gene product makes a carotenoid-derived branch inhibiting hormone. The CYP744 family has best BLAST hits to CYP5 family members (thromboxane A2 g9872.t1,Cre02.g134750.t1.1,Cre02.g134750.t1.2 PF00067 PTHR24301,PTHR24301:SF127 KOG0158 1.14.14.1 K07424 GO:0005506,GO:0009055,GO:0016705,GO:0020037 AT2G26170.1 CYP711A1,MAX1 cytochrome P450, family 711, subfamily A, polypeptide 1 Cre14.g623250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 - - g15022.t1 - - - - - - - - - Cre12.g522000 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 - - g12857.t1, g12857.t2 - - - - - - - - - Cre02.g141086 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g2688.t2, g2688.t1 - - - - - - - - - Cre06.g306750 FAP290 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 14 Flagellar Associated Protein Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802]; transcript upregulated during flagellar regeneration [PMID: 15738400] g7106.t1,Cre06.g306750.t1.1 - PTHR10891:SF163,PTHR10891 - - - - AT4G26470.1 - Calcium-binding EF-hand family protein Cre04.g226550 ARS11 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 8 - - g4958.t1,Cre04.g226550.t1.1,ARS11, g4958.t2,ARS11 PF00884 PTHR10342:SF2,PTHR10342 - - - GO:0008152,GO:0008484 - - - Cre03.g194300 - 0 1 1.0 nan 0 1 1.0 nan M n - 5 - - g4021.t1,Cre03.g194300.t1.1 PF00494 PTHR21181:SF10,PTHR21181 KOG4411 - - GO:0009058,GO:0016740 AT1G62730.1 - Terpenoid synthases superfamily protein Cre06.g309000 LCIA,NAR1.2 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 6 Anion transporter Nitrite transporter-homologue, possibly chloroplastic [PMID: 11912227, AY612639]; significant similarities with two anion transporters, the chloroplastic nitrite transporter NAR1 and formate transporters in bacteria; also known as LCIA. nduced by CO2-limi g7150.t1,Cre06.g309000.t1.1,LCIA PF01226 - - - - GO:0005215,GO:0006810,GO:0016020 - - - Cre03.g207900 CYCA1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 11 A-type cyclin Cyclin A homolog; A-type cyclin homolog. Putative function in S/G2/M g4151.t1 PF00134,PF02984 PTHR10177:SF49,PTHR10177 KOG0654 - K06627 GO:0005634 AT1G80370.1 CYCA2;4 Cyclin A2;4 Cre03.g193650 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g4007.t1,Cre03.g193650.t1.1 - PTHR11584:SF165,PTHR11584 - - - - - - - Cre12.g511000 - 0 1 1.0 nan 0 1 1.0 nan M n - 12 - - g12328.t1 - - - - - - - - - Cre16.g671900 PIN4 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 Peptidyl-prolyl cis-trans isomerase, parvulin-type Two-domain protein: N-terminal FHA (forkhead) domain binding phosphoproteins and involved in nuclear signaling; Peptidyl-prolyl cis-trans isomerase(parvulin-type) domain, specific for phosphorylated substrates most similar to AtPIN1 (At2g18040, [PMID: 150 g16689.t1,PIN4 PF00498,PF00639 PTHR10657:SF4,PTHR10657 KOG3259 5.2.1.8 K09578 GO:0005515,GO:0016853 AT2G18040.1 PIN1AT peptidylprolyl cis/trans isomerase, NIMA-interacting 1 Cre07.g314250 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 12 - - g7271.t1 - - - - - - - - - Cre01.g019950 DNJ7 - 0 1 1.0 nan 0 1 1.0 nan O n - - DnaJ-like protein DnaJ-like protein; probably cytosolic, as judged from absence of N-terminal extension and from homology with cytosolic PSI1 from S. pombe; annotation for PSI1: required for nuclear migration during mitosis and for the normal initiation of translation; Als g464.t1,Cre01.g019950.t1.1 PF00226,PF01556 PTHR24077:SF88,PTHR24077 - - K09510 GO:0031072,GO:0006457,GO:0051082 AT2G20560.1 - DNAJ heat shock family protein Cre16.g669850 - 0 1 1.0 nan 0 1 1.0 nan C n - 5 - - g16233.t1,Cre16.g669850.t1.1 - - - - - - - - - Cre17.g730050 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g17643.t1 - - KOG3228 - - - - - - Cre09.g387208 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 17 - - g9580.t1,Cre02.g121600.t1.1,Cre02.g121600.t1.2 PF00069 PTHR24356:SF126,PTHR24356 KOG0616 - - GO:0004672,GO:0005524,GO:0006468 AT5G09890.2 - Protein kinase family protein Cre03.g174050 MRP4 - 0 19 1.0 1.0 0 19 1.0 1.0 M n - 17 ABC transporter, multidrug resistance associated protein Putative ABC transporter, MRP subfamily, membrane protein PMID: 15710683 g3590.t1,Cre03.g174050.t1.1,MRP4 PF00664,PF00005 PTHR24223,PTHR24223:SF199 KOG0054 - K05666 GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT2G34660.1 ATMRP2,EST4,MRP2 multidrug resistance-associated protein 2 Cre02.g085350 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g1579.t1, g1579.t2 - - - - - - - - - Cre09.g387200 CYG28 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 16 Adenylate/guanylate cyclase Similar to guanylyl cyclase beta-3 [Apis mellifera] g9561.t1 PF00211 PTHR11920 - 4.6.1.2 K01769 GO:0009190,GO:0016849,GO:0035556 - - - Cre12.g489550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 14 - - g12194.t1 - - - - - - - - - Cre12.g494000 CGL82 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - - Predicted protein Conserved, expressed protein with meprin and TRAF homology domain g12070.t1,Cre12.g494000.t1.1 PF00917 PTHR24006,PTHR24006:SF29 - - - GO:0005515 AT1G04300.1 - TRAF-like superfamily protein Cre13.g577400 ELG16 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g14188.t1,ELG16 PF03016,PF07974 PTHR11062,PTHR11062:SF12 - - - GO:0016020 AT3G57630.1 - exostosin family protein Cre16.g652000 - 0 6 1.0 1.0 0 6 1.0 1.0 C n downregulated 16 - - g15770.t1 - - - - - - - - - Cre08.g379850 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 1 - - g8942.t1,Cre08.g379850.t1.1 PF00069,PF07714 PTHR23257:SF295,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT2G24360.1 - Protein kinase superfamily protein Cre06.g278284 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g6437.t1 PF00078 - - - - GO:0003723,GO:0003964,GO:0006278 - - - Cre02.g077951 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 17 - - g1408.t1 PF00005 PTHR19229 - - - GO:0005524,GO:0016887 AT3G47780.1 ATATH6,ATH6 ABC2 homolog 6 Cre03.g197150 - 0 7 1.0 1.0 0 7 1.0 1.0 O n upregulated 2 - - g4083.t1 - - - - - - - - - Cre12.g510751 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g12334.t1 - PTHR13078,PTHR13078:SF14 - - - - - - - Cre12.g510750 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g12333.t1 - - - - - - AT3G09180.1 - - Cre06.g271750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g6098.t2, g6098.t1,Cre06.g271750.t1.1 - - - - - - - - - Cre16.g694208 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 9 - - g15596.t1 - - - - - - AT5G12400.1 - DNA binding;zinc ion binding;DNA binding Cre10.g465026 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g11394.t1 - - - - - - - - - Cre14.g631900 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 10 - - g15228.t1,Cre14.g631900.t1.1 PF09412 PTHR12439 - - - GO:0016788 AT4G17100.2 - - Cre16.g694202 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g15590.t1 PF01753 - - - - GO:0008270 AT5G65450.1 UBP17 ubiquitin-specific protease 17 Cre16.g694205 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g15593.t1 - - - - - - - - - Cre01.g052800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g1168.t2, g1168.t1 PF00069 PTHR24055,PTHR24055:SF163 KOG0594, KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT5G64960.1 CDKC2,CDKC;2 cyclin dependent kinase group C2 Cre16.g694207 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 15 - - g15595.t1,Cre72.g794750.t1.1 - - - - - - - - - Cre12.g498350 RBM25,SRS7 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - Pre-mRNA splicing factor, SR-protein-related Pre-mRNA splicing factor, contains SR repeat. Similar to human RNA binding motif protein 25, arginine/serine-rich 16 (Suppressor of white-apricot homolog 2) (Clk4-associating SR-related protein). Previously annotated as RBM25. Most likely alternatively g12618.t1,RBM25,SRS7 PF09750 - KOG2548 - - - AT4G36980.3 - - Cre16.g648600 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 15 - - g15697.t1 PF01753 PTHR12298 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre10.g455451 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 - - g11177.t1,Cre10.g455450.t1.3 - - - - - - - - - Cre06.g294050 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 11 - - g6808.t1 - PTHR22640 - - - - - - - Cre17.g735600 TGL21 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g17795.t1,Cre17.g735600.t1.1,TGL21 PF01764 - - - - GO:0004806,GO:0006629 AT2G44810.1 DAD1 alpha/beta-Hydrolases superfamily protein Cre14.g616301 - 0 1 1.0 nan 0 1 1.0 nan SP n - 16 - - g14847.t1 - - - - - - - - - Cre12.g488600 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 13 - - g12213.t1 PF01547 - - - - GO:0005215,GO:0006810 - - - Cre12.g528400 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated - - - g13012.t1 - PTHR22938 KOG2231 - - - AT3G62240.1 - RING/U-box superfamily protein Cre17.g732951 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17712.t1 - - - - - - - - - Cre02.g117850 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g2445.t1,Cre02.g117850.t1.1 PF00443,PF06337 PTHR24006,PTHR24006:SF197 - 3.1.2.15 K11835 GO:0004221,GO:0006511 AT4G10570.1 UBP9 ubiquitin-specific protease 9 Cre17.g723150 ERO1 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 Endoplasmic reticulum oxidoreductin Expressed Protein of endoplasmic reticulum oxidoreductin 1 (ERO1) family. Similar to conserved protein involved in redox reactions in the ER lumen. g17493.t1,ERO1 PF04137 PTHR12613 KOG2608 - - GO:0005789,GO:0006467,GO:0016671,GO:0050660,GO:0055114 AT2G38960.2 AERO2,ERO2 endoplasmic reticulum oxidoreductins 2 Cre10.g454850 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 17 - - g11164.t1,Cre10.g454850.t1.1 PF00170 - - - - GO:0003700,GO:0006355,GO:0043565,GO:0046983 - - - Cre15.g636700 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 16 - - g15357.t1 - - - - - - - - - Cre14.g630301 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 15 - - g15179.t1 PF01985 - - - - GO:0003723 AT3G01370.1 ATCFM2,CFM2 CRM family member 2 Cre04.g217917 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated - - - g4548.t1,Cre03.g210800.t1.1,Cre03.g210800.t1.2 - - - - - - AT3G53200.1 AtMYB27,MYB27 myb domain protein 27 Cre10.g439250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 11 - - g10817.t1,Cre10.g439250.t1.1 - - - - - - - - - Cre11.g482626 - 0 1 1.0 nan 0 1 1.0 nan O n upregulated 3 - - g11981.t1,Cre11.g482626.t1.1 - - - - - - AT1G15350.3 - - Cre16.g681850 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 6 - - g16467.t1,Cre16.g681850.t1.1 PF00485 PTHR10285 KOG4203 2.7.1.48 K00876 GO:0005524,GO:0008152,GO:0016301 AT3G27440.1 UKL5 uridine kinase-like 5 Cre02.g095000 PLA2 - 0 1 1.0 nan 0 1 1.0 nan SP n - 7 Phospholipase A2 Phospholipase A2 protein, similar to Arabidopsis thaliana At4g29460 g1928.t1,Cre02.g095000.t1.1,PLA2 - - - - - - AT2G19690.2 PLA2-BETA phospholipase A2-beta Cre10.g436400 - 0 5 1.0 1.0 0 5 1.0 1.0 C n upregulated 5 - - g10759.t1 - PTHR13271 - - - - - - - Cre13.g579000 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 11 - - g14223.t1 - - - - - - - - - Cre16.g653750 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g15808.t1,Cre16.g653750.t1.1 - - - - - - - - - Cre12.g560668 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g13305.t1,Cre12.g560668.t1.1 PF00069 PTHR24055:SF152,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT3G48750.1 CDC2,CDC2A,CDC2AAT,CDK2,CDKA1,CDKA;1 cell division control 2 Cre12.g536950 - 0 4 1.0 1.0 0 4 1.0 1.0 O n downregulated 1 - - g13204.t1 - - - - - - - - - Cre06.g269801 - 0 10 1.0 1.0 0 10 1.0 1.0 C n upregulated 5 - - g6053.t1 PF01636,PF03109 PTHR10566,PTHR10566:SF10 KOG1235 - - - AT3G24190.1 - Protein kinase superfamily protein Cre02.g076600 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 2 - - g1376.t1,Cre02.g076600.t1.1 PF01195 PTHR17224 KOG2255 3.1.1.29 K01056 GO:0004045,GO:0006412 AT1G18440.1 - Peptidyl-tRNA hydrolase family protein Cre12.g546300 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 8 - - g13629.t1,Cre12.g546300.t1.1 PF09728 PTHR16127:SF13,PTHR16127 KOG1850 - - - AT5G50840.2 - - Cre14.g627650 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 14 - - g15118.t1 - - - - - - - - - Cre09.g395806 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 7 Putative zeaxanthin epoxidase Putative zeaxanthin epoxidase. This overlaps with FAP177 gene model from v3 g9819.t1,Cre02.g132400.t1.1,Cre02.g132400.t1.2 PF01494 PTHR13789,PTHR13789:SF63 - - - GO:0004497,GO:0055114 AT5G67030.2 ABA1,ATABA1,ATZEP,IBS3,LOS6,NPQ2,ZEP zeaxanthin epoxidase (ZEP) (ABA1) Cre06.g274700 OTU4 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 17 - - g6160.t1,OTU4 PF02338 PTHR13312 KOG3288 - - - AT1G50670.1 - OTU-like cysteine protease family protein Cre09.g395800 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g9373.t1,Cre09.g395800.t1.1 PF05907 PTHR12857 KOG1296 - - - AT4G32930.1 - - Cre12.g498050 CPS3 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Subunit of mRNA cleavage and polyadenylation specificity factor CPSF 73 kDa subunit involved in maturation of 3\' end of mRNA; contains an RNA-metabolising metallo-beta-lactamase domain g12624.t1,Cre12.g498050.t1.1,CPS3 PF11718,PF00753,PF07521,PF10996 PTHR11203,PTHR11203:SF11 KOG1137 3.1.27.- K14403 GO:0016787 AT1G61010.1 CPSF73-I cleavage and polyadenylation specificity factor 73-I Cre16.g673505 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 14 - - g16712.t1,Cre01.g065500.t1.1 - - - - - - - - - Cre06.g267400 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 6 - - g6000.t1,Cre06.g267400.t1.1 PF07714 PTHR23257,PTHR23257:SF99 KOG0661 - - GO:0004672,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre03.g145187 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 13 - - g2923.t1,Cre01.g058550.t1.1,Cre01.g058550.t1.2 - - - - - - - - - Cre06.g287950 SRH13 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 9 - - g6687.t1,SRH13 PF00176,PF00271 PTHR10799,PTHR10799:SF53 - - - GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT1G08600.1 ATRX,CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre13.g590626 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g14484.t1 - - - - - - - - - Cre04.g228650 - 0 18 1.0 1.0 0 18 1.0 1.0 SP n - 9 - - g5003.t1,Cre04.g228650.t1.1 PF00664,PF00005 PTHR24223 KOG0054 - - GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT2G34660.1 ATMRP2,EST4,MRP2 multidrug resistance-associated protein 2 Cre16.g672050 - 0 1 1.0 nan 0 1 1.0 nan O n - 9 - - g16686.t1, g16686.t2 PF01118 PTHR14097 - - - GO:0005737,GO:0006520,GO:0016620,GO:0051287 AT3G18890.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre14.g627950 SRD2 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 11 - - g15128.t1,Cre14.g627950.t1.1,SRD2 PF02544 PTHR10556,PTHR10556:SF2 KOG1638 - - GO:0005737,GO:0006629,GO:0016021,GO:0016627 AT2G38050.1 ATDET2,DET2,DWF6 3-oxo-5-alpha-steroid 4-dehydrogenase family protein Cre16.g678050 SRS14 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 8 - - g16554.t1,SRS14 PF01480 PTHR23148 KOG2146 - K13171 GO:0006397 AT2G29210.1 - splicing factor PWI domain-containing protein Cre07.g343933 EBM6 - 0 6 1.0 1.0 0 6 1.0 1.0 C n - 8 - - g8002.t2,EBM6, g8002.t1,EBM6 PF00150 - - - - GO:0004553,GO:0005975 AT1G02310.1 MAN1 Glycosyl hydrolase superfamily protein Cre13.g590550 COA5 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 6 - - g14482.t1,COA5 - PTHR24702 - 2.7.1.24,2.7.7.3 K02318 - AT2G18250.1 ATCOAD,COAD 4-phosphopantetheine adenylyltransferase Cre13.g582201 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g14295.t1,Cre13.g582200.t1.2 PF00293 PTHR13622,PTHR13622:SF2 KOG4313 - - GO:0016787 AT5G19470.1 atnudt24,NUDT24 nudix hydrolase homolog 24 Cre02.g105000 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 12 - - g2151.t1 - - - - - - - - - Cre12.g507050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g12422.t1,Cre12.g507050.t1.1 - - - - - - - - - Cre12.g507051 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - - - - g12423.t1,Cre12.g507029.t1.2 PF00251 - - - - - AT1G12240.1 ATBETAFRUCT4,VAC-INV Glycosyl hydrolases family 32 protein Cre16.g667900 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 10 - - g16280.t1 PF00847 PTHR11795:SF332,PTHR11795 - - K09285 GO:0003700,GO:0006355 AT5G57390.1 AIL5,CHO1,EMK AINTEGUMENTA-like 5 Cre09.g402900 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 16 - - g9204.t1 - - - - - - - - - Cre14.g627488 - 0 1 1.0 nan 0 1 1.0 nan O n - 4 - - g15115.t1 PF02934,PF02637 PTHR11659 - 6.3.5.6,6.3.5.7 K02434 GO:0006412,GO:0016874,GO:0016884 AT1G48520.1 GATB GLU-ADT subunit B Cre01.g002227 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g53.t1,Cre01.g002227.t1.1 - - - - - - - - - Cre03.g145727 - 0 1 1.0 nan 0 1 1.0 nan O n - 5 - - g2951.t1,Cre01.g059850.t1.1,Cre01.g059850.t1.2 PF00579 PTHR11946,PTHR11946:SF34 KOG2144 6.1.1.1 K01866 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418 AT2G33840.1 - Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial Cre16.g673001 LCI2 - 0 13 1.0 1.0 0 13 1.0 1.0 C n upregulated 4 - - g16665.t1,Cre16.g672950.t2.1, g16665.t2,Cre16.g672950.t1.2 PF10520 - KOG3011 - - - AT1G77490.1, AT4G27030.1 TAPX, FAD4,FADA fatty acid desaturase A, thylakoidal ascorbate peroxidase Cre02.g092850 DLU1,DLC1,LC1 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 12 Flagellar outer dynein arm light chain, LC1 Outer dynein arm light chain 1, LC1. Mutants in this gene were characterized by Patel-King and King, PMID: 19620633. Previously annotated as DLC1 g1741.t1,Cre02.g092850.t1.1,DLC1,LC1 PF00560 PTHR10588:SF28,PTHR10588 - - K10411 GO:0005515 AT1G48540.1 - Outer arm dynein light chain 1 protein Cre03.g173850 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g3586.t1 PF01753 - - - - GO:0008270 AT1G67340.1 - HCP-like superfamily protein with MYND-type zinc finger Cre09.g390652 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g9674.t3, g9674.t2, g9674.t1 - - - - - - - - - Cre07.g324300 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - - - - g7492.t1,Cre07.g324300.t1.1 - - - - - - - - - Cre16.g648100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g15686.t1 PF00400 PTHR10709 KOG1523 - K05757 - AT2G30910.1 ARPC1,ARPC1A actin-related protein C1A Cre06.g278700 - 0 2 1.0 1.0 0 2 1.0 1.0 C n downregulated 12 - - g6481.t1 - PTHR24139:SF199,PTHR24139 KOG4214 - - - AT2G26650.1 AKT1,ATAKT1,KT1 K+ transporter 1 Cre07.g322300 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 10 - - g7446.t1 PF06733 PTHR11472:SF5,PTHR11472 KOG1133 3.6.4.13 K11273 GO:0003677,GO:0004003,GO:0005524 AT1G79890.1 - RAD3-like DNA-binding helicase protein Cre04.g226126 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g4946.t1 - - - - - - - - - Cre10.g430800 - 0 2 1.0 1.0 0 2 1.0 1.0 C n upregulated 5 - - g10638.t1 PF03109 PTHR10566:SF23,PTHR10566 KOG1236 - - - AT1G61640.1 - Protein kinase superfamily protein Cre04.g217400 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g4526.t1,Cre04.g217400.t1.1 - - - - - - - - - Cre13.g591600 CYG40 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 18 Adenylate/guanylate cyclase - g14506.t1 PF00211 PTHR11920,PTHR11920:SF117 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre08.g375450 SDR13 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 7 - - g8845.t1,Cre08.g375450.t1.1,SDR13 PF00106 PTHR24316:SF98,PTHR24316 KOG1208 - - GO:0008152,GO:0016491 AT4G23430.2 - NAD(P)-binding Rossmann-fold superfamily protein Cre10.g466900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11442.t1,Cre10.g466900.t1.1 - - - - - - - - - Cre06.g293051 AMT3 - 0 8 1.0 1.0 0 8 1.0 1.0 SP Y - 9 - - g6788.t1,AMT3 PF00909,PF05021 PTHR11730:SF8,PTHR11730 KOG0682 - - GO:0008519,GO:0016020,GO:0072488 AT4G13510.1 AMT1;1,ATAMT1,ATAMT1;1 ammonium transporter 1;1 Cre07.g331250 - 0 10 1.0 1.0 0 10 1.0 1.0 C n downregulated 16 - - g7707.t1 PF03190 PTHR12145 KOG2244 - - - AT4G03200.1 - catalytics Cre10.g432400 OPR46 - 0 3 1.0 1.0 0 3 1.0 1.0 C n downregulated 12 - - g10670.t1,Cre10.g432400.t1.1 - - KOG2945 - - - - - - Cre10.g445800 - 0 7 1.0 1.0 0 7 1.0 1.0 C n downregulated 11 - - g10968.t1 - - - - - - - - - Cre17.g738050 AGG4 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 Flagellar membrane protein, paralog of AGG2 Isolated as a detergent resistant membrane protein from flagellar membranes g17853.t1,Cre17.g738050.t1.1,AGG4 PF04749 PTHR15907,PTHR15907:SF15 - - - - AT3G18470.1 - PLAC8 family protein Cre02.g119150 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g2472.t1,Cre02.g119150.t1.1 PF00169 - - - - GO:0005515 - - - Cre17.g716800 XUV7 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 6 Xanthine/uracil/vitamin C permease-like, sodium-dependent - g17353.t1,Cre17.g716800.t1.1 PF00860 PTHR11119,PTHR11119:SF8 KOG1292 - - GO:0005215,GO:0006810,GO:0016020,GO:0055085 AT2G05760.1 - Xanthine/uracil permease family protein Cre12.g521600 EEP7 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 12 - - g12849.t1,EEP7 PF03372 PTHR15822,PTHR15822:SF3 KOG2756 - - - - - - Cre09.g387430 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g9586.t3, g9586.t2, g9586.t1 - - - - - - - - - Cre15.g639134 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g15427.t1,Cre15.g639134.t1.1 - - - - - - - - - Cre15.g639136 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g15428.t1 - - - - - - - - - Cre14.g619300 CYN16 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 4 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type [PMID: 15051864, PMID:15047905]; no clear ortholog in Arabidopsis; probably cytosolic g14924.t1 PF00160 PTHR11071,PTHR11071:SF99 KOG0879 - - GO:0003755,GO:0006457 AT2G29960.1 ATCYP5,CYP19-4,CYP5 cyclophilin 5 Cre06.g265800 PRPL28 - 0 1 1.0 nan 0 1 1.0 nan C Y - 4 Plastid ribosomal protein L28 Chloroplast ribosomal protein L28, imported to chloroplast; Chloroplast large ribosomal subunit protein L28 g5967.t1,Cre06.g265800.t1.1 PF00830 - - - - GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT2G33450.1 - Ribosomal L28 family Cre09.g406950 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g10088.t1 - - - - - - - - - Cre10.g428966 - 0 8 1.0 1.0 0 8 1.0 1.0 O n upregulated 8 - - g10597.t1,Cre10.g428966.t1.1 - - - - - - - - - Cre03.g181000 - 0 1 1.0 nan 0 1 1.0 nan SP n - 11 - - g3751.t1 PF03567 - - - - GO:0008146,GO:0016021 - - - Cre13.g566450 ROC104 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g13938.t1,Cre13.g566450.t1.1,ROC104 PF00069,PF07714 PTHR23257,PTHR23257:SF99 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre17.g720183 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 14 - - g17430.t2,Cre17.g720200.t1.2, g17430.t1,Cre17.g720200.t2.1 PF01809 - - - - - AT3G09310.1 - - Cre12.g518750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g12789.t1 - - - - - - - - - Cre12.g555750 CPK7 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 5 - - g13417.t1,Cre12.g555750.t1.1,CPK7 PF00294 PTHR10584 - - - - - - - Cre03.g169250 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g3484.t1 - - - - - - - - - Cre06.g292900 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 5 - - g6785.t1 - PTHR12270,PTHR12270:SF15 - - K09668 - - - - Cre10.g433750 PAP1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - PAP1 nuclear poly(A) polymerase Nuclear poly(A) polymerase g10699.t1,PAP1 PF04926,PF01909,PF04928 PTHR10682 KOG2245 2.7.7.19 K14376 GO:0003723,GO:0004652,GO:0005634,GO:0043631,GO:0016779,GO:0006351 AT1G17980.1 PAPS1 poly(A) polymerase 1 Cre01.g026900 SSA14 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 7 Kynurenine 3-monooxygenase Kynurenine 3-monooxygenase. Identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia; may have role in sensing, structure and/or assembly (SSA). Previously annotated as SSA14. Catalyzes the formatio g616.t2,SSA14, g616.t1,Cre01.g026900.t1.1,SSA14 PF01494 PTHR13789:SF100,PTHR13789 KOG2614 - - GO:0004497,GO:0055114 AT2G29720.1 CTF2B FAD/NAD(P)-binding oxidoreductase family protein Cre06.g300001 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - - - - g6939.t1 - - - - - - - - - Cre10.g464500 PDO1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 18 - - g11382.t1,Cre10.g464500.t1.1,PDO1 PF01323 - - - - GO:0015035,GO:0030288 AT5G38900.1 - Thioredoxin superfamily protein Cre12.g515050 SET4,HLM18 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 Histone-lysine N-methyltransferase Protein contains a SET domain with similarity to Arabidopsis thaliana ATX5, SET29, SDG29 (At5g53430); [PMID: 16100335]. Previously annotated as SET4. ChromoDB SDG3411 g12708.t1,HLM18,SET4 PF00628,PF01342,PF00856 PTHR13793,PTHR13793:SF46 KOG1085 - - GO:0005515,GO:0003677,GO:0005634 AT3G61740.1 ATX3,SDG14 SET domain protein 14 Cre10.g458800 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g11254.t1,Cre10.g458800.t1.1 - - - - - - - - - Cre17.g732566 - 0 16 1.0 1.0 0 16 1.0 1.0 SP n - 10 - - g17703.t1 - - - - - - - - - Cre04.g232202 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n - 13 - - g5060.t1,Cre32.g781250.t1.1 - - - - - - - - - Cre03.g151000 DSP8 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 12 Dual-specificity protein phosphatase Dual-specificity protein phosphatase homolog. PTEN-related phosphatase g3073.t1,Cre03.g151000.t1.1,DSP8 PF00782 PTHR10343,PTHR10343:SF15 - - - GO:0006470,GO:0008138 AT3G52180.1 ATPTPKIS1,ATSEX4,DSP4,SEX4 dual specificity protein phosphatase (DsPTP1) family protein Cre03.g168700 PGP1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 4 Phosphoglycolate phosphatase/4-nitrophenylphosphatase Phosphoglycolate phosphatase (EC 3.1.3.18), chloroplast precursor with putative stromal localization; CO2-responsive gene; matches with published cDNA [GenBank AB091101, PMID: 11581250]. Probably a 4-nitrophenylphosphatase. Identified by Kerk et al. 200 g3472.t1,Cre03.g168700.t1.1,PGP1 - PTHR19288:SF6,PTHR19288 KOG2882 - - - AT5G36700.1 ATPGLP1,PGLP1 2-phosphoglycolate phosphatase 1 Cre13.g569600 - 0 6 1.0 1.0 0 6 1.0 1.0 C n upregulated 4 - - g14015.t1,Cre13.g569600.t1.1 PF03992 - KOG1574 - - GO:0005737,GO:0016491,GO:0017000 - - - Cre07.g344300 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g8012.t1,Cre07.g344300.t1.1 PF00023 - - - - GO:0005515 - - - Cre10.g421550 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 17 - - g10431.t2, g10431.t1 PF03110 - - - - GO:0003677,GO:0005634 AT2G42200.1 SPL9 squamosa promoter binding protein-like 9 Cre02.g092076 - 0 8 1.0 1.0 0 8 1.0 1.0 SP n - 12 - - g1725.t1 - - - - - - - - - Cre12.g507600 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g12406.t1,Cre12.g507600.t1.1 - - - - - - - - - Cre16.g681051 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g16485.t1 - - - - - - - - - Cre15.g644051 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g15504.t1,Cre15.g643800.t1.3 PF07728 - - - - GO:0005524,GO:0016887 - - - Cre05.g234200 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g5089.t1,Cre05.g234200.t1.1 PF01424 - - - - GO:0003676 - - - Cre02.g113200 GLN1,NSG18 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 11 Glutamine synthetase Glutamine synthetase (EC 6.3.1.2), CO2-responsive gene; glutamine synthetase, cytosolic isozyme (Glutamate--ammonia ligase) (GS1), CO2-responsive gene; identical to GLNA1_CHLRE cDNA [Swissprot Q42688), PMID: 8938407]. Identified by Abe et al. 2004 [PMID: g2331.t1,NSG18 PF03951,PF00120 PTHR20852:SF14,PTHR20852 KOG0683 6.3.1.2 K01915 GO:0004356,GO:0006542,GO:0006807 AT3G17820.1 ATGSKB6,GLN1.3,GLN1;3 glutamine synthetase 1.3 Cre17.g701300 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 9 - - g17003.t1,Cre17.g701300.t1.1 PF04802 PTHR23318 KOG2175 - - - AT3G06670.1 - binding Cre03.g200850 - 0 1 1.0 nan 0 1 1.0 nan SP n downregulated 13 - - g4308.t1,Cre03.g200850.t1.1 - - - - - - - - - Cre06.g267100 SRP68 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - Subunit of the Signal Recognition Particle Conserved Hypothetical Protein. Similar to the SRP68 subunit of the Signal Recognition Particle. Involved in ER protein translocation. g5994.t1,Cre06.g267100.t1.1,SRP68 - PTHR12860 KOG2460 - K03107 - AT5G61970.1 - signal recognition particle-related / SRP-related Cre24.g755747 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g18263.t1,Cre05.g231600.t1.1 - - - - - - - - - Cre17.g701809 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 15 - - g17014.t1,Cre17.g701809.t1.1 - PTHR24362,PTHR24362:SF143 - - - - - - - Cre10.g450800 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g11078.t1,Cre10.g450800.t1.1 - - - - - - - - - Cre01.g034325 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 18 - - g774.t1,Cre01.g034342.t1.2 - - - - - - - - - Cre13.g580976 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g14270.t1 - - - - - - - - - Cre17.g715050 RAB28 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 Small Rab-related GTPase Expressed Protein. Similar to Rab28-like proteins from mammals and protists. g17310.t1,Cre17.g715050.t1.1,RAB28 PF00071 PTHR24073,PTHR24073:SF350 KOG0078 - - - AT3G53610.1 ATRAB8,AtRab8B,AtRABE1a,RAB8 RAB GTPase homolog 8 Cre03.g150350 CPLD70 - 0 6 1.0 1.0 0 6 1.0 1.0 M Y upregulated 1 - - g3058.t1 - PTHR10887:SF140,PTHR10887 KOG1803 - - - AT2G19120.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre07.g329950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 7 - - g7679.t1 - - - - - - - - - Cre08.g377600 - 0 6 1.0 1.0 0 6 1.0 1.0 SP n upregulated 17 - - g8891.t1 - - - - - - AT4G08540.1 - DNA-directed RNA polymerase II protein Cre17.g721000 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n upregulated 17 - - g17448.t1,Cre17.g721000.t1.1 PF00005 PTHR19229 - - - GO:0005524,GO:0016887 AT3G47740.1 ATATH2,ATH2 ABC2 homolog 2 Cre10.g420600 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g10410.t1 - - - - - - - - - Cre10.g435800 CSP41b,SNE11 - 0 1 1.0 nan 0 1 1.0 nan C n - 15 NAD-dependent epimerase/dehydratase NAD-dependent epimerase/dehydratase, possibly with UDP-glucose 4-epimerase activity. Possible chloroplast stem-loop-binding protein 41b, cp ribosome-associated protein RAP38. Previously annotated as CSP41b g10746.t1,Cre10.g435800.t1.1,CSP41b,SNE11 PF01370 PTHR10366,PTHR10366:SF67 KOG1371 - - GO:0003824,GO:0044237,GO:0050662 AT1G09340.1 CRB,CSP41B chloroplast RNA binding Cre06.g301100 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 17 - - g6966.t1 PF04232 - - - - - - - - Cre01.g036050 MLH1 - 0 7 1.0 1.0 0 7 1.0 1.0 M n - 10 DNA mismatch repair protein MutL homolog; involved in DNA mismatch repair, together with MSH proteins [PMID: 17992532]. Forms a complex with MutS (see MSH genes) g811.t1 PF01119,PF02518 PTHR10073,PTHR10073:SF11 KOG1979 - K08734 GO:0005524,GO:0006298,GO:0030983,GO:0005634 AT4G09140.1 ATMLH1,MLH1 MUTL-homologue 1 Cre01.g001700 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 17 - - g42.t1 PF00069 PTHR23257,PTHR23257:SF367 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre01.g004950 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - - - - g120.t1 PF01965 PTHR11019,PTHR11019:SF30 - - - - - - - Cre06.g304550 PAN2,PAR1 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 Poly(A)-ribonuclease Sequence similarity with PAB-dependent poly(A)-specific ribonuclease subunit PAN2 (PAB1P-dependent poly(A)-nuclease) human, yeast. Also similar to ubiquitin specific protease 52 (usp52). Previously annotated as PAN2 but this conflicts with the series rel g7050.t1,PAN2,PAR1 PF00929 PTHR15728 - 3.1.13.4 K12571 - AT5G25800.1 - Polynucleotidyl transferase, ribonuclease H-like superfamily protein Cre17.g719600 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 - - g17414.t1,Cre17.g719600.t1.1 - - - - - - - - - Cre17.g716650 - 0 2 1.0 1.0 0 2 1.0 1.0 M n downregulated 17 - - g17350.t1,Cre17.g716650.t1.1 - - - - - - - - - Cre13.g605500 - 0 4 1.0 1.0 0 4 1.0 1.0 O n upregulated 1 - - g14604.t1 - - - - - - - - - Cre02.g143861 - 0 1 1.0 nan 0 1 1.0 nan SP n - 9 - - g2604.t1,Cre02.g143861.t1.1 - - - - - - - - - Cre10.g438783 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - - - - g10807.t2,Cre10.g438800.t1.3, g10807.t1,Cre10.g438800.t2.1 - - - - - - - - - Cre07.g350000 TGL14 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 13 - - g8143.t1,TGL14 PF01764 - - - - GO:0004806,GO:0006629 AT4G13550.1 - triglyceride lipases;triglyceride lipases Cre15.g635067 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 7 - - g15316.t1 - - - - - - - - - Cre09.g391245 - 0 1 1.0 nan 0 1 1.0 nan O n - 17 - - g9690.t1,Cre02.g126650.t1.1,Cre02.g126650.t1.2 PF00069 PTHR24348,PTHR24348:SF37 KOG0595 2.7.11.1 K08269 GO:0004672,GO:0005524,GO:0006468 AT2G37840.1 - Protein kinase superfamily protein Cre02.g102350 APG3 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 Autophagy-related protein Expressed Protein. Similar to Aut1p/Apg3p protein involved in autophagy.; Conjugates the ubiquitin-like protein APG8 to lipid molecules during autophagy g2090.t1,Cre02.g102350.t1.1,APG3 PF03986,PF10381,PF03987 PTHR12866 KOG2981 - K08343 - AT5G61500.1 ATATG3,ATG3 autophagy 3 (APG3) Cre02.g084873 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g1567.t1,Cre02.g084873.t1.1 - - - - - - - - - Cre02.g106850 TPR6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 8 - - g2190.t1,Cre02.g106850.t1.1,TPR6 - PTHR22904:SF168,PTHR22904 - - - - AT1G04190.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre16.g650050 - 0 6 1.0 1.0 0 6 1.0 1.0 C n upregulated 6 - - g15728.t1,Cre16.g650050.t1.1 PF00581 - KOG1530 - - - AT4G27700.1 - Rhodanese/Cell cycle control phosphatase superfamily protein Cre05.g246300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 - - g5209.t1,Cre05.g246300.t1.1 PF10508 PTHR13554,PTHR13554:SF8 - - - - AT3G15180.1 - ARM repeat superfamily protein Cre12.g496250 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g12661.t1 - - - - - - - - - Cre11.g468100 PDE30 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 18 - - g11745.t1,Cre11.g468100.t1.1,PDE30 PF00233 PTHR11347:SF75,PTHR11347 - - - GO:0004114,GO:0007165 - - - Cre06.g266250 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 15 - - g5976.t1,Cre06.g266250.t1.1 PF00069 PTHR24347,PTHR24347:SF115 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT1G16270.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre12.g547200 PTK6 - 0 11 1.0 1.0 0 11 1.0 1.0 M n downregulated 18 Putative tyrosine kinase Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g13609.t1,PTK6 PF00069,PF07714 PTHR23257:SF360,PTHR23257 KOG1187 - - GO:0004672,GO:0005524,GO:0006468 AT5G49470.4 - PAS domain-containing protein tyrosine kinase family protein Cre03.g184200 - 0 9 1.0 1.0 0 9 1.0 1.0 C n - 9 - - g3817.t1 - - - - - - - - - Cre16.g683900 GDPD2,GDP2 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - Glycerophosphoryl diester phosphodiesterase family protein Glycerophosphoryl diester phosphodiesterase family protein. Previously annotated as GDPD2 g16424.t1,GDP2,GDPD2 PF03009 PTHR23344 KOG2258 3.1.4.46 K01126 GO:0006071,GO:0008889 AT5G08030.1 - PLC-like phosphodiesterases superfamily protein Cre11.g481700 SPL17 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g11960.t2,SPL17, g11960.t1,SPL17 PF01805,PF09750, PF01805 PTHR13161,PTHR13161:SF11 KOG0106, KOG1847 - - GO:0003723,GO:0006396 AT5G55100.2, AT5G55100.1 - SWAP (Suppressor-of-White-APricot)/surp domain-containing protein Cre06.g266700 HTA39 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g5986.t1,Cre06.g266700.t1.1,HTA39 PF00125 PTHR23430 KOG1756 - K11251 GO:0003677 AT1G51060.1 HTA10 histone H2A 10 Cre03.g152850 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n - 8 - - g3112.t1,Cre03.g152850.t1.1 PF01436,PF03712,PF01082 PTHR10680 KOG3567 1.14.17.3 K00504 GO:0005515,GO:0004497,GO:0005507 - - - Cre10.g463500 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 13 - - g11359.t1 PF00069 PTHR24349:SF122,PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT3G21220.1 ATMAP2K_ALPHA,ATMEK5,ATMKK5,MAP2K_A,MEK5,MKK5 MAP kinase kinase 5 Cre10.g466750 SAT1 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 7 Serine O-acetyltransferase Serine O-acetyltransferase (EC 2.3.1.30); identical to GenBank AAM23309 (PMID 12481091); involved in cysteine and methionine biosynthesis; Target-P predicts plastid targeting. Differs from the published sequence and from the other isoform in the 5\' UTR, b g11439.t1,SAT1, g11439.t2,SAT1 PF06426 PTHR23416:SF8,PTHR23416 KOG4750 - - GO:0005737,GO:0006535,GO:0009001 AT5G56760.1 ATSERAT1;1,SAT-52,SAT5,SERAT1;1 serine acetyltransferase 1;1 Cre01.g030950 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 11 - - g700.t1 PF08617 PTHR15840:SF9,PTHR15840 KOG4066 - - - AT4G34412.1 - - Cre17.g697334 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - - - - g16911.t1,Cre17.g697334.t1.1 - - - - - - - - - Cre03.g159750 VPS36 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 Subunit of ESCRT-II complex Expressed Protein. Similar to VPS36, a UBA and VPS36-domain protein, component of ESCRT-II complex, involved in ubiquitin-mediated internalization into multi-vesicular bodies (late endosomes). g3271.t1,Cre03.g159750.t1.1,VPS36 PF11605,PF04157,PF00627 PTHR13128:SF5,PTHR13128 - - K12190 GO:0005515 AT5G04920.1 - EAP30/Vps36 family protein Cre09.g416650 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g10312.t1,Cre09.g416650.t1.1 PF03407 - - - - - AT2G35610.1 XEG113 xyloglucanase 113 Cre16.g676200 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 11 - - g16593.t2, g16593.t1 PF02841,PF02263 PTHR10751,PTHR10751:SF2 - - - GO:0003924,GO:0005525 AT5G46070.1 - Guanylate-binding family protein Cre06.g303500 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g7028.t1,Cre06.g303500.t1.1 PF01585 PTHR15818,PTHR15818:SF2 KOG4315 - K13101 GO:0003676,GO:0005622 AT1G33520.1 MOS2 D111/G-patch domain-containing protein Cre07.g313550 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 4 - - g7257.t1 PF07819 - - - - GO:0006505,GO:0006886,GO:0016788,GO:0031227 AT5G17670.1 - alpha/beta-Hydrolases superfamily protein Cre03.g195450 POC11 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 Centriole proteome protein Found in basal body proteome [PMID: 15964273]. g4050.t1,POC11 - - - - - - - - - Cre14.g611300 COP3 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n downregulated 15 Chlamoypsin, light-gated proton channel rhodopsin [PMID: 12060707; PMID: 12089443] g14735.t1,COP3 PF01036 - - - - GO:0005216,GO:0006811,GO:0016020 - - - Cre04.g215050 CHYB,CHYB1,CBH1 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 5 Beta-carotene hydroxylase, putative chloroplast precursor Beta-carotene hydroxylase (carotene beta-hydroxylase), putative chloroplast precursor (CBH) [PMID:15849308]. Previously annotated as CHYB g4670.t1,Cre04.g215050.t1.1,CBH1,CHYB,CHYB1 PF04116 - - 1.14.13.- K02294 GO:0005506,GO:0006633,GO:0016491,GO:0055114 AT4G25700.1 B1,BCH1,BETA-OHASE 1,chy1 beta-hydroxylase 1 Cre13.g589167 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 15 - - g14454.t1,Cre13.g589167.t1.1 - - - - - - - - - Cre07.g357250 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 13 - - g8307.t1 - - - - - - - - - Cre10.g428550 DTS1 - 0 1 1.0 nan 0 1 1.0 nan M n upregulated 3 - - g10583.t1,Cre10.g428550.t1.1,DTS1 PF00809,PF01288 PTHR20941:SF1,PTHR20941 - 2.5.1.15,2.7.6.3 K13941 GO:0042558,GO:0003848,GO:0009396 AT1G69190.1 - Dihydropterin pyrophosphokinase / Dihydropteroate synthase Cre10.g427600 KAT1 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Katanin catalytic subunit, 60 kDa Microtubule-severing protein katanin, p60 (catalytic) subunit. Genbank accession AF205377; PMID: 10401578 g10562.t1,Cre10.g427600.t1.1,KAT1 PF09336,PF00004 PTHR23074,PTHR23074:SF19 KOG0738 3.6.4.3 K07767 GO:0005524 AT1G80350.1 AAA1,ATKTN1,BOT1,ERH3,FRA2,FRC2,FTR,KTN1,LUE1 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre02.g081300 - 0 1 1.0 nan 0 1 1.0 nan M n downregulated 16 - - g1488.t1 PF00293 PTHR12992 - - - GO:0016787 AT1G28960.2 ATNUDT15,ATNUDX15,NUDX15 nudix hydrolase homolog 15 Cre06.g310350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n upregulated 2 - - g7181.t1,Cre06.g310350.t1.1 - - - - - - - - - Cre02.g073650 PRP19 - 0 1 1.0 nan 0 1 1.0 nan O n - 8 Spliceosome Component, nuclear pre-mRNA splicing factor Homologue of S. cerevisiae Prp19, which is required prior to Catalytic Step 1 of nuclear pre-mRNA splicing. Contains WD-40 repeats. Transducin family protein / WD-40 repeat family protein g1304.t1,Cre02.g073650.t1.1,PRP19, g1304.t2,PRP19 PF00400,PF11789,PF08606 PTHR13889,PTHR13889:SF11 KOG0289 6.3.2.19 K10599 - AT2G33340.1 MAC3B MOS4-associated complex 3B Cre16.g657700 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 15 - - g15892.t1 - - - - - - - - - Cre11.g477625 CHLH2,MCH2 - 1 32 1.0 1.0 1 32 1.0 1.0 C n - 5 - - g11858.t1,CHLH2,MCH2 PF11965,PF02514 PTHR23304:SF77,PTHR23304 - - - GO:0016851,GO:0009058 AT5G13630.1 ABAR,CCH,CCH1,CHLH,GUN5 magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) Cre03.g158400 FAP218 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 14 Flagellar Associated Protein Flagellar Associated Protein, found in the flagellar proteome [PMID: 15998802] g3242.t1,Cre03.g158400.t1.1 - PTHR13982,PTHR13982:SF5 - - - - - - - Cre03.g153450 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 17 - - g3126.t1,Cre03.g153450.t1.1 - - - - - - - - - Cre08.g382700 UBQ3 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 10 Bi-ubiquitin Post-translationally modifies proteins to tag them for proteasome-mediated degradation, internalization etc..; contains two ubiquitin domains in tandem. Discussed by Wang et al. 2008 [PMID: 18493050] as ubiquitin, XP_001702404 g9010.t1,UBQ3 PF00240 PTHR10666 KOG0001 - - GO:0005515 AT1G55060.1 UBQ12 ubiquitin 12 Cre12.g502179 - 0 5 1.0 1.0 0 5 1.0 1.0 M n - 16 - - g12529.t1 - - - - - - - - - Cre06.g296924 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g6868.t1 - - - - - - - - - Cre01.g051625 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g1145.t1,Cre01.g051600.t1.3 - - - - - - - - - Cre03.g203650 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g4244.t1,Cre03.g203650.t1.1 - - - - - - - - - Cre13.g605000 - 0 6 1.0 1.0 0 6 1.0 1.0 M n - 17 - - g14593.t1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G03730.1 AtCTR1,CTR1,SIS1 Protein kinase superfamily protein Cre05.g242550 RSP6 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Radial spoke protein 6 Flagellar radial spoke protein 6; gene originally termed PF26 [PMID: 16507594; PMID: 7204490; PMID: 1508197; GI:401051] g5300.t1,Cre05.g242550.t1.1 PF04712 PTHR13159 - - - - - - - Cre06.g305900 UAA4,CPLD22 - 0 2 1.0 1.0 0 2 1.0 1.0 O Y - 9 Sugar nucleotide transporter, UAA transporter family UAA transporter, with a specificity for UDP-N-acetylglucosamine Conserved expressed membrane protein, related to putative sugar nucleotide transporters g7080.t1,UAA4 PF08449 PTHR11132 KOG1444 - - GO:0055085 AT5G19980.1 GONST4 golgi nucleotide sugar transporter 4 Cre06.g257900 - 0 1 1.0 nan 0 1 1.0 nan SP n - 8 - - g5797.t1 PF07915 PTHR15414 - - K10088 - AT5G35080.1 - - Cre12.g485300 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g12043.t1 - - - - - - - - - Cre02.g143600 FEE1 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 10 - - g2611.t1,FEE1 PF03399 PTHR12436:SF3,PTHR12436 - - - - AT3G06290.1 - SAC3/GANP/Nin1/mts3/eIF-3 p25 family Cre03.g197350 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g4087.t1,Cre03.g197350.t1.1 PF00249,PF11831 PTHR10641,PTHR10641:SF17 KOG0050 - K12860 - AT1G09770.1 ATCDC5,ATMYBCDC5,CDC5 cell division cycle 5 Cre17.g715600 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - 11 - - g17323.t1 PF11822 PTHR20946 - - - - - - - Cre05.g231050 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 18 - - g5144.t1 PF00097 - KOG3228 - - - AT4G25230.1 RIN2 RPM1 interacting protein 2 Cre17.g735375 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g17790.t1,Cre17.g735375.t1.1 - PTHR15377:SF2,PTHR15377 - - - - - - - Cre02.g082350 CUT1,CUTA1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - - Copper-binding protein CutA Related to copper binding protein CutA found in chloroplasts of Arabidopsis and ubiquitously distributed in other organisms. Previously annotated as CUTA1 g1509.t2,CUT1, g1509.t1,CUT1 PF03091 PTHR23419 KOG3338 - K03926 GO:0010038 AT2G33740.2 CUTA Nitrogen regulatory PII-like, alpha/beta Cre17.g732500 - 0 8 1.0 1.0 0 8 1.0 1.0 O n downregulated 15 - - g17701.t1 - - KOG4462 - - - - - - Cre08.g372400 UBC19 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - - - g8722.t1,Cre08.g372400.t1.1,UBC19 PF00179 PTHR24067:SF14,PTHR24067 KOG0894 6.3.2.19 K04554 GO:0016881 AT5G50430.1 UBC33 ubiquitin-conjugating enzyme 33 Cre07.g353837 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g8231.t1,Cre07.g353837.t1.1 - - - - - - - - - Cre07.g348450 - 0 13 1.0 1.0 0 13 1.0 1.0 C n - 16 - - g8107.t1 PF00069 PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G31500.1 CPK24 calcium-dependent protein kinase 24 Cre14.g615350 THB2 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Truncated hemoglobin Truncated hemoglobin, plastid-located. Orthologous to C. eugametos LI637 and LI410 [PMID: 8177215, PMID: 10563822]; Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, other eubacteria and unicellular eukaryo g14825.t1,Cre14.g615350.t1.1,THB2 PF01152 PTHR10681,PTHR10681:SF47 - - - GO:0015671,GO:0019825 - - - Cre05.g238200 - 0 1 1.0 nan 0 1 1.0 nan C n - 12 - - g5483.t1,Cre05.g238200.t1.1 - - - - - - - - - Cre09.g394991 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 12 - - g9797.t1,Cre02.g131400.t1.1 - - - - - - - - - Cre03.g200800 CYG61 - 0 14 1.0 1.0 0 14 1.0 1.0 SP n - - - - g4309.t1 PF00211 PTHR11920:SF118,PTHR11920 KOG4462 - - GO:0009190,GO:0016849,GO:0035556 - - - Cre12.g531250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 10 - - g13075.t1 PF01494 PTHR13789,PTHR13789:SF62 - - - GO:0004497,GO:0055114 AT5G67030.1 ABA1,ATABA1,ATZEP,IBS3,LOS6,NPQ2,ZEP zeaxanthin epoxidase (ZEP) (ABA1) Cre10.g419150 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 11 - - g10376.t1 - - - - - - - - - Cre07.g326350 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g7589.t1 PF00400 PTHR13211 KOG2919 - - - AT4G21520.1 - Transducin/WD40 repeat-like superfamily protein Cre04.g212250 - 0 3 1.0 1.0 0 3 1.0 1.0 SP n - 16 - - g4734.t1 PF01733 - - - - GO:0005337,GO:0006810,GO:0016020 - - - Cre04.g221900 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 - - g4843.t1 PF00651 - - - - GO:0005515 - - - Cre13.g603450 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 15 - - g14550.t1,Cre13.g603450.t1.1 - - - - - - AT4G01150.1 - - Cre08.g380700 - 0 1 1.0 nan 0 1 1.0 nan SP n - 13 - - g8959.t1,Cre08.g380700.t1.1 - - - - - - - - - Cre04.g229650 ADH10 - 0 5 1.0 1.0 0 5 1.0 1.0 C n - 14 - - g5030.t1,ADH10, g5030.t5,ADH10, g5030.t4,ADH10, g5030.t3,ADH10, g5030.t6,ADH10, g5030.t2,ADH10 PF00107,PF08240 PTHR11695,PTHR11695:SF237 KOG1197 - - GO:0008270,GO:0016491,GO:0055114 AT1G49670.1 NQR ARP protein (REF) Cre12.g498700 CPLD13 - 0 1 1.0 nan 0 1 1.0 nan C Y upregulated 5 Predicted protein Conserved expressed protein g12611.t1,Cre12.g498700.t1.1 - - - - - - AT5G40500.1 - - Cre01.g065457 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 17 - - g1271.t1,Cre23.g766450.t1.1,Cre23.g766450.t1.2 - - - - - - - - - Cre04.g216902 DAW1 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - - - - g4514.t1, g4514.t2 PF00400 PTHR26208,PTHR26208:SF62, PTHR22847,PTHR22847:SF50 KOG0295 - - - AT3G49660.1 - Transducin/WD40 repeat-like superfamily protein Cre07.g330550 - 0 1 1.0 nan 0 1 1.0 nan M n - 14 - - g7692.t1,Cre07.g330550.t1.1 - - - - - - - - - Cre02.g087450 - 0 6 1.0 1.0 0 6 1.0 1.0 O n - 8 - - g1624.t1,Cre02.g087450.t1.1 PF02582 PTHR16255 KOG2861 - - - AT1G69380.1 - Protein of unknown function (DUF155) Cre03.g170650 - 0 6 1.0 1.0 0 6 1.0 1.0 O n downregulated 9 - - g3516.t1 - - - - - - - - - Cre03.g196400 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 9 - - g4068.t1 PF10513 - - - K11322 - AT1G79020.1 - Enhancer of polycomb-like transcription factor protein Cre10.g454300 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 9 - - g11153.t1 PF04564 PTHR24420,PTHR24420:SF528 KOG1187 - - GO:0000151,GO:0004842,GO:0016567 AT5G61560.1 - U-box domain-containing protein kinase family protein Cre06.g281526 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - - - - g6548.t1,Cre06.g281526.t1.1 PF07647 - - - - GO:0005515 - - - Cre06.g270600 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g6071.t1 - - KOG3263 - - - - - - Cre05.g239550 - 0 7 1.0 1.0 0 7 1.0 1.0 C n - 17 - - g5525.t1 - - - - - - - - - Cre06.g277050 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g6210.t1 PF05285,PF08158 PTHR12730 KOG2229 - - - AT1G13160.1 - ARM repeat superfamily protein Cre04.g225100 - 0 8 1.0 1.0 0 8 1.0 1.0 O n - 13 - - g4919.t1 - - KOG4462 - - - - - - Cre07.g346050 CHL27A,CRD1 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 6 Copper response defect 1 protein Copper response defect 1 protein, chloroplast precursor; Produced under copper and/or oxygen deficient conditions [GI:7542488; PMID: 11910013; PMID: 10811605; PMID: 11910013; PMID: 14673103]; also named CHL27A; Mg-protoporphyrin IX monomethyl ester (oxida g8051.t2,CHL27A, g8051.t1,Cre07.g346050.t1.1,CHL27A PF02915 - - - - GO:0046872 AT3G56940.1 ACSF,CHL27,CRD1 dicarboxylate diiron protein, putative (Crd1) Cre04.g218100 FAP25 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - - Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g4754.t1,Cre04.g218100.t1.1 PF11539 - - - - - - - - Cre16.g664000 HLM25 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 1 - - g16032.t1,Cre16.g664000.t1.1,HLM25 PF00856 PTHR12197,PTHR12197:SF78 - - - GO:0005515 AT1G26760.1 ATXR1,SDG35 SET domain protein 35 Cre03.g159581 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 5 - - g3267.t1,Cre03.g159581.t1.1, g3267.t2 - - - - - - - - - Cre11.g467539 GOX6 - 0 1 1.0 nan 0 1 1.0 nan SP n - 12 Glyoxal or galactose oxidase The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi, bacteria, animals and plants (both use the same Tyr radical / metal mechanism); the plant homologues are secreted, but the fate g11469.t1,Cre18.g750750.t1.1,Cre18.g750750.t1.2,GOX6 PF09118,PF07250 - - - - - AT1G14430.1 - glyoxal oxidase-related protein Cre16.g687400 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 17 - - g16342.t1 PF00069 PTHR24055:SF90,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT4G19110.2 - Protein kinase superfamily protein Cre16.g687406 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 11 - - g16839.t1,Cre01.g071000.t3.1, g16839.t2,Cre01.g071000.t1.1, g16839.t3,Cre01.g071000.t2.1 - - - - - - - - - Cre07.g327000 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g7604.t1,Cre07.g327000.t1.1 PF08217 - - - - - AT1G16020.2 - Protein of unknown function (DUF1712) Cre09.g416800 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g10315.t1,Cre09.g416800.t1.1 - - - - - - - - - Cre02.g086500 PGM10 - 0 1 1.0 nan 0 1 1.0 nan C n upregulated 2 - - g1605.t1,Cre02.g086500.t1.1,PGM10 PF00300 PTHR23029 KOG4754 - - - AT1G09935.1 - Phosphoglycerate mutase family protein Cre17.g707800 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 18 - - g17147.t1,Cre17.g707800.t1.1 PF00069 PTHR24343,PTHR24343:SF121 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT5G63650.1 SNRK2-5,SNRK2.5,SRK2H SNF1-related protein kinase 2.5 Cre01.g035200 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g794.t1,Cre01.g035200.t1.1 PF01529 PTHR22883 - - - GO:0008270 AT3G56930.1 - DHHC-type zinc finger family protein Cre02.g118550 - 0 1 1.0 nan 0 1 1.0 nan C n downregulated 6 - - g2460.t1,Cre02.g118550.t1.1 - - - - - - - - - Cre09.g388100 - 0 3 1.0 1.0 0 3 1.0 1.0 O n downregulated 11 - - g9541.t1 - - - - - - - - - Cre08.g365550 - 0 1 1.0 nan 0 1 1.0 nan O n - 10 - - g8564.t1 - - - - - - - - - Cre02.g084900 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g1568.t1,Cre02.g084900.t1.1 PF00515 PTHR22904,PTHR22904:SF166 - - - GO:0005515 AT1G56440.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre01.g023773 - 0 1 1.0 nan 0 1 1.0 nan C n - 11 - - g547.t1,Cre01.g023773.t1.1 PF00498 - - - - GO:0005515 - - - Cre12.g542000 - 0 1 1.0 nan 0 1 1.0 nan O n - 7 - - g13732.t1, g13732.t2 PF02580 PTHR10472 KOG3323 3.1.-.- K07560 GO:0005737,GO:0016788,GO:0019478 AT4G18460.1 - D-Tyr-tRNA(Tyr) deacylase family protein Cre08.g379576 - 0 1 1.0 nan 0 1 1.0 nan - n - - - - g8936.t1 - - - - - - - - - Cre07.g325980 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g7581.t1 - - - - - - - - - Cre09.g391901 - 0 10 1.0 1.0 0 10 1.0 1.0 O n - 14 - - g9454.t1,Cre09.g391850.t1.3 - - KOG1142 - - - - - - Cre09.g391900 TRXH,TRXh2,TRX5 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 10 Cytosolic thioredoxin h1 Thioredoxin h1, cytosolic. This protein was previously named Ch1 [PMID: 2040309, PMID: 2191628, PMID: 11538123, PMID: 7632918]. mRNA level regulated by light, circadian clock and heavy metals [PMID: 11898433; PMID: 10436225, PMID: 10398712, PMID: 11538123 g9453.t1,TRX5,TRXH PF00085 PTHR10438 KOG0907 - - GO:0045454,GO:0006662,GO:0009055,GO:0015035 AT1G19730.1 ATH4,ATTRX4 Thioredoxin superfamily protein Cre06.g272600 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g6116.t1,Cre06.g272600.t1.1 PF01429 - - - - GO:0003677,GO:0005634 - - - Cre16.g657550 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 10 - - g15889.t1 PF08553 - KOG2395 - - - AT4G33400.1 - Vacuolar import/degradation, Vid27-related protein Cre11.g480132 - 0 1 1.0 nan 0 1 1.0 nan SP n - - - - g11920.t1 - PTHR13078,PTHR13078:SF14 - - - - - - - Cre17.g733600 - 0 1 1.0 nan 0 1 1.0 nan O n - 11 - - g17729.t1 - - - - - - - - - Cre08.g376400 - 0 3 1.0 1.0 0 3 1.0 1.0 M n - 11 - - g8866.t1 - - - - - - - - - Cre07.g320800 - 0 1 1.0 nan 0 1 1.0 nan M n - 10 - - g7417.t1,Cre07.g320800.t1.1 PF09468 PTHR13383:SF10,PTHR13383 - - K10744 GO:0005634 AT4G20325.1 - - Cre08.g370116 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g8674.t1 - - - - - - - - - Cre16.g686750 PTA3 - 0 9 1.0 1.0 0 9 1.0 1.0 O n - 6 Proton/phosphate symporter Putative phosphate transporter homolog type A-4, similar to yeast Pho84 H+/Pi symporter; clusters with PTA2 and PTA4 on scaffold 14. gi|21218043|dbj|AB074876.1 g16358.t1,Cre16.g686750.t1.1,PTA3 PF00083 PTHR24064:SF16,PTHR24064 KOG0252 - - GO:0016021,GO:0022857,GO:0055085 AT5G43340.1 PHT1;6,PHT6 phosphate transporter 1;6 Cre16.g671000 NDA5 - 0 2 1.0 1.0 0 2 1.0 1.0 M n upregulated 2 Type-II NADH dehydrogenase Putative type 2 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase [PMID: 15710684] g16299.t1,Cre16.g671000.t1.1,NDA5 PF07992,PF00070 PTHR22915,PTHR22915:SF15 KOG2495 - - GO:0016491,GO:0050660,GO:0055114 AT5G08740.1 NDC1 NAD(P)H dehydrogenase C1 Cre14.g624000 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 15 - - g15038.t1 - PTHR23125 - - - - AT4G15475.1 - F-box/RNI-like superfamily protein Cre16.g677920 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 14 - - g16557.t1, g16557.t2,Cre16.g677920.t1.1 - - - - - - - - - Cre07.g329783 - 0 2 1.0 1.0 0 2 1.0 1.0 - n - - - - g7673.t1 - - - - - - - - - Cre01.g042050 - 0 5 1.0 1.0 0 5 1.0 1.0 C n upregulated 6 - - g943.t1,Cre01.g042050.t1.1 PF01641 PTHR10173:SF0,PTHR10173 KOG0856 - - GO:0008113,GO:0055114 AT1G53670.1 ATMSRB1,MSRB1 methionine sulfoxide reductase B 1 Cre17.g716350 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 7 - - g17340.t1,Cre17.g716350.t1.1 PF05686 PTHR12203 - - - - - - - Cre09.g403250 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 4 - - g9197.t1 PF00069 PTHR24349:SF127,PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT2G45490.1 AtAUR3,AUR3 ataurora3 Cre06.g279183 - 0 7 1.0 1.0 0 7 1.0 1.0 O n - 8 - - g6491.t1,Cre06.g279200.t1.3 PF09808 - KOG4462 - - - AT3G53270.1 - Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein Cre08.g364200 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g8528.t1 PF07282 - - - - - - - - Cre08.g363250 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 16 - - g8506.t1 - - - - - - - - - Cre09.g387900 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g9546.t1 - PTHR24420,PTHR24420:SF487 - - - - AT3G51740.1 IMK2 inflorescence meristem receptor-like kinase 2 Cre16.g682923 - 0 1 1.0 nan 0 1 1.0 nan M n - - - - g16799.t1 - - - - - - - - - Cre13.g572550 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g14080.t1 - - - - - - - - - Cre07.g357750 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 - - g8319.t2,Cre07.g357750.t1.1, g8319.t1 PF03348 PTHR10383,PTHR10383:SF2 KOG2592 - - GO:0016020 AT3G24460.1 - Serinc-domain containing serine and sphingolipid biosynthesis protein Cre03.g202897 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g4392.t1,Cre19.g753050.t1.1,Cre19.g753050.t1.2 PF00179 PTHR24067,PTHR24067:SF15 KOG0428 6.3.2.19 K10578 GO:0016881 AT3G17000.1 UBC32 ubiquitin-conjugating enzyme 32 Cre01.g020950 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 1 - - g487.t1,Cre01.g020950.t1.1 PF04939 PTHR17602 KOG1765 - - GO:0005634,GO:0042254 AT2G37990.1 - ribosome biogenesis regulatory protein (RRS1) family protein Cre06.g279450 MUT68 - 0 4 1.0 1.0 0 4 1.0 1.0 C n - - Polyadenylate polymerase beta nucleotidyltransferase Noncanonical polyadenylate polymerase that adds untemplated adenines to the 5\' RNA fragments after siRNA-mediated cleavage and appears to stimulate their exosome-dependent degradation. Discussed by Zimmer et al. 2008 [PMID: 18493045]. The role of MUT68 i g6497.t1,MUT68 - PTHR11439,PTHR11439:SF18 - - - - - - - Cre09.g392840 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g9735.t2, g9735.t1 - - - - - - - - - Cre17.g744847 SEC6 - 0 3 1.0 1.0 0 3 1.0 1.0 O n - 15 Component of the Exocyst Complex Expressed Protein. Similar to SEC6, a component of the exocyst complex involved in secretion/exocytosis. g18013.t1,Cre20.g759900.t1.1,SEC6 PF06046 PTHR21292,PTHR21292:SF1 KOG2286 - - - AT1G71820.1 SEC6 SEC6 Cre09.g405950 - 0 1 1.0 nan 0 1 1.0 nan O n - 14 - - g10065.t1,Cre09.g405950.t1.1 - - - - - - - - - Cre07.g313122 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 6 - - g7246.t1 PF00326 PTHR11731:SF5,PTHR11731 - - - GO:0006508,GO:0008236 AT2G47390.1 - Prolyl oligopeptidase family protein Cre11.g476700 MPA9 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - - - - g11840.t1,Cre11.g476700.t1.1,MPA9 PF00149 PTHR22953 KOG1378 - - GO:0016787 AT3G07130.1 ATPAP15,PAP15 purple acid phosphatase 15 Cre02.g100850 - 0 1 1.0 nan 0 1 1.0 nan O n - 16 - - g2057.t1 PF07690,PF00083 PTHR24064 KOG0255 - - GO:0016021,GO:0055085,GO:0022857 AT3G20660.1 4-Oct,AtOCT4 organic cation/carnitine transporter4 Cre12.g513700 HEL52 - 0 1 1.0 nan 0 1 1.0 nan C n - 10 - - g12681.t1,HEL52 - - - - - - - - - Cre12.g516950 SAS6 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 11 Basal body cartwheel protein Product of BLD12 gene; component of basal body cartwheel that establishes the 9-fold symmetry of the centriole [PMID: 18082404]. Previously annotated as SAS6 g12750.t1,Cre12.g516950.t1.1,SAS6 - PTHR18937,PTHR18937:SF83 KOG1850 - - - - - - Cre02.g076100 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 8 - - g1365.t1 PF01465 - - - - GO:0005515 - - - Cre04.g214351 - 0 1 1.0 nan 0 1 1.0 nan C n - 16 - - g4691.t1,Cre04.g214300.t1.3 - - - - - - - - - Cre04.g214350 POLA1 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 10 DNA polymerase alpha, catalytic subunit Homologous to eukaryotic DNA polymerase alpha, catalytic subunit. Involved in DNA replication; a class B polymerase.. See Burgers et al. (2001) (PMID: 11579108). Previously annotated as POLA1 g4690.t1,POLA1 PF12254,PF08996,PF00136,PF03104 PTHR10322,PTHR10322:SF3 KOG0970 2.7.7.7 K02320 GO:0001882,GO:0003887,GO:0006260,GO:0000166,GO:0003677 AT5G67100.1 ICU2 DNA-directed DNA polymerases Cre06.g295200 CPH1 - 0 1 1.0 nan 0 1 1.0 nan O n - 15 Cryptochrome photoreceptor Most similar to plant cryptochromes; (CRY1) (PMID: 7632915); contains 6-4 photolyase and FAD-binding domains; C-terminal extension shows no similarity to that in other cryptochromes (except Volvox) and is important for stability in the dark and degradatio g6833.t1,Cre06.g295200.t1.1,CPH1 PF03441,PF00875 PTHR11455 KOG0133 - K12118 GO:0003913,GO:0006281 AT4G08920.1 ATCRY1,BLU1,CRY1,HY4,OOP2 cryptochrome 1 Cre01.g052100 PRPL18 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 Plastid ribosomal protein L18 Chloroplast ribosomal protein L18, imported to chloroplast; Chloroplast large ribosomal subunit protein L18 g1155.t1,Cre01.g052100.t1.1 PF00861 PTHR12899 - - K02881 GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT1G48350.1 - Ribosomal L18p/L5e family protein Cre16.g688750 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g16169.t1,Cre16.g688750.t1.1 PF07807,PF07808 PTHR12765 - - K13109 GO:0005634 AT2G26460.1 SMU2 RED family protein Cre08.g380950 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - 17 - - g8964.t1,Cre08.g380950.t1.1 - - - - - - - - - Cre01.g026650 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 14 - - g611.t1,Cre01.g026650.t1.1 PF00994 PTHR23293 - - - GO:0006777 AT5G03430.1 - phosphoadenosine phosphosulfate (PAPS) reductase family protein Cre12.g489450 - 0 8 1.0 1.0 0 8 1.0 1.0 C n - 9 - - g12196.t1 - - - - - - - - - Cre02.g147050 - 0 4 1.0 1.0 0 4 1.0 1.0 M n - 12 - - g2519.t1,Cre02.g147050.t1.1 PF05517 PTHR12932 KOG4070 - - - - - - Cre01.g053850 - 0 3 1.0 1.0 0 3 1.0 1.0 M n upregulated 4 - - g1190.t1,Cre01.g053850.t1.1 PF00400 PTHR22847:SF99,PTHR22847 KOG0315 - - - AT5G52250.1 - Transducin/WD40 repeat-like superfamily protein Cre01.g063997 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g1267.t2,Cre23.g766650.t2.1, g1267.t1,Cre23.g766650.t1.1,Cre23.g766650.t1.2 PF06741 PTHR22968 - - - GO:0004697,GO:0005524,GO:0006468 AT3G14010.1 CID4 CTC-interacting domain 4 Cre09.g412000 - 0 3 1.0 1.0 0 3 1.0 1.0 C n upregulated 10 - - g10201.t1 - PTHR22904:SF72,PTHR22904 - - - - AT5G02590.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre16.g685250 SUB11 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 17 - - g16392.t1,Cre16.g685250.t1.1,SUB11 PF00082 PTHR10795,PTHR10795:SF157 - - - GO:0004252,GO:0006508 AT5G44530.1 - Subtilase family protein Cre13.g585900 LKHA4 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 8 Leukotriene A-4 hydrolase Related to Leukotriene A-4 hydrolase (LTA-4 hydrolase) (Leukotriene A(4 hydrolase) g14379.t1,Cre13.g585900.t1.1,LKHA4 PF09127,PF01433 PTHR11533:SF4,PTHR11533 KOG1047 3.3.2.6 K01254 GO:0008237,GO:0008270,GO:0019370,GO:0006508 AT5G13520.1 - peptidase M1 family protein Cre12.g554600 CGL146 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - 14 - - g13442.t1,Cre12.g554600.t1.1 - PTHR11014:SF1,PTHR11014 - - - - AT4G38225.3 - - Cre10.g453300 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 13 - - g11129.t1 - - - - - - - - - Cre07.g328550 VPS18 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 8 Subunit of the VPS-C complex Expressed Protein, similar to VPS18/dor, a component of the VPS-C complex required for vacuolar targeting; model still needs some work g7642.t1,VPS18 PF05131 PTHR23323,PTHR23323:SF26 KOG2034 - - - AT1G12470.1 - zinc ion binding Cre14.g610631 - 0 1 1.0 nan 0 1 1.0 nan O n - 13 - - g14720.t1,Cre42.g787300.t1.1 PF00651 PTHR26379,PTHR26379:SF178 - - - GO:0005515 AT5G19330.1 ARIA ARM repeat protein interacting with ABF2 Cre01.g008650 CDK1 - 0 11 1.0 1.0 0 11 1.0 1.0 O n - 17 - - g218.t1,CDK1 PF00069,PF07714 PTHR24055,PTHR24055:SF170 KOG0594 - - GO:0004672,GO:0005524,GO:0006468 AT1G66750.1 AT;CDKD;2,CAK4,CAK4AT,CDKD1;2,CDKD;2 CDK-activating kinase 4 Cre17.g729101 - 0 9 1.0 1.0 0 9 1.0 1.0 SP n - - - - g17622.t1 PF12499 - - - - - - - - Cre05.g237890 - 0 1 1.0 nan 0 1 1.0 nan C n - - - - g5474.t1 - - - - - - - - - Cre17.g709250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 8 - - g17180.t1 PF04178 PTHR23137 KOG2887 - - GO:0006810,GO:0016021,GO:0016192 AT5G56020.1 - Got1/Sft2-like vescicle transport protein family Cre12.g546800 - 0 8 1.0 1.0 0 8 1.0 1.0 M n - 14 - - g13618.t1 PF12499 - - - - - - - - Cre13.g582900 - 0 1 1.0 nan 0 1 1.0 nan O n - 1 - - g14311.t1 PF00226 - - - - GO:0031072 - - - Cre03.g148750 CLH1 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - 12 Chlorophyllase I Chlorophyllase I, chloroplast precursor, putative; chlorophyllase protein; pfam07224; orthologous to AtCLH1; coronatine (methyl jasmonate) -induced protein 1 (CORI1) [PMID: 10611389]; chloroplast transit peptide 1-46, borderline probability using ChloroP g3025.t1,Cre03.g148750.t1.1,CLH1 PF07224 - - - - GO:0047746 AT1G19670.1 ATCLH1,ATHCOR1,CLH1,CORI1 chlorophyllase 1 Cre09.g395102 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g9800.t1,Cre02.g131500.t1.1 - - - - - - - - - Cre09.g395100 MKP4 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - 17 Dual-specificity protein phosphatase Dual-specificity protein phosphatase. Previously annotated as MPK4 g9389.t1,Cre09.g395100.t1.1,MKP4 PF00782 PTHR10159:SF129,PTHR10159 KOG1718 3.1.3.16,3.1.3.48 K14165 GO:0006470,GO:0008138 AT3G23610.3 DSPTP1 dual specificity protein phosphatase 1 Cre07.g352450 SDR10 - 0 1 1.0 nan 0 1 1.0 nan C n - 4 - - g8197.t1,Cre07.g352450.t1.1,SDR10 PF00106 PTHR24316 KOG1610 1.1.1.30 K00019 GO:0008152,GO:0016491 AT5G65205.1 - NAD(P)-binding Rossmann-fold superfamily protein Cre12.g500900 - 0 5 1.0 1.0 0 5 1.0 1.0 O n - - - - g12558.t1 PF00628,PF02891 PTHR10782:SF4,PTHR10782 - - - GO:0005515,GO:0008270 AT5G60410.2 ATSIZ1,SIZ1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain Cre16.g676869 - 0 5 1.0 1.0 0 5 1.0 1.0 SP n - 16 - - g16743.t1,Cre01.g066950.t1.1 PF07714 PTHR23257 - - - GO:0004672,GO:0006468 AT2G17700.1 - ACT-like protein tyrosine kinase family protein Cre01.g029150 DAU1,ODA7 - 0 12 1.0 1.0 0 12 1.0 1.0 O n - 11 Outer row dynein assembly protein, predominantly cytoplasmic Outer row dynein assembly protein, ODA7 [PMID: 17194703], predominantly cytoplasmic. Identified by comparative genomics as being present only in organisms having motile (MOT) cilia. Ortholog of human LRRC50, mutations in which can result in primary cil g664.t1,Cre01.g029150.t1.1,ODA7 PF00560 PTHR10588:SF7,PTHR10588 KOG2739 - - GO:0005515 AT5G22320.1 - Leucine-rich repeat (LRR) family protein Cre13.g565700 - 0 1 1.0 nan 0 1 1.0 nan O n - - - - g13923.t1 - - - - - - - - - Cre16.g692300 - 0 2 1.0 1.0 0 2 1.0 1.0 SP n - 9 - - g15632.t1,Cre16.g692300.t1.1 PF00664,PF00005 PTHR24221,PTHR24221:SF122 KOG0058 - - GO:0005524,GO:0006810,GO:0016021,GO:0042626,GO:0055085,GO:0016887 AT1G70610.1 ATTAP1,TAP1 transporter associated with antigen processing protein 1 Cre13.g568750 - 0 3 1.0 1.0 0 3 1.0 1.0 O n upregulated 2 - - g13996.t1 PF02845 PTHR21494 - - - GO:0005515 AT1G27752.1 - Ubiquitin system component Cue protein Cre12.g487050 - 0 1 1.0 nan 0 1 1.0 nan SP n - 14 - - g12249.t1 - - - - - - - - - Cre01.g028400 DDC1 - 0 1 1.0 nan 0 1 1.0 nan M n - 8 Aromatic-aminoacid decarboxylase Could be involved in the formation of tryptamine by decarboxylation of tryptophan; tryptamine is a substrate of strictosidine synthase, a key enzyme in monoterpene indole alkaloid biosynthesis; a strictosidine synthase homologue is found in Chlamydomonas g648.t1,DDC1 PF01753 - - - - GO:0008270 - - - Cre03.g201600 - 0 2 1.0 1.0 0 2 1.0 1.0 O n downregulated 12 - - g4290.t1 - - - - - - - - - Cre07.g339876 - 0 2 1.0 1.0 0 2 1.0 1.0 C n - - - - g7905.t1 - - - - - - - - - Cre04.g215900 - 0 4 1.0 1.0 0 4 1.0 1.0 SP n - 6 - - g4653.t1 PF07699 PTHR22727 - - - - - - - Cre12.g524050 - 0 4 1.0 1.0 0 4 1.0 1.0 O n - 10 - - g12904.t1 - - - - - - - - - Cre11.g467579 - 0 2 1.0 1.0 0 2 1.0 1.0 O n - - - - g11509.t1,Cre18.g749450.t1.1,Cre18.g749450.t1.2 - - - - - - - - - Cre13.g583050 PAO8,TIC55-5 - 0 7 1.0 1.0 0 7 1.0 1.0 C n upregulated 4 Pheophorbide a oxygenase, Rieske iron-sulfur cluster protein Pheophorbide a oxygenase. Previously annotated as TIC55-5 g14314.t1,PAO8,TIC55-5 PF00355 PTHR21266,PTHR21266:SF3 - - - GO:0016491,GO:0051537,GO:0055114 AT4G25650.1 ACD1-LIKE,PTC52,TIC55-IV ACD1-like Cre17.g724700 PAO1,TIC55-3 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 8 Pheophorbide a oxygenase, Rieske iron-sulfur cluster protein Rieske-type 2Fe-2S non-heme iron-binding protein with mononuclear-binding site and conserved CxxC domain at the C-terminus. TargetP prediction is other (0.802). Related to Tic55 (PMID: 9405363) and other non-heme Rieske proteins (PAO, Ptc52, CAO; PMID: 15 g17526.t1,PAO1,TIC55-3 PF08417,PF00355 PTHR21266,PTHR21266:SF3 - 1.14.12.20 K13071 GO:0010277,GO:0055114,GO:0016491,GO:0051537 AT3G44880.1 ACD1,LLS1,PAO Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain Cre09.g401663 - 0 3 1.0 1.0 0 3 1.0 1.0 C n - 1 - - g9997.t1,Cre02.g139450.t1.1,Cre02.g139450.t1.2 PF06102 PTHR21738 KOG3190 - - - AT1G12650.1 - - Cre08.g378300 - 0 1 1.0 nan 0 1 1.0 nan O n downregulated 16 - - g8905.t1 - - - - - - - - - Cre10.g430100 ELG22 - 0 7 1.0 1.0 0 7 1.0 1.0 SP n downregulated 13 Exostosin-like glycosyltransferase Belongs to the family of exostosin-like glycosyltransferases g10622.t1,ELG22 PF03016 PTHR11062,PTHR11062:SF12 KOG1021 - - GO:0016020 AT3G57630.1 - exostosin family protein Cre10.g443750 - 0 1 1.0 nan 0 1 1.0 nan O n - 12 - - g10910.t1,Cre10.g443750.t1.1 - - - - - - - - - Cre07.g355100 ZIP1 - 0 1 1.0 nan 0 1 1.0 nan SP n - - Zinc/iron transporter Related to plant homologs; physically linked to ZRT5; appears as CrZIP5 in PMID: 15710683; PMID: 16766055 g8258.t1,Cre07.g355100.t1.1 PF02535 PTHR11040 - - - GO:0016020,GO:0030001,GO:0046873,GO:0055085 AT2G32270.1 ZIP3 zinc transporter 3 precursor Cre10.g431850 PGM18 - 0 3 1.0 1.0 0 3 1.0 1.0 O Y - 6 - - g10659.t1,Cre10.g431850.t1.1,PGM18 PF00300 PTHR23029 - - - - AT3G52155.1 - Phosphoglycerate mutase family protein Cre02.g079100 XPA1 - 0 1 1.0 nan 0 1 1.0 nan O n - 2 - - g1444.t2,XPA1, g1444.t1,XPA1 - - - - - - - - - Cre13.g607250 - 0 2 1.0 1.0 0 2 1.0 1.0 M n - - - - g14641.t1 - - - - - - - - -