gene_ID mappable_length_noUTR N_insertions expected_insertions FDR gene_name defline description synonyms PFAM Panther KOG KEGG_ec KEGG_Orthology Gene_Ontology_terms best_arabidopsis_TAIR10_hit_name best_arabidopsis_TAIR10_hit_symbol best_arabidopsis_TAIR10_hit_defline Cre17.g727600 26639.0 0 36.4151541903 9.84262711378e-14 - - - g17590.t1 PF06650 PTHR16166,PTHR16166:SF66 - - - GO:0008104 AT5G24740.1 - Protein of unknown function (DUF1162) Cre09.g400553 19069.0 0 26.0670661532 1.73412432547e-09 - Target of rapamycin, growth-regulatory PI3K-like protein kinase Homologue of TOR, a PI3K-like protein kinase with a role in the regulation of protein synthesis and cellular organization. Ataxia telangiectasia mutated (ATR) -related. Characterized by Diaz-Troya et al. 2008 [PMID: 18039939, 18670193] g9966.t1,Cre02.g137900.t1.1,TOR1, g9966.t2,Cre02.g137900.t2.1,TOR1 PF02260,PF02259,PF11865,PF08771,PF00454 PTHR11139,PTHR11139:SF9, PTHR11139:SF9,PTHR11139 KOG0891 - K07203 GO:0005515,GO:0016772,GO:0016773 AT1G50030.1, AT1G50030.2 TOR target of rapamycin Cre09.g408950 15388.0 0 21.0351887338 2.77487082893e-07 - - - g10136.t1 PF11488 PTHR13190,PTHR13190:SF3 - - - - AT3G19190.1 ATATG2,ATG2 autophagy 2 Cre03.g148250 13370.0 0 18.276609915 3.19906363238e-06 CGL58 Conserved expressed zinc-finger protein Conserved expressed protein with significant homology to putative male sterility protein in plants - DNA binding protein g3015.t1 PF00628 PTHR16286:SF4,PTHR16286 - - - GO:0005515 AT1G66170.1 MMD1 RING/FYVE/PHD zinc finger superfamily protein Cre07.g336200 12588.0 0 17.207626448 9.31717559065e-06 - - - g7825.t1 PF00443,PF00917 PTHR24006,PTHR24006:SF110 KOG1863 3.1.2.15 K11838 GO:0004221,GO:0006511,GO:0005515 AT5G06600.1 UBP12 ubiquitin-specific protease 12 Cre04.g213350 11956.0 0 16.3436909606 1.79369294363e-05 - - - g4710.t1 - - - - - - - - - Cre08.g364800 11770.0 0 16.0894314659 2.57894298345e-05 - - - g8542.t1,Cre08.g364800.t1.1 PF02769,PF00586 PTHR10099 KOG1907 6.3.5.3 K01952 GO:0003824 AT1G74260.1 PUR4 purine biosynthesis 4 Cre02.g101400 11537.0 0 15.7709236043 3.71180453328e-05 - Clathrin Heavy Chain Clathrin Heavy Chain, vesicle coat protein; Expressed Protein. Identified by Abe et al. 2004 [PMID: 15459796] as NSG15, a gene expressed during nitrogen-starved gametogenesis. g2069.t1,Cre02.g101400.t1.1,CHC1,NSG15 PF00637,PF09268 PTHR10292,PTHR10292:SF1 KOG0985 - K04646 GO:0005198,GO:0006886,GO:0016192,GO:0030130,GO:0030132 AT3G08530.1 - Clathrin, heavy chain Cre09.g412750 11077.0 0 15.1421098002 5.00292024248e-05 - - - g10218.t1,Cre09.g412750.t1.1 PF00069,PF00514 PTHR22983:SF6,PTHR22983 KOG0598 2.7.11.1 K06228 GO:0004672,GO:0005524,GO:0006468,GO:0005515 AT1G50240.2 FU Protein kinase family protein with ARM repeat domain Cre15.g643191 11302.0 0 15.4496817696 5.3680577934e-05 - - - g15493.t1 - - - - - - - - - Cre12.g542800 10860.0 0 14.845473723 7.01928311184e-05 - - - g13713.t1,Cre12.g542800.t1.1,RPC2 PF04567,PF04566,PF04561,PF04565,PF04563,PF04560,PF00562 PTHR20856:SF8,PTHR20856 KOG0215 2.7.7.6 K03021 GO:0003677,GO:0003899,GO:0006351,GO:0032549 AT5G45140.1 NRPC2 nuclear RNA polymerase C2 Cre06.g300750 11027.0 0 15.0737604736 7.43828695511e-05 - - - g6958.t1 - PTHR10887:SF5,PTHR10887 KOG1806 - K12874 - AT2G38770.1 EMB2765 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre12.g537200 10547.0 0 14.4176069389 9.64963264458e-05 - 2-oxoglutarate dehydrogenase, E1 subunit Probable 2-oxoglutarate dehydrogenase (alpha-ketoglutarate dehydrogenase) E1 subunit (EC 1.2.4.2); mitochondrial location predicted by Target-P g13209.t1,Cre12.g537200.t1.1,OGD1 PF00676,PF02779 PTHR23152 KOG0450 1.2.4.2 K00164 GO:0008152,GO:0016624,GO:0004591,GO:0006096,GO:0030976 AT5G65750.1 - 2-oxoglutarate dehydrogenase, E1 component Cre12.g494100 10762.0 0 14.711509043 0.000102295221144 - - - g12067.t1,SPL19 PF08920 PTHR12097 KOG0213 - K12828 - AT5G64270.1 - splicing factor, putative Cre14.g615950 9974.0 0 13.6343236568 0.000187415691238 - - - g14840.t1 PF00005 PTHR19211,PTHR19211:SF5 KOG0062 - - GO:0005524,GO:0016887 AT3G54540.1 ATGCN4,GCN4 general control non-repressible 4 Cre14.g611450 9532.0 0 13.0301156103 0.000363005916524 PLAP7 Plastid lipid associated protein Conserved expressed protein related to plastid lipid associated protein PAP/fibrillin; Arabidopsis homologue is in plastoglobuli (PMID: 16461379). Previously annotated as PLAP7 g14738.t1,PLP7 PF04755 - - - - GO:0005198,GO:0009507 AT4G22240.1 - Plastid-lipid associated protein PAP / fibrillin family protein Cre13.g578950 9656.0 0 13.1996219401 0.000380431711023 - - - g14222.t1 - - - - - - - - - Cre17.g727950 9254.0 0 12.6500933548 0.000486688192197 - 26S proteasome regulatory subunit 26S proteasome regulatory complex, base subcomplex, non-ATPase regulatory RPN2 (subunit 1) g17597.t1,RPN2 PF01851 PTHR10943,PTHR10943:SF2 KOG2062 - K03032 - AT1G04810.1 - 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit Cre17.g739752 9384.0 0 12.8278016037 0.00051443500325 - - - g17893.t1 PF01434,PF00004 PTHR23076,PTHR23076:SF10 - - - GO:0004222,GO:0005524,GO:0006508 AT4G23940.1 - FtsH extracellular protease family Cre01.g029200 8949.0 0 12.2331624629 0.000663420021985 - Separase, cell cycle protease Separase homolog; Protease that cleaves cohesin proteins to initiate anaphase g665.t1,ESP1 PF03568 PTHR12792 - 3.4.22.49 K02365 GO:0005634,GO:0006508,GO:0008233 AT4G22970.1 AESP,ESP,RSW4 homolog of separase Cre03.g202001 8922.0 0 12.1962538266 0.000663420021985 - - - g4384.t1,Cre19.g752700.t1.1,Cre19.g752700.t1.2 - - - - - - - - - Cre16.g688900 8937.0 0 12.2167586245 0.000663420021985 CYG68 - - g16172.t1 - - - - - - - - - Cre05.g235400 8961.0 0 12.2495663013 0.000663420021985 - - - g5413.t1,Cre05.g235400.t1.1 PF00628,PF00665,PF00078 PTHR10178,PTHR10178:SF14 - - K07497 GO:0005515,GO:0003677,GO:0015074,GO:0003723,GO:0003964,GO:0006278 AT3G01460.1 ATMBD9,MBD9 methyl-CPG-binding domain 9 Cre09.g413050 9074.0 0 12.4040357792 0.000692663273726 - - - g10226.t1,BLZ7 PF00170 - - - - GO:0003700,GO:0006355,GO:0043565,GO:0046983 - - - Cre02.g117900 8331.0 0 11.388364787 0.0012335161328 - DEAD/DEAH box family ATP dependent helicase DEAD/DEAH box family ATP dependent helicase. Putative Mtr4p homolog, also called DOB1: Dead-box family ATP dependent helicase required for mRNA export from the nucleus; co-factor of the exosome complex, required for 3\' end formation of 5.8S rRNA in Sacch g2446.t1,HEL11,MTR4 PF00271,PF08148,PF00270 PTHR11752,PTHR11752:SF2 KOG0948 3.6.4.13 K12598 GO:0003676,GO:0004386,GO:0005524,GO:0016818,GO:0008026 AT1G59760.1 - RNA helicase, ATP-dependent, SK12/DOB1 protein Cre12.g553253 8384.0 0 11.4608150731 0.00123449153605 - - - g13814.t1,Cre27.g775400.t1.1 PF03121 - - - - GO:0003896,GO:0006260 AT5G52800.3 - DNA primases Cre17.g734050 8454.0 0 11.5565041302 0.00125561952104 - - - g17745.t1 - - - - - - - - - Cre01.g031300 8459.0 0 11.5633390629 0.00125561952104 - - - g708.t1,CDPK4 PF00069 PTHR24347,PTHR24347:SF13 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT5G04870.1 ATCPK1,CPK1 calcium dependent protein kinase 1 Cre05.g239250 8036.0 0 10.9851037604 0.00171501875285 - - - g5519.t1,Cre05.g239250.t1.1 PF05964,PF05965 - - - - GO:0003677,GO:0005634 AT1G08620.1 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein Cre02.g091150 8135.0 0 11.1204354269 0.00173429437922 SEC24A COP-II coat subunit Expressed Protein. Component of COP-II vesicle coat complex involved in ER-to-Golgi transport. Part of Sec23/24 sub-complex. g1704.t1 PF00626,PF04810,PF04811,PF08033,PF04815 PTHR13803 KOG1985 - K14007 GO:0006886,GO:0006888,GO:0008270,GO:0030127 AT3G07100.1 ERMO2,SEC24A Sec23/Sec24 protein transport family protein Cre17.g706300 8301.0 0 11.347355191 0.00185983385263 - DNA repair helicase DNA repair helicase. Related to human XPD and yeast Rad3p. g17117.t1,XPD1 PF06777,PF06733 PTHR11472:SF1,PTHR11472 KOG1131 3.6.4.12 K10844 GO:0004003,GO:0005634,GO:0006289,GO:0016818,GO:0003677,GO:0005524 AT1G03190.1 ATXPD,UVH6 RAD3-like DNA-binding helicase protein Cre13.g562450 7758.0 0 10.6050815049 0.0023894159511 - Importin beta, RAN-binding protein 7,8 Importin beta, RAN-binding protein 7. Previously annotated as ITN7 g13842.t1,Cre13.g562450.t1.1,IPB3,ITN7 PF03810 PTHR10997:SF18,PTHR10997 KOG1991 - - GO:0006886,GO:0008565 AT2G31660.1 SAD2,URM9 ARM repeat superfamily protein Cre12.g514950 7874.0 0 10.7636519424 0.00241398462346 CGLD17 DNA helicase DNA helicase. Green-lineage-and-diatoms conserved protein related to Arabidopsis protein with Toprim domain. Previously annotated as CGLD17 g12706.t1,HEL53 - - - - - - AT1G30680.1 - toprim domain-containing protein Cre09.g412450 7877.0 0 10.767752902 0.00241398462346 - - - g10211.t1 PF04825,PF04824 PTHR12585 - - K06670 GO:0005515,GO:0000228 AT5G16270.1 ATRAD21.3,SYN4 sister chromatid cohesion 1 protein 4 Cre04.g225350 7959.0 0 10.8798457975 0.00249357253604 - - - g4925.t1, g4925.t2 PF02213 PTHR14445:SF21,PTHR14445 - - - GO:0005515 AT5G42950.1 - GYF domain-containing protein Cre02.g086650 7979.0 0 10.9071855282 0.00251134410459 - Structural Maintenance of Chromosomes protein Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation. Forms heterodimers with SMC4. ChromoDB CPC3402 g1608.t1,Cre02.g086650.t1.1,SMC2 PF02463,PF06470 PTHR18937,PTHR18937:SF9 KOG0933 - K06674 GO:0005524,GO:0005694,GO:0005515,GO:0051276 AT5G62410.1 ATCAP-E1,ATSMC4,SMC2,TTN3 structural maintenance of chromosomes 2 Cre14.g616750 7542.0 0 10.3098124143 0.00329876637105 PEX5 Peroxisomal targeting signal 1 receptor Peroxisomal targeting signal 1 receptor Pex5; binds the PTS1 targeting signal SKL-COOH between its two TRP domains [PMID: 9789089]; PMID: 19214701 g14858.t1 PF00515 PTHR10130 KOG1125 - K13342 GO:0005515 AT5G56290.1 ATPEX5,PEX5 peroxin 5 Cre16.g696000 7514.0 0 10.2715367914 0.00329876637105 - - - g15548.t1,Cre16.g696000.t1.1 - PTHR11952,PTHR11952:SF2 KOG2388 - - GO:0008152,GO:0016779 AT1G31070.2 GlcNAc1pUT1 N-acetylglucosamine-1-phosphate uridylyltransferase 1 Cre10.g455600 7559.0 0 10.3330511853 0.00329876637105 - Origin recognition complex subunit 1 Homologous to eukaryotic ORC1, DNA replication control protein g11180.t1,ORC1 PF00628,PF01426,PF00004 PTHR10763 KOG1514 - K02603 GO:0005515,GO:0003677,GO:0005524 AT4G14700.1 ATORC1A,ORC1A origin recognition complex 1 Cre01.g055432 7509.0 0 10.2647018587 0.00329876637105 - Protein with mechanosensitive ion channel domain Protein of unknown function with mechanosensitive ion channel (MSC) like domain. Previously annotated as MSCL4 g1230.t1,Cre23.g768200.t1.1 PF00924 - KOG0487 - - GO:0016020,GO:0055085 AT1G58200.1 MSL3 MSCS-like 3 Cre17.g698650 7582.0 0 10.3644918755 0.00329876637105 - Gamma-glutamyl transpeptidase Catalyzes the first step in the degradation of glutathione; located on the external surface of the plasma membrane in other organisms g16945.t1,GTP1 PF01019 PTHR11686 KOG2410 2.3.2.2 K00681 GO:0003840 AT4G39640.1 GGT1 gamma-glutamyl transpeptidase 1 Cre10.g466250 7521.0 0 10.2811056971 0.00329876637105 - - - g11428.t1,Cre10.g466250.t1.1,PRP20 PF00400,PF04192 PTHR13889,PTHR13889:SF2 KOG1539 - K14554 GO:0006364,GO:0032040 AT4G04940.1 - transducin family protein / WD-40 repeat family protein Cre17.g737250 7578.0 0 10.3590239294 0.00329876637105 EFG5 Elongation factor EF-Tu-like protein Like elongation factor 2 (EF-2), EF-Tu; also similar to U5 snRNP-specific protein, 116 kDa g17832.t1,Cre17.g737250.t1.1 PF03144,PF00679,PF03764,PF00009 PTHR23115:SF5,PTHR23115 KOG0468 - K12852 GO:0005525,GO:0003924 AT1G06220.1 CLO,GFA1,MEE5 Ribosomal protein S5/Elongation factor G/III/V family protein Cre12.g521200 7642.0 0 10.4465110673 0.0033623326171 - DNA replication factor C complex subunit 1 Homologous to eukaryotic RFC1 (DNA replication factor C complex subunit 1); accessory protein of DNA polymerase. g12840.t1,Cre12.g521200.t1.1,RFC1 PF00533,PF00004,PF08519 PTHR11107:SF9,PTHR11107 KOG1968 - K10754 GO:0005622,GO:0005524,GO:0003689,GO:0005663,GO:0006260 AT5G22010.1 AtRFC1,RFC1 replication factor C1 Cre08.g370601 7711.0 0 10.5408331379 0.00347073026928 - - - g8684.t1 PF04006 PTHR17039 KOG2600 - K14559 - AT5G66540.1 - - Cre10.g445600 7710.0 0 10.5394661514 0.00347073026928 - - - g10964.t1 PF04950,PF08142 PTHR12858:SF2,PTHR12858 KOG1980 - K14569 GO:0005634,GO:0042254 AT1G06720.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre12.g498150 7741.0 0 10.5818427339 0.00348841022049 - - - g12622.t1,Cre12.g498150.t1.1 PF00400 - - - - - - - - Cre16.g676197 7741.0 0 10.5818427339 0.00348841022049 - 26S proteasome regulatory subunit 26S proteasome regulatory complex, base subcomplex, non-ATPase regulatory RPN1 (subunit 2) (PSD2) (PSMD2) g16737.t1,Cre01.g066650.t1.1,RPN1 PF01851 PTHR10943,PTHR10943:SF1 KOG2005 - K03028 - AT4G28470.1 ATRPN1B,RPN1B 26S proteasome regulatory subunit S2 1B Cre05.g240850 7740.0 0 10.5804757473 0.00348841022049 THIC Hydroxymethylpyrimidine phosphate synthase Hydroxymethylpyrimidine phosphate synthase involved in the regulation of thiamine biosynthesis. Precise catalytic function of this ThiC homolog is not known, though it participates in the formation of 4-amino-5-hydroxymethyl-2-methylpyrimidine from amino g5554.t1,Cre05.g240850.t1.1,THI8 PF01964 - - - K03147 GO:0009228 AT2G29630.1 PY,THIC thiaminC Cre01.g055408 7755.0 0 10.6009805453 0.00351398334886 - - - g1224.t1 PF00501,PF11930 PTHR24095:SF42,PTHR24095 KOG1175 6.2.1.1 K01895 GO:0003824,GO:0008152 AT5G36880.2 ACS acetyl-CoA synthetase Cre05.g233600 7237.0 0 9.89288152241 0.00443974227448 - - - g5101.t1 PF00069 PTHR24056 KOG0659 - - GO:0004672,GO:0005524,GO:0006468 AT1G53050.1 - Protein kinase superfamily protein Cre12.g503150 7206.0 0 9.85050493996 0.00443974227448 - - - g12507.t1 - - - - - - AT1G30680.1 - toprim domain-containing protein Cre02.g141406 7223.0 0 9.87374371098 0.00443974227448 - - - g2708.t1,Cre15.g642250.t1.1,Cre15.g642250.t1.2 PF05970 PTHR10492 KOG0987 - - - - - - Cre01.g051174 7410.0 0 10.1293701922 0.00461400422526 - - - g1133.t1,Cre01.g051150.t1.3,BLZ1 PF07716 - KOG4005 - - GO:0003700,GO:0006355,GO:0043565,GO:0046983 - - - Cre17.g734300 7453.0 0 10.188150613 0.00466430085867 - - - g17754.t1, g17754.t2 PF04548 PTHR10903,PTHR10903:SF23 KOG4090 - - GO:0005525 AT3G16620.1 ATTOC120,TOC120 translocon outer complex protein 120 Cre15.g643600 7024.0 0 9.60171339138 0.00595838520519 SUFB1 Iron-sulfur cluster assembly protein ABC-type system involved in Fe-S cluster assembly, likely localized to plastid. Previously annotated as SUFB g15512.t1,Cre15.g643600.t1.1,SUF2,SUFB PF01458 - - - K07033 GO:0016226 AT4G04770.1 ABC1,ATABC1,ATNAP1,LAF6 ATP binding cassette protein 1 Cre13.g565850 6977.0 0 9.53746502444 0.00595838520519 - Alpha subunit of COP-I complex Expressed Protein. Alpha-COP. Subunit of COP-I complex involved in vesicle trafficking. g13926.t1,COPA1 PF06957,PF00400,PF04053 PTHR19876:SF1,PTHR19876 KOG0292 - K05236 GO:0005198,GO:0005515,GO:0006886,GO:0016192,GO:0030126,GO:0030117 AT1G62020.1 - Coatomer, alpha subunit Cre03.g203750 7029.0 0 9.60854832403 0.00595838520519 - Component of oligomeric golgi complex Hypothetical Conserved Protein. Similar to SEC34/COG3, component of oligomeric golgi complex 3, involved in vesicle tethering and other Golgi functions g4241.t1,Cre03.g203750.t1.1,COG3 PF04136 PTHR13302 KOG2604 - - GO:0005801,GO:0006886,GO:0016020 AT1G73430.1 - sec34-like family protein Cre03.g166600 7005.0 0 9.57574064729 0.00595838520519 - - - g3419.t1 - PTHR13366 - - - - AT4G38120.1 - ARM repeat superfamily protein Cre16.g653800 7059.0 0 9.64955791995 0.00596843616195 OPR101 - - g15809.t1 - - - - - - - - - Cre02.g141050 7054.0 0 9.6427229873 0.00596843616195 - Argonaute-like protein Argonaute-like protein presumably involved in posttranscriptional gene silencing/RNA interference. ChromoDB AGO3401 g2669.t1,AGO1 PF02170,PF02171 PTHR22891 KOG1041 - - GO:0005515 AT1G48410.2 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase Cre03.g144324 7073.0 0 9.66869573138 0.00598474241308 - - - g2880.t1,Cre01.g057050.t1.1 PF00560 PTHR24420:SF519,PTHR24420 - - - GO:0005515 AT1G73080.1 ATPEPR1,PEPR1 PEP1 receptor 1 Cre10.g431100 7117.0 0 9.72884313873 0.0060286492512 - - - g10645.t1 - - - - - - - - - Cre09.g413650 7107.0 0 9.71517327342 0.0060286492512 - - - g10247.t1 PF04437 - - - - - - - - Cre11.g467699 6673.0 0 9.12190111911 0.00798612823354 - SM/Sec1-family protein, SEC1 homolog SM/Sec1-family protein, SEC1 homolog. Expressed Protein. SM (Sec1 family) protein, binds SNAREs at the plasma membrane g11630.t1,SEC1 PF00995 PTHR11679:SF20,PTHR11679 KOG1300 - - GO:0006904,GO:0016192 AT1G12360.1 KEU Sec1/munc18-like (SM) proteins superfamily Cre12.g514450 6686.0 0 9.13967194401 0.00798612823354 - - - g12696.t1,Cre12.g514450.t1.1,SPL20 PF04037,PF04046 PTHR12785 KOG2330 - K12829 GO:0005634,GO:0006397 AT4G21660.1 - proline-rich spliceosome-associated (PSP) family protein Cre09.g386731 6697.0 0 9.15470879585 0.00798612823354 - - - g9113.t1,Cre29.g778000.t1.1,Cre29.g778000.t1.2 PF00076,PF00013 PTHR11208,PTHR11208:SF6 KOG0119 - - GO:0003676,GO:0003723 AT5G51300.1 - splicing factor-related Cre02.g142352 6684.0 0 9.13693797095 0.00798612823354 - - - g2645.t1 PF00587,PF00221 PTHR11476 - 6.1.1.21 K01892 GO:0000166,GO:0004821,GO:0005524,GO:0005737,GO:0006412,GO:0006427,GO:0004812,GO:0006418,GO:0009058,GO:0016841 AT3G02760.1 - Class II aaRS and biotin synthetases superfamily protein Cre06.g306850 6807.0 0 9.30507731422 0.00809854611696 - - - g7108.t1,Cre06.g306850.t1.1,HEL31 PF00271,PF00270 PTHR24031,PTHR24031:SF3 KOG0332 3.6.1.- K01529 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT3G53110.1 LOS4 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre11.g467620 6803.0 0 9.2996093681 0.00809854611696 - - - g11550.t1,Cre18.g747650.t1.1 - - KOG0963 - - - - - - Cre14.g612150 6829.0 0 9.3351510179 0.00814104534645 - Non-canonical poly(A) polymerase family - g14752.t1,MOT18,PAP10 - PTHR12271,PTHR12271:SF13 - - - - AT2G39740.1 - Nucleotidyltransferase family protein Cre16.g686100 6851.0 0 9.36522472157 0.00821456313143 - - - g16373.t1 PF03110 - - - - GO:0003677,GO:0005634 AT1G76580.1 - Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein Cre09.g386400 6866.0 0 9.38572951953 0.00826487628031 FAP124 Ubiquitin-activating enzyme E1 Flagellar Associated Protein, found in the flagellar proteome as FAP124 [PMID: 15998802]; related to ubiquitin-activating enzyme E1 g9102.t1,Cre09.g386400.t1.1,UBA1 PF00899,PF10585,PF02134,PF09358 PTHR10953:SF4,PTHR10953 KOG2012 6.3.2.19 K03178 GO:0003824,GO:0005524,GO:0006464,GO:0008641 AT5G06460.1 ATUBA2,UBA 2 ubiquitin activating enzyme 2 Cre06.g251250 6888.0 0 9.41580322321 0.00833753569303 - - - g5627.t1,HIK PF00512,PF00072,PF02518 PTHR24423:SF425,PTHR24423 - - - GO:0000155,GO:0007165,GO:0016020,GO:0000156,GO:0000160,GO:0006355,GO:0005524 AT5G10720.1 AHK5,CKI2,HK5 histidine kinase 5 Cre10.g456350 6892.0 0 9.42127116933 0.00833921599217 - - - g11197.t1,Cre10.g456350.t1.1,KIN7-2 PF00225,PF11995 PTHR24115:SF322,PTHR24115 - - - GO:0003777,GO:0005524,GO:0007018 AT1G18370.1 ATNACK1,HIK,NACK1 ATP binding microtubule motor family protein Cre09.g401182 6916.0 0 9.45407884607 0.00845741906689 - - - g9984.t1,Cre02.g138800.t1.1 PF00004 PTHR23077,PTHR23077:SF44 KOG0733 - - GO:0005524 AT3G56690.1 CIP111 Cam interacting protein 111 Cre07.g325716 6472.0 0 8.84713682645 0.0104293657641 - DNA ligase, ATP-dependent ATP-dependent DNA ligase g7530.t1,Cre26.g772150.t1.1 PF04679,PF01068,PF04675 PTHR10459 KOG0967 6.5.1.1 K10747 GO:0003910,GO:0006281,GO:0006310,GO:0005524,GO:0003677 AT1G08130.1 ATLIG1,LIG1 DNA ligase 1 Cre01.g001501 6436.0 0 8.79792531135 0.0104293657641 OPR1 - - g33.t1 - - - - - - - - - Cre10.g456500 6473.0 0 8.84850381298 0.0104293657641 - - - g11202.t1 - - KOG4462 - - - - - - Cre06.g300600 6472.0 0 8.84713682645 0.0104293657641 - - - g6955.t1 PF03110 - - - - GO:0003677,GO:0005634 AT1G76580.1 - Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein Cre07.g314900 6404.0 0 8.75418174237 0.0104293657641 - - - g7286.t1,HEL34 PF00271,PF00270 PTHR24031,PTHR24031:SF23 KOG0342 3.6.4.13 K13179 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT3G18600.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre02.g085050 6411.0 0 8.76375064808 0.0104293657641 - - - g1571.t1,Cre02.g085050.t1.1 PF00400,PF00097 PTHR22847:SF121,PTHR22847 KOG0266 - - - AT2G32950.1 ATCOP1,COP1,DET340,EMB168,FUS1 Transducin/WD40 repeat-like superfamily protein Cre04.g227350 6506.0 0 8.89361436849 0.0104811468268 - NOT-complex component Belongs to the CNOT2/3/5 family of transcription regulation complexes. g4974.t1,CCR4 PF04065,PF04153 PTHR23326 KOG2150 - K12580 GO:0005634,GO:0006355,GO:0030528 AT5G18230.2 - transcription regulator NOT2/NOT3/NOT5 family protein Cre09.g399100 6507.0 0 8.89498135502 0.0104811468268 OPR42 - - g9293.t1 - - - - - - - - - Cre09.g394362 6540.0 0 8.94009191054 0.0105313070452 - - - g9780.t1,Cre02.g130550.t1.1 - - - - - - - - - Cre12.g513701 6542.0 0 8.9428258836 0.0105313070452 - - - g12682.t1,Cre12.g513701.t1.1 PF00271,PF08147,PF00270 PTHR24031,PTHR24031:SF17 KOG0337 - - GO:0003676,GO:0004386,GO:0005524,GO:0003723,GO:0005634,GO:0016818,GO:0008026 AT1G77030.1 - hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases Cre06.g251450 6584.0 0 9.00023931789 0.01063506135 NIC7 Quinolinate synthetase A Quinolinate synthetase A. This is the NIC7 locus, mutants of which require nicotinamide for growth [PMID: 8647391; partial gene sequence, AY032929]. Homolog of SufE, a Fe-S metabolism associated protein. Previously annotated as NIC7 g5631.t1 PF02445,PF02657 PTHR12735,PTHR12735:SF3 - 2.5.1.72 K03517 GO:0008987,GO:0009435 AT5G50210.1 OLD5,QS,SUFE3 quinolinate synthase Cre16.g685200 6586.0 0 9.00297329095 0.01063506135 - - - g16393.t1 PF00076 PTHR24012:SF64,PTHR24012 KOG0110 - - GO:0003676 AT4G19610.1 - nucleotide binding;nucleic acid binding;RNA binding Cre03.g146527 6601.0 0 9.02347808891 0.0106845817605 - Glutamic-gamma-semialdehyde dehydrogenase Glutamate-5-semialdehyde (GSA) dehydrogenase (EC 1.2.1.41); glutamate-5-phosphate reductase; lacks glutamate kinase domain typically associated with this enzyme (delta 1-pyrroline-5-carboxylate synthetase) in plants; glutamate kinase is encoded by a separ g2991.t1,Cre01.g061800.t1.1,Cre01.g061800.t1.2,GSD1 PF00171 PTHR11063:SF2,PTHR11063 KOG4165 1.2.1.41,2.7.2.11 K12657 GO:0008152,GO:0016491,GO:0055114 AT3G55610.1 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 Cre13.g570150 6631.0 0 9.06448768483 0.0108264429266 - - - g14026.t1 PF06584 PTHR21689:SF2,PTHR21689 - - - - AT3G21430.2 ALY3,ATALY3 DNA binding Cre06.g309100 6144.0 0 8.39876524439 0.0137056791728 - Chaperonin 60C GroEL/HSP60-homolog, targeted to mitochondria; forms stacks of two homo-oligomeric heptameric rings; Cpn60s require mitochondrial Cpn10s to fold non-native proteins to the native state in an ATP-consuming process; PMID: 16143837 g7152.t1,Cre06.g309100.t1.1,CPN60C PF00118 PTHR11353 KOG0356 - K04077 GO:0005524,GO:0044267 AT3G23990.1 HSP60,HSP60-3B heat shock protein 60 Cre18.g749447 6158.0 0 8.41790305582 0.0137056791728 - Bifunctional aspartate kinase/homoserine dehydrogenase Bifunctional aspartate kinase/homoserine dehydrogenase (AK-HSDH) (EC:2.7.2.4 1.1.1.3), based on similarity to aspartate kinase-homoserine dehydrogenase-like protein (GenBank CAB78973) from Arabidopsis; weak organelle targeting (mitochondria) predicted by g18105.t2,Cre31.g780200.t2.1,AHD1, g18105.t1,Cre31.g780200.t1.1,Cre31.g780200.t1.2,AHD1 PF03447,PF01842,PF00742,PF00696 PTHR21499:SF3,PTHR21499 KOG0455 1.1.1.3,2.7.2.4 K12524 GO:0016491,GO:0050661,GO:0055114,GO:0008152,GO:0016597,GO:0006520,GO:0008652 AT4G19710.2 AK-HSDH,AK-HSDH II aspartate kinase-homoserine dehydrogenase ii Cre16.g671825 6159.0 0 8.41927004235 0.0137056791728 - - - g16697.t1,Cre01.g064900.t1.1 - - KOG2812 - - - AT5G16780.1 DOT2,MDF SART-1 family Cre02.g080100 6142.0 0 8.39603127133 0.0137056791728 - Putative polyadenylation cleavage/specificity factor - g1463.t1,CPS PF00753,PF07521,PF10996 PTHR11203:SF8,PTHR11203 KOG1136 3.1.27.- K13148 GO:0016787 AT2G01730.1 ATCPSF73-II,CPSF73-II,EDA26 cleavage and polyadenylation specificity factor 73 kDa subunit-II Cre17.g733750 6146.0 0 8.40149921745 0.0137056791728 - - - g17732.t1,Cre17.g733750.t1.1 - - - - - - - - - Cre13.g562950 6208.0 0 8.48625238236 0.0137230785885 APC6 Anaphase promoting complex subunit 6 Subunit 6 of Anaphase promoting complex. Cell cycle regulated E3 ubiquitin ligase. Homolog of CDC16. g13853.t1 PF07719 PTHR12558,PTHR12558:SF9 KOG1173 - K03353 - AT1G78770.1 APC6 anaphase promoting complex 6 Cre06.g287600 6188.0 0 8.45891265174 0.0137230785885 - - - g6680.t1 PF00023 - KOG4412 - - GO:0005515 AT2G17390.1 AKR2B ankyrin repeat-containing 2B Cre12.g519180 6203.0 0 8.4794174497 0.0137230785885 - - - g12799.t2,Cre12.g519200.t3.1, g12799.t1,Cre12.g519200.t2.1, g12799.t3,Cre12.g519200.t4.1, g12799.t4,Cre12.g519200.t1.3 PF00889,PF00575,PF00627, PF00575, PF00889,PF00627 PTHR11741 KOG1071 - - GO:0003746,GO:0005622,GO:0006414,GO:0003723,GO:0005515, GO:0003746,GO:0005622,GO:0006414,GO:0003723, GO:0003746,GO:0005622,GO:0006414,GO:0005515 AT4G29060.1 emb2726 elongation factor Ts family protein Cre06.g307850 6222.0 0 8.50539019379 0.0137567185343 - - - g7128.t1,Cre06.g307850.t1.1 - - - - - - - - - Cre06.g306601 6228.0 0 8.51359211297 0.0137579608926 - - - g7102.t1,ANS1 PF00425,PF04715 PTHR11236,PTHR11236:SF9 KOG1223 4.1.3.27 K01657 GO:0009058,GO:0016833 AT5G05730.1 AMT1,ASA1,JDL1,TRP5,WEI2 anthranilate synthase alpha subunit 1 Cre15.g642050 6236.0 0 8.52452800521 0.0137708281094 - - - g15482.t1,Cre15.g642050.t1.1 PF10350 PTHR14387 - - - - AT3G55160.1 - - Cre12.g546700 6355.0 0 8.68719940236 0.014223939129 - - - g13621.t2, g13621.t1 PF00076 PTHR23269 KOG0128 - - GO:0003676 AT4G24270.2 EMB140 EMBRYO DEFECTIVE 140 Cre01.g033350 6375.0 0 8.71453913298 0.0143725329303 - - - g753.t1,Cre01.g033350.t1.1,ALD2 PF00171 PTHR11699:SF25,PTHR11699 KOG2454 - - GO:0008152,GO:0016491,GO:0055114 AT3G66658.2 ALDH22A1 aldehyde dehydrogenase 22A1 Cre16.g647550 5946.0 0 8.12810191132 0.017612291336 - - - g15676.t1,HEL60 - - - - - - AT2G07750.1 - DEA(D/H)-box RNA helicase family protein Cre07.g334200 5857.0 0 8.00644011009 0.017612291336 - - - g7783.t1,Cre07.g334200.t1.1,HEL38 PF00271,PF00270 PTHR24031,PTHR24031:SF46 KOG0341 3.6.4.13 K13116 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT5G51280.1 - DEAD-box protein abstrakt, putative Cre02.g101950 5884.0 0 8.04334874642 0.017612291336 - tRNA (uracil-5)-methyltransferase tRNA (uracil-5)-methyltransferase. Previously annotated as TRM2B g2081.t1,Cre02.g101950.t1.1,TMU2,TRM2B PF05958 PTHR11061,PTHR11061:SF2 - - - GO:0006396,GO:0008173 AT2G28450.1 - zinc finger (CCCH-type) family protein Cre09.g386758 5963.0 0 8.15134068234 0.017612291336 - Acetolactate synthase, large subunit Acetolactate synthase, large subunit (EC 2.2.1.6); (acetohydroxy acid synthase, large subunit); precursor, expected plastidic by homology, and predicted plastidic by Target-P. Previously annotated as ALSL1. Can be mutated to herbicide resistance. Requi g9140.t1,Cre29.g778850.t1.1,Cre29.g778850.t1.2,ALS1 PF02775,PF02776,PF00205 PTHR18968:SF13,PTHR18968 KOG4166 2.2.1.6 K01652 GO:0003824,GO:0030976,GO:0000287 AT3G48560.1 AHAS,ALS,CSR1,IMR1,TZP5 chlorsulfuron/imidazolinone resistant 1 Cre04.g214500 5873.0 0 8.02831189458 0.017612291336 IDH3 Isocitrate dehydrogenase, NADP-dependent NADP specific isocitrate dehydrogenase (EC 1.1.1.42), mitochondrial precursor; similar to mammalian mitochondrial ICDH (e.g., GenBank XP_536192), predicted by Target-P to have an organellar targeting sequence (mitochondrial) g4684.t1 PF00180 PTHR11822 KOG1526 1.1.1.42 K00031 GO:0004450,GO:0006102,GO:0055114 AT1G54340.1 ICDH isocitrate dehydrogenase Cre16.g650700 5838.0 0 7.98046736601 0.017612291336 - - - g15743.t1 - - - - - - - - - Cre17.g711100 5877.0 0 8.03377984071 0.017612291336 - - - g17221.t1 PF00439 PTHR22881,PTHR22881:SF3 - - K11723 GO:0005515 AT1G20670.1 - DNA-binding bromodomain-containing protein Cre11.g467723 5962.0 0 8.14997369581 0.017612291336 - 3-ketoacyl-CoA-synthase 3-ketoacyl-CoA-synthase component of plastidic multimeric fatty acid synthase g11653.t1,Cre22.g765250.t1.1,Cre22.g765250.t1.2,KAS1, g11653.t2,Cre22.g765250.t2.1,KAS1 PF00109,PF02801 PTHR11712:SF52,PTHR11712 KOG1394 - - GO:0003824,GO:0009058 AT5G46290.1 KAS I,KAS1 3-ketoacyl-acyl carrier protein synthase I Cre17.g714229 5970.0 0 8.16090958806 0.017612291336 - - - g17294.t1,Cre17.g714229.t1.1 PF00249 PTHR10641,PTHR10641:SF40 - - K09422 - AT3G18100.1 AtMYB4R1,MYB4R1 myb domain protein 4r1 Cre13.g575950 5830.0 0 7.96953147377 0.017612291336 - - - g14155.t1,Cre13.g575950.t1.1,HIR1 PF00400,PF07569 PTHR13831 KOG1009 - K11293 GO:0005634,GO:0006355,GO:0030528 AT3G44530.2 HIRA homolog of histone chaperone HIRA Cre14.g619133 5947.0 0 8.12946889785 0.017612291336 - - - g14920.t1 PF02910,PF00890 PTHR11632:SF5,PTHR11632 KOG2403 1.3.5.1 K00234 GO:0016491,GO:0055114,GO:0009055 AT5G66760.1 SDH1-1 succinate dehydrogenase 1-1 Cre09.g408900 5941.0 0 8.12126697867 0.017612291336 - - - g10135.t1,Cre09.g408900.t1.1 PF06278 PTHR14324 - - K11490 - AT3G16730.1 - - Cre02.g142607 5970.0 0 8.16090958806 0.017612291336 - - - g2782.t1,Cre15.g645400.t1.1,Cre15.g645400.t1.2 PF02902 PTHR12606 - - - GO:0006508,GO:0008234 AT3G06910.1 ULP1A UB-like protease 1A Cre06.g296250 5952.0 0 8.13630383051 0.017612291336 SYK1 Lysyl-tRNA synthetase Lysyl-tRNA synthetase, may also be an aspartyl-tRNA synthetase g6852.t1,TSK2 PF00152,PF01336 PTHR22594,PTHR22594:SF4 KOG1885 6.1.1.6 K04567 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418,GO:0003676 AT3G13490.1 ATKRS-2,OVA5 Lysyl-tRNA synthetase, class II Cre12.g503300 5823.0 0 7.95996256805 0.017612291336 - - - g12504.t1,Cre12.g503300.t1.1 PF00731,PF02222 PTHR23047:SF1,PTHR23047 KOG2835 4.1.1.21 K11808 GO:0004638,GO:0006189 AT2G37690.1 - phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative Cre13.g583400 5864.0 0 8.01600901581 0.017612291336 OPR57 - - g14324.t1 - - - - - - - - - Cre03.g156350 5838.0 0 7.98046736601 0.017612291336 OPR15 - - g3191.t1,Cre03.g156350.t1.1 - - - - - - - - - Cre16.g695650 5826.0 0 7.96406352764 0.017612291336 - - - g15555.t1 - - - - - - - - - Cre03.g192900 5978.0 0 8.1718454803 0.0176399506425 OPR17 - - g3991.t1 - PTHR11584:SF165,PTHR11584 - - - - - - - Cre07.g325500 5998.0 0 8.19918521092 0.017707693833 - Magnesium chelatase subunit H Magnesium chelatase H subunit, chloroplast precursor; Chlamydomonas mutants with defects in this protein are chl1 and brs-1 and result in a brown phenotype [PMID: 11713666; PMID: 4436384]. Orthologous to the bacterial protein BchH [PMID: 9359397]; binds p g7518.t1,CHLH1,MCH1 PF11965,PF02514 PTHR23304:SF77,PTHR23304 - 6.6.1.1 K03403 GO:0016851,GO:0009058 AT5G13630.1 ABAR,CCH,CCH1,CHLH,GUN5 magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) Cre08.g373583 5996.0 0 8.19645123786 0.017707693833 ALB3.4 - - g8804.t2,Cre08.g373600.t1.3, g8804.t1,Cre08.g373600.t2.1 - PTHR23083 - - - - AT3G44370.1 - Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain Cre07.g341150 6015.0 0 8.22242398194 0.0178109234875 - - - g7969.t1 - - - - - - - - - Cre01.g021251 6036.0 0 8.25113069908 0.0179035407155 ARG7 - - g493.t1,Cre01.g021250.t1.3 PF00206 PTHR11444,PTHR11444:SF3 KOG1316 4.3.2.1 K01755 GO:0004056,GO:0042450 AT5G10920.1 - L-Aspartase-like family protein Cre17.g703300 6064.0 0 8.28940632194 0.0180655813149 - - - g17051.t1 - - - - - - - - - Cre14.g629300 6088.0 0 8.32221399868 0.0182998556275 - - - g15157.t1 PF00443 PTHR24006,PTHR24006:SF250 KOG1865 3.1.2.15 K11855 GO:0004221,GO:0006511 AT5G57990.1 UBP23 ubiquitin-specific protease 23 Cre16.g689535 6096.0 0 8.33314989092 0.0183697698154 - - - g16858.t1 PF00642 - - - - GO:0003676,GO:0008270 AT3G48440.1 - Zinc finger C-x8-C-x5-C-x3-H type family protein Cre16.g653934 6098.0 0 8.33588386398 0.0183697698154 - - - g15812.t1, g15812.t2 - - - - - - - - - Cre16.g688850 5577.0 0 7.62368388151 0.0226979609486 - Hexose/glycerol-3-phosphate transporter Membrane hexose/glycerol-3-phosphate transporter, Major Facilitator Superfamily; similarity to bacterial transporter uphT and to uhpC, with dual transport and sensing role for glucose-6-phosphate; also to a putative glycerol-3-phosphate transporter of Cya g16171.t1,HPT2 PF07690 PTHR11662:SF86,PTHR11662 KOG2533 - K08171 GO:0016021,GO:0055085 AT1G30560.1 - Major facilitator superfamily protein Cre09.g388097 5591.0 0 7.64282169294 0.0226979609486 - Translocon at the outer envelope membrane of chloroplasts, 80 kD Hypothetical Conserved Protein similar to OEP80 (At5g19620) and related proteins from plants and cyanobacteria. Previously annotated as OEP80 g9604.t1,Cre02.g122700.t1.1,Cre02.g122700.t1.2,TOC80 PF08479,PF07244,PF01103 PTHR12815,PTHR12815:SF6 KOG2602 - - GO:0019867 AT5G19620.1 ATOEP80,EMB213,OEP80,TOC75 outer envelope protein of 80 kDa Cre06.g277150 5573.0 0 7.61821593538 0.0226979609486 - - - g6212.t1,Cre06.g277150.t1.1 - - - - - - - - - Cre11.g467633 5603.0 0 7.6592255313 0.022699364859 - - - g11563.t1,Cre18.g747000.t1.1 PF01938,PF04055,PF00919 PTHR11918 KOG2492 - - GO:0003824,GO:0051536,GO:0009451,GO:0051539 AT4G36390.1 - Methylthiotransferase Cre08.g367300 5615.0 0 7.67562936967 0.0227097972345 - - - g8606.t1 PF00439 PTHR22880:SF86,PTHR22880 - - - GO:0005515 AT1G17790.1 - DNA-binding bromodomain-containing protein Cre08.g383650 5631.0 0 7.69750115416 0.0227494954709 - - - g9031.t1,Cre08.g383650.t1.1 PF07575 PTHR13373:SF14,PTHR13373 KOG2271 - - - AT4G32910.1 - - Cre09.g389430 5663.0 0 7.74124472314 0.0228772256456 - - - g9641.t1,Cre02.g124450.t1.1 PF01409 PTHR11538,PTHR11538:SF15 KOG2784 6.1.1.20 K01889 GO:0000049,GO:0004812,GO:0005524,GO:0005737,GO:0043039 AT4G39280.2 - phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative Cre13.g585301 5660.0 0 7.73714376355 0.0228772256456 CPLD55 - - g14367.t1 PF04101,PF06925 PTHR21015,PTHR21015:SF21 - 2.4.1.46 K03715 GO:0005975,GO:0016758,GO:0030246,GO:0030259,GO:0009247 AT4G31780.2 MGD1,MGDA monogalactosyl diacylglycerol synthase 1 Cre01.g013600 5671.0 0 7.75218061539 0.0229016116809 - - - g332.t1 - - - - - - AT4G24680.1 MOS1 modifier of snc1 Cre12.g546050 5722.0 0 7.82189692845 0.0232719734077 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (ispC) (yaeM), chloroplast precursor g13634.t1,Cre12.g546050.t1.1,DXR1 PF08436,PF02670 - - 1.1.1.267 K00099 GO:0008299,GO:0030604,GO:0046872,GO:0055114 AT5G62790.1 DXR,PDE129 1-deoxy-D-xylulose 5-phosphate reductoisomerase Cre10.g418750 5742.0 0 7.84923665907 0.023469173017 - - - g10367.t1 - - - - - - - - - Cre05.g243450 5763.0 0 7.87794337621 0.0236699276484 - Glyoxal or galactose oxidase The substrate of this oxidase is unsure, as the similarity is to both glyoxal oxidases and galactose oxidases, found in fungi (both use the same Tyr radical / metal mechanism); the higher plant homologues are secreted, but the fate of the Chlamydomonas is g5273.t2,GOX1, g5273.t1,GOX1 PF09118,PF07250 - KOG0487 - - - AT1G19900.1 - glyoxal oxidase-related protein Cre04.g214690 5768.0 0 7.88477830886 0.0237029747993 - - - g4679.t1,Cre04.g214690.t1.1 PF06978,PF08170 - - - - GO:0001682,GO:0004526,GO:0006396 AT2G47300.2 - ribonuclease Ps Cre16.g686958 5775.0 0 7.89434721458 0.0237663692469 - - - g16835.t1, g16835.t2 - - - - - - - - - Cre06.g287176 5790.0 0 7.91485201254 0.0238095436261 CPLD67 - - g6671.t1,Cre06.g287176.t1.1 PF01713 - - - - - - - - Cre17.g745797 5790.0 0 7.91485201254 0.0238095436261 - - - g18032.t1,Cre20.g759150.t1.1 - - - - - - - - - Cre17.g725900 5285.0 0 7.22452381455 0.0304209729972 - - - g17554.t1 - - - - - - - - - Cre12.g541700 5284.0 0 7.22315682802 0.0304209729972 OPR54 - - g13740.t1,Cre12.g541700.t1.1 - - - - - - - - - Cre10.g448700 5311.0 0 7.26006546435 0.0304209729972 - - - g11031.t1,Cre10.g448700.t1.1 PF02201 PTHR13844 KOG2570 - K11650 GO:0005515 AT5G14170.1 CHC1 SWIB/MDM2 domain superfamily protein Cre16.g694500 5308.0 0 7.25596450476 0.0304209729972 - DnaJ-like protein - g15581.t2,DNJ37, g15581.t1,DNJ37 PF00226 PTHR24077 KOG1003 - - GO:0031072 AT1G28210.2 ATJ1 DNAJ heat shock family protein Cre10.g440750 5353.0 0 7.31747889864 0.0305607916231 - DNA topoisomerase (type IIA), DNA gyrase subunit B DNA topoisomerase (type IIA), DNA gyrase subunit B. Similar to Arabidopsis thaliana, ATF21E1 g10847.t1,Cre10.g440750.t1.1,TOP3 PF01751,PF00986,PF02518,PF00204 PTHR10169:SF20,PTHR10169 - 5.99.1.3 K02470 GO:0003677,GO:0003918,GO:0005524,GO:0005694,GO:0006265 AT5G04130.1 GYRB2 DNA GYRASE B2 Cre12.g520550 5365.0 0 7.33388273701 0.0306051997694 - Importin beta Importin beta-2 homolog. Similar to transportin, a member of the importin beta superfamily. Previously annotated as TRN1 g12826.t1,Cre12.g520550.t1.1,TRN1 PF03810,PF02985 PTHR10527:SF3,PTHR10527 KOG2023 - - GO:0006886,GO:0008565,GO:0005515 AT2G16950.2 ATTRN1,TRN1 transportin 1 Cre10.g454025 5373.0 0 7.34481862925 0.0306269964684 - - - g11148.t2,Cre10.g454050.t1.3, g11148.t3,Cre10.g454050.t3.1, g11148.t1,Cre10.g454050.t2.1 PF04695 - - - - GO:0005777,GO:0016020 AT5G62810.1 ATPEX14,PED2,PEX14 peroxin 14 Cre14.g623700 5384.0 0 7.35985548109 0.0306820422947 OPR63 - - g15031.t1 - - - - - - - - - Cre07.g353450 5397.0 0 7.37762630599 0.0307681038852 - Acetyl-CoA synthetase/ligase Acetyl-CoA synthetase (EC 6.2.1.1); Acetate-CoA ligase; probable mitochondrial protein based on mass spectrometry identification (QFYTAPTLLR + SLLQLGDAWPR), although organelle targeting predicted as other by Target-P and iPSORT. AMP-dependent g8221.t1,Cre07.g353450.t1.1,ACS3 PF00501,PF11930 PTHR24095:SF42,PTHR24095 KOG1175 - - GO:0003824,GO:0008152 AT5G36880.2 ACS acetyl-CoA synthetase Cre13.g580250 5406.0 0 7.38992918476 0.0307790596665 - - - g14255.t2, g14255.t1 PF03941 - - - - - AT5G55820.1 - - Cre06.g278203 5435.0 0 7.42957179415 0.0310105100633 - - - g6345.t1,Cre13.g598400.t1.1,Cre13.g598400.t1.2 - - KOG3544 - K12617 - AT1G79090.1 - - Cre01.g000050 5433.0 0 7.42683782109 0.0310105100633 - RWP-RK transcription factor Putative RWP-RK domain transcription factor, however the domain is non-canonical (RWPaqk) g4.t1,RWP14 PF02042 - - - - - AT4G35590.1 - RWP-RK domain-containing protein Cre07.g317300 5439.0 0 7.43503974028 0.0310224221995 - Mitogen Activated Protein Kinase Kinase Kinase Kinase, involved in circadian rhythms MAPKKKK1; MAP (Mitogen-Activated Protein) Kinase Kinase Kinase Kinase; MAP4K; (Ste20-like). Matsuo et al.\'s (2008) roc78 (rhythm of chloroplast) circadian rhythm mutant locus maps here g7334.t1,MAPKKKK1,ROC78 PF00069 PTHR24361:SF93,PTHR24361 KOG0201 - - GO:0004672,GO:0005524,GO:0006468 AT1G69220.1 SIK1 Protein kinase superfamily protein Cre02.g143150 5458.0 0 7.46101248436 0.0312426478384 - - - g2622.t1 - - - - - - - - - Cre06.g257050 5468.0 0 7.47468234967 0.0313343301828 - Granule bound starch synthase Putative granule bound starch synthase; GBSS-like protein; catalyses the transfer of a glucosyl moiety of the ADP-glc to the non-reducing end of a pre-existing alpha 1-4 linked chain. This sequence matches strongly the GBSSI sequences from higher plant, g5776.t1,GBS2 PF00534 PTHR12526,PTHR12526:SF198 - - - GO:0009058 AT1G32900.1 - UDP-Glycosyltransferase superfamily protein Cre06.g292650 5478.0 0 7.48835221497 0.0314598766458 - - - g6780.t1,ROC93 PF08711 - - - - GO:0003677,GO:0005634,GO:0006351,GO:0030528 AT3G48060.1 - BAH domain ;TFIIS helical bundle-like domain Cre14.g628950 5489.0 0 7.50338906681 0.0316121879901 - - - g15148.t1 - - - - - - - - - Cre03.g151150 5492.0 0 7.5074900264 0.0316234537688 - - - g3076.t1,Cre03.g151150.t1.1 - - - - - - - - - Cre03.g182500 5511.0 0 7.53346277048 0.0319478177524 - Subunit of the Signal Recognition Particle Expressed Protein. Similar to the SRP72 subunit of the Signal Recognition Particle. Involved in ER protein translocation. g3782.t1,Cre03.g182500.t1.1,SRP72 PF08492 PTHR14094,PTHR14094:SF9 KOG2376 - K03108 GO:0006614,GO:0008312,GO:0048500 AT1G67680.1 - SRP72 RNA-binding domain Cre07.g354500 5526.0 0 7.55396756844 0.0321476529754 - Heat shock transcription factor There are two HSF genes in genome; involved in stress response regulation g8246.t1,HSF2 PF00447 PTHR10015,PTHR10015:SF7 - - - GO:0003700,GO:0005634,GO:0006355,GO:0043565 AT1G32330.1 ATHSFA1D,HSFA1D heat shock transcription factor A1D Cre06.g248850 5075.0 0 6.93745664311 0.0398142084391 - - - g5574.t1 PF00069 PTHR24056,PTHR24056:SF17 KOG0670 2.7.11.1 K08827 GO:0004672,GO:0005524,GO:0006468 AT3G25840.1 - Protein kinase superfamily protein Cre14.g615500 5036.0 0 6.88414416842 0.0398142084391 - - - g14828.t1 PF00814 PTHR11735 KOG2707 3.4.24.57 K01409 GO:0004222,GO:0006508 AT2G45270.1 GCP1 glycoprotease 1 Cre15.g635850 5006.0 0 6.8431345725 0.0398142084391 - Mitochondrial F1F0 ATP synthase, gamma subunit H+-transporting two-sector ATPase, gamma subunit, mitochondria targeted (by homology to ATP3_ARATH, human ATP5C1); part of the F1 sector of the enzyme g15338.t2,Cre15.g635850.t1.1,ATP3, g15338.t1,ATP3 PF00231 PTHR11693:SF4,PTHR11693 KOG1531 3.6.3.14 K02136 GO:0015986,GO:0045261,GO:0046933,GO:0046961 AT2G33040.1 ATP3 gamma subunit of Mt ATP synthase Cre16.g672497 5022.0 0 6.86500635699 0.0398142084391 - - - g16703.t1,Cre01.g065200.t1.1 PF00225 PTHR24115:SF152,PTHR24115 KOG0243 - K10398 GO:0003777,GO:0005524,GO:0007018 AT3G45850.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre04.g213751 5062.0 0 6.91968581822 0.0398142084391 - - - g4704.t1 - - - - - - - - - Cre13.g562650 5057.0 0 6.91285088556 0.0398142084391 - - - g13847.t1 - - - - - - - - - Cre02.g094050 5042.0 0 6.8923460876 0.0398142084391 - - - g1777.t1 PF01663 PTHR23071 - - - GO:0003824 AT5G17250.1 - Alkaline-phosphatase-like family protein Cre02.g142900 5019.0 0 6.8609053974 0.0398142084391 - - - g2628.t1,Cre02.g142900.t1.1 - PTHR12197 - - - - AT1G33400.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre02.g076900 5073.0 0 6.93472267005 0.0398142084391 - cGMP-dependent protein kinase Involved in signal transduction initiated by flagellar agglutination during mating [PMID: 16678098]; found in the flagellar proteome [PMID: 15998802] g1384.t1,CGK2 PF00069,PF00027 PTHR24353:SF84,PTHR24353 KOG0614 2.7.11.11 K04345 GO:0004672,GO:0005524,GO:0006468 AT3G08720.1 ATPK19,ATPK2,ATS6K2,S6K2 serine/threonine protein kinase 2 Cre13.g566300 5054.0 0 6.90874992597 0.0398142084391 - - - g13935.t1,Cre13.g566300.t1.1,RRM12 PF03602 - - - - GO:0008168,GO:0031167 AT3G28460.1 - methyltransferases Cre16.g694204 5060.0 0 6.91695184515 0.0398142084391 - - - g15592.t1,Cre72.g794650.t1.1,Cre72.g794650.t1.2 PF04004 PTHR23146 KOG2428 - - - AT5G61150.2 VIP4 leo1-like family protein Cre01.g052550 5070.0 0 6.93062171046 0.0398142084391 - - - g1164.t1 PF01753 PTHR12298 - - - GO:0008270 AT4G24560.1 UBP16 ubiquitin-specific protease 16 Cre01.g051100 5042.0 0 6.8923460876 0.0398142084391 - - - g1131.t1,Cre01.g051100.t1.1 PF02731 PTHR12096 KOG2441 - K06063 GO:0000398,GO:0005681 AT1G77180.1 SKIP chromatin protein family Cre08.g365450 5128.0 0 7.00990692924 0.0399922598441 - - - g8562.t1,Cre08.g365450.t1.1 - - - - - - - - - Cre07.g331500 5123.0 0 7.00307199659 0.0399922598441 CLPR3 Inactive subunit of chloroplast ClpP complex Clp protease, ClpP complex, non-catalytic subunit 3, chloroplast-targeted [PMID: 16262695] g7713.t1 PF00574 PTHR10381,PTHR10381:SF3 - - - GO:0004252,GO:0006508 AT1G09130.3 - ATP-dependent caseinolytic (Clp) protease/crotonase family protein Cre07.g353500 5136.0 0 7.02084282149 0.0399922598441 CGLD5A Putative AP2 domain transcription factor Putative AP2 domain transcription factor, related to ethylene response element g8222.t1 PF00847 - - - K14517 GO:0003700,GO:0006355 AT5G51190.1 - Integrase-type DNA-binding superfamily protein Cre08.g358400 5129.0 0 7.01127391577 0.0399922598441 - - - g8335.t2, g8335.t1 PF05653 PTHR12570 KOG2922 - - - AT3G26670.1 - Protein of unknown function (DUF803) Cre17.g736950 5120.0 0 6.99897103699 0.0399922598441 - - - g17825.t1, g17825.t2 PF11265 - - - - - AT1G25540.1 PFT1 phytochrome and flowering time regulatory protein (PFT1) Cre06.g281500 5114.0 0 6.99076911781 0.0399922598441 OPR25 - - g6547.t1 - - - - - - - - - Cre02.g141186 5135.0 0 7.01947583495 0.0399922598441 - - - g2693.t1 PF00012 - - - - - AT5G09590.1 HSC70-5,MTHSC70-2 mitochondrial HSO70 2 Cre13.g564250 5134.0 0 7.01810884842 0.0399922598441 - Eukaryotic translation initiation factor 3, subunit A Eukaryotic translation initiation factor 3, subunit A. Also known as eIF3 subunit 10, eIF3-theta, eIF3-p170, and eIF3a. g13883.t1,Cre13.g564250.t1.1,EIF3A PF01399 PTHR14005 KOG2072 - K03254 GO:0005515 AT4G11420.1 ATEIF3A-1,ATTIF3A1,EIF3A,EIF3A-1,TIF3A1 eukaryotic translation initiation factor 3A Cre11.g467550 5112.0 0 6.98803514475 0.0399922598441 - - - g11730.t1,Cre11.g467550.t1.1 PF01979 PTHR11647:SF42,PTHR11647 KOG2902 3.5.2.3 K01465 GO:0016787 AT4G22930.1 DHOASE,PYR4 pyrimidin 4 Cre02.g079550 5148.0 0 7.03724665985 0.0400492723218 DRP2 Dynamin-related GTPase, involved in circadian rhythms Expressed Protein. Similar to the DRP2 (ADL3/ADL6) class of Dynamin GTPases involved in many vesicle trafficking events at the Golgi, Plasma membrane, etc.; is missing GTPase domain from N-terminus, with no VISTA or cDNA support. Matsuo et al.\'s (2008) r g1453.t1,Cre02.g079550.t1.1,ROC110 PF01031,PF02212 PTHR11566:SF64,PTHR11566 - - - GO:0005525,GO:0003924 AT1G59610.1 ADL3,CF1,DL3,DRP2B dynamin-like 3 Cre04.g223200 5149.0 0 7.03861364638 0.0400492723218 - - - g4869.t1 PF00069 PTHR24055:SF158,PTHR24055 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT3G18040.1 MPK9 MAP kinase 9 Cre07.g333950 5148.0 0 7.03724665985 0.0400492723218 - SM/Sec1-family protein Expressed Protein. SM (Sec1-family) protein, binds to SNAREs in the Golgi and Endosomal system g7778.t1,Cre07.g333950.t1.1,VPS45 PF00995 PTHR11679:SF3,PTHR11679 KOG1299 - - GO:0006904,GO:0016192 AT1G77140.1 ATVPS45,VPS45 vacuolar protein sorting 45 Cre09.g389467 5161.0 0 7.05501748475 0.0401065394574 - - - g9642.t1,Cre02.g124500.t1.1 - - - - - - - - - Cre02.g142750 5189.0 0 7.09329310761 0.0405000100503 - - - g2632.t1,Cre02.g142750.t1.1, g2632.t2 - - - - - - - - - Cre08.g363650 5200.0 0 7.10832995945 0.0406867288881 - - - g8517.t1 - - - - - - - - - Cre03.g144747 5207.0 0 7.11789886516 0.0407940556507 - - - g2901.t1,Cre01.g057650.t1.1,Cre01.g057650.t1.2 PF00249 PTHR10641 - - - - AT5G02320.1 ATMYB3R5,MYB3R-5 myb domain protein 3r-5 Cre03.g191700 5220.0 0 7.13566969006 0.0407983886541 - - - g3967.t1 - - - - - - - - - Cre11.g469350 5229.0 0 7.14797256884 0.0407983886541 - - - g11781.t1,TTL12 PF03133 - - - - GO:0004835,GO:0006464 - - - Cre12.g551127 5227.0 0 7.14523859578 0.0407983886541 - - - g13809.t1,Cre27.g775150.t1.1 - - - - - - - - - Cre07.g340350 5226.0 0 7.14387160924 0.0407983886541 - Mitochondrial F1F0 ATP synthase associated 60.6 kDa protein Mitochondrial ATP synthase associated protein 1; ATP synthase associated protein 1 (P60 or MASAP) (CAD29654); unknown evolutionary origin [PMID: 11744727, PMID: 15710684] g7917.t1,ASA1 - - - - - - - - - Cre06.g278149 5220.0 0 7.13566969006 0.0407983886541 - - - g6294.t1,Cre13.g595950.t1.1,Cre13.g595950.t1.2 - - - - - - - - - Cre06.g309750 5250.0 0 7.17667928598 0.0410723610656 - - - g7167.t1,Cre06.g309750.t1.1 PF05018 PTHR12458,PTHR12458:SF2 KOG3213 - - - AT3G12300.1 - - Cre09.g417400 5257.0 0 7.1862481917 0.0411664229799 - - - g10332.t2, g10332.t1 PF05970,PF00628 PTHR23274 KOG0987 - - GO:0005515 AT4G12620.1 ATORC1B,ORC1B,UNE13 origin of replication complex 1B Cre08.g365692 5261.0 0 7.19171613782 0.0411804788845 - - - g8568.t1,SIR4 PF03460,PF01077 PTHR11493:SF2,PTHR11493 - - - GO:0016491,GO:0055114,GO:0020037,GO:0051536 AT5G04590.1 SIR sulfite reductase Cre17.g744147 17501.0 1 23.9236312731 2.86284829228e-07 - - - g17999.t1,Cre20.g760500.t1.1 PF00271,PF02889,PF00270 PTHR11752,PTHR11752:SF7 KOG0951 3.6.4.13 K12854 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G20960.1 emb1507 U5 small nuclear ribonucleoprotein helicase, putative Cre15.g635650 17743.0 1 24.2544420136 3.06436487875e-07 - - - g15333.t2,Cre15.g635650.t1.1, g15333.t1 PF02037 PTHR15683 - - - GO:0003676 AT3G08840.2 - D-alanine--D-alanine ligase family Cre12.g537671 17087.0 1 23.3576988494 5.83292329669e-07 - - - g13222.t1,Cre65.g793250.t1.1,Cre65.g793250.t1.2 PF07496,PF00271,PF00855,PF00385,PF00176 PTHR10799,PTHR10799:SF92 KOG0383 - - GO:0008270,GO:0003676,GO:0004386,GO:0005524,GO:0003677 AT5G44800.1 CHR4,PKR1 chromatin remodeling 4 Cre09.g403182 16438.0 1 22.470524591 1.15004701752e-06 - - - g10039.t1 - PTHR10145 KOG1856 - K11292 - AT1G65440.1 GTB1 global transcription factor group B1 Cre03.g165750 15582.0 1 21.3003841208 3.19906363238e-06 - - - g3401.t1 PF05000,PF04983,PF04997,PF04998,PF00623 PTHR19376:SF15,PTHR19376 KOG0261 2.7.7.6 K03018 GO:0003677,GO:0003899,GO:0006351,GO:0005634,GO:0008270,GO:0032549 AT5G60040.1 NRPC1 nuclear RNA polymerase C1 Cre12.g508250 14372.0 1 19.6463304187 1.80510101585e-05 - - - g12390.t1 PF00443 PTHR22975 KOG1073 - - GO:0004221,GO:0006511 AT3G47890.1 - Ubiquitin carboxyl-terminal hydrolase-related protein Cre08.g372800 13093.0 1 17.897954646 6.47255677589e-05 - - - g8731.t1 PF03178 PTHR10644:SF1,PTHR10644 KOG1898 - K12830 GO:0003676,GO:0005634 AT3G55220.1 - Cleavage and polyadenylation specificity factor (CPSF) A subunit protein Cre17.g739551 13268.0 1 18.1371772888 6.8893288489e-05 - - - g17889.t1,Cre17.g739551.t1.1 - - - - - - - - - Cre04.g221650 12214.0 1 16.6963734855 0.000168471172728 - - - g4837.t1 PF03989,PF00521 PTHR10169:SF4,PTHR10169 - 5.99.1.3 K02469 GO:0003677,GO:0003916,GO:0005524,GO:0005694,GO:0006265,GO:0003918 AT3G10690.1 GYRA DNA GYRASE A Cre04.g220200 12316.0 1 16.8358061116 0.000170138235222 - - - g4803.t3, g4803.t2,Cre04.g220200.t1.1, g4803.t1 PF02254,PF00999 PTHR16254 KOG1003 - - GO:0006813,GO:0006812,GO:0015299,GO:0016021,GO:0055085 AT4G00630.1 ATKEA2,KEA2 K+ efflux antiporter 2 Cre02.g078100 11994.0 1 16.3956364488 0.000227093953427 - Eukaryotic initiation factor, eIF-5B Eukaryotic initiation factor, eIF-5B, similar to human EIF5B. Homolog of prokaryotic IF2. Factors eIF1A (homolog of prokaryotic IF1) and eIF5B interact on the ribosome along with other initiation factors and GTP to position the initiation methionine tRN g1412.t1,EIF5B1,EIF5Ba PF01588,PF03144,PF11987,PF00009 PTHR23115:SF41,PTHR23115 KOG1144 - K03243 GO:0000049,GO:0005525,GO:0003924 AT1G76810.1 - eukaryotic translation initiation factor 2 (eIF-2) family protein Cre10.g452450 12005.0 1 16.4106733006 0.000227093953427 CIM110 110 kDa translocon of chloroplast envelope inner membrane Similar to 110 kDa component of the chloroplast inner membrane translocon (PMID: 15829604). Present in thylakoid-enriched fraction based on mass spectrometric peptide identification [PMID: 17078018] g11113.t1,Cre10.g452450.t1.1,TIC110 - - - - - - AT1G06950.1 ATTIC110,TIC110 translocon at the inner envelope membrane of chloroplasts 110 Cre07.g313500 11879.0 1 16.2384329977 0.000331591266925 - - - g7256.t1,Cre07.g313500.t1.1 - - - - - - AT1G55540.1 emb1011 Nuclear pore complex protein Cre14.g614900 11388.0 1 15.5672426112 0.000411723660491 - - - g14815.t1,TSQ1, g14815.t2,Cre14.g614900.t1.1,TSQ1 PF03950,PF04557,PF00749,PF04558 PTHR10119:SF15,PTHR10119 KOG1148 6.1.1.18 K01886 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418,GO:0016876,GO:0043039,GO:0004819,GO:0006425 AT1G25350.1 OVA9 glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative Cre06.g289950 11435.0 1 15.6314909781 0.000413202876884 - DEAD/DEAH box helicase DEAD/DEAH box helicase. Putative homologue of Arabidopsis Hua Enhancer 2, HEN2, DExH box helicase. Previously annotated as HEN2 g6727.t1,HEL28,HEN2 PF00271,PF08148,PF00270 PTHR11752:SF2,PTHR11752 KOG0948 3.6.4.13 K12598 GO:0003676,GO:0004386,GO:0005524,GO:0016818,GO:0008026 AT2G06990.1 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein Cre14.g628050 11488.0 1 15.7039412643 0.000417814100772 - Component of oligomeric golgi complex Expressed Protein. Similar to COG1, component of oligomeric golgi complex 1, involved in vesicle tethering and other Golgi functions g15130.t1,Cre14.g628050.t1.1,COG1 PF08700 - - - - - AT5G16300.1 - Vps51/Vps67 family (components of vesicular transport) protein Cre17.g742700 10862.0 1 14.8482076961 0.000745889053826 CGLD30 Histone-lysine N-methyltransferase Histone-lysine N-methyltransferase. Green-lineage-and-diatoms conserved protein contains a SET domain with similarity to Arabidopsis thaliana ATXR3, SET2, SDG2 (At4g15180) and Oryza sativa SDG701. Previously annotated as CGLD30. ChromoDB SDG3401. Poss g17961.t2,HLM32, g17961.t1,HLM32 PF00856 PTHR26218:SF46,PTHR26218 KOG3227 - - GO:0005515 AT4G15180.1 ATXR3,SDG2 SET domain protein 2 Cre02.g099200 10845.0 1 14.824968925 0.000745889053826 - - - g2018.t1 PF11935,PF12295 PTHR15245:SF10,PTHR15245 - - K06100 - AT5G01400.1 ESP4 HEAT repeat-containing protein Cre03.g172150 10896.5 1 14.8953687314 0.00074841842247 - - - g3548.t1,Cre03.g172150.t1.1 PF01369 PTHR10663,PTHR10663:SF42 - - - GO:0005086,GO:0005622,GO:0032012 AT3G43300.2 ATMIN7,BEN1 HOPM interactor 7 Cre01.g018200 10586.0 1 14.4709194136 0.00102974047361 - - - g430.t1 - - - - - - AT2G27980.1 - Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain Cre15.g637761 10596.0 1 14.4845892789 0.00102974047361 - - - g15380.t2, g15380.t3,Cre15.g637761.t1.1, g15380.t1 PF00005,PF06472 PTHR11384 KOG0064 - K05676 GO:0005524,GO:0016887,GO:0006810,GO:0016020 AT4G39850.1 ACN2,AtABCD1,CTS,PED3,PXA1 peroxisomal ABC transporter 1 Cre13.g561800 10594.0 1 14.4818553058 0.00102974047361 - - - g13827.t1 PF00168 - - - - GO:0005515 - - - Cre12.g492200 10669.0 1 14.5843792956 0.00104629240088 - - - g12107.t1,Cre12.g492200.t1.1 PF00628 PTHR13793,PTHR13793:SF45 - - - GO:0005515 AT3G19510.1 HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain Cre12.g548000 10732.0 1 14.6704994471 0.00107039799608 - - - g13592.t1,Cre12.g548000.t1.1 PF08146,PF12397 PTHR13457 - - K14550 - AT3G06530.3 - ARM repeat superfamily protein Cre03.g201100 10243.0 1 14.0020430336 0.00137423791477 FHL1 FtsH-like ATPase/metalloprotease FtsH-like ATPase/metalloprotease. Absence of HExxH motif suggests that it is inactive as a protease; not an orthologue of higher plant FtsHi genes (PMID:12185496). Previously annotated as FTSHi1 g4303.t1,Cre03.g201100.t1.1,FHL6,FTSHi1 PF00004 PTHR23076:SF21,PTHR23076 - - - GO:0005524 AT5G64580.1 - AAA-type ATPase family protein Cre01.g009250 10364.0 1 14.1674484038 0.00140422016021 - DNA topoisomerase II DNA topoisomerase II. Similar to DNA topoisomerase II in Arabidopsis, TOP2 or AT3G23890. g233.t1,TOP2 PF02518,PF00204,PF00521 PTHR10169:SF19,PTHR10169 KOG0355 5.99.1.3 K03164 GO:0005524,GO:0003677,GO:0003918,GO:0005694,GO:0006265 AT3G23890.1 ATTOPII,TOPII topoisomerase II Cre07.g349100 9708.0 1 13.2707052397 0.00257065457524 - - - g8120.t1,HEL39 PF00271,PF07717,PF04408 PTHR18934 KOG0923 3.6.4.13 K12813 GO:0003676,GO:0004386,GO:0005524 AT1G32490.1 EMB2733,ESP3 RNA helicase family protein Cre09.g401700 9441.0 1 12.905719836 0.00347820105883 - - - g9230.t1,Cre09.g401700.t1.1 PF00515 PTHR16193 - - - GO:0005515 AT5G17270.1 - Protein prenylyltransferase superfamily protein Cre12.g529600 9593.0 1 13.1135017887 0.00358713889904 - DNA-directed RNA polymerase I subunit 1 - g13039.t1,Cre12.g529600.t1.1,RPA1 PF05000,PF04983,PF04997,PF04998,PF00623 PTHR19376:SF11,PTHR19376 KOG0262 2.7.7.6 K02999 GO:0003677,GO:0003899,GO:0006351,GO:0005634,GO:0008270 AT3G57660.1 NRPA1 nuclear RNA polymerase A1 Cre01.g003050 9200.0 1 12.5762760821 0.00461400422526 SEC8 Component of the Exocyst Complex Hypothetical Conserved Protein. Similar to SEC8, a subunit of the Exocyst. g72.t1,Cre01.g003050.t1.1 PF04048 - - - K06111 GO:0000145,GO:0006904,GO:0015031 AT3G10380.1 ATSEC8,SEC8 subunit of exocyst complex 8 Cre01.g024400 9085.0 1 12.4190726311 0.00461400422526 TRS85 Component of TRAPP complex, TRS85-like Expressed Protein. Similar to TRS85, a component of the TRAPP complex, involved in ER to Golgi vesicle transport. g564.t1 - PTHR12975,PTHR12975:SF6 KOG1938 - - - AT5G16280.1 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre04.g217921 9169.5 1 12.5345829929 0.00461400422526 - Beta subunit of COP-I complex Expressed Protein. Beta-COP. Subunit of COP-I complex involved in vesicle coat formation. g4552.t1,Cre03.g210600.t1.1,Cre03.g210600.t1.2,COPB1 PF01602,PF07718 PTHR10635 KOG1058 - - GO:0006886,GO:0016192,GO:0030117,GO:0005198,GO:0030126 AT4G31480.1 - Coatomer, beta subunit Cre02.g141966 9196.0 1 12.570808136 0.00461400422526 - - - g2740.t3,Cre15.g646650.t2.1, g2740.t4,Cre15.g646650.t3.1, g2740.t1,Cre15.g646650.t4.1, g2740.t2,Cre15.g646650.t1.1 PF00069 PTHR26392,PTHR26392:SF151 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre03.g168650 9132.0 1 12.483320998 0.00461400422526 - - - g3471.t1 PF08621,PF08620 - - - - - - - - Cre07.g334100 9185.0 1 12.5557712841 0.00461400422526 - - - g7781.t1 PF01369 PTHR10663,PTHR10663:SF54 KOG0928 - - GO:0005086,GO:0005622,GO:0032012 AT1G13980.1 EMB30,GN,VAN7 sec7 domain-containing protein Cre12.g490250 9226.0 1 12.6118177319 0.00463528328642 - - - g12180.t1,Cre12.g490250.t1.1 PF12612 PTHR12658 KOG1943 - - - AT3G60740.1 CHO,EMB133,TFC D,TTN1 ARM repeat superfamily protein Cre16.g679900 9269.0 1 12.6705981527 0.00466863201205 - 5\' to 3\' exoribonuclease Putative homologue of yeast 5\'-3\' exoribonucleases Xrn1p(cytoplasmic) and Rat1p (nuclear). g16512.t1,Cre16.g679900.t1.1,XRN3 PF03159 PTHR12341 KOG3544 3.1.13.- K12619 GO:0003676,GO:0004527,GO:0005622 AT1G75660.1 AtXRN3,XRN3 5\'-3\' exoribonuclease 3 Cre07.g352350 9302.0 1 12.7157087082 0.0047248971476 FHL3 - - g8195.t1,Cre07.g352350.t1.1,FHL7 PF01434,PF00004 PTHR23076:SF31,PTHR23076 KOG0731 - - GO:0004222,GO:0005524,GO:0006508 AT1G50250.1 FTSH1 FTSH protease 1 Cre16.g658650 9322.0 1 12.7430484388 0.00475956532549 - Myosin heavy chain, class XI - g15911.t1,MYO1 PF00612,PF00063,PF02736,PF01843 PTHR13140,PTHR13140:SF36 KOG0160 - - GO:0005515,GO:0003774,GO:0005524,GO:0016459 AT1G54560.1 ATXIE,XIE Myosin family protein with Dil domain Cre14.g632950 8835.0 1 12.0773259984 0.00600712396767 - Component of CCR4-NOT transcriptional regulator complex Putative homolog of not1p in yeast, a component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively g15261.t1,Cre14.g632950.t1.1,NOT1 PF04054 PTHR13162 - - K12604 - AT1G02080.1 - transcription regulators Cre01.g017150 8908.0 1 12.1771160151 0.0060286492512 - - - g407.t1 - - - - - - - - - Cre01.g001250 9043.0 1 12.3616591968 0.0062637592206 - - - g28.t1,Cre01.g001250.t1.1 - - - - - - - - - Cre12.g508050 8578.0 1 11.72601046 0.0080482265243 - - - g12395.t1,Cre12.g508050.t1.1 PF01388,PF12047 - KOG3227 - - GO:0003677,GO:0005622 AT1G77850.1 ARF17 auxin response factor 17 Cre12.g508150 8673.0 1 11.8558741804 0.00812681882082 - - - g12393.t1,Cre12.g508150.t1.1,SRH21 PF00271,PF09111,PF00176,PF09110 PTHR10799,PTHR10799:SF73 KOG0385 3.6.4.- K11654 GO:0003676,GO:0004386,GO:0005524,GO:0005634,GO:0006338,GO:0016818,GO:0003677,GO:0016585,GO:0031491,GO:0043044 AT3G06400.3 CHR11 chromatin-remodeling protein 11 Cre12.g497900 8250.0 1 11.277638878 0.0104212745227 - - - g12627.t1 - - - - - - - - - Cre06.g306950 8249.0 1 11.2762718914 0.0104212745227 - Serine/threonine protein kinase Serine/Threonine protein kinase. Previously annotated as STPK15 g7110.t1,STK15,STPK15 PF00069 PTHR24356 KOG0598 2.7.11.1 K12767 GO:0004672,GO:0005524,GO:0006468 AT3G17850.1 - Protein kinase superfamily protein Cre10.g453100 8310.0 1 11.3596580698 0.0104293657641 - - - g11126.t2, g11126.t1,Cre10.g453100.t1.1 PF04791 PTHR21355 KOG2296 - - - AT5G65290.1 - LMBR1-like membrane protein Cre12.g502200 8349.0 1 11.4129705445 0.0104293657641 - - - g12528.t1,Cre12.g502200.t1.1 PF00483,PF02020 PTHR22572:SF31,PTHR22572 KOG1461 - K03240 GO:0009058,GO:0016779,GO:0005488 AT2G34970.1 - Trimeric LpxA-like enzyme Cre16.g654550 8415.0 1 11.5031916555 0.0104811468268 - - - g15824.t1,Cre16.g654550.t1.1 PF02373 PTHR10694:SF13,PTHR10694 - - - - AT3G48430.1 REF6 relative of early flowering 6 Cre03.g190550 8416.0 1 11.5045586421 0.0104811468268 - - - g3945.t1,Cre03.g190550.t1.1 PF08638 PTHR12809,PTHR12809:SF2 - - - GO:0016455,GO:0006357,GO:0016592 AT3G04740.1 ATMED14,MED14,SWP RNA polymerase II transcription mediators Cre09.g416250 8465.0 1 11.5715409821 0.0105944500302 - - - g10302.t1 PF00063 PTHR13140,PTHR13140:SF177 KOG0160 - - GO:0003774,GO:0005524,GO:0016459 AT3G19960.1 ATM1 myosin 1 Cre06.g259600 8511.0 1 11.6344223625 0.0106987846242 - Subunit of GARP complex Expressed Protein. Similar to VPS53, a component of the GARP (Golgi-associated retrograde protein) complex g5836.t1,VPS53 PF04100 PTHR12820 KOG2180 - - - AT1G50500.1 ATVPS53,HIT1,VPS53 Membrane trafficking VPS53 family protein Cre09.g388850 7970.0 1 10.8948826494 0.0135225121443 - P-type ATPase/cation transporter, plasma membrane P-type ATPase/cation transporter, plasma membrane. Related to plant potential calcium-transporting ATPase 9, plasma membrane-type (Ca(2+)-ATPase isoform 9); found in the flagellar proteome [PMID: 15998802]. May be a phospholipid flippase g9522.t1,ACA1 PF00689,PF00702,PF00690,PF00122 PTHR24093:SF168,PTHR24093 KOG0204 - - GO:0006754,GO:0006812,GO:0015662,GO:0016020,GO:0003824,GO:0008152,GO:0000166,GO:0046872 AT4G29900.1 ACA10,ATACA10,CIF1 autoinhibited Ca(2+)-ATPase 10 Cre09.g398030 7988.0 1 10.9194884069 0.0135225121443 - - - g9880.t1,Cre02.g135100.t1.1 PF07744 PTHR14089,PTHR14089:SF13 - - - - AT1G27750.1 - nucleic acid binding Cre17.g733600 7993.0 1 10.9263233396 0.0135225121443 - - - g17729.t1 - - - - - - - - - Cre03.g146567 8035.0 1 10.9837367739 0.0135677253708 - - - g2993.t1 - - - - - - - - - Cre16.g653550 8056.0 1 11.012443491 0.0135839830603 - - - g15804.t1,Cre16.g653550.t1.1 - - - - - - - - - Cre06.g300550 8061.0 1 11.0192784237 0.0135839830603 - - - g6954.t1,Cre06.g300550.t1.1 PF02493 - - - - - AT2G35170.1 - Histone H3 K4-specific methyltransferase SET7/9 family protein Cre15.g639400 8158.5 1 11.1525596104 0.0137230785885 - - - g15419.t2,Cre15.g639400.t1.1, g15419.t1 PF00814,PF02367,PF01230 PTHR11735,PTHR11735:SF6 KOG2707 - - GO:0004222,GO:0006508 AT2G45270.1 GCP1 glycoprotease 1 Cre05.g242650 7735.0 1 10.5736408147 0.0173109721842 - - - g5297.t1 - - - - - - - - - Cre10.g455850 7743.0 1 10.5845767069 0.0173109721842 MCM7 Minichromosome maintenance protein Homology to MCM7 DNA replication protein g11186.t1,Cre10.g455850.t1.1 PF00493 PTHR11630:SF26,PTHR11630 KOG0482 - K02210 GO:0003677,GO:0005524,GO:0005634,GO:0006270,GO:0006260 AT4G02060.1 MCM7,PRL Minichromosome maintenance (MCM2/3/5) family protein Cre17.g696250 7719.0 1 10.5517690302 0.0173109721842 - - - g16889.t2, g16889.t1 PF02854 PTHR23253,PTHR23253:SF20 KOG0401 - K03260 GO:0005515,GO:0016070 AT3G60240.4 CUM2,EIF4G eukaryotic translation initiation factor 4G Cre12.g524100 7718.0 1 10.5504020437 0.0173109721842 - mRNA cap-binding protein Best chlamy 3.0 hit for the possible human CBP80 ortholog: Large subunit of the nuclear mRNA cap-binding protein complex, interacts with Npl3p to carry nuclear poly(A)+ mRNA to cytoplasm also involved in nuclear mRNA degradation and telomere maintenance; g12905.t1,Cre12.g524100.t1.1,ABH1,CBP80 PF09088,PF09090 PTHR12412:SF9,PTHR12412 KOG1104 - K12882 GO:0016070 AT2G13540.1 ABH1,ATCBP80,CBP80,ENS ARM repeat superfamily protein Cre09.g393200 7775.0 1 10.6283202759 0.0173615259571 HSP70C Heat shock protein 70C HSP70C is one of 9 genes encoding HSP70-like proteins in Chlamydomonas; HSP70C is localized to mitochondria; it is inducible by heat shock and light; PMID: 2779571, 16143837 g9425.t1,Cre09.g393200.t1.1 PF00012 PTHR19375,PTHR19375:SF1 KOG0102 - K03283 GO:0005524 AT5G09590.1 HSC70-5,MTHSC70-2 mitochondrial HSO70 2 Cre12.g487600 7887.0 1 10.7814227673 0.017612291336 - Polyadenylation cleavage/specificity factor 100 kDa subunit Involved in maturation of 3\' end of mRNA; contains an RNA-metabolising metallo-beta-lactamase domain g12236.t1,CPS2 PF00753,PF10996 PTHR11203:SF5,PTHR11203 KOG1135 - K14402 GO:0016787 AT5G23880.1 ATCPSF100,CPSF100,EMB1265,ESP5 cleavage and polyadenylation specificity factor 100 Cre12.g543300 7844.0 1 10.7226423465 0.017612291336 - - - g13703.t1 - - - - - - - - - Cre06.g275150 7866.0 1 10.7527160502 0.017612291336 CGL69 Triacylglycerol lipase Conserved protein with lipase motif; def triacylglycerol lipase - cd00519, Lipase_3, Lipase (class 3) g6170.t1,Cre06.g275150.t1.1,TGL11 PF01764 PTHR21493,PTHR21493:SF24 - - - GO:0004806,GO:0006629 AT3G07400.1 - lipase class 3 family protein Cre07.g338000 7876.0 1 10.7663859155 0.017612291336 MCM2 Minichromosome maintenance protein Homologous to MCM2 DNA replication protein g7864.t1,Cre07.g338000.t1.1 PF12619,PF00493 PTHR11630:SF44,PTHR11630 KOG0477 - K02540 GO:0003677,GO:0005524,GO:0005634,GO:0006270,GO:0006260 AT1G44900.1 ATMCM2,MCM2 minichromosome maintenance (MCM2/3/5) family protein Cre11.g467745 7938.0 1 10.8511390804 0.017612291336 - Gamma tubulin interacting protein Putative gamma tubulin ring complex protein 3 SPC97/DGRIP91 g11675.t1,Cre22.g764400.t1.1,GCP3 PF04130 PTHR19302:SF14,PTHR19302 KOG2000 - - GO:0005856,GO:0007020,GO:0000226,GO:0000922,GO:0005815 AT5G06680.1 ATGCP3,ATSPC98,GCP3,SPC98 spindle pole body component 98 Cre10.g421700 7926.0 1 10.834735242 0.017612291336 GPD4 Glycerol-3-phosphate dehydrogenase/dihydroxyacetone-3-phosphate reductase - g10435.t1,Cre10.g421700.t1.1 PF07479,PF00702,PF01210 PTHR11728 KOG2711 1.1.1.8 K00006 GO:0005975,GO:0016614,GO:0055114,GO:0003824,GO:0008152,GO:0004367,GO:0006072,GO:0009331,GO:0005737,GO:0016616,GO:0046168,GO:0051287 AT5G40610.1 - NAD-dependent glycerol-3-phosphate dehydrogenase family protein Cre03.g187950 7388.0 1 10.0992964885 0.0214878396527 - - - g3892.t1,SEE1 - PTHR10887,PTHR10887:SF27 KOG1073 - - - AT2G19120.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre07.g351000 7406.0 1 10.1239022461 0.0214878396527 - WW domain protein - g8168.t1,WWP1 PF00397,PF01846 PTHR11864 KOG0152 - K12821 GO:0005515 AT1G44910.1 ATPRP40A,PRP40A pre-mRNA-processing protein 40A Cre16.g685053 7499.0 1 10.2510319934 0.0217042421604 - - - g16818.t1,Cre01.g070150.t1.1 - - - - - - AT5G16780.1 DOT2,MDF SART-1 family Cre01.g012350 7508.0 1 10.2633348722 0.0217102588134 - - - g307.t1,Cre01.g012350.t1.1 PF04931 PTHR13213 - - - GO:0003677,GO:0003887,GO:0006351 AT5G64420.1 - DNA polymerase V family Cre08.g379100 7542.0 1 10.3098124143 0.0218568394815 - - - g8922.t1, g8922.t2 PF00013 PTHR10288,PTHR10288:SF53, PTHR10288:SF36,PTHR10288 - - - GO:0003723 AT5G04430.1 BTR1,BTR1L,BTR1S binding to TOMV RNA 1L (long form) Cre12.g525500 7584.0 1 10.3672258485 0.0220938775591 - Gamma tubulin interacting protein Gamma tubulin ring complex protein 2; SPC97/DGRIP84 Identified by similarity to other homologs g12932.t1,GCP2 PF04130 PTHR19302,PTHR19302:SF13 KOG2001 - - GO:0000226,GO:0000922,GO:0005815 AT5G17410.1 - Spc97 / Spc98 family of spindle pole body (SBP) component Cre08.g375200 7625.0 1 10.4232722963 0.0224375456929 - - - g8840.t2, g8840.t1,Cre08.g375200.t1.1 PF08356,PF08477,PF08355 PTHR24072,PTHR24072:SF12 KOG1707 - - GO:0005525,GO:0005622,GO:0007264 AT5G27540.1 emb2473,MIRO1 MIRO-related GTP-ase 1 Cre13.g563800 7648.0 1 10.4547129865 0.0226342584934 - Myosin heavy chain - g13872.t1,MYO3 PF00612,PF00063 PTHR13140,PTHR13140:SF36 KOG0160 - - GO:0005515,GO:0003774,GO:0005524,GO:0016459 AT2G20290.1 ATXIG,XIG myosin-like protein XIG Cre04.g219500 7123.0 1 9.73704505791 0.0282801371666 DNJ30 DnaJ-like protein DnaJ-like protein; contains J-domain (pfam00226) g4783.t1 PF00226 PTHR22904 - - - GO:0031072 AT5G12430.1 - Heat shock protein DnaJ with tetratricopeptide repeat Cre07.g341700 7112.0 1 9.72200820608 0.0282801371666 - - - g7954.t1 PF00069 PTHR22974:SF4,PTHR22974 KOG0583 2.7.12.1 K08866 GO:0004672,GO:0005524,GO:0006468 AT1G77720.1 PPK1 putative protein kinase 1 Cre06.g287250 7131.0 1 9.74798095016 0.0282801371666 - Component of oligomeric golgi complex Expressed protein. Similar to COG4/COD1 component of oligomeric golgi complex 4, involved in vesicle tethering and other Golgi functions g6673.t1,Cre06.g287250.t1.1,COG4 PF08318 PTHR24016:SF7,PTHR24016 KOG0412 - - - AT4G01400.1 - - Cre07.g354100 7137.0 1 9.75618286934 0.0282801371666 - - - g8238.t1,Cre07.g354100.t1.1,HAT4 PF04055,PF00583 PTHR11135 KOG2535 2.3.1.48 K07739 GO:0003824,GO:0051536,GO:0008080,GO:0008152 AT5G50320.1 AtELP3,ELO3,ELP3,HAC8,HAG3 radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein Cre13.g604600 7140.0 1 9.76028382893 0.0282801371666 - - - g14585.t1,Cre13.g604600.t1.1 - - - - - - - - - Cre03.g146487 7236.0 1 9.89151453588 0.0286062689947 - Exportin 1 related protein Homolog of XPO1 proteins and CRM1 (yeast). Involved in exporting mRNA, protein and ribosomal subunits to the cytoplasm g2989.t1,Cre01.g061700.t1.1,Cre01.g061700.t1.2,XPO1 PF08389,PF08767,PF03810 PTHR11223,PTHR11223:SF2 KOG2020 - K14290 GO:0006886,GO:0008565 AT5G17020.1 ATCRM1,ATXPO1,HIT2,XPO1,XPO1A exportin 1A Cre17.g708050 7304.0 1 9.98446961996 0.0291179858732 - - - g17155.t1 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT1G67890.1 - PAS domain-containing protein tyrosine kinase family protein Cre16.g690655 7326.0 1 10.0145433236 0.0293253800039 - - - g16868.t1,Cre01.g072250.t1.1 - - KOG0811 - - - - - - Cre01.g042300 7333.0 1 10.0241122294 0.0293663271671 - Scavenger receptor cysteine rich (SRCR) protein Scavenger receptor cysteine-rich protein; contains ligand-binding SRCR domain found in speract/scavenger receptor (PMID: 14995912) g948.t1,SRR6 PF00530 PTHR19331,PTHR19331:SF365 - - - GO:0005044,GO:0016020 - - - Cre01.g055473 7357.0 1 10.0569199061 0.0295937854888 - - - g1240.t1 - - - - - - - - - Cre01.g031900 6899.0 1 9.43084007504 0.0366769512275 - - - g722.t1 PF03109 PTHR10566:SF23,PTHR10566 KOG1236 - K08869 - AT1G11390.1 - Protein kinase superfamily protein Cre09.g398650 6833.0 1 9.34061896402 0.0366769512275 - - - g9304.t1,Cre09.g398650.t1.1 PF10312,PF09732 PTHR21737,PTHR21737:SF4 KOG2370 - - - AT1G03910.1 - - Cre16.g692600 6890.0 1 9.41853719627 0.0366769512275 ULP2 - - g15625.t2,SMT7, g15625.t1,SMT7 PF02902 PTHR12606 KOG3246 3.4.22.- K08592 GO:0006508,GO:0008234 AT4G15880.1 ATESD4,ESD4 Cysteine proteinases superfamily protein Cre16.g693650 6867.0 1 9.38709650606 0.0366769512275 - - - g15605.t1 - - - - - - - - - Cre12.g540076 6945.0 1 9.49372145545 0.0368791400761 - - - g13783.t1,Cre27.g774150.t1.1 PF08644,PF00557,PF08512 PTHR13980,PTHR13980:SF12 KOG1189 - - GO:0009987 AT4G10710.1 SPT16 global transcription factor C Cre15.g634650 6987.0 1 9.55113488974 0.0372298599815 - - - g15303.t1,Cre15.g634650.t1.1 - - - - - - - - - Cre03.g189650 7017.0 1 9.59214448566 0.0374823648253 - - - g3928.t1 PF00569,PF02135,PF08214 PTHR13808 KOG0702 2.3.1.48 K04498 GO:0008270,GO:0003712,GO:0004402,GO:0005634,GO:0006355 AT1G79000.1 ATHAC1,ATHPCAT2,HAC1,PCAT2 histone acetyltransferase of the CBP family 1 Cre03.g144967 7019.0 1 9.59487845872 0.0374823648253 - - - g2912.t1,Cre01.g058150.t1.1,Cre01.g058150.t1.2 PF12037,PF00004 PTHR23075 KOG0742 - - GO:0005524 AT3G03060.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre12.g542700 7014.0 1 9.58804352607 0.0374823648253 - - - g13715.t1,Cre12.g542700.t1.1 - - KOG4593 - - - - - - Cre10.g438700 7028.0 1 9.6071813375 0.0375241647733 - - - g10805.t1 PF00400,PF04003 PTHR19853 KOG0306 - K14556 - AT3G21540.1 - transducin family protein / WD-40 repeat family protein Cre10.g433600 7041.0 1 9.6249521624 0.0376885885246 - - - g10696.t1,Cre10.g433600.t1.1 PF02219 PTHR21091:SF1,PTHR21091 KOG0564 1.5.1.20 K00297 GO:0004489,GO:0006555,GO:0055114 AT2G44160.1 MTHFR2 methylenetetrahydrofolate reductase 2 Cre09.g400550 7062.0 1 9.65365887954 0.0379127945037 - Nitric oxide associated protein NO-associated; carries a GTPase domain, homologue in Arabidopsis appears necessary for synthesis of nitric oxide, but does not carry out the reaction (PMID: 17030145) g9257.t1,Cre09.g400550.t1.1,NOA1 - PTHR11089:SF36,PTHR11089 - 1.14.13.39 K13427 - AT3G47450.1 ATNOA1,ATNOS1,NOA1,NOS1,RIF1 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre14.g632176 7067.0 1 9.6604938122 0.0379569164609 - - - g15234.t1 PF00249 PTHR10641,PTHR10641:SF11 - - - - AT5G41020.1 - myb family transcription factor Cre11.g467536 7077.0 1 9.6741636775 0.0381003979006 - - - g11466.t1,Cre18.g750900.t1.1 PF00069 PTHR24056,PTHR24056:SF120 KOG0583 - - GO:0004672,GO:0005524,GO:0006468 AT1G51660.1 ATMEK4,ATMKK4,MKK4 mitogen-activated protein kinase kinase 4 Cre16.g686286 6628.0 1 9.06038672523 0.0452947350652 - - - g16829.t1,Cre01.g070550.t1.1,Cre01.g070550.t1.2 - - - - - - - - - Cre02.g073250 6608.0 1 9.03304699462 0.0452947350652 - - - g1296.t1 PF07500 PTHR11477 - - - GO:0006351 AT5G25520.2 - SPOC domain / Transcription elongation factor S-II protein Cre03.g201000 6576.0 1 8.98930342564 0.0452947350652 - - - g4305.t1 - - - - - - AT5G61450.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre17.g734400 6618.0 1 9.04671685993 0.0452947350652 - Ubiquitin ligase SCF complex subunit Cullin Ubiquitin ligase SCF complex subunit Cullin. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145]. g17756.t1,CUL3 PF00888,PF10557 PTHR11932:SF21,PTHR11932 KOG2166 - - GO:0006511,GO:0031461,GO:0031625 AT4G02570.1 ATCUL1,AXR6,CUL1 cullin 1 Cre06.g251400 6587.0 1 9.00434027748 0.0452947350652 MME6 NADP-dependent malic enzyme NADP-dependent malic enzyme, probably mitochondrial based on Target-P prediction g5630.t1,Cre06.g251400.t1.1 PF00390,PF03949 PTHR23406:SF2,PTHR23406 KOG1257 1.1.1.40 K00029 GO:0016616,GO:0051287 AT5G25880.1 ATNADP-ME3,NADP-ME3 NADP-malic enzyme 3 Cre09.g390986 6575.0 1 8.98793643911 0.0452947350652 - Aspartyl-tRNA synthetase - g9683.t1,Cre02.g126350.t1.1,Cre02.g126350.t1.2 PF02938,PF00152,PF01336 PTHR22594,PTHR22594:SF5 KOG2411 6.1.1.12 K01876 GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0000166,GO:0006418,GO:0016874,GO:0003676 AT4G33760.1 - tRNA synthetase class II (D, K and N) family protein Cre03.g200200 6621.0 1 9.05081781952 0.0452947350652 - - - g4323.t1 PF00069 PTHR24055,PTHR24055:SF160 KOG0593 - - GO:0004672,GO:0005524,GO:0006468 AT1G53510.1 ATMPK18,MPK18 mitogen-activated protein kinase 18 Cre11.g467553 6555.0 1 8.9605967085 0.0452947350652 - - - g11482.t1 PF03144,PF03764,PF00009 PTHR23115,PTHR23115:SF13 - - - GO:0005525,GO:0003924 AT2G45030.1 - Translation elongation factor EFG/EF2 protein Cre12.g532700 6590.0 1 9.00844123707 0.0452947350652 - - - g13106.t1 - - - - - - AT5G26760.2 - - Cre17.g733100 6653.0 1 9.0945613885 0.0453798168817 - - - g17716.t1 - - KOG2748 - - - AT1G54970.1 ATPRP1,PRP1,RHS7 proline-rich protein 1 Cre16.g685725 6655.0 1 9.09729536156 0.0453798168817 - - - g16824.t2,Cre01.g070450.t1.1, g16824.t1,Cre01.g070450.t2.1 - - - - - - AT5G16780.1 DOT2,MDF SART-1 family Cre13.g584100 6666.0 1 9.1123322134 0.0453798168817 - - - g14339.t1 PF00069 PTHR23257:SF346,PTHR23257 KOG0198 - - GO:0004672,GO:0005524,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre12.g553100 6728.0 1 9.1970853783 0.0460524417458 - - - g13474.t2, g13474.t1 - PTHR15598:SF5,PTHR15598 - - K12616 - AT3G13300.1, AT3G13290.1 VCR, VCS varicose-related, Transducin/WD40 repeat-like superfamily protein Cre13.g564500 6728.0 1 9.1970853783 0.0460524417458 - - - g13888.t1 PF00069 PTHR24349:SF13,PTHR24349 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT1G35670.1 ATCDPK2,ATCPK11,CDPK2,CPK11 calcium-dependent protein kinase 2 Cre10.g430501 6736.0 1 9.20802127055 0.046146276816 - - - g10631.t1,Cre10.g430500.t1.2 PF00515,PF00564 PTHR22904,PTHR22904:SF172 KOG4555 - - GO:0005515 AT1G62390.1 - Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Cre16.g676650 6765.0 1 9.24766387994 0.0465156226169 - Gamma1-Adaptin Expressed protein. Gamma1-Adaptin, clathrin adaptor complex subunit, putative member of AP-1 complex g16582.t1,Cre16.g676650.t1.1,AP1G1 PF01602,PF02883 PTHR22780,PTHR22780:SF5 KOG1062 - K12391 GO:0006886,GO:0016192,GO:0030117,GO:0030131 AT1G60070.1 - Adaptor protein complex AP-1, gamma subunit Cre17.g728950 6814.0 1 9.31464621994 0.0475149743123 - - - g17618.t1,RFD2 PF01872,PF08719 PTHR11079:SF14,PTHR11079 - - - GO:0008703,GO:0009231 AT3G47390.2 PHS1 cytidine/deoxycytidylate deaminase family protein Cre19.g751197 15854.0 2 21.6722044571 2.42114303336e-05 - - - g18143.t2,Cre33.g782159.t2.1, g18143.t1,Cre33.g782159.t1.1,Cre33.g782159.t1.2 PF08161 PTHR21576,PTHR21576:SF2 KOG1248 - - - AT2G34357.1 - ARM repeat superfamily protein Cre04.g214350 14674.0 2 20.0591603509 8.54940445001e-05 - DNA polymerase alpha, catalytic subunit Homologous to eukaryotic DNA polymerase alpha, catalytic subunit. Involved in DNA replication; a class B polymerase.. See Burgers et al. (2001) (PMID: 11579108). Previously annotated as POLA1 g4690.t1,POLA1 PF12254,PF08996,PF00136,PF03104 PTHR10322,PTHR10322:SF3 KOG0970 2.7.7.7 K02320 GO:0001882,GO:0003887,GO:0006260,GO:0000166,GO:0003677 AT5G67100.1 ICU2 DNA-directed DNA polymerases Cre08.g386000 14109.0 2 19.2868129611 0.000159817803279 - - - g9082.t1, g9082.t2 PF00400,PF05641 - - - - GO:0003723 - - - Cre15.g634701 14309.0 2 19.5602102673 0.000170138235222 - - - g15304.t1 PF00098,PF00270 PTHR13710 - - - GO:0003676,GO:0008270,GO:0006310,GO:0008026,GO:0005524 AT1G27880.1 - DEAD/DEAH box RNA helicase family protein Cre12.g556653 13821.0 2 18.8931208403 0.000211310423103 - - - g13822.t1,Cre27.g775800.t1.1 - - - - - - - - - Cre16.g687301 13292.0 2 18.1699849656 0.000387487326112 - - - g16345.t1,SRH26 PF00176,PF12054,PF00271,PF02985 PTHR10799:SF225,PTHR10799 KOG0392 - - GO:0003677,GO:0005524,GO:0016817,GO:0003676,GO:0004386,GO:0005515 AT3G54280.1 ATBTAF1,BTAF1,CHA16,CHR16,RGD3 DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases Cre02.g095074 12943.0 2 17.6929066664 0.00050931589483 - Subunit of VPS-C complex Hypothetical Conserved Protein. Similar to VPS11 (vacuolar protein sorting-associated protein 11)-type proteins. Matsuo et al.\'s (2008) roc12 (rhythm of chloroplast) circadian rhythm mutant locus maps here; this mutant exhibits a low-amplitude rhythm phe g1848.t1,Cre11.g471400.t1.1,Cre11.g471400.t1.2,VPS11 PF12451 PTHR23323:SF37,PTHR23323 KOG2114 - - - AT2G05170.1 ATVPS11,VPS11 vacuolar protein sorting 11 Cre02.g074300 13158.0 2 17.9868087705 0.000536854660958 - - - g1319.t1 PF11707 - - - - - AT4G27010.2 - - Cre08.g358580 12674.0 2 17.3251872896 0.000680158049414 - Carbamoyl phosphate synthase, large subunit Carbamoyl phosphate synthase (glutamate dependent), large subunit (EC 6.3.5.5); Target-P predicts plastid targeting. Previously annotated as CMPL1. Identified in as nitrogen-controlled-gene NCG5 expressed upon nitrogen starvation [PMID: 11469597] g8395.t1,Cre28.g776100.t1.1,Cre28.g776100.t1.2,CMP1 PF02787,PF02142,PF02786,PF00289 PTHR11405:SF15,PTHR11405 KOG0370 6.3.5.5 K01955 GO:0004086,GO:0006807,GO:0003824,GO:0005524,GO:0008152 AT1G29900.1 CARB carbamoyl phosphate synthetase B Cre14.g608200 12051.0 2 16.473554681 0.00121748555847 - - - g14661.t1 - - - - - - AT4G13750.1 NOV Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein Cre09.g396661 12174.0 2 16.6416940243 0.0012335161328 - - - g9842.t1,Cre02.g133350.t1.1 - - - - - - AT1G64570.1 DUO3 Homeodomain-like superfamily protein Cre16.g680900 12193.0 2 16.6676667684 0.0012335161328 - DNA-directed RNA polymerase II, largest subunit DNA-directed RNA polymerase II largest subunit(EC 2.7.7.6) g16489.t1,Cre16.g680900.t1.1,RPB1 PF04992,PF04998,PF05000,PF04983,PF04997,PF04990,PF05001,PF00623 PTHR19376,PTHR19376:SF14 KOG0260 2.7.7.6 K03006 GO:0003677,GO:0003899,GO:0006351,GO:0005665,GO:0006366 AT4G35800.1 NRPB1,RNA_POL_II_LS,RNA_POL_II_LSRNA_POL_II_LS,RPB1 RNA polymerase II large subunit Cre01.g053450 11787.0 2 16.1126702369 0.00164158767623 CYA1 - - g1182.t1 PF00211 PTHR16305:SF7,PTHR16305 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre07.g329861 11502.0 2 15.7230790757 0.00222960105447 - - - g7676.t1,Cre07.g329861.t1.1 - - - - - - - - - Cre07.g352251 11540.0 2 15.7750245639 0.00223119671788 - - - g8193.t1 PF00271,PF07717,PF00270,PF04408 PTHR18934:SF68,PTHR18934 KOG0926 - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G33390.1 ATFAS4,FAS4 RNA helicase family protein Cre08.g368900 11678.0 2 15.9636687051 0.00231271019226 - - - g8645.t2,Cre08.g368900.t1.1,TSA2, g8645.t1,TSA2 PF02272,PF07973,PF01411 PTHR11777 KOG0188 6.1.1.7 K01872 GO:0003676,GO:0005524,GO:0005737,GO:0006412,GO:0016876,GO:0043039,GO:0000166,GO:0004813,GO:0006419 AT5G22800.1 EMB1030,EMB263,EMB86 Alanyl-tRNA synthetase, class IIc Cre07.g328550 11391.0 2 15.5713435708 0.00312121150471 - Subunit of the VPS-C complex Expressed Protein, similar to VPS18/dor, a component of the VPS-C complex required for vacuolar targeting; model still needs some work g7642.t1,VPS18 PF05131 PTHR23323,PTHR23323:SF26 KOG2034 - - - AT1G12470.1 - zinc ion binding Cre17.g733800 11447.0 2 15.6478948165 0.00318021610875 - - - g17739.t1 - - - - - - - - - Cre10.g432000 10938.0 2 14.9520986724 0.00390113922996 - UV-damaged DNA binding complex subunit 1 protein Homologous to eukaryotic UV-DDB1(UV-damaged DNA binding complex subunit 1 protein); Nucleus g10662.t1,Cre10.g432000.t1.1,DDB1 PF03178 PTHR10644:SF3,PTHR10644 KOG1897 - K10610 GO:0003676,GO:0005634 AT4G05420.1 DDB1A damaged DNA binding protein 1A Cre06.g278269 10920.5 2 14.9281764081 0.00390113922996 - - - g6411.t1,Cre13.g601750.t1.1 - PTHR21704,PTHR21704:SF8 - - K06672 - AT5G15540.1 ATSCC2,EMB2773,SCC2 PHD finger family protein Cre05.g235550 11083.0 2 15.1503117193 0.0040085677382 - - - g5416.t1 - - - - - - - - - Cre06.g269400 10824.0 2 14.7962622079 0.005264242887 - - - g6044.t1 - - - - - - - - - Cre03.g189605 10841.0 2 14.8195009789 0.00527411719401 - - - g3927.t1,Cre03.g189605.t1.1 - PTHR14027,PTHR14027:SF10 KOG2002 - - - AT2G06210.1 ELF8,VIP6 binding Cre03.g205350 10835.5 2 14.811982553 0.00527411719401 - - - g4206.t1,EXN8 PF01612 - - - - GO:0003676,GO:0005622,GO:0006139,GO:0008408 - - - Cre10.g460532 10857.0 2 14.8413727634 0.00528443344758 APC2b - - g11290.t1,APC2 PF00888,PF08672 PTHR11932,PTHR11932:SF1 - - K03349 GO:0006511,GO:0031461,GO:0031625 AT2G04660.1 APC2 anaphase-promoting complex/cyclosome 2 Cre11.g477800 10883.0 2 14.8769144132 0.0053391482666 - - - g11862.t1,HDA10 PF00023,PF00850 PTHR10625,PTHR10625:SF22 KOG4412 - - GO:0005515 AT4G33470.1 ATHDA14,hda14 histone deacetylase 14 Cre02.g075150 10502.0 2 14.356092545 0.00678226245877 - DNA-directed RNA polymerase II, 135 kDa polypeptide DNA-directed RNA polymerase II 135 kDa polypeptide; RPOB373aa RPB373aa; contains an intein spliced out post-translationally [see PMID: 97248673]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 183 g1344.t2,RPB2, g1344.t1,Cre02.g075150.t1.1,RPB2 PF04567,PF04566,PF04561,PF04565,PF04563,PF04560,PF00562 PTHR20856:SF7,PTHR20856 KOG0214 2.7.7.6 K03010 GO:0003677,GO:0003899,GO:0006351,GO:0032549 AT4G21710.1 EMB1989,NRPB2,RPB2 DNA-directed RNA polymerase family protein Cre15.g635150 10496.0 2 14.3478906258 0.00678226245877 - - - g15318.t1 - - KOG4462 - - - - - - Cre08.g376800 10568.0 2 14.446313656 0.00694508051841 - - - g8875.t1 PF03144,PF11987,PF00009 PTHR23115:SF41,PTHR23115 - - - GO:0005525,GO:0003924 AT4G11160.1 - Translation initiation factor 2, small GTP-binding protein Cre16.g660390 10572.0 2 14.4517816022 0.00694508051841 - - - g15951.t2, g15951.t1 PF00685,PF00415 PTHR15723 - 2.8.2.33 K08106 GO:0008146 AT5G48330.1 - Regulator of chromosome condensation (RCC1) family protein Cre07.g322450 10087.0 2 13.7887931348 0.00852159435381 - - - g7450.t1,HLM13 PF00855,PF00856 PTHR22884,PTHR22884:SF124 - 2.1.1.43 K06101 GO:0005515 AT1G77300.1 ASHH2,CCR1,EFS,SDG8 histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) Cre13.g603900 10080.0 2 13.7792242291 0.00852159435381 - - - g14572.t1,Cre13.g603900.t1.1,TSF1 PF03483,PF03484 PTHR10947 KOG2472 6.1.1.20 K01890 GO:0003723,GO:0004826,GO:0006412,GO:0000287,GO:0005524,GO:0006432 AT1G72550.1 - tRNA synthetase beta subunit family protein Cre01.g038050 10183.0 2 13.9200238417 0.00866181563827 - - - g852.t1,COP PF00512,PF00072,PF01036,PF02518 PTHR24423 - - - GO:0000155,GO:0007165,GO:0016020,GO:0000156,GO:0000160,GO:0006355,GO:0005216,GO:0006811,GO:0005524 AT2G17820.1 AHK1,ATHK1,HK1 histidine kinase 1 Cre16.g679200 9807.0 2 13.4060369062 0.0108094748589 - - - g16526.t1,PEX1 PF09262,PF00004 PTHR23077:SF12,PTHR23077 KOG0733 - - GO:0005524,GO:0005777,GO:0007031 AT5G08470.1 PEX1 peroxisome 1 Cre14.g613250 9948.0 2 13.598782007 0.0111230507398 - - - g14778.t1 - - KOG3454 - - - - - - Cre02.g087950 9959.0 2 13.6138188589 0.0111469139317 - - - g1636.t1,Cre02.g087950.t1.1,TSM1 PF01588,PF09334 PTHR11946,PTHR11946:SF20 KOG1247 6.1.1.10 K01874 GO:0000049,GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418 AT4G13780.1 - methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative Cre09.g409350 9483.0 2 12.9631332703 0.0138839841224 - Fe-S ABC transporter Essential Fe-S protein required for ribosome biogenesis and translation initiation. ABC-type ATPase. g10145.t1,Cre09.g409350.t1.1,RLI1 PF04068,PF00037,PF00005 PTHR19248 KOG0063 - K06174 GO:0009055,GO:0051536,GO:0005524,GO:0016887 AT4G19210.1 ATRLI2,RLI2 RNAse l inhibitor protein 2 Cre06.g258200 9526.0 2 13.0219136911 0.0138839841224 - - - g5803.t1 PF00004 PTHR23069 - - - GO:0005524 AT3G15120.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre12.g493400 9454.0 2 12.9234906609 0.0138839841224 SMC4 Structural Maintenance of Chromosomes protein Subunit of the condensin complex, which reorganizes chromosomes during cell division; coiled-coil protein of the SMC family involved in chromosome condensation and segregation. ChromoDB CPC3401 g12082.t1 PF02463,PF06470 PTHR18937:SF13,PTHR18937 KOG0996 - K06675 GO:0005524,GO:0005694,GO:0005515,GO:0051276 AT5G48600.2 ATCAP-C,ATSMC3,ATSMC4,SMC3 structural maintenance of chromosome 3 Cre02.g143200 9518.0 2 13.0109777989 0.0138839841224 - - - g2621.t1,TSA1 PF02272,PF01411,PF07973 PTHR11777 KOG0188 6.1.1.7 K01872 GO:0003676,GO:0000166,GO:0004813,GO:0005524,GO:0005737,GO:0006412,GO:0006419,GO:0016876,GO:0043039 AT1G50200.1 ACD,ALATS Alanyl-tRNA synthetase Cre06.g304650 9590.0 2 13.1094008291 0.0139975568033 - - - g7052.t1,PIK3 PF00454 PTHR10048,PTHR10048:SF22 - 2.7.1.67 K00888 GO:0004428,GO:0046854,GO:0048015,GO:0016773 AT5G09350.1 PI-4KBETA2,PI4KBETA2 phosphatidylinositol 4-OH kinase beta2 Cre09.g397702 9624.0 2 13.1558783711 0.0140563737091 - - - g9330.t1,Cre09.g397600.t1.3 - PTHR23023 - - - - AT5G45180.1 - Flavin-binding monooxygenase family protein Cre12.g553800 9663.0 2 13.2091908458 0.0141555611084 - - - g13457.t1 - - KOG0505 - - - AT2G03430.1 - Ankyrin repeat family protein Cre06.g280500 9694.0 2 13.2515674282 0.0142790773872 - - - g6525.t1,PPP23, g6525.t2,PPP23 PF00035 - KOG2133 - - GO:0003725,GO:0005622 AT5G01270.2, AT4G21670.1 ATCPL2,CPL2, ATCPL1,CPL1,FRY2 carboxyl-terminal domain (ctd) phosphatase-like 2, C-terminal domain phosphatase-like 1 Cre04.g220600 9257.0 2 12.6541943143 0.017612291336 - - - g4813.t1 - - - - - - - - - Cre10.g443700 9225.0 2 12.6104507454 0.017612291336 - - - g10909.t1 PF04564 - - - - GO:0000151,GO:0004842,GO:0016567 AT5G18330.1 - ARM repeat superfamily protein Cre15.g639150 9258.0 2 12.6555613009 0.017612291336 - - - g15426.t2, g15426.t1 PF07766 PTHR14009 KOG1043 - - - AT1G65540.1 - LETM1-like protein Cre06.g258733 9403.0 2 12.8537743478 0.0178109234875 - - - g5818.t2,Cre06.g258750.t1.2,LEU2, g5818.t1,Cre06.g258750.t2.1,LEU2 PF00682,PF08502 PTHR10277:SF9,PTHR10277 - 2.3.3.13 K01649 GO:0003824,GO:0003852,GO:0009098 AT1G18500.1 IPMS1,MAML-4 methylthioalkylmalate synthase-like 4 Cre01.g030450 8875.0 2 12.1320054596 0.0220938775591 - - - g690.t1 PF00443 PTHR24006,PTHR24006:SF196 KOG1864 3.1.2.15 K11858 GO:0004221,GO:0006511 AT3G49600.1 ATUBP26,SUP32,UBP26 ubiquitin-specific protease 26 Cre26.g756597 8915.0 2 12.1866849209 0.0220938775591 - - - g18289.t1,Cre59.g791850.t1.1,Cre59.g791850.t1.2 - - KOG4375 - - - - - - Cre13.g605050 9040.0 2 12.3575582372 0.0224552970091 - - - g14594.t1 PF12460 PTHR12891 - - - - AT5G48120.1 - ARM repeat superfamily protein Cre06.g278221 9084.0 2 12.4177056445 0.0226979609486 - Trehalose-6-phosphate synthase/phosphatase Trehalose-6-phosphate synthase/phosphatase, a glycosyl transferase g6363.t1,Cre13.g599350.t1.1,TPS1 PF02358,PF00982 PTHR10788 KOG1050 2.4.1.15,3.1.3.12 K00697,K01087 GO:0003824,GO:0005992 AT1G70290.1 ATTPS8,ATTPSC,TPS8 trehalose-6-phosphatase synthase S8 Cre13.g581300 8681.0 2 11.8668100727 0.0288344829701 - - - g14277.t1 - - - - - - - - - Cre07.g343150 8718.0 2 11.9173885743 0.0289860443599 - - - g7982.t1 - - - - - - - - - Cre16.g673550 8779.0 2 12.0007747527 0.0293253800039 CGLD36 - - g16650.t1 PF01636,PF01008 PTHR10233,PTHR10233:SF6 KOG1468 - - GO:0044237 AT1G49820.1 ATMTK,MTK S-methyl-5-thioribose kinase Cre13.g565000 8812.0 2 12.0458853082 0.0295868766806 - - - g13900.t1 - - - - - - - - - Cre17.g696750 8820.0 2 12.0568212004 0.0295937854888 - - - g16900.t1 PF00249 - - - - - AT5G59570.1 - Homeodomain-like superfamily protein Cre17.g709400 8857.0 2 12.1073997021 0.0300213098162 - - - g17183.t1 PF10367 PTHR12894,PTHR12894:SF4 - - - - AT1G22860.1 - Vacuolar sorting protein 39 Cre06.g262650 8381.0 2 11.4567141135 0.0366769512275 OPR22 - - g5900.t1 PF08373 - - - - - - - - Cre17.g702600 8341.0 2 11.4020346523 0.0366769512275 - Putative tyrosine kinase Putative tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g17033.t1,PTK5 PF00069 PTHR23257:SF338,PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT3G46920.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre06.g252800 8381.0 2 11.4567141135 0.0366769512275 - - - g5661.t1,Cre06.g252801.t1.3 PF01764 PTHR21493:SF9,PTHR21493 - - - GO:0004806,GO:0006629 AT5G18630.1 - alpha/beta-Hydrolases superfamily protein Cre02.g095101 8378.0 2 11.4526131539 0.0366769512275 - - - g1874.t1,Cre11.g472450.t1.1,Cre11.g472450.t1.2 PF00400,PF00076 PTHR24012:SF186,PTHR24012 KOG4205 - - GO:0003676 AT5G51300.1 - splicing factor-related Cre09.g387900 8366.0 2 11.4362093155 0.0366769512275 - - - g9546.t1 - PTHR24420,PTHR24420:SF487 - - - - AT3G51740.1 IMK2 inflorescence meristem receptor-like kinase 2 Cre12.g553750 8397.0 2 11.478585898 0.0367199344838 - - - g13458.t1,SPL26 PF00076,PF00013 PTHR11208,PTHR11208:SF6 KOG0119 - K13095 GO:0003676,GO:0003723 AT5G51300.1 - splicing factor-related Cre09.g408650 8432.0 2 11.5264304266 0.0368791400761 - - - g10128.t1 - - - - - - - - - Cre01.g048200 8460.0 2 11.5647060494 0.0370914462339 - - - g1071.t1 - PTHR10887,PTHR10887:SF127 - - - - AT5G47010.1 ATUPF1,LBA1,UPF1 RNA helicase, putative Cre02.g108800 8156.0 2 11.1491421441 0.0452947350652 DNJ26 DnaJ-like protein Putative chloroplast-targeted TPR protein contains heat shock protein DnaJ domain (pfam00226) in C terminus and N-terminal TPR, Tetratricopeptide repeat domain (cd00189); weak homology with Arabidopsis Q94CJ9. Previously annotated as TPR10 g2230.t1,TPR10 PF00226 PTHR22904:SF36,PTHR22904 KOG0550 - - GO:0031072 AT5G12430.1 - Heat shock protein DnaJ with tetratricopeptide repeat Cre07.g356550 8162.0 2 11.1573440633 0.0452947350652 - - - g8289.t2, g8289.t1 PF00211 PTHR24790,PTHR24790:SF7 KOG3671 - - GO:0009190,GO:0016849,GO:0035556 - - - Cre02.g080350 8181.0 2 11.1833168074 0.0452947350652 - - - g1468.t1 PF02148,PF00443,PF00627 PTHR24006,PTHR24006:SF260 - 3.1.2.15 K11836 GO:0008270,GO:0004221,GO:0006511,GO:0005515 AT3G20630.1 ATUBP14,PER1,TTN6,UBP14 ubiquitin-specific protease 14 Cre15.g640800 8128.0 2 11.1108665212 0.0452947350652 - - - g15328.t1,Cre15.g640800.t1.1 - PTHR22929 - - - - AT4G39160.1 - Homeodomain-like superfamily protein Cre02.g080450 8212.0 2 11.2256933898 0.0453798168817 - - - g1470.t1,Cre02.g080450.t1.1 - - - - - - - - - Cre17.g736050 8218.0 2 11.233895309 0.0454072793694 - - - g17805.t1,Cre17.g736050.t1.1 - - - - - - - - - Cre01.g015250 8251.0 2 11.2790058645 0.0459175247954 - DNA polymerase delta, catalytic subunit Homologous to eukaryotic DNA polymerase delta, catalytic subunit. Involved in DNA replication; a class B polymerase. See Burgers et al. (2001) (PMID: 11579108). Previously annotated as POLD1 g368.t1,POLD1 PF00136,PF03104 PTHR10322,PTHR10322:SF11 KOG0969 2.7.7.7 K02327 GO:0000166,GO:0003677,GO:0003887,GO:0006260 AT5G63960.1 EMB2780 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases Cre13.g606350 22232.0 3 30.3908445497 1.15985217336e-07 - - - g14621.t1, g14621.t2 - - - - - - AT4G00800.1 - transducin family protein / WD-40 repeat family protein Cre14.g618860 17430.0 3 23.8265752295 2.92105832915e-05 - - - g14912.t1,SRH24 PF00176,PF00271,PF07529 PTHR10799,PTHR10799:SF75 - 3.6.4.12 K11681 GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT3G12810.1 chr13,PIE1,SRCAP SNF2 domain-containing protein / helicase domain-containing protein Cre01.g016050 15339.0 3 20.9682063938 0.000235896225549 - Splicing factor, component of the U5 snRNP and of the spliceosome Central component of the spliceosome, which may play a role in aligning the pre-mRNA 5\' and 3\' exons for ligation. Interacts with U5 snRNA, and with pre-mRNA 5\' splice sites in B spliceosomes and 3\' splice sites in C spliceosomes. Part of the U5 snRNP com g382.t1,Cre01.g016050.t1.1,PRP8 PF10598,PF12134,PF08084,PF08083,PF10596,PF08082,PF10597,PF01398 PTHR11140 KOG1795 - K12856 GO:0000398,GO:0005681,GO:0005515 AT1G80070.1 EMB14,EMB177,EMB33,SUS2 Pre-mRNA-processing-splicing factor Cre10.g461700 15525.0 3 21.2224658885 0.000247420197495 - - - g11318.t1 - - - - - - - - - Cre13.g573450 14986.0 3 20.4856601485 0.000318095744834 - - - g14099.t1,Cre13.g573450.t1.1,CPS PF03178 PTHR10644 KOG1896 - K14401 GO:0003676,GO:0005634 AT5G51660.1 ATCPSF160,CPSF160 cleavage and polyadenylation specificity factor 160 Cre12.g493550 14623.0 3 19.9894440379 0.000566888854198 - - - g12079.t1,Cre12.g493550.t1.1,THK3 PF00515 PTHR11652:SF12,PTHR11652 - - K12600 GO:0005515,GO:0003735,GO:0005622,GO:0005840,GO:0006412 AT1G76630.2 - Tetratricopeptide repeat (TPR)-like superfamily protein Cre13.g583500 13892.0 3 18.990176884 0.000970259087275 - - - g14326.t1 - PTHR15137 KOG4462 - K03128 - AT1G73960.2 TAF2 TBP-associated factor 2 Cre02.g075600 13616.0 3 18.6128886015 0.00126955208776 - - - g1353.t1 PF00940 PTHR10102 KOG4462 2.7.7.6 K10908 GO:0003677,GO:0003899,GO:0006351 AT5G15700.1 - DNA/RNA polymerases superfamily protein Cre17.g736400 13214.0 3 18.0633600162 0.00241099673274 - - - g17812.t1,SCC3 PF08514 PTHR11199 - - K13055 - AT2G47980.1 ATSCC3,SCC3 sister-chromatid cohesion protein 3 Cre09.g397771 12896.0 3 17.6286582994 0.00318021610875 - - - g9873.t1,Cre02.g134800.t1.1 - - - - - - - - - Cre09.g398050 12443.0 3 17.009413401 0.00395796908619 - - - g9321.t1 - PTHR23023 - - - - - - - Cre03.g167200 12101.0 3 16.5419040076 0.00510606634882 - - - g3432.t1 - - - - - - - - - Cre05.g248550 12164.0 3 16.628024159 0.00511517223694 - - - g5161.t1 PF01814,PF05495 PTHR21319 KOG1940 - - GO:0008270 AT3G18290.1 BTS,EMB2454 zinc finger protein-related Cre11.g467575 12238.0 3 16.7291811623 0.00515884718358 - - - g11504.t1, g11504.t2 PF00004,PF07724,PF10431 PTHR11638, PTHR11638:SF18,PTHR11638 KOG1051 - - GO:0005524 AT5G15450.1 APG6,CLPB-P,CLPB3 casein lytic proteinase B3 Cre06.g278197 11901.0 3 16.2685067014 0.00660559804521 - - - g6340.t1,Cre13.g598150.t1.1 PF02902 PTHR12438:SF7,PTHR12438 - - - GO:0006508,GO:0008234 AT1G09730.1 - Cysteine proteinases superfamily protein Cre09.g410650 11672.0 3 15.9554667859 0.00852159435381 - N-5-phosphoribosyl-ATP transferase Performs the first step in the histidine biosynthesis pathway, the condensation of ATP with PRPP to form phosphoribosyl-ATP. Presumably, the HIS1 gene contains within one of its internal introns a gene for a protein phosphatase 2C, encoded on the other s g10171.t3,HIS1, g10171.t2,HIS1, g10171.t1,Cre09.g410650.t1.1,HIS1 PF02719,PF08029,PF01634, PF08029,PF01634, PF01634 PTHR21403 KOG2831 2.4.2.17 K00765 GO:0000105,GO:0003879,GO:0005737, GO:0009058,GO:0000105,GO:0000287,GO:0003879,GO:0005737, GO:0000105,GO:0000287,GO:0003879,GO:0005737 AT1G58080.1, AT1G09795.1 ATATP-PRT2,ATP-PRT2,HISN1B, ATATP-PRT1,ATP-PRT1,HISN1A ATP phosphoribosyl transferase 1, ATP phosphoribosyl transferase 2 Cre16.g685901 11608.0 3 15.8679796479 0.00852159435381 - - - g16379.t1 PF08506,PF03378,PF03810 PTHR10997:SF8,PTHR10997 KOG1992 - - GO:0006886,GO:0005634,GO:0005737,GO:0008262,GO:0008283,GO:0008565 AT2G46520.1 - cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative Cre12.g543850 11662.0 3 15.9417969206 0.00852159435381 - - - g13692.t1 PF09497 - - - - GO:0016455,GO:0006357,GO:0016592 - - - Cre09.g402050 11782.0 3 16.1058353043 0.00881064864046 - - - g9223.t1 - - - - - - - - - Cre12.g497350 11292.0 3 15.4360119042 0.0105950737197 PPR13 - - g12638.t1 - - - - - - AT3G04260.1 PTAC3 plastid transcriptionally active 3 Cre17.g705650 11292.0 3 15.4360119042 0.0105950737197 - - - g17102.t1, g17102.t2 - - - - - - - - - Cre08.g366150 11354.0 3 15.5207650691 0.0106418990263 - - - g8580.t1 - - - - - - AT3G50590.1 - Transducin/WD40 repeat-like superfamily protein Cre10.g418800 10924.0 3 14.932960861 0.0137056791728 - - - g10368.t1 PF00612 - - - - GO:0005515 AT2G20290.1 ATXIG,XIG myosin-like protein XIG Cre15.g641950 11049.0 3 15.1038341773 0.0137230785885 - - - g15479.t1 - - - - - - - - - Cre06.g290250 11201.0 3 15.31161613 0.0139920345887 - - - g6733.t1 - - KOG3263 - - - - - - Cre06.g253200 10633.0 3 14.5351677805 0.0173109721842 - Protein tyrosine kinase Protein tyrosine kinase. Previously annotated as PKY1 g5674.t1,PKY1 PF07714 PTHR23257 KOG0192 - - GO:0004672,GO:0006468 AT3G24715.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre07.g344050 10726.0 3 14.6622975279 0.0173109721842 - - - g8004.t1 PF00400,PF08625 PTHR19854,PTHR19854:SF22 KOG0319 - K14555 GO:0006364,GO:0032040 AT5G16750.1 TOZ Transducin family protein / WD-40 repeat family protein Cre16.g651750 10775.0 3 14.7292798679 0.0173615259571 - - - g15764.t1,Cre16.g651750.t1.1,TSI PF00133,PF08264 PTHR11946:SF11,PTHR11946 KOG0434 6.1.1.5 K01870 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418 AT4G10320.1 - tRNA synthetase class I (I, L, M and V) family protein Cre13.g587800 10836.0 3 14.8126660463 0.0176047443101 - - - g14419.t1 - - - - - - AT4G38760.1 - Protein of unknown function (DUF3414) Cre12.g502550 10910.0 3 14.9138230495 0.017612291336 - - - g12520.t1 - - - - - - - - - Cre02.g074800 10469.0 3 14.3109819895 0.0212131781831 - Adenylate/guanylate cyclase Similar to guanylate cyclase 1 (GCYB2) from Homo sapiens g1336.t1,CYG9, g1336.t2,CYG9 PF00211 PTHR11920:SF147,PTHR11920 KOG0845 - - GO:0009190,GO:0016849,GO:0035556 - - - Cre04.g217400 10515.0 3 14.3738633699 0.0213771074824 - - - g4526.t1,Cre04.g217400.t1.1 - - - - - - - - - Cre02.g141946 10523.0 3 14.3847992622 0.0213903789712 - - - g2739.t1, g2739.t2, g2739.t3 PF07714 PTHR23257,PTHR23257:SF99 KOG0595 - - GO:0004672,GO:0006468 AT1G67890.1, AT5G49470.3 - PAS domain-containing protein tyrosine kinase family protein Cre01.g033091 10612.0 3 14.5064610634 0.0218216039747 - - - g748.t3, g748.t2, g748.t1 PF01042,PF01902 PTHR12196 KOG2316 - - - AT3G04480.1 - endoribonucleases Cre08.g384864 10062.0 3 13.7546184715 0.0268386612816 - - - g9057.t1,Cre08.g384864.t1.1 PF00018 - - - - GO:0005515 AT2G07360.1 - SH3 domain-containing protein Cre04.g211600 9757.5 3 13.3383710729 0.0339276978928 - - - g4747.t1,SNF1 PF00069,PF02149 PTHR24343,PTHR24343:SF123 KOG0583 - - GO:0004672,GO:0005524,GO:0006468,GO:0004674 AT3G01090.2 AKIN10,KIN10,SNRK1.1 SNF1 kinase homolog 10 Cre16.g673250 9841.0 3 13.4525144483 0.0340883549702 NRR1 - - g16657.t1 PF03110 - - - - GO:0003677,GO:0005634 AT1G20980.1 ATSPL14,FBR6,SPL14,SPL1R2 squamosa promoter binding protein-like 14 Cre02.g144252 9852.0 3 13.4675513001 0.0340952291663 - - - g2590.t1 PF07885 PTHR24567:SF22,PTHR24567 - - - - AT3G02850.1 SKOR STELAR K+ outward rectifier Cre17.g700500 9965.0 3 13.6220207781 0.0349109237577 - - - g16987.t1 - - - - - - - - - Cre17.g699000 9973.0 3 13.6329566703 0.0349527084279 PAT1 Phosphate acetyltransferase Putative phosphate acetyltransferase (EC 2.3.1.8); phosphotransacetylase; similarity to prokaryotic phosphate acetyltransferase (e.g., Desulfovibrio GenBank AAS97500) g16954.t2, g16954.t1,Cre17.g699000.t1.1 PF01515,PF07085 PTHR23406:SF3,PTHR23406 - - - GO:0008152,GO:0008415 - - - Cre16.g676400 10012.0 3 13.686269145 0.0353406283863 - - - g16588.t1,Cre16.g676400.t1.1,HEL63 PF00271,PF00270 PTHR24031,PTHR24031:SF45 KOG0334 3.6.4.13 K12811 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT1G20920.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre11.g467562 9490.0 3 12.972702176 0.041158581193 - - - g11491.t1,Cre18.g750250.t1.1 - - - - - - - - - Cre06.g252100 9548.0 3 13.0519873948 0.0411804788845 - - - g5645.t1,Cre06.g252100.t1.1 - PTHR12389 - - - - AT5G58410.1 - HEAT/U-box domain-containing protein Cre07.g324000 9647.0 3 13.1873190613 0.0418672588151 - - - g7484.t1,Cre07.g324000.t1.1 - - - - - - AT1G33410.2 ATNUP160,NUP160,SAR1 SUPPRESSOR OF AUXIN RESISTANCE1 Cre10.g433000 9700.0 3 13.2597693474 0.0421664602423 - - - g10683.t1,TSG2 PF02091,PF02092 - - 6.1.1.14 K14164 GO:0000166,GO:0004820,GO:0005524,GO:0005737,GO:0006412,GO:0006426 AT3G48110.1 EDD,EDD1 glycine-tRNA ligases Cre04.g217000 9699.0 3 13.2584023609 0.0421664602423 - - - g4517.t1 - - - - - - - - - Cre03.g161800 28028.0 4 38.3138984814 9.79409952908e-10 - - - g3315.t1,Cre03.g161800.t1.1 PF07728 PTHR22908,PTHR22908:SF24 KOG1808 - K14572 GO:0005524,GO:0016887 AT1G67120.1 - ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding Cre13.g579100 19642.0 4 26.8503494353 1.79369294363e-05 - Anaphase promoting complex subunit 1 (partial) Subunit 1 of Anaphase Promoting Complex. Cell cycle regulated E3 ubiquitin ligase. Gene model should be combined with downstream model, Au9.Cre13.g579050(-) g14227.t1,APC1 - PTHR12827 - - K03348 - AT5G05560.1 EMB2771 E3 ubiquitin ligase, putative Cre16.g661400 17655.0 4 24.1341471989 0.00010090480255 - - - g15971.t1 - PTHR23304,PTHR23304:SF78 KOG3671 - - - - - - Cre10.g425501 16841.0 4 23.0214201629 0.000242174748433 - - - g10516.t1 PF12157,PF00439,PF09247 PTHR13900 KOG1995 - K03125 GO:0005515 AT1G32750.1 GTD1,HAC13,HAF01,HAF1,TAF1 HAC13 protein (HAC13) Cre03.g179300 15904.0 4 21.7405537837 0.000549245864066 - - - g3711.t2,SRH6, g3711.t1,SRH6 PF00271,PF00385,PF00176 PTHR10799,PTHR10799:SF70 KOG0384 3.6.4.12 K11367 GO:0003676,GO:0004386,GO:0005524,GO:0003677 AT2G13370.1 CHR5 chromatin remodeling 5 Cre06.g294700 15757.0 4 21.5396067637 0.000730446558868 - - - g6821.t1 PF01477 PTHR10877 KOG0978 - - GO:0005515 AT1G05320.1 - - Cre15.g641527 15853.0 4 21.6708374706 0.000745889053826 - - - g15467.t1, g15467.t2 PF00023 PTHR24158,PTHR24158:SF306 KOG4412 - - GO:0005515 AT5G14230.1 - - Cre12.g518107 14347.0 4 19.6121557554 0.00303595652595 - - - g12778.t1,Cre12.g518107.t1.1 PF04182 - - - - - AT1G17450.2 - B-block binding subunit of TFIIIC Cre01.g051550 14037.0 4 19.1883899309 0.00385986521702 - DEAD/DEAH box helicase Contains a conserved C-terminal C2H2 Zn-finger domain; this particular helicase has been identified by comparative genomics as being present only in organisms having cilia, including non-motile cilia. Previously annotated as SSA9 g1144.t1,HEL8 PF00271,PF07717,PF04408 PTHR18934 KOG0922 - - GO:0003676,GO:0004386,GO:0005524 AT3G26560.1 - ATP-dependent RNA helicase, putative Cre04.g225000 14081.0 4 19.2485373383 0.00390113922996 - - - g4917.t1, g4917.t2, g4917.t3 - - - - - - - - - Cre03.g203345 13377.0 4 18.2861788207 0.00614283800399 - - - g4396.t1,Cre19.g753250.t1.1,Cre19.g753250.t1.2 - - - - - - - - - Cre12.g515050 12992.0 4 17.7598890064 0.00798612823354 - Histone-lysine N-methyltransferase Protein contains a SET domain with similarity to Arabidopsis thaliana ATX5, SET29, SDG29 (At5g53430); [PMID: 16100335]. Previously annotated as SET4. ChromoDB SDG3411 g12708.t1,HLM18,SET4 PF00628,PF01342,PF00856 PTHR13793,PTHR13793:SF46 KOG1085 - - GO:0005515,GO:0003677,GO:0005634 AT3G61740.1 ATX3,SDG14 SET domain protein 14 Cre06.g304550 13133.0 4 17.9526341072 0.00808950267483 - Poly(A)-ribonuclease Sequence similarity with PAB-dependent poly(A)-specific ribonuclease subunit PAN2 (PAB1P-dependent poly(A)-nuclease) human, yeast. Also similar to ubiquitin specific protease 52 (usp52). Previously annotated as PAN2 but this conflicts with the series rel g7050.t1,PAN2,PAR1 PF00929 PTHR15728 - 3.1.13.4 K12571 - AT5G25800.1 - Polynucleotidyl transferase, ribonuclease H-like superfamily protein Cre08.g371957 12680.0 4 17.3333892088 0.0101450738086 - - - g8713.t1 - PTHR12848 KOG1517 - K07204 - AT3G08850.1 ATRAPTOR1B,RAPTOR1,RAPTOR1B HEAT repeat ;WD domain, G-beta repeat protein protein Cre09.g395584 12117.0 4 16.563775792 0.015555713773 - - - g9813.t1,Cre02.g132100.t1.1 - - KOG0107 - - - - - - Cre03.g159350 11803.0 4 16.1345420214 0.0188132230512 - - - g3263.t1 PF00400 PTHR22847:SF228,PTHR22847 KOG0286 - - - AT3G49660.1 - Transducin/WD40 repeat-like superfamily protein Cre10.g462100 11947.0 4 16.3313880818 0.0190658674853 - - - g11328.t1 - - - - - - - - - Cre01.g055600 11972.0 4 16.3655627451 0.0191506493827 - - - g1244.t1,KIL15 PF00225 PTHR24115 KOG0240 - - GO:0003777,GO:0005524,GO:0007018 AT3G44050.1 - P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre09.g415400 11626.0 4 15.8925854055 0.0238095436261 - - - g10285.t1 PF08314 PTHR15922,PTHR15922:SF2 - - - - AT5G24350.1 - - Cre06.g297016 11635.0 4 15.9048882843 0.0238095436261 - - - g6872.t1 PF00271,PF04851 PTHR11274 KOG1123 3.6.4.12 K10843 GO:0003676,GO:0004386,GO:0005524,GO:0003677,GO:0016787 AT5G41360.1 ATXPB2,XPB2 homolog of Xeroderma pigmentosum complementation group B 2 Cre14.g633750 11634.0 4 15.9035212977 0.0238095436261 - Importin beta-3 homolog Importin beta-3 homolog. Previously annotated as IPB2, but this conflicts with importin beta-2 homolog g15279.t1,IPB2 PF02985 PTHR10527,PTHR10527:SF5 KOG2171 - - GO:0005515 AT5G19820.1 emb2734 ARM repeat superfamily protein Cre02.g143151 11682.0 4 15.9691366512 0.0239891408452 - - - g2623.t1,Cre02.g143100.t1.3 PF04130 - - - - GO:0000226,GO:0000922,GO:0005815 - - - Cre02.g147150 11693.0 4 15.984173503 0.0240244520939 - - - g2517.t1 - - - - - - - - - Cre02.g099750 11245.0 4 15.3717635373 0.0304209729972 - - - g2030.t1 PF00069 PTHR23257 KOG0192 - - GO:0004672,GO:0005524,GO:0006468 AT5G57610.1 - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain Cre09.g404500 11287.0 4 15.4291769716 0.0304209729972 - Spindle pole body protein Related to yeast spindle pole body protein SFI1. Contains at least 19 recognizable SFI repeat sequences, which in the yeast protein act as centrin-binding sequences. g9168.t1,SFI1 - - - - - - - - - Cre03.g209281 11407.0 4 15.5932153553 0.0307790596665 - - - g4451.t1,Cre19.g755650.t1.1 PF00400,PF00637 PTHR12616 KOG2066 - - - AT1G08190.1 ATVAM2,ATVPS41,VAM2,VPS41,ZIP2 vacuolar protein sorting 41 Cre16.g668250 11437.0 4 15.6342249512 0.0310066017726 - - - g16273.t1 - - - - - - - - - Cre02.g087551 10954.0 4 14.9739704569 0.0377213953538 - - - g1626.t1,Cre02.g087550.t1.3 PF07928,PF10475 PTHR12965 - - - GO:0042147 AT4G19490.1 ATVPS54,VPS54 VPS54 Cre06.g288252 10976.0 4 15.0040441606 0.0377511462745 - - - g6692.t1 - - - - - - AT4G33970.1 - Leucine-rich repeat (LRR) family protein Cre09.g392655 10608.0 4 14.5009931173 0.0452947350652 - - - g9730.t1,Cre02.g128450.t1.1,Cre02.g128450.t1.2 - - KOG4674 - - - - - - Cre03.g202449 10640.0 4 14.5447366863 0.0452947350652 - - - g4388.t1,Cre19.g752900.t1.1,Cre19.g752900.t1.2 PF00168 PTHR10774,PTHR10774:SF1 - - - GO:0005515 AT1G53590.1 NTMC2T6.1,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein Cre03.g153150 10716.0 4 14.6486276626 0.0453798168817 - - - g3119.t1,Cre03.g153150.t1.1 PF00069 PTHR24347 KOG0032 - - GO:0004672,GO:0005524,GO:0006468 AT4G09570.1 ATCPK4,CPK4 calcium-dependent protein kinase 4 Cre13.g569651 10739.0 4 14.6800683528 0.0453798168817 - - - g14016.t1 - - - - - - - - - Cre08.g358572 10827.0 4 14.8003631675 0.0460524417458 - Integral membrane protein, plant GCPR-like Mlo family - g8387.t1,Cre28.g776500.t1.1 PF03094 - - - - GO:0008219,GO:0016021 AT2G44110.2 ATMLO15,MLO15 Seven transmembrane MLO family protein Cre17.g734250 10851.0 4 14.8331708442 0.0461973020879 - - - g17753.t1 PF00069,PF07714 PTHR26392,PTHR26392:SF141 - - - GO:0004672,GO:0005524,GO:0006468 AT1G04700.1 - PB1 domain-containing protein tyrosine kinase Cre16.g680150 10850.0 4 14.8318038577 0.0461973020879 - - - g16505.t1 - - - - - - - - - Cre10.g461000 18556.0 5 25.365802063 0.000179782592257 - - - g11303.t1,Cre10.g461000.t1.1 PF07539 PTHR17695 - - - - AT4G30990.2 - ARM repeat superfamily protein Cre05.g247000 17015.0 5 23.2592758192 0.000934789419637 - - - g5192.t1,Cre05.g247000.t1.1 PF00628,PF00439,PF02791 PTHR22880:SF31,PTHR22880 - - - GO:0005515 AT5G12400.1 - DNA binding;zinc ion binding;DNA binding Cre13.g583100 16514.0 5 22.5744155674 0.00117890669316 - - - g14315.t1 PF04413 PTHR23417:SF2,PTHR23417 - - - GO:0005529,GO:0005975,GO:0016740 AT5G03770.1 KDTA KDO transferase A Cre07.g356500 16619.0 5 22.7179491531 0.00119060654077 - - - g8288.t1 PF00211 PTHR24790,PTHR24790:SF7 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre08.g363837 15170.0 5 20.7371856702 0.00452074545272 - - - g8521.t1,POL1A,POLG1X PF00476 PTHR10133 - 2.7.7.7 K02335 GO:0003677,GO:0003887,GO:0006260 AT1G50840.1 POLGAMMA2 polymerase gamma 2 Cre12.g537100 14299.0 5 19.546540402 0.0090976768658 - - - g13207.t1,Cre12.g537100.t1.1,TSV PF00133,PF08264,PF00043 PTHR11946,PTHR11946:SF5 KOG0432 6.1.1.9 K01873 GO:0000166,GO:0004812,GO:0005524,GO:0005737,GO:0006412,GO:0006418,GO:0004832,GO:0006438 AT1G14610.1 TWN2,VALRS valyl-tRNA synthetase / valine--tRNA ligase (VALRS) Cre02.g143800 14355.0 5 19.6230916477 0.00920115899783 - - - g2607.t1,SRH3 PF00176,PF00271 PTHR10799,PTHR10799:SF65 - - - GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT1G03750.1 CHR9 switch 2 Cre12.g525600 13925.0 5 19.0352874395 0.0110673944574 - - - g12934.t1 - PTHR23125,PTHR23125:SF74 KOG1947 - - - AT4G33210.1 SLOMO F-box family protein Cre03.g187700 13388.0 5 18.3012156725 0.0176047443101 - - - g3888.t1,HEL19 PF00271,PF00270 PTHR24031:SF169,PTHR24031 - - - GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT5G08110.1 - nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases Cre12.g523050 12973.0 5 17.7339162623 0.0210938865711 - - - g12881.t1,CCT11 PF01504,PF00118 PTHR23086,PTHR23086:SF7 - 2.7.1.150 K00921 GO:0016307,GO:0046488,GO:0005524,GO:0044267 AT4G33240.3 FAB1A 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases Cre10.g452200 13012.0 5 17.787228737 0.0211086037154 - - - g11108.t1 - - KOG0107 - - - AT5G16780.1 DOT2,MDF SART-1 family Cre09.g390319 13016.0 5 17.7926966831 0.0211086037154 - - - g9665.t1,Cre02.g125650.t1.1 PF09324,PF01369 PTHR10663,PTHR10663:SF42 KOG0929 - - GO:0005086,GO:0005622,GO:0032012 AT3G60860.1 - SEC7-like guanine nucleotide exchange family protein Cre02.g090950 13084.0 5 17.8856517672 0.0212131781831 - - - g1700.t1 - PTHR13317:SF6,PTHR13317 - - - - - - - Cre01.g046237 13088.0 5 17.8911197133 0.0212131781831 - - - g1034.t1, g1034.t2 PF00176,PF00271 PTHR10799,PTHR10799:SF133 KOG1002 - - GO:0003677,GO:0005524,GO:0003676,GO:0004386 AT3G20010.1 - SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related Cre16.g670850 12645.0 5 17.2855446802 0.0261771994924 - - - g16302.t1,Cre16.g670850.t1.1 - - KOG3544 - - - AT3G47890.1 - Ubiquitin carboxyl-terminal hydrolase-related protein Cre17.g733150 12837.0 5 17.5480060941 0.0268386612816 - - - g17717.t1,COP, g17717.t2,COP PF00512,PF00072,PF01036,PF02518 PTHR24423 - - - GO:0000155,GO:0007165,GO:0016020,GO:0000156,GO:0000160,GO:0006355,GO:0005216,GO:0006811,GO:0005524 AT1G27320.1 AHK3,HK3 histidine kinase 3 Cre03.g149800 12871.0 5 17.5944836362 0.0270551876717 - Microtubule associated protein Microtubule associated protein also known as MOR1 and XMAP215/Dis1 g3047.t1,TOG1 - PTHR12609 KOG1820 - - - AT2G35630.1 GEM1,MOR1 ARM repeat superfamily protein Cre14.g628800 12135.0 5 16.5883815496 0.0399922598441 - - - g15145.t1 PF00082 PTHR10795,PTHR10795:SF30 KOG4266 3.4.21.112 K08653 GO:0004252,GO:0006508 AT5G19660.1 ATS1P,ATSBT6.1,S1P SITE-1 protease Cre12.g552650 12118.0 5 16.5651427786 0.0399922598441 - Non-canonical poly(A) polymerase Non-canonical poly(A) polymerase (PAP) g13485.t1,Cre12.g552650.t1.1,PAP8 - PTHR23092,PTHR23092:SF15 KOG1906 - - - AT3G61690.1 - nucleotidyltransferases Cre16.g684100 12187.0 5 16.6594648492 0.0400926308502 - - - g16416.t1,Cre16.g684100.t1.1 - PTHR21663 - - - - AT1G67140.3 SWEETIE HEAT repeat-containing protein Cre05.g241150 12296.0 5 16.808466381 0.0407983886541 - - - g5560.t1 - PTHR14222 - - K11491 - AT4G15890.1 - binding Cre12.g515500 11743.0 5 16.0525228296 0.0478501518354 - - - g12718.t1 PF04780 - KOG1003 - - - AT3G47890.1 - Ubiquitin carboxyl-terminal hydrolase-related protein Cre17.g735650 11784.0 5 16.1085692773 0.0478964333125 - - - g17796.t1 - - - - - - - - - Cre02.g141886 11811.5 5 16.1461614069 0.0479583056824 - - - g2736.t1,Cre15.g646850.t1.1 PF00069 PTHR26392 - - - GO:0004672,GO:0005524,GO:0006468 AT1G67890.1 - PAS domain-containing protein tyrosine kinase family protein Cre09.g392850 11840.0 5 16.185120523 0.0480728412947 - - - g9432.t1 - - - - - - - - - Cre07.g347980 11897.0 5 16.2630387553 0.0484837343627 - - - g8097.t2, g8097.t1 PF03109 PTHR10566,PTHR10566:SF10, PTHR10566 KOG1235 - K08869 - AT5G24810.1, AT4G24810.2 - ABC1 family protein, Protein kinase superfamily protein Cre01.g009300 11944.0 5 16.3272871222 0.0489471225514 - - - g234.t1 PF02383,PF00397 PTHR11200:SF41,PTHR11200 - - - GO:0042578,GO:0005515 AT3G59770.3 SAC9 sacI homology domain-containing protein / WW domain-containing protein Cre03.g187400 12002.0 5 16.406572341 0.0495894361018 - - - g3882.t1,Cre03.g187400.t1.1 - - - - - - - - - Cre15.g641150 23018.0 6 31.4652959628 9.43360027441e-06 - - - g15457.t1 - - - - - - - - - Cre16.g676981 20933.0 6 28.6151290464 7.320665757e-05 - - - g16744.t1,Cre01.g067000.t1.1 - - - - - - AT3G16000.1 MFP1 MAR binding filament-like protein 1 Cre17.g697150 17361.0 6 23.7322531588 0.00180596875146 - - - g16907.t1,Cre17.g697150.t1.1 - - KOG3227 - - - AT4G13750.1 NOV Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein Cre01.g003500 15592.0 6 21.3140539861 0.00798612823354 MSH2 - - g83.t1,Cre01.g003500.t1.1 - - - - - - AT5G54440.1 AtTRS130,CLUB CLUB Cre05.g241634 15459.0 6 21.1322447775 0.0101450738086 - Histone H2A variant - g5329.t1,Cre24.g770550.t1.1,HAV2 PF00125 PTHR23430 KOG1756 - - GO:0003677 AT1G08880.1 G-H2AX,GAMMA-H2AX,H2AXA,HTA5 Histone superfamily protein Cre06.g290500 14775.0 6 20.1972259905 0.0148937243736 - - - g6738.t1 PF00069,PF02985,PF00400 PTHR17583 KOG1240 2.7.11.1 K08333 GO:0004672,GO:0005524,GO:0006468,GO:0005515 AT4G29380.1 - protein kinase family protein / WD-40 repeat family protein Cre13.g575250 14463.0 6 19.770726193 0.0179035407155 - - - g14138.t1 - PTHR10663,PTHR10663:SF5 - - - - AT5G27970.2 - ARM repeat superfamily protein Cre24.g755347 14557.0 6 19.8992229269 0.0180655813149 - DEAH-box RNA helicase DEAH-box RNA helicase involved in post-transcriptional gene silencing (AAG33228), similarity to mRNA splicing factor. Previously annotated as MUT6 g18255.t1,Cre05.g230550.t1.1,Cre05.g230550.t1.2 PF00271,PF07717,PF00270,PF04408 PTHR18934:SF68,PTHR18934 KOG0924 3.6.4.13 K12815 GO:0003676,GO:0004386,GO:0005524,GO:0008026 AT5G13010.1 EMB3011 RNA helicase family protein Cre07.g354650 14111.0 6 19.2895469342 0.0222513794697 - - - g8250.t1,Cre07.g354650.t1.1 - - - - - - - - - Cre12.g507700 13856.0 6 18.9409653689 0.0282525406395 - - - g12404.t1 PF11732,PF11262 PTHR21597 KOG1874 - K12879 - AT1G24706.2 AtTHO2,THO2 THO2 Cre02.g116100 13473.0 6 18.4174095276 0.0345107588863 - - - g2403.t1 - - KOG4462 - - - - - - Cre12.g555001 13731.0 6 18.7700920525 0.0356722445725 - - - g13434.t1,Cre12.g554950.t1.3 - - - - - - - - - Cre13.g566900 13142.0 6 17.964936986 0.040875820216 - - - g13949.t1 PF09103,PF09169 PTHR11289 - - K08775 GO:0000724,GO:0003697,GO:0005634,GO:0006310,GO:0007090 AT5G01630.1 ATBRCA2(V),BRCA2(V),BRCA2B BRCA2-like B Cre16.g691050 13319.0 6 18.2068936019 0.0411804788845 - - - g15664.t1,Cre16.g691050.t1.1 PF08381,PF00415 PTHR22870:SF25,PTHR22870 - - - - AT5G19420.1 - Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain Cre16.g690095 22879.0 7 31.275284835 5.31270483837e-05 - - - g16863.t1,Cre01.g072050.t1.1,Cre01.g072050.t1.2 PF07974 - KOG4726 - - - AT3G57630.1 - exostosin family protein Cre08.g373050 20924.0 7 28.6028261676 0.000259691482166 - - - g8736.t1,BCC3 PF02785,PF08326,PF00364,PF02786,PF00289,PF01039 PTHR18866,PTHR18866:SF6 - 6.3.4.14,6.4.1.2 K11262 GO:0016874,GO:0003989,GO:0005524,GO:0006633,GO:0003824,GO:0008152 AT1G36160.1 ACC1,AT-ACC1,EMB22,GK,PAS3 acetyl-CoA carboxylase 1 Cre11.g468356 20131.0 7 27.5188058488 0.000566888854198 - - - g11752.t1, g11752.t2 PF07926 - KOG4674 - - GO:0005643,GO:0006606 - - - Cre04.g223000 19575.0 7 26.7587613377 0.000962488103208 - - - g4865.t1,HLM9 PF12234 PTHR13950,PTHR13950:SF7 - - - - AT2G46560.1 - transducin family protein / WD-40 repeat family protein Cre16.g684715 17680.5 7 24.1690053554 0.00436242887786 - Dicer-like protein Dicer-like protein presumably involved in posttranscriptional gene silencing/RNA interference g16815.t1,Cre01.g070000.t1.1,DCL2 PF00636,PF03368,PF00271 PTHR11207 KOG4462 - - GO:0003723,GO:0004525,GO:0006396,GO:0016891,GO:0003676,GO:0004386,GO:0005524 AT1G01040.2 ASU1,ATDCL1,CAF,DCL1,EMB60,EMB76,SIN1,SUS1 dicer-like 1 Cre13.g569550 16339.0 7 22.3351929245 0.0134830316105 - - - g14014.t1 PF08016 PTHR11795,PTHR11795:SF103 - - - - AT4G20140.1 GSO1 Leucine-rich repeat transmembrane protein kinase Cre04.g229163 15830.0 7 21.6393967804 0.0157635012535 - - - g5016.t1 PF00169,PF02181 PTHR23213,PTHR23213:SF18 KOG3815 - - GO:0005515 AT5G07740.1 - actin binding Cre10.g451250 15524.0 7 21.221098902 0.0186889040642 - - - g11089.t1 PF00211 PTHR13620 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre09.g388600 14828.0 7 20.2696762767 0.0366769512275 - - - g9528.t1 - - - - - - - - - Cre10.g420800 14484.0 7 19.7994329101 0.0422792071078 FAP46 Flagellar Associated Protein Conserved uncharacterized Flagellar Associated Protein; found in the flagellar proteome [PMID: 15998802] g10414.t1 - - - - - - - - - Cre01.g012450 24417.0 8 33.3777101192 3.46109825781e-05 - - - g309.t1 PF00632,PF06012,PF06025 PTHR11254,PTHR11254:SF124 KOG0940 6.3.2.19 K10592 GO:0005622,GO:0006464,GO:0016881 AT1G55860.2 UPL1 ubiquitin-protein ligase 1 Cre06.g297082 20053.0 8 27.4121808994 0.00175526140451 - - - g6874.t1,Cre57.g791350.t1.1, g6874.t2,Cre57.g791350.t2.1 PF00211 PTHR24420 - 4.6.1.1 K01768 GO:0009190,GO:0016849,GO:0035556 AT5G07280.1 EMS1,EXS Leucine-rich repeat transmembrane protein kinase Cre15.g641650 19597.0 8 26.7888350414 0.00304557742274 - - - g15469.t1,HLM22 - PTHR10887:SF17,PTHR10887 - - - - AT1G05460.1 SDE3 P-loop containing nucleoside triphosphate hydrolases superfamily protein Cre16.g661950 18940.0 8 25.8907248908 0.00466430085867 - - - g15985.t1,Cre16.g661950.t1.1 - - - - - - - - - Cre13.g578100 18684.0 8 25.5407763389 0.00595838520519 - - - g14205.t1 PF11894 - - - - - AT5G51200.1 - Protein of unknown function (DUF3414) Cre10.g465300 18068.0 8 24.698712636 0.00912407738715 - - - g11401.t1 PF00211 PTHR11017,PTHR11017:SF7 - - - GO:0009190,GO:0016849,GO:0035556 - - - Cre17.g742400 16926.0 8 23.137614018 0.0164084021352 - Protein tyrosine kinase Putative protein tyrosine kinase identified through multi-level HMM library for kinase classification (PMID: 17557329) g17955.t1,PTK17 PF00069,PF07714 PTHR23257,PTHR23257:SF319 - - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre03.g144011 16868.0 8 23.0583287992 0.020018928236 - - - g2864.t3,Cre01.g056350.t3.1, g2864.t2,Cre01.g056350.t4.1, g2864.t1,Cre01.g056350.t2.1, g2864.t4,Cre01.g056350.t1.1 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT1G18160.1 - Protein kinase superfamily protein Cre05.g245550 15508.0 8 21.1992271175 0.0421907242556 - Phosphatidylinositol 4-kinase Phosphatidylinositol 4-kinase (PI4K) g5222.t1,PIK1 PF00454,PF00613 PTHR10048,PTHR10048:SF15 - 2.7.1.67 K00888 GO:0004428,GO:0046854,GO:0048015,GO:0016773 AT1G49340.1 ATPI4K ALPHA Phosphatidylinositol 3- and 4-kinase family protein Cre02.g142166 15617.0 8 21.3482286494 0.0427693584957 - - - g2756.t1,Cre15.g646200.t2.1, g2756.t2,Cre15.g646200.t1.1 - PTHR10919:SF179,PTHR10919 - - - - - - - Cre12.g483500 28003.0 9 38.2797238182 4.26927812178e-06 - - - g12002.t1 PF06101 PTHR16166,PTHR16166:SF68 - - - - AT4G17140.3 - pleckstrin homology (PH) domain-containing protein Cre02.g088750 26281.0 9 35.9257730124 2.3536867696e-05 - - - g1654.t1,Cre02.g088750.t1.1,ATR2 PF02260,PF02259,PF00454 PTHR11139,PTHR11139:SF1 KOG0889 - K08874 GO:0005515,GO:0016773 AT4G36080.2 - phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases Cre16.g672200 21184.0 9 28.9582426656 0.00188753476774 - - - g16683.t1 - - - - - - - - - Cre03.g179961 16522.0 9 22.5853514596 0.0419646781895 - - - g3729.t1 PF03104,PF08490 PTHR10670 KOG1798 2.7.7.7 K02324 GO:0003887,GO:0006260,GO:0005634,GO:0008270 AT1G08260.1 ABO4,EMB142,EMB2284,EMB529,ESD7,POL2A,TIL1 DNA polymerase epsilon catalytic subunit Cre05.g243150 16556.0 9 22.6318290017 0.0420022814512 - - - g5283.t1 PF00484,PF04357 - - 4.2.1.1 K01673 GO:0004089,GO:0008270,GO:0015976 AT2G25660.1 emb2410 embryo defective 2410 Cre01.g001300 26216.0 10 35.8369188879 7.97407427824e-05 - - - g29.t1 - - - - - - - - - Cre13.g607650 21105.0 10 28.8502507296 0.00507500383145 - - - g14649.t1 - PTHR10891 KOG0027 - - - AT4G35310.1 ATCPK5,CPK5 calmodulin-domain protein kinase 5 Cre02.g118700 19695.0 10 26.9227997214 0.0140563737091 - - - g2463.t1 - - - - - - - - - Cre06.g250300 18771.0 11 25.6597041671 0.0410222528385 DHC1B Cytoplasmic dynein 1b heavy chain (not an inner arm dynein) Homologue of mammalian cytoplasmic dynein 2 heavy chain. Motor for retrograde intraflagellar transport. Not an inner arm dynein. Upregulated upon deflagellation by nearly 8-fold. Previously annotated as DHC1b g5606.t1,Cre06.g250300.t1.1,DHC1b,FLA24 PF08385,PF08393,PF07728,PF03028 PTHR10676,PTHR10676:SF34 KOG3595 - K10414 GO:0005524,GO:0016887,GO:0003777,GO:0007018,GO:0030286 - - - Cre17.g702850 27483.0 12 37.5688908222 0.000203252353457 - Voltage-gated Ca2+ channel, alpha subunit Voltage-dependent 4-domain calcium channel, alpha subunit; may exhibit altered ion selectivity as conserved P-loop loci differ from mammalian Ca2+ channels (PMID: 8968582) g17038.t1,CAV5 PF00520 PTHR10037:SF138,PTHR10037 KOG2301 - - GO:0005216,GO:0006811,GO:0016020,GO:0055085 AT4G03560.1 ATCCH1,ATTPC1,FOU2,TPC1 two-pore channel 1 Cre14.g608150 20859.0 13 28.5139720431 0.0398142084391 - - - g14660.t1 - PTHR25719:SF5,PTHR25719 - - - - AT4G13750.1 NOV Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein Cre11.g477450 22743.0 15 31.0893746669 0.0424332025958 - - - g11855.t1 PF00069 PTHR23257 - - - GO:0004672,GO:0005524,GO:0006468 AT3G63260.1 ATMRK1 Protein kinase superfamily protein Cre13.g564350 24602.0 16 33.6306026274 0.0304209729972 - - - g13884.t1,Cre13.g564350.t1.1, g13884.t2 PF02260,PF00454 PTHR11139:SF3,PTHR11139 - 2.7.11.1 K04728 GO:0004674,GO:0005515,GO:0016773, GO:0005515,GO:0004674,GO:0016773 AT3G48190.1 ATATM,ATM ataxia-telangiectasia mutated Cre06.g309800 28284.0 20 38.6638470333 0.035344038385 - Predicted protein Identified by comparative genomics as being present only in organisms having motile (MOT) cilia g7168.t1,MOT2 - - - - - - - - - Cre02.g100950 33732.0 23 46.1111896523 0.0101450738086 - - - g2060.t1 PF00023 - - - - GO:0005515 - - - Cre09.g397327 36307.0 27 49.6311799688 0.0203631672728 - ATM/ATR-related hosphatidylinositol 3-kinase ATM/ATR-related hosphatidylinositol 3-kinase. May be DNA-PKcs, catalytic subunit of a nuclear DNA-dependent serine/threonine protein kinase (DNA-PK). The second component is the autoimmune antigen Ku. On its own, the catalytic subunit of DNA-PK is inacti g9861.t1,Cre02.g134200.t1.1 PF02260,PF00454 PTHR11139:SF8,PTHR11139 - - - GO:0005515,GO:0016773 AT1G50030.1 TOR target of rapamycin Cre09.g400850 40986.0 31 56.0273099458 0.0140563737091 - Putative polycystin cation channel Putative polycystin cation channel. Contains C-type lectin domain responsible for carbohydrate binding activity (PMID: 16336259) g9250.t1,CTL4 PF08016,PF01822,PF09458 - KOG4462 - - GO:0005529,GO:0007155 AT3G19020.1 - Leucine-rich repeat (LRR) family protein Cre10.g449750 75699.0 32 103.479513385 1.85073249354e-13 - - - g11056.t1,PKS1 PF00501,PF00109,PF02801,PF08659,PF00107,PF00550 PTHR11712,PTHR11712:SF58 KOG1176 - - GO:0003824,GO:0008152,GO:0009058,GO:0008270,GO:0016491,GO:0055114,GO:0048037 AT3G16910.1 AAE7,ACN1 acyl-activating enzyme 7 Cre10.g451600 58047.0 47 79.3494671454 0.00596843616195 - - - g11096.t1, g11096.t3, g11096.t2 PF00704,PF00059, PF00059 PTHR11177:SF44,PTHR11177 KOG2806, KOG4462 - - GO:0004553,GO:0005975,GO:0005488, GO:0005488 AT4G19800.1 - Glycosyl hydrolase family protein with chitinase insertion domain