run("Duplicate...", "title=2-17-C-1.tif");
run("Split Channels");
selectWindow("2-17-C-1.tif (red)");
run("Set Measurements...", "area mean modal min perimeter display add redirect=[2-17-C-1.tif (red)] decimal=3");
//run("Threshold...");
setAutoThreshold("MaxEntropy dark");
run("Analyze Particles...", "size=500-100000 display add");
roiManager("Show All with labels");
roiManager("Show All");
roiManager("Combine");
setBackgroundColor(0, 0, 0);
run("Clear Outside");
selectWindow("2-17-C-1.tif (blue)");
roiManager("Combine");
run("Clear Outside");
selectWindow("2-17-C-1.tif (green)");
roiManager("Combine");
run("Clear Outside");
roiManager("Combine");
roiManager("Delete");
roiManager("Show None");
selectWindow("2-17-C-1.tif (green)");
setAutoThreshold("Minimum"); 
roiManager("Show All with labels");
roiManager("Show All");
run("Analyze Particles...", "size=1-100000 display add");
roiManager("Combine");
setForegroundColor(0, 0, 0);
run("Fill", "slice");
selectWindow("2-17-C-1.tif (blue)");
roiManager("Combine");
run("Fill", "slice");
selectWindow("2-17-C-1.tif (red)");
roiManager("Combine");
run("Fill", "slice");
roiManager("Combine");
roiManager("Delete");
selectWindow("2-17-C-1.tif (green)");
roiManager("Show None");
run("Set Measurements...", "area mean modal min perimeter display add redirect=[2-17-C-1.tif (green)] decimal=3");
setThreshold(1, 255);
roiManager("Show All with labels");
roiManager("Show All");
run("Analyze Particles...", "size=500-100000 show=Outlines display add");
selectWindow("2-17-C-1.tif (red)");
roiManager("Show None");
run("Set Measurements...", "area mean modal min perimeter display add redirect=[2-17-C-1.tif (red)] decimal=3");
setThreshold(1, 255);
roiManager("Show All with labels");
roiManager("Show All");
run("Analyze Particles...", "size=500-100000 display add");
selectWindow("2-17-C-1.tif (blue)");
roiManager("Show None");
run("Set Measurements...", "area mean modal min perimeter display add redirect=[2-17-C-1.tif (blue)] decimal=3");
setThreshold(1, 255);
roiManager("Show All with labels");
roiManager("Show All");
run("Analyze Particles...", "size=500-100000 display add");
roiManager("Combine");
roiManager("Delete");
selectWindow("2-17-C-1.tif (green)");
close();
selectWindow("2-17-C-1.tif (blue)");
close();
selectWindow("2-17-C-1.tif (red)");
close();