Sheet 1: F gene Genbank accession numbers,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,, 1,KC210091,KF192729,KT371657,KT371628,JQ041681,LC337733,LC337760,KT807500,KJ627387,JQ745076,KY474540,FJ641077,MF104576,KT371622,HQ456623,LC337750,AB693956,KJ627391,KT032166,JQ745093,KF192760 2,KC210085,KF192736,KT371660,KT371638,HQ456607,LC337734,LC337761,KT807505,KJ627406,JQ745077,KY474534,FJ641078,MF104578,KT371625,HQ456629,LC337751,AB618756,KJ627431,KT032163,JQ745094,KF192761 3,HM124491,KF192737,KT371664,KT371650,HQ456608,LC337735,LC337762,KT807507,KJ627433,JQ745078,MF045424,FJ641081,KT371646,KT371630,HQ456632,LC337752,AB618757,KJ627435,KF516922,JQ745068,KF192762 4,MG431250,KF192739,KT371665,KT371655,HQ456609,LC337736,LC337763,KT807499,KT032159,JQ745079,KY474532,FJ641083,KU375616,KT371631,HQ456634,LC337753,AB618758,KJ627386,JQ181560,JQ745052,KF192723 5,HM124511,KF192740,KT371667,KT371661,HQ456610,LC337737,LC337764,KT807512,KT032162,JQ745080,KY474535,FJ641084,KT371671,KU375610,HQ456635,LC337754,AB618759,KJ627392,JQ181561,KM361520,KF192726 6,HM124512,KF192741,KT371669,KT371662,HQ456611,LC337738,LC337765,KT807508,KT032165,JQ745081,KY474536,FJ641085,KT371672,KU375611,HQ456636,LC337755,AB618760,KJ627404,JQ181562,KJ131441,KF192728 7,KF192769,KF192744,KT371670,KT371663,HQ456612,LC337739,LC337766,KT807510,KT032167,JQ745082,KY474539,FJ641086,KT371673,KT371654,HQ456638,LC337702,AB618761,KJ627426,JQ181563,KJ131442,KJ152609 8,KF192770,KF192750,KU375614,KT371666,HQ456613,LC337740,LC337767,KT807501,KT032169,JQ745083,KY474541,FJ641087,KU375619,KT371658,HQ456640,LC337703,AB618762,KJ627434,JQ181564,KJ131444,KJ152614 9,KF192773,KF192763,KU375615,KU375623,HQ456617,LC337741,LC337699,KT807502,KT032170,JQ745084,KY474542,FJ641088,KU375620,KT371659,HQ456616,LC337704,AB618763,KJ627379,JQ181565,KJ131445,KF192754 10,KF192774,KF192743,KU375592,KU375624,HQ456625,LC337742,LC337700,KT807503,KT032171,JQ745085,KY474543,FJ641089,KT371674,KT371668,HQ456615,LC337705,AB618764,KJ627393,JQ181566,KJ131446,KF192755 11,KF192775,KF192759,KX497050,KT371610,HQ456628,LC337743,LC337701,KT807504,KT032157,JQ745086,KY474544,FJ641090,KT371675,KU375617,HQ456618,LC337706,AB618765,KJ627402,JQ181567,KJ131447,KF192756 12,KF192776,KF729943,KX497057,KT371611,HQ456633,LC337744,LC337768,MF166864,KT032158,JQ745087,KY474545,FJ641091,KT371676,KU375618,HQ456624,LC337707,AB618766,KJ627403,JQ181568,KJ131450,KJ152616 13,KF192777,FJ641076,KX497063,KT371614,HQ456614,LC337745,LC337769,KJ627432,KT032160,JQ745088,KY474529,FJ641092,KT371677,KT371678,HQ456626,LC337708,AB618767,KJ627409,JQ181569,KJ131453,KJ131434 14,KF192778,FJ641079,KX497064,KT371615,HQ456619,LC337746,AB618749,KJ627397,KT032161,JQ745089,KY474530,FJ641093,KT371680,KT371679,HQ456627,LC337709,AB618768,KJ627410,JQ181570,KJ131454,KF192758 15,KF192779,FJ641080,MF104558,KT371617,HQ456620,LC337747,AB618750,KJ627400,KT032164,JQ745090,KF192782,FJ641094,KU375589,KU375590,HQ456630,LC337710,AB618769,KJ627412,JQ181571,KJ131455, 16,KF192780,FJ641082,MF104559,KT371620,HQ456621,LC337748,AB618751,KJ627414,KT032168,JQ745091,KF192783,FJ641095,KU375621,KX497048,HQ456631,LC337711,AB618770,KJ627420,JQ181572,KJ131456, 17,KF192781,FJ641074,MF104562,KT371621,HQ456622,LC337749,AB693954,KJ627383,KT032172,JQ745092,KF192784,FJ641096,KX497049,KX497051,HQ456637,LC337712,AB618771,KJ627422,JQ181573,KJ152608, 18,KF192772,FJ641097,KX497053,KX497055,HQ456639,LC337713,AB618772,KJ627424,JQ181574,KJ152610,KF192785,KT371641,KX497054,JQ041684,KC731526,LC337758,AB693955,KJ627395,JQ745061,KJ131431, 19,KF192793,FJ641098,KX497059,KX497056,KC731509,LC337714,AB618773,KJ627430,JQ181575,KJ152612,KF192786,KT371642,KX497058,JQ041685,KC731527,LC337687,AB693957,KJ627398,JQ745062,KJ131432, 20,KF192794,FJ641099,KX497060,KX497061,KC731511,LC337669,AB618774,KJ627436,JQ181576,KJ152613,KF192787,KT371643,KX497062,JQ041686,LC337721,LC337688,AB693958,KJ627407,JQ745063,KJ131433, 21,KF192796,FJ641100,MF104560,MF104585,KC731518,LC337670,AB618775,KJ627377,JQ181577,KJ152615,KF192788,KU375612,KX497065,JQ041687,LC337722,LC337689,JQ888113,KJ627415,JQ745064,KJ131435, 22,KF192797,FJ641101,MF104561,MF104564,KC731521,LC337671,AB618776,KJ627380,JQ181578,KJ152617,KF192789,KU375613,MF104583,JQ041688,LC337723,LC337690,JQ888114,KJ627416,JQ745065,KJ131436, 23,KF192801,FJ641102,MF104563,MF104566,KJ635573,LC337672,AB618777,KJ627381,JQ181579,KJ152618,KF192790,KT371644,MF104584,JQ041689,LC337724,LC337691,JQ888115,KJ627418,JQ745066,KJ131437, 24,KF192724,FJ641103,MF104565,MF104567,KJ635575,LC337673,AB618778,KJ627384,JQ181580,KJ152619,KF192791,KT371645,MF104586,JQ041690,LC337725,LC337692,JQ888116,KJ627419,JQ745067,KJ131438, 25,KF192725,FJ641104,MF104579,MF104569,KC731516,LC337674,AB618779,KJ627389,JQ181581,KJ152620,KF192792,KT371647,MF104568,JQ041691,LC337726,LC337693,JQ888117,KJ627421,JQ745069,KJ131439, 26,KF192727,FJ641105,MF104580,MF104570,KC731519,LC337675,AB693959,KJ627396,JQ181582,KJ152621,KF192795,KT371648,MF104572,JQ041692,LC337727,LC337694,JQ888118,KJ627425,JQ745070,KJ131448, 27,KF192730,FJ641106,MF104581,MF104571,KC731522,LC337676,AB693960,KJ627399,JQ181583,KJ152622,KF192798,KT371649,MF104573,JQ041693,LC337728,LC337695,KT807509,KJ627413,JQ745071,KJ152611, 28,KF192731,FJ641107,MF104587,MF104575,KC731523,LC337677,AB618741,KJ627405,JQ181584,KJ152623,KF192799,KT371651,MF104574,JQ041694,LC337729,LC337696,KT807511,KJ627423,JQ745072,KY967366, 29,KF192732,FJ641108,KT371612,MF104577,HQ599221,LC337678,AB618742,KJ627408,JQ745049,KJ152624,KF192800,KT371652,KT371616,JQ041695,LC337730,LC337697,KT807514,KJ627427,JQ745073,MF045425, 30,KF192733,FJ641075,KT371613,MF104582,HQ599225,LC337679,AB618743,KJ627411,JQ745050,KJ131440,KF192802,KT371653,KT371626,JQ041676,LC337731,LC337698,KT807517,KJ627428,JQ745074,KY474537, 31,KF192734,KU821121,KT371619,HQ909765,HQ599226,LC337680,AB618744,KJ627417,JQ745051,KJ131443,KF192803,KT371656,KT371627,JQ041679,LC337732,LC337759,KT807518,KJ627385,JQ745075,KY474538, 32,KF192735,KT371618,KT371623,HQ909766,HQ599227,LC337681,AB618745,KJ627382,JQ745053,KJ131449,KF192751,KF192745,KT371634,KT371639,JQ041677,KJ635574,LC337684,AB618748,KJ627437,JQ745056, 33,KF192738,KT371632,KT371624,JQ041674,KC731510,LC337682,AB618746,KJ627401,JQ745054,KJ131451,KF192752,KF192746,KT371635,KU375609,JQ041678,HQ599224,LC337685,AB618752,KJ627390,JQ745057, 34,KF192742,KT371633,KT371629,JQ041675,KC731525,LC337683,AB618747,KJ627429,JQ745055,KJ131452,KF192753,KF192747,KT371636,KU375622,JQ041680,KC731508,LC337686,AB618753,KJ627378,JQ745058, 35,KF192748,KT371637,KU375591,JQ041682,KC731514,LC337756,AB618754,KJ627388,JQ745059,KJ131430,KF192757,KF192749,KT371640,KX497052,JQ041683,KC731515,LC337757,AB618755,KJ627394,JQ745060, ,,,,,,,,,,,,,,,,,,,,, Sheet 1: G gene Genbank accession numbers,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,, 1,GQ888743,KF178973,KJ627378,KU320893,KU320963,KX829106,LC192176,LC192246,KF179012,KJ627412,KU320927,KX829070,KX829140,LC192210,KC731527,HQ864251,KF178996,KJ627401,KU320916,KU375606,KX829129 2,HM197719,KF178974,KJ627379,KU320894,KU320964,KX829107,LC192177,LC192247,KF179013,KJ627413,KU320928,KX829071,KX829141,LC192211,KF178964,HQ864252,KF178997,KJ627402,KU320917,KU375607,KX829130 3,HQ864230,KF178975,KJ627380,KU320895,KU320965,KX829108,LC192178,LC192248,KF179014,KJ627414,KU320929,KX829072,KX829142,LC192212,KF178965,HQ864253,KF178998,KJ627403,KU320918,KU375608,KX829131 4,HQ864231,KF178976,KJ627381,KU320896,KU320966,KX829109,LC192179,LC192249,KF179015,KJ627415,KU320930,KX829073,KX829143,LC192213,KF178966,HQ864254,KF179004,KJ627404,KU320919,KX829062,KX829132 5,HQ864232,KF178977,KJ627382,KU320897,KU320967,KX829110,LC192180,LC192250,KF179016,KJ627416,KU320931,KX829074,KX829144,LC192214,KF178967,HQ864255,KF179005,KJ627405,KU320920,KX829063,KX829133 6,HQ864233,KF178978,KJ627383,KU320898,KU320968,KX829111,LC192181,LC192251,KF179017,KJ627417,KU320932,KX829075,KX829145,LC192215,KF178968,HQ864256,KF179006,KJ627406,KU320921,KX829064,KX829134 7,HQ864234,KF178979,KJ627384,KU320899,KU320969,KX829112,LC192182,LC192252,KF179018,KJ627418,KU320933,KX829076,KX829146,LC192216,KF178969,HQ864257,KF179007,KJ627407,KU320922,KX829065,KX829135 8,HQ864235,KF178980,KJ627385,KU320900,KU320970,KX829113,LC192183,LC192253,KF179019,KJ627419,KU320934,KX829077,KX829147,LC192217,KF178970,HQ864258,KF179008,KJ627408,KU320923,KX829066,KX829136 9,HQ864236,KF178981,KJ627386,KU320901,KU320971,KX829114,LC192184,MF045424,KF179020,KJ627420,KU320935,KX829078,KX829148,LC192218,KF178971,HQ864259,KF179009,KJ627409,KU320924,KX829067,KX829137 10,HQ864237,KF178982,KJ627387,KU320902,KU320972,KX829115,LC192185,MF045425,KF179021,KJ627421,KU320936,KX829079,KX829149,LC192219,KF178972,HQ864260,KF179010,KJ627410,KU320925,KX829068,KX829138 11,HQ864238,KF178983,KJ627388,KU320903,KU320973,KX829116,LC192186,JX082178,KF179022,KJ627422,KU320937,KX829080,KX829150,LC192220,KC731523,JQ689392,KF179011,KJ627411,KU320926,KX829069,KX829139 12,HQ864239,KF178984,KJ627389,KU320904,KU375593,KX829117,LC192187,KC709791,KF179023,KJ627423,KU320938,KX829081,KX829151,LC192221,KC731524,LC192199,KC731505,KF179035,KJ627435,KU320950,KX829093 13,HQ864240,KF178985,KJ627390,KU320905,KU375594,KX829118,LC192188,KC709792,KF179024,KJ627424,KU320939,KX829082,KX829152,LC192222,KF516922,LC192200,KC731506,KF179036,KJ627436,KU320951,KX829094 14,HQ864241,KF178986,KJ627391,KU320906,KU375595,KX829119,LC192189,KC731486,KF179025,KJ627425,KU320940,KX829083,KX829153,LC192223,KJ627377,LC192201,KC731508,KF179037,KJ627437,KU320952,KX829095 15,HQ864242,KF178987,KJ627392,KU320907,KU375596,KX829120,LC192190,KC731487,KF179026,KJ627426,KU320941,KX829084,KX829154,LC192224,KU176105,LC192202,KC731509,KF179038,KM361520,KU320953,KX829096 16,HQ864243,KF178988,KJ627393,KU320908,KU375597,KX829121,LC192191,KC731489,KF179027,KJ627427,KU320942,KX829085,KX829155,LC192225,KU176106,LC192203,KC731511,KF179039,KR138311,KU320954,KX829097 17,HQ864244,KF178989,KJ627394,KU320909,KU375598,KX829122,LC192192,KC731490,KF179028,KJ627428,KU320943,KX829086,KX829156,LC192226,KU320961,LC192204,KC731513,KF179040,KR138312,KU320955,KX829098 18,HQ864245,KF178990,KJ627395,KU320910,KU375599,KX829123,LC192193,KC731491,KF179029,KJ627429,KU320944,KX829087,KX829157,LC192227,KU320962,LC192205,KC731515,KF179041,KU176100,KU320956,KX829099 19,HQ864246,KF178991,KJ627396,KU320911,KU375600,KX829124,LC192194,KC731492,KF179030,KJ627430,KU320945,KX829088,KX829158,LC192228,KX829104,LC192206,KC731518,KF179042,KU176101,KU320957,KX829100 20,HQ864247,KF178992,KJ627397,KU320912,KU375601,KX829125,LC192195,KC731494,KF179031,KJ627431,KU320946,KX829089,KX829159,LC192229,KX829105,LC192207,KC731519,KF179043,KU176102,KU320958,KX829101 21,HQ864248,KF178993,KJ627398,KU320913,KU375602,KX829126,LC192196,KC731497,KF179032,KJ627432,KU320947,KX829090,KX829160,LC192230,LC192174,LC192208,KC731521,KF179044,KU176103,KU320959, 22,HQ864249,KF178994,KJ627399,KU320914,KU375603,KX829127,LC192197,KC731498,KF179033,KJ627433,KU320948,KX829091,KX829161,LC192231,LC192175,LC192209,KC731522,KF179045,KU176104,KU320960, 23,HQ864250,KF178995,KJ627400,KU320915,KU375605,KX829128,LC192198,KC731500,KF179034,KJ627434,KU320949,KX829092,KX829162,LC192232,LC192241,LC192242,LC192243,KX829163,KX829164,KX829165, 24,KX829167,KX829168,KX829169,KY967366,LC192171,LC192172,LC192173,LC192244,LC192245,LC192233,LC192234,LC192235,LC192236,LC192237,LC192238,LC192239,LC192240,KX829166,KX829103,KX829102, ,,,,,,,,,,,,,,,,,,,,, Sheet 1: Kilifi F and G gene Genbank accession numbers (excluded sequences).,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,, 1,MH482617,MH482624,MH482644,MH482705,MH482710,MH482731,MH482743,,,,,,,,,,,,,, 2,MH482618,MH482635,MH482646,MH482706,MH482715,MH482733,,,,,,,,,,,,,,, 3,MH482619,MH482639,MH482649,MH482707,MH482720,MH482735,,,,,,,,,,,,,,, 4,MH482620,MH482640,MH482653,MH482708,MH482728,MH482736,,,,,,,,,,,,,,, 5,MH482621,MH482642,MH482654,MH482709,MH482729,MH482742,,,,,,,,,,,,,,,