SnpEff: Variant analysis

Contents
Summary
Variant rate by chromosome
Variants by type
Number of variants by impact
Number of variants by functional class
Number of variants by effect
Quality histogram
InDel length histogram
Base variant table
Transition vs transversions (ts/tv)
Allele frequency
Allele Count
Codon change table
Amino acid change table
Chromosome variants plots
Details by gene
Summary

Genome musa_acuminata_v2
Date 2019-06-29 17:42
SnpEff version 
SnpEff 4.3t (build 2017-11-24 10:18), by Pablo Cingolani
Command line arguments 
SnpEff  musa_acuminata_v2 /homes/nyine/GWAS/AllMerged_NoB_GWAS_for_snpeff.vcf
Warnings 12,832
Errors 0
Number of lines (input file) 27,178
Number of variants (before filter) 27,178
Number of not variants
(i.e. reference equals alternative) 		0
Number of variants processed
(i.e. after filter and non-variants) 		27,178
Number of known variants
(i.e. non-empty ID) 		27,178 ( 100% )
Number of multi-allelic VCF entries
(i.e. more than two alleles) 		0
Number of effects 84,057
Genome total length 450,848,473
Genome effective length 443,630,233
Variant rate 1 variant every 16,323 bases

Variants rate details

Chromosome Length Variants Variants rate
1 29,070,452 2,001 14,527
2 29,511,734 1,638 18,016
3 35,020,413 2,608 13,428
4 37,105,743 2,946 12,595
5 41,853,232 2,362 17,719
6 37,593,364 3,230 11,638
7 35,028,021 2,443 14,338
8 44,889,171 2,567 17,487
9 41,306,725 2,430 16,998
10 37,674,811 2,396 15,724
11 27,954,350 2,101 13,305
Un_random 46,622,217 456 102,241
Total 443,630,233 27,178 16,323

Number variants by type

Type Total
SNP 27,178
MNP 0
INS 0
DEL 0
MIXED 0
INV 0
DUP 0
BND 0
INTERVAL 0
Total 27,178

Number of effects by impact

Type (alphabetical order)   Count Percent
HIGH   209 0.249%
LOW   6,434 7.654%
MODERATE   6,437 7.658%
MODIFIER   70,977 84.439%

Number of effects by functional class

Type (alphabetical order)   Count Percent
MISSENSE   6,488 53.373%
NONSENSE   106 0.872%
SILENT   5,562 45.755%

Missense / Silent ratio: 1.1665

Number of effects by type and region

Type Region
Type (alphabetical order)   Count Percent
3_prime_UTR_variant   1,956 2.307%
5_prime_UTR_premature_start_codon_gain_variant   122 0.144%
5_prime_UTR_variant   861 1.015%
downstream_gene_variant   25,954 30.605%
intergenic_region   8,195 9.664%
intron_variant   12,354 14.568%
missense_variant   6,437 7.591%
splice_acceptor_variant   34 0.04%
splice_donor_variant   18 0.021%
splice_region_variant   717 0.845%
stop_gained   106 0.125%
stop_lost   51 0.06%
stop_retained_variant   17 0.02%
synonymous_variant   5,760 6.792%
upstream_gene_variant   22,220 26.202%

Type (alphabetical order)   Count Percent
DOWNSTREAM   25,954 30.877%
EXON   12,297 14.629%
INTERGENIC   8,195 9.749%
INTRON   11,791 14.027%
SPLICE_SITE_ACCEPTOR   34 0.04%
SPLICE_SITE_DONOR   18 0.021%
SPLICE_SITE_REGION   609 0.725%
UPSTREAM   22,220 26.434%
UTR_3_PRIME   1,956 2.327%
UTR_5_PRIME   983 1.169%

Quality:
Insertions and deletions length:
Base changes (SNPs)

  A C G T
A 0 1,187 3,444 1,723
C 1,633 0 1,359 4,364
G 4,287 1,304 0 1,670
T 1,619 3,381 1,207 0

Ts/Tv (transitions / transversions)

Note: Only SNPs are used for this statistic.
Note: This Ts/Tv ratio is a 'raw' ratio (ratio of observed events).

Transitions 2,937,701
Transversions 2,144,917
Ts/Tv ratio 1.3696

All variants: 

Sample ,1201K_1,12419S_13,12468S_18,12468S_6,12477S_13,12479S_1,12479S_13,12618S_1,12949S_2,13284S_1,13522S_5,13573S_1,1438K_1,14539S_4,16191S_6,16242S_1,16285S_13,16285S_3,16285S_6,16285S_8,16457S_2,17503S_3,1968_2,19798S_2,21086S_1,2180K_6,222K_1,22598S_2,24410S_2,24434S_3,24583S_2,24797S_7,24928S_21,24928S_22,24948S_10,24948S_12,24948S_13,24948S_2,24948S_24,24948S_27,24948S_29,24948S_9,25031S_1,25031S_15,25031S_16,25031S_17,25031S_19,25031S_27,25031S_33,25031S_34,25031S_7,25066S_1,25066S_2,25089S_4,25102S_1,25117S_1,25117S_2,25117S_3,25328S_3,25356S_1,25371S_2,25435S_11,25435S_4,25457S_1,25474S_1,25474S_5,25499S_7,25508S_1,25583S_2,25623S_11,25628S_11,25653S_3,25680S_11,25680S_13,25737S_1,25909S_3,25974S_11,25974S_13,25974S_15,25974S_17,25974S_18,25974S_19,25974S_21,25974S_30,25974S_31,25974S_35,25974S_X,26039S_2,26060S_1,26075S_6,26075S_7,26075S_8,26224S_2,26224S_3,26260S_3,26288S_4,26315S_1,26315S_3,26316S_14,26316S_7,26317S_1,26337S_11A,26337S_11B,26337S_2,26337S_22A,26337S_22B,26337S_28,26337S_32,26337S_34,26337S_37,26337S_39,26337S_40,26337S_43,26363S_1,26369S_4,26369S_8,26466S_2,26466S_5,26530S_1,26540S_182,26660S_1,26666S_1,26709S_1,26725S_1,26815S_3,26815S_8,26815S_9,26820S_1,26840S_10,26840S_5,26840S_7,26840S_9,26874S_5,26975S_1,26975S_2,26990S_10,26990S_11,26990S_4,26998S_1,27073S_1,27074S_1,27184S_4,27184S_6,27184S_8,27261S_1,27261S_10,27261S_11,27262S_1,27262S_3,27264S_2,27334S_5,27346S_2,27346S_4,27401S_1,27437S_1,27494S_12,27494S_4,27494S_5,27524S_12A,27524S_12B,27524S_22,27524S_30,27528S_1,27579S_1,27579S_3,27684S_5,27713S_1,27744S_1,27770S_20,27770S_4,27825S_4,27833S_10,27833S_13,278732_12,27873S_14,27873S_17,27873S_18,27873S_26,27873S_3,27873S_33,27873S_37,27873S_38,27873S_4,27873S_5,27873S_7,27885S_1,27885S_9,27886S_5,27914S_1,27914S_11,27914S_13,27914S_18,27914S_21,27914S_22,27914S_24,27914S_26,27914S_3,27914S_6,27914S_7,27914S_8,279155_2,27915S_3,27935S_7,27960S_1,28030S_2,28030S_6,28033S_14,28033S_15,28033S_18,28033S_23,28033S_3,28033S_9,28036S_11,28036S_2,28060S_8,28068S_9,28071S_1,28073S_1,28077S_5,28095S_1,28164S_15,28164S_3,28165S_1,28188S_2,28200S_3,28246S_4,28246S_7,28256S_1,28257S_1,28257S_2,28257S_4,28260S_2,28263S_2,28432S_19,28432S_20,28432S_3,28434S_9,28452S_11,28465S_2,28465S_21,28476S_7,28476S_8,28479S_2,28481S_1,28492S_1,28506S_1,28528S_1,28561S_2,28561S_5,28780S_1,28974S_11,28974S_15,28974S_22,28974S_29,29114S_14A,29114S_14B,29114S_19,29114S_24,29165S_5,29275S_1,29285S_20,29364S_2,29586S_4,29636S_1,29725S_4,29725S_5,365K_1,376K_7,401K_1,5610S_1,660K_1,7197_2,7798S_2,8075_7,8386S_19,861S_1,9128_3,917K_2,9187S_8,9494S_10,9750S_13,C_V_rose,Calcutta_4,Entukura,Enyeru,Enzirabahima,HB,HJ,HX,Kabucuragye,Kazirakwe,Kokopo,Long_Tavoy,Malaccensis,Nakasabira,Nakawere,Nakayonga,Namwezi,Nante,Nfuuka,P_lilin,SH3142,SH3217,SH3362,Tereza,Total
Transitions ,10468,9559,9570,9864,9832,10616,10542,10123,10132,10248,9577,9578,10642,9909,10119,9629,10388,10302,10219,10237,10481,10044,9862,10045,9418,10206,10853,9570,9168,9782,9781,10248,10503,9990,9366,10375,9619,10435,10260,10854,9408,10209,9934,9391,9887,10302,10347,10309,9784,9867,10131,9922,9693,9775,10191,9654,10203,9942,9918,10257,9744,9639,9529,10365,10156,10785,9835,9372,10021,10315,10341,9865,9495,10214,9963,10335,9006,9716,9311,9643,8910,10242,10045,9579,9680,9526,9541,10719,9624,9928,10238,9928,9185,9660,10531,9104,10050,9836,10122,8861,10089,9339,9691,9176,9536,9746,10030,10106,9262,9094,9775,9449,9706,8752,10397,10242,7445,10228,9618,9347,10151,9129,10963,9927,10543,10240,9410,10502,9382,9937,9656,9828,9448,9297,9300,10108,9765,7588,8751,9368,8611,9141,9107,9498,9811,9389,9480,9950,9891,9220,9570,9173,9190,8792,9450,9527,9032,10142,9152,8863,9062,9195,9065,8677,8731,10078,9146,9228,9791,9706,9103,9414,9220,8988,9049,9153,9235,9242,8949,9071,8941,8947,9649,9489,9071,9277,9128,9171,9409,9140,9303,9279,9708,9645,9519,9366,9860,9636,8996,9461,8301,9763,9044,9179,8985,8935,9228,9015,9003,9463,9176,9046,9766,9338,9075,9328,9032,9603,9714,9465,10145,9392,9915,9565,8794,9245,9836,9430,9083,8958,9417,10116,9930,9381,9370,9132,9709,8962,9136,9028,10046,9774,9103,9292,8786,8930,10032,9089,9266,9423,9231,9192,9364,9280,8849,7776,8644,8672,9129,10724,9840,9368,10359,10632,10719,11157,10030,10814,10669,9837,10536,8848,9414,9742,9753,9996,9242,10889,9471,9792,9432,7515,10484,10808,10563,10419,10109,10050,10096,10682,10212,9348,9231,6472,10538,10334,10799,10871,10472,10472,7186,8800,8074,8467,10649,2937701
Transversions ,7671,7120,6973,7102,7142,7657,7630,7528,7349,7508,6975,7011,7878,7339,7529,7095,7606,7608,7503,7496,7752,7426,7278,7312,6917,7479,7806,6968,6703,7106,6989,7563,7583,7331,6983,7548,7065,7634,7581,7697,6766,7286,7003,7016,7181,7508,7535,7442,7203,7187,7359,7102,6951,7223,7392,7169,7478,7180,7448,7405,7067,6991,6993,7483,7343,7795,7253,7109,7217,7546,7464,7231,6943,7313,7251,7475,6608,7135,6862,7135,6597,7464,7276,7109,7151,7020,7024,7671,7035,7335,7286,7158,6829,7301,7604,6658,7439,7153,7299,6726,7318,6918,7248,6836,7043,7013,7344,7288,6944,6714,7181,6943,6959,6464,7494,7553,5429,7612,7070,6730,7461,6837,8000,7322,7613,7348,6971,7635,6744,7347,7084,7131,6936,6810,6791,7296,7238,5646,6383,6745,6421,6844,6607,6992,7102,6793,6834,7316,7157,6694,6995,6883,6736,6656,6933,6803,6574,7350,6735,6442,6631,6719,6605,6384,6485,7359,6814,6708,6988,7051,6624,7025,6665,6565,6786,6770,6577,6581,6522,6823,6574,6612,6865,6699,6537,6826,6642,6665,6828,6771,6890,6750,6991,7022,6871,6781,7094,7097,6574,6863,6233,7006,6737,6659,6555,6485,6772,6573,6736,6825,6639,6795,7099,6592,6602,7018,6682,6949,6919,6933,7212,6979,7201,6835,6455,6748,7130,6738,6576,6566,6679,7458,7310,6842,6766,6649,6892,6610,6611,6566,7200,6995,6654,6696,6403,6643,7142,6566,6740,6665,6662,6655,6686,6702,6413,5765,6405,6327,6627,7797,7113,6829,7709,7751,7654,8059,7396,7784,7813,7336,7621,6508,6848,7140,7171,7166,6674,7826,6993,7195,6934,5591,7741,7862,7680,7527,7309,7374,7349,7765,7660,6754,6910,4763,7769,7563,7957,7838,7780,7660,5125,6429,6045,6334,7673,2144917
Ts/Tv ,1.365,1.343,1.372,1.389,1.377,1.386,1.382,1.345,1.379,1.365,1.373,1.366,1.351,1.350,1.344,1.357,1.366,1.354,1.362,1.366,1.352,1.353,1.355,1.374,1.362,1.365,1.390,1.373,1.368,1.377,1.399,1.355,1.385,1.363,1.341,1.375,1.362,1.367,1.353,1.410,1.390,1.401,1.419,1.339,1.377,1.372,1.373,1.385,1.358,1.373,1.377,1.397,1.394,1.353,1.379,1.347,1.364,1.385,1.332,1.385,1.379,1.379,1.363,1.385,1.383,1.384,1.356,1.318,1.389,1.367,1.385,1.364,1.368,1.397,1.374,1.383,1.363,1.362,1.357,1.352,1.351,1.372,1.381,1.347,1.354,1.357,1.358,1.397,1.368,1.354,1.405,1.387,1.345,1.323,1.385,1.367,1.351,1.375,1.387,1.317,1.379,1.350,1.337,1.342,1.354,1.390,1.366,1.387,1.334,1.354,1.361,1.361,1.395,1.354,1.387,1.356,1.371,1.344,1.360,1.389,1.361,1.335,1.370,1.356,1.385,1.394,1.350,1.376,1.391,1.353,1.363,1.378,1.362,1.365,1.369,1.385,1.349,1.344,1.371,1.389,1.341,1.336,1.378,1.358,1.381,1.382,1.387,1.360,1.382,1.377,1.368,1.333,1.364,1.321,1.363,1.400,1.374,1.380,1.359,1.376,1.367,1.369,1.372,1.359,1.346,1.369,1.342,1.376,1.401,1.377,1.374,1.340,1.383,1.369,1.333,1.352,1.404,1.404,1.372,1.329,1.360,1.353,1.406,1.416,1.388,1.359,1.374,1.376,1.378,1.350,1.350,1.375,1.389,1.374,1.385,1.381,1.390,1.358,1.368,1.379,1.332,1.394,1.342,1.378,1.371,1.378,1.363,1.372,1.337,1.387,1.382,1.331,1.376,1.417,1.375,1.329,1.352,1.382,1.404,1.365,1.407,1.346,1.377,1.399,1.362,1.370,1.380,1.400,1.381,1.364,1.410,1.356,1.358,1.371,1.385,1.373,1.409,1.356,1.382,1.375,1.395,1.397,1.368,1.388,1.372,1.344,1.405,1.384,1.375,1.414,1.386,1.381,1.401,1.385,1.380,1.349,1.350,1.371,1.378,1.375,1.383,1.372,1.344,1.372,1.400,1.384,1.356,1.389,1.366,1.341,1.382,1.360,1.375,1.364,1.360,1.395,1.385,1.391,1.354,1.361,1.360,1.344,1.354,1.375,1.375,1.384,1.383,1.363,1.374,1.376,1.333,1.384,1.336,1.359,1.356,1.366,1.357,1.387,1.346,1.367,1.402,1.369,1.336,1.337,1.388,1.370

Only known variants (i.e. the ones having a non-empty ID field): 

Sample ,1201K_1,12419S_13,12468S_18,12468S_6,12477S_13,12479S_1,12479S_13,12618S_1,12949S_2,13284S_1,13522S_5,13573S_1,1438K_1,14539S_4,16191S_6,16242S_1,16285S_13,16285S_3,16285S_6,16285S_8,16457S_2,17503S_3,1968_2,19798S_2,21086S_1,2180K_6,222K_1,22598S_2,24410S_2,24434S_3,24583S_2,24797S_7,24928S_21,24928S_22,24948S_10,24948S_12,24948S_13,24948S_2,24948S_24,24948S_27,24948S_29,24948S_9,25031S_1,25031S_15,25031S_16,25031S_17,25031S_19,25031S_27,25031S_33,25031S_34,25031S_7,25066S_1,25066S_2,25089S_4,25102S_1,25117S_1,25117S_2,25117S_3,25328S_3,25356S_1,25371S_2,25435S_11,25435S_4,25457S_1,25474S_1,25474S_5,25499S_7,25508S_1,25583S_2,25623S_11,25628S_11,25653S_3,25680S_11,25680S_13,25737S_1,25909S_3,25974S_11,25974S_13,25974S_15,25974S_17,25974S_18,25974S_19,25974S_21,25974S_30,25974S_31,25974S_35,25974S_X,26039S_2,26060S_1,26075S_6,26075S_7,26075S_8,26224S_2,26224S_3,26260S_3,26288S_4,26315S_1,26315S_3,26316S_14,26316S_7,26317S_1,26337S_11A,26337S_11B,26337S_2,26337S_22A,26337S_22B,26337S_28,26337S_32,26337S_34,26337S_37,26337S_39,26337S_40,26337S_43,26363S_1,26369S_4,26369S_8,26466S_2,26466S_5,26530S_1,26540S_182,26660S_1,26666S_1,26709S_1,26725S_1,26815S_3,26815S_8,26815S_9,26820S_1,26840S_10,26840S_5,26840S_7,26840S_9,26874S_5,26975S_1,26975S_2,26990S_10,26990S_11,26990S_4,26998S_1,27073S_1,27074S_1,27184S_4,27184S_6,27184S_8,27261S_1,27261S_10,27261S_11,27262S_1,27262S_3,27264S_2,27334S_5,27346S_2,27346S_4,27401S_1,27437S_1,27494S_12,27494S_4,27494S_5,27524S_12A,27524S_12B,27524S_22,27524S_30,27528S_1,27579S_1,27579S_3,27684S_5,27713S_1,27744S_1,27770S_20,27770S_4,27825S_4,27833S_10,27833S_13,278732_12,27873S_14,27873S_17,27873S_18,27873S_26,27873S_3,27873S_33,27873S_37,27873S_38,27873S_4,27873S_5,27873S_7,27885S_1,27885S_9,27886S_5,27914S_1,27914S_11,27914S_13,27914S_18,27914S_21,27914S_22,27914S_24,27914S_26,27914S_3,27914S_6,27914S_7,27914S_8,279155_2,27915S_3,27935S_7,27960S_1,28030S_2,28030S_6,28033S_14,28033S_15,28033S_18,28033S_23,28033S_3,28033S_9,28036S_11,28036S_2,28060S_8,28068S_9,28071S_1,28073S_1,28077S_5,28095S_1,28164S_15,28164S_3,28165S_1,28188S_2,28200S_3,28246S_4,28246S_7,28256S_1,28257S_1,28257S_2,28257S_4,28260S_2,28263S_2,28432S_19,28432S_20,28432S_3,28434S_9,28452S_11,28465S_2,28465S_21,28476S_7,28476S_8,28479S_2,28481S_1,28492S_1,28506S_1,28528S_1,28561S_2,28561S_5,28780S_1,28974S_11,28974S_15,28974S_22,28974S_29,29114S_14A,29114S_14B,29114S_19,29114S_24,29165S_5,29275S_1,29285S_20,29364S_2,29586S_4,29636S_1,29725S_4,29725S_5,365K_1,376K_7,401K_1,5610S_1,660K_1,7197_2,7798S_2,8075_7,8386S_19,861S_1,9128_3,917K_2,9187S_8,9494S_10,9750S_13,C_V_rose,Calcutta_4,Entukura,Enyeru,Enzirabahima,HB,HJ,HX,Kabucuragye,Kazirakwe,Kokopo,Long_Tavoy,Malaccensis,Nakasabira,Nakawere,Nakayonga,Namwezi,Nante,Nfuuka,P_lilin,SH3142,SH3217,SH3362,Tereza,Total
Transitions ,10468,9559,9570,9864,9832,10616,10542,10123,10132,10248,9577,9578,10642,9909,10119,9629,10388,10302,10219,10237,10481,10044,9862,10045,9418,10206,10853,9570,9168,9782,9781,10248,10503,9990,9366,10375,9619,10435,10260,10854,9408,10209,9934,9391,9887,10302,10347,10309,9784,9867,10131,9922,9693,9775,10191,9654,10203,9942,9918,10257,9744,9639,9529,10365,10156,10785,9835,9372,10021,10315,10341,9865,9495,10214,9963,10335,9006,9716,9311,9643,8910,10242,10045,9579,9680,9526,9541,10719,9624,9928,10238,9928,9185,9660,10531,9104,10050,9836,10122,8861,10089,9339,9691,9176,9536,9746,10030,10106,9262,9094,9775,9449,9706,8752,10397,10242,7445,10228,9618,9347,10151,9129,10963,9927,10543,10240,9410,10502,9382,9937,9656,9828,9448,9297,9300,10108,9765,7588,8751,9368,8611,9141,9107,9498,9811,9389,9480,9950,9891,9220,9570,9173,9190,8792,9450,9527,9032,10142,9152,8863,9062,9195,9065,8677,8731,10078,9146,9228,9791,9706,9103,9414,9220,8988,9049,9153,9235,9242,8949,9071,8941,8947,9649,9489,9071,9277,9128,9171,9409,9140,9303,9279,9708,9645,9519,9366,9860,9636,8996,9461,8301,9763,9044,9179,8985,8935,9228,9015,9003,9463,9176,9046,9766,9338,9075,9328,9032,9603,9714,9465,10145,9392,9915,9565,8794,9245,9836,9430,9083,8958,9417,10116,9930,9381,9370,9132,9709,8962,9136,9028,10046,9774,9103,9292,8786,8930,10032,9089,9266,9423,9231,9192,9364,9280,8849,7776,8644,8672,9129,10724,9840,9368,10359,10632,10719,11157,10030,10814,10669,9837,10536,8848,9414,9742,9753,9996,9242,10889,9471,9792,9432,7515,10484,10808,10563,10419,10109,10050,10096,10682,10212,9348,9231,6472,10538,10334,10799,10871,10472,10472,7186,8800,8074,8467,10649,2937701
Transversions ,7671,7120,6973,7102,7142,7657,7630,7528,7349,7508,6975,7011,7878,7339,7529,7095,7606,7608,7503,7496,7752,7426,7278,7312,6917,7479,7806,6968,6703,7106,6989,7563,7583,7331,6983,7548,7065,7634,7581,7697,6766,7286,7003,7016,7181,7508,7535,7442,7203,7187,7359,7102,6951,7223,7392,7169,7478,7180,7448,7405,7067,6991,6993,7483,7343,7795,7253,7109,7217,7546,7464,7231,6943,7313,7251,7475,6608,7135,6862,7135,6597,7464,7276,7109,7151,7020,7024,7671,7035,7335,7286,7158,6829,7301,7604,6658,7439,7153,7299,6726,7318,6918,7248,6836,7043,7013,7344,7288,6944,6714,7181,6943,6959,6464,7494,7553,5429,7612,7070,6730,7461,6837,8000,7322,7613,7348,6971,7635,6744,7347,7084,7131,6936,6810,6791,7296,7238,5646,6383,6745,6421,6844,6607,6992,7102,6793,6834,7316,7157,6694,6995,6883,6736,6656,6933,6803,6574,7350,6735,6442,6631,6719,6605,6384,6485,7359,6814,6708,6988,7051,6624,7025,6665,6565,6786,6770,6577,6581,6522,6823,6574,6612,6865,6699,6537,6826,6642,6665,6828,6771,6890,6750,6991,7022,6871,6781,7094,7097,6574,6863,6233,7006,6737,6659,6555,6485,6772,6573,6736,6825,6639,6795,7099,6592,6602,7018,6682,6949,6919,6933,7212,6979,7201,6835,6455,6748,7130,6738,6576,6566,6679,7458,7310,6842,6766,6649,6892,6610,6611,6566,7200,6995,6654,6696,6403,6643,7142,6566,6740,6665,6662,6655,6686,6702,6413,5765,6405,6327,6627,7797,7113,6829,7709,7751,7654,8059,7396,7784,7813,7336,7621,6508,6848,7140,7171,7166,6674,7826,6993,7195,6934,5591,7741,7862,7680,7527,7309,7374,7349,7765,7660,6754,6910,4763,7769,7563,7957,7838,7780,7660,5125,6429,6045,6334,7673,2144917
Ts/Tv ,1.365,1.343,1.372,1.389,1.377,1.386,1.382,1.345,1.379,1.365,1.373,1.366,1.351,1.350,1.344,1.357,1.366,1.354,1.362,1.366,1.352,1.353,1.355,1.374,1.362,1.365,1.390,1.373,1.368,1.377,1.399,1.355,1.385,1.363,1.341,1.375,1.362,1.367,1.353,1.410,1.390,1.401,1.419,1.339,1.377,1.372,1.373,1.385,1.358,1.373,1.377,1.397,1.394,1.353,1.379,1.347,1.364,1.385,1.332,1.385,1.379,1.379,1.363,1.385,1.383,1.384,1.356,1.318,1.389,1.367,1.385,1.364,1.368,1.397,1.374,1.383,1.363,1.362,1.357,1.352,1.351,1.372,1.381,1.347,1.354,1.357,1.358,1.397,1.368,1.354,1.405,1.387,1.345,1.323,1.385,1.367,1.351,1.375,1.387,1.317,1.379,1.350,1.337,1.342,1.354,1.390,1.366,1.387,1.334,1.354,1.361,1.361,1.395,1.354,1.387,1.356,1.371,1.344,1.360,1.389,1.361,1.335,1.370,1.356,1.385,1.394,1.350,1.376,1.391,1.353,1.363,1.378,1.362,1.365,1.369,1.385,1.349,1.344,1.371,1.389,1.341,1.336,1.378,1.358,1.381,1.382,1.387,1.360,1.382,1.377,1.368,1.333,1.364,1.321,1.363,1.400,1.374,1.380,1.359,1.376,1.367,1.369,1.372,1.359,1.346,1.369,1.342,1.376,1.401,1.377,1.374,1.340,1.383,1.369,1.333,1.352,1.404,1.404,1.372,1.329,1.360,1.353,1.406,1.416,1.388,1.359,1.374,1.376,1.378,1.350,1.350,1.375,1.389,1.374,1.385,1.381,1.390,1.358,1.368,1.379,1.332,1.394,1.342,1.378,1.371,1.378,1.363,1.372,1.337,1.387,1.382,1.331,1.376,1.417,1.375,1.329,1.352,1.382,1.404,1.365,1.407,1.346,1.377,1.399,1.362,1.370,1.380,1.400,1.381,1.364,1.410,1.356,1.358,1.371,1.385,1.373,1.409,1.356,1.382,1.375,1.395,1.397,1.368,1.388,1.372,1.344,1.405,1.384,1.375,1.414,1.386,1.381,1.401,1.385,1.380,1.349,1.350,1.371,1.378,1.375,1.383,1.372,1.344,1.372,1.400,1.384,1.356,1.389,1.366,1.341,1.382,1.360,1.375,1.364,1.360,1.395,1.385,1.391,1.354,1.361,1.360,1.344,1.354,1.375,1.375,1.384,1.383,1.363,1.374,1.376,1.333,1.384,1.336,1.359,1.356,1.366,1.357,1.387,1.346,1.367,1.402,1.369,1.336,1.337,1.388,1.370

Allele frequency


Min1
Max98
Mean30.164
Median18
Standard deviation27.928
Values1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98
Count97,402,708,899,1454,1129,1016,962,940,1004,761,793,667,654,599,558,507,502,426,529,432,390,380,364,306,276,273,289,224,283,229,216,209,230,177,176,185,212,160,186,153,157,132,149,124,138,111,102,91,105,113,109,108,97,94,92,92,100,89,112,107,100,103,104,97,108,98,104,97,152,116,104,123,123,102,116,118,140,156,197,115,148,146,148,130,149,146,167,201,229,202,201,210,196,158,123,64,8

Allele Count


Min8
Max599
Mean187.012
Median115
Standard deviation170.347
Values8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,166,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,192,193,194,195,196,197,198,199,200,201,202,203,204,205,206,207,208,209,210,211,212,213,214,215,216,217,218,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233,234,235,236,237,238,239,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265,266,267,268,269,270,271,272,273,274,275,276,277,278,279,280,281,282,283,284,285,286,287,288,289,290,291,292,293,294,295,296,297,298,299,300,301,302,303,304,305,306,307,308,309,310,311,312,313,314,315,316,317,318,319,320,321,322,323,324,325,326,327,328,329,330,331,332,333,334,335,336,337,338,339,340,341,342,343,344,345,346,347,348,349,350,351,352,353,354,355,356,357,358,359,360,361,362,363,364,365,366,367,368,369,370,371,372,373,374,375,376,377,378,379,380,381,382,383,384,385,386,387,388,389,390,391,392,393,394,395,396,397,398,399,400,401,402,403,404,405,406,407,408,409,410,411,412,413,414,415,416,417,418,419,420,421,422,423,424,425,426,427,428,429,430,431,432,433,434,435,436,437,438,439,440,441,442,443,444,445,446,447,448,449,450,451,452,453,454,455,456,457,458,459,460,461,462,463,464,465,466,467,468,469,470,471,472,473,474,475,476,477,478,479,480,481,482,483,484,485,486,487,488,489,490,491,492,493,494,495,496,497,498,499,500,501,502,503,504,505,506,507,508,509,510,511,512,513,514,515,516,517,518,519,520,521,522,523,524,525,526,527,528,529,530,531,532,533,534,535,536,537,538,539,540,541,542,543,544,545,546,547,548,549,550,551,552,553,554,555,556,557,558,559,560,561,562,563,564,565,566,567,568,569,570,571,572,573,574,575,576,577,578,579,580,581,582,583,584,585,586,587,588,589,590,591,592,593,594,595,596,597,598,599
Count3,6,14,30,44,50,41,70,66,84,91,101,104,112,123,122,146,114,132,169,144,154,186,234,206,254,254,246,260,219,159,220,183,178,170,188,160,171,163,157,177,157,158,154,174,146,173,149,162,168,146,164,151,141,172,148,156,125,148,114,130,147,125,119,125,115,142,128,141,149,117,116,119,118,93,109,127,101,112,101,104,114,113,110,91,101,88,116,93,110,97,85,111,84,81,100,80,89,87,83,78,90,89,68,78,89,88,90,79,55,76,75,66,75,79,74,69,63,107,70,67,67,75,72,68,79,71,53,57,60,91,64,65,72,63,74,55,54,62,61,53,66,42,75,67,48,47,52,42,63,54,47,52,32,44,49,52,39,56,37,46,44,51,52,45,54,49,50,39,29,29,45,44,24,53,40,41,44,37,46,42,33,41,38,47,33,34,36,30,44,34,25,41,42,30,33,41,41,34,30,43,35,36,42,37,37,32,34,29,29,24,29,26,33,36,33,31,17,35,29,24,33,35,29,35,35,34,40,37,31,20,29,33,18,30,30,25,24,29,30,27,19,32,28,29,14,24,25,33,31,33,23,24,22,24,25,24,24,19,19,21,29,29,30,23,19,19,21,17,19,19,24,24,33,22,25,21,12,25,15,25,17,13,24,17,16,9,21,21,18,17,23,17,15,15,11,10,16,16,11,16,12,20,14,15,25,20,21,15,17,24,23,19,14,11,18,20,16,23,22,11,16,15,16,9,23,16,18,13,23,18,14,11,15,19,22,11,13,16,11,11,10,17,22,17,15,11,19,16,20,13,21,12,16,23,15,6,17,11,14,22,26,13,13,13,15,11,18,23,24,16,12,20,17,18,20,13,14,14,15,20,24,16,20,19,10,14,15,26,26,13,14,16,16,12,12,24,15,20,16,21,15,16,17,14,19,17,19,20,11,19,16,19,10,16,14,13,23,21,25,22,16,26,18,20,25,21,22,19,20,18,16,18,13,15,14,25,19,15,24,21,23,18,22,17,24,17,16,29,20,15,21,21,12,16,17,22,18,23,13,22,18,23,20,14,21,24,16,21,18,28,24,28,21,29,25,23,28,33,18,27,27,31,25,30,29,28,19,23,22,16,12,23,31,22,19,28,25,23,19,27,26,25,23,26,24,30,27,21,24,22,23,24,23,20,20,20,17,25,17,25,30,35,16,23,20,25,40,22,37,33,18,26,25,28,30,19,41,41,37,33,26,45,36,39,33,26,24,36,29,34,28,39,36,38,43,25,39,27,29,34,31,36,33,39,37,35,32,31,36,27,35,29,33,24,30,21,21,20,25,30,20,11,17,12,11,10,13,10,8,6,2

Hom/Het per sample 




Sample_names , 1201K_1, 12419S_13, 12468S_18, 12468S_6, 12477S_13, 12479S_1, 12479S_13, 12618S_1, 12949S_2, 13284S_1, 13522S_5, 13573S_1, 1438K_1, 14539S_4, 16191S_6, 16242S_1, 16285S_13, 16285S_3, 16285S_6, 16285S_8, 16457S_2, 17503S_3, 1968_2, 19798S_2, 21086S_1, 2180K_6, 222K_1, 22598S_2, 24410S_2, 24434S_3, 24583S_2, 24797S_7, 24928S_21, 24928S_22, 24948S_10, 24948S_12, 24948S_13, 24948S_2, 24948S_24, 24948S_27, 24948S_29, 24948S_9, 25031S_1, 25031S_15, 25031S_16, 25031S_17, 25031S_19, 25031S_27, 25031S_33, 25031S_34, 25031S_7, 25066S_1, 25066S_2, 25089S_4, 25102S_1, 25117S_1, 25117S_2, 25117S_3, 25328S_3, 25356S_1, 25371S_2, 25435S_11, 25435S_4, 25457S_1, 25474S_1, 25474S_5, 25499S_7, 25508S_1, 25583S_2, 25623S_11, 25628S_11, 25653S_3, 25680S_11, 25680S_13, 25737S_1, 25909S_3, 25974S_11, 25974S_13, 25974S_15, 25974S_17, 25974S_18, 25974S_19, 25974S_21, 25974S_30, 25974S_31, 25974S_35, 25974S_X, 26039S_2, 26060S_1, 26075S_6, 26075S_7, 26075S_8, 26224S_2, 26224S_3, 26260S_3, 26288S_4, 26315S_1, 26315S_3, 26316S_14, 26316S_7, 26317S_1, 26337S_11A, 26337S_11B, 26337S_2, 26337S_22A, 26337S_22B, 26337S_28, 26337S_32, 26337S_34, 26337S_37, 26337S_39, 26337S_40, 26337S_43, 26363S_1, 26369S_4, 26369S_8, 26466S_2, 26466S_5, 26530S_1, 26540S_182, 26660S_1, 26666S_1, 26709S_1, 26725S_1, 26815S_3, 26815S_8, 26815S_9, 26820S_1, 26840S_10, 26840S_5, 26840S_7, 26840S_9, 26874S_5, 26975S_1, 26975S_2, 26990S_10, 26990S_11, 26990S_4, 26998S_1, 27073S_1, 27074S_1, 27184S_4, 27184S_6, 27184S_8, 27261S_1, 27261S_10, 27261S_11, 27262S_1, 27262S_3, 27264S_2, 27334S_5, 27346S_2, 27346S_4, 27401S_1, 27437S_1, 27494S_12, 27494S_4, 27494S_5, 27524S_12A, 27524S_12B, 27524S_22, 27524S_30, 27528S_1, 27579S_1, 27579S_3, 27684S_5, 27713S_1, 27744S_1, 27770S_20, 27770S_4, 27825S_4, 27833S_10, 27833S_13, 278732_12, 27873S_14, 27873S_17, 27873S_18, 27873S_26, 27873S_3, 27873S_33, 27873S_37, 27873S_38, 27873S_4, 27873S_5, 27873S_7, 27885S_1, 27885S_9, 27886S_5, 27914S_1, 27914S_11, 27914S_13, 27914S_18, 27914S_21, 27914S_22, 27914S_24, 27914S_26, 27914S_3, 27914S_6, 27914S_7, 27914S_8, 279155_2, 27915S_3, 27935S_7, 27960S_1, 28030S_2, 28030S_6, 28033S_14, 28033S_15, 28033S_18, 28033S_23, 28033S_3, 28033S_9, 28036S_11, 28036S_2, 28060S_8, 28068S_9, 28071S_1, 28073S_1, 28077S_5, 28095S_1, 28164S_15, 28164S_3, 28165S_1, 28188S_2, 28200S_3, 28246S_4, 28246S_7, 28256S_1, 28257S_1, 28257S_2, 28257S_4, 28260S_2, 28263S_2, 28432S_19, 28432S_20, 28432S_3, 28434S_9, 28452S_11, 28465S_2, 28465S_21, 28476S_7, 28476S_8, 28479S_2, 28481S_1, 28492S_1, 28506S_1, 28528S_1, 28561S_2, 28561S_5, 28780S_1, 28974S_11, 28974S_15, 28974S_22, 28974S_29, 29114S_14A, 29114S_14B, 29114S_19, 29114S_24, 29165S_5, 29275S_1, 29285S_20, 29364S_2, 29586S_4, 29636S_1, 29725S_4, 29725S_5, 365K_1, 376K_7, 401K_1, 5610S_1, 660K_1, 7197_2, 7798S_2, 8075_7, 8386S_19, 861S_1, 9128_3, 917K_2, 9187S_8, 9494S_10, 9750S_13, C_V_rose, Calcutta_4, Entukura, Enyeru, Enzirabahima, HB, HJ, HX, Kabucuragye, Kazirakwe, Kokopo, Long_Tavoy, Malaccensis, Nakasabira, Nakawere, Nakayonga, Namwezi, Nante, Nfuuka, P_lilin, SH3142, SH3217, SH3362, Tereza
Reference , 17239, 17166, 17964, 17069, 17902, 17215, 17436, 15488, 17714, 17578, 18006, 18043, 16597, 17282, 17998, 17941, 17760, 17647, 17361, 17970, 17294, 17255, 17735, 17657, 17552, 17423, 16214, 17986, 17884, 17841, 17706, 17471, 16833, 16143, 17184, 17053, 17164, 17164, 17590, 17180, 16601, 17658, 17984, 18128, 17859, 16719, 17673, 17756, 17029, 18086, 17772, 17903, 17967, 17584, 17190, 17781, 15389, 17781, 16419, 17417, 17812, 17947, 17380, 17536, 17691, 17243, 17834, 17980, 17577, 17540, 17519, 17973, 17639, 17757, 17885, 17505, 18468, 17224, 18235, 16941, 17222, 17583, 17758, 17350, 17629, 16796, 17174, 17255, 18012, 17684, 17451, 17778, 18008, 17828, 17202, 18000, 17176, 16653, 17827, 18452, 17799, 18039, 15725, 17719, 17947, 18114, 17684, 17621, 17968, 18334, 16360, 17079, 18114, 18689, 17278, 17551, 20101, 17225, 15867, 18563, 17230, 18315, 17051, 17326, 17295, 17635, 17518, 17344, 18254, 17730, 18306, 17938, 16789, 17894, 18253, 17261, 17875, 19758, 18737, 17598, 18706, 18358, 18468, 16573, 18057, 18157, 18138, 16473, 17861, 18562, 18132, 16700, 17670, 18175, 18216, 18291, 18291, 15443, 18361, 18555, 18490, 17775, 18514, 18362, 17991, 17513, 18444, 18422, 18128, 17736, 18497, 16471, 18464, 18237, 18105, 18296, 18465, 18603, 18668, 18373, 18443, 18435, 18162, 18104, 18348, 17592, 18497, 17727, 18239, 18399, 17504, 18009, 18112, 17611, 18140, 18227, 17238, 18117, 17320, 17133, 18596, 15643, 18345, 18478, 18517, 18515, 18285, 18581, 18037, 18275, 18474, 16305, 17755, 18390, 18547, 18217, 18265, 18015, 18115, 18137, 17694, 18110, 17757, 18231, 18352, 18403, 17993, 18206, 17726, 18028, 17995, 17527, 17307, 18116, 17522, 18441, 18132, 18444, 18213, 18415, 17901, 17213, 18529, 18378, 18767, 18482, 17871, 18581, 18368, 17423, 18414, 18326, 18431, 18419, 18538, 19849, 18490, 18855, 18523, 16569, 17782, 17813, 17120, 16961, 16440, 16677, 17726, 16521, 16236, 17502, 16889, 18820, 17976, 16154, 17479, 17662, 18501, 17009, 17804, 17718, 17628, 19473, 17738, 17281, 17481, 17021, 17782, 17744, 17741, 17126, 15863, 18756, 17340, 21120, 16985, 17353, 16510, 17174, 17057, 17507, 20584, 19129, 19551, 19058, 16973
Het , 1739, 3345, 1885, 3252, 1578, 1653, 1312, 5729, 1447, 1444, 1792, 1681, 2642, 2544, 712, 1750, 842, 1152, 1912, 683, 1535, 2376, 1746, 1685, 2917, 1825, 3269, 1846, 2717, 1786, 2174, 1603, 2604, 4749, 3639, 2327, 3344, 1959, 1335, 1445, 4980, 1545, 1451, 1693, 1570, 3108, 1128, 1093, 3311, 1130, 1322, 1526, 1778, 2190, 2393, 1971, 5897, 1672, 4152, 1860, 1921, 1832, 3074, 1436, 1475, 1290, 1600, 1915, 1964, 1415, 1513, 1314, 2640, 1315, 1372, 1536, 1806, 3057, 1713, 3696, 4405, 1484, 1519, 2968, 2267, 4218, 3443, 1456, 1673, 1725, 1930, 1714, 2326, 1739, 1817, 2594, 2515, 4061, 1281, 1865, 1351, 2021, 5967, 2906, 1883, 1369, 1614, 1720, 2214, 1880, 4680, 3806, 1463, 1762, 1909, 1459, 1280, 2066, 5934, 1153, 2284, 1760, 1291, 2455, 1610, 1498, 2939, 1531, 1722, 1612, 1004, 1521, 4394, 2461, 1759, 2430, 1603, 1606, 1748, 3047, 1912, 1655, 1706, 4720, 1329, 1860, 1766, 4144, 1586, 1318, 1527, 4900, 3090, 2558, 1541, 1444, 2168, 5978, 1747, 1941, 1683, 2892, 1658, 2571, 3158, 1893, 1508, 1576, 1321, 2127, 1635, 4975, 1543, 2329, 2311, 1841, 1614, 1327, 1549, 1716, 1955, 1927, 1518, 1960, 2052, 3069, 1592, 3066, 1641, 1647, 3155, 2309, 1433, 2467, 1686, 1755, 2926, 1389, 4146, 3766, 2630, 6301, 1885, 1562, 1782, 1906, 1786, 1606, 2543, 1518, 1593, 5905, 1981, 1646, 1585, 1576, 2112, 1774, 1493, 1684, 1611, 1765, 1726, 1494, 2403, 1557, 1404, 1776, 3245, 2776, 2270, 1728, 2502, 1901, 3176, 1693, 1491, 1896, 2183, 1932, 1308, 3161, 1541, 1612, 1633, 1819, 1440, 1539, 1614, 3422, 1635, 1857, 1444, 1536, 2018, 1117, 2327, 1647, 1554, 2697, 1839, 2533, 2048, 2051, 3103, 1786, 1478, 2716, 3402, 2179, 2421, 1360, 2142, 5166, 2474, 1870, 1438, 1623, 2284, 1933, 2734, 2304, 655, 1124, 1151, 2368, 1374, 1444, 1429, 1657, 4758, 742, 3535, 881, 2079, 1753, 2580, 1299, 1990, 1210, 877, 869, 1135, 1439, 2088
Hom , 8200, 6667, 7329, 6857, 7698, 8310, 8430, 5961, 8017, 8156, 7380, 7454, 7939, 7352, 8468, 7487, 8576, 8379, 7905, 8525, 8349, 7547, 7697, 7836, 6709, 7930, 7695, 7346, 6577, 7551, 7298, 8104, 7741, 6286, 6355, 7798, 6670, 8055, 8253, 8553, 5597, 7975, 7743, 7357, 7749, 7351, 8377, 8329, 6838, 7962, 8084, 7749, 7433, 7404, 7595, 7426, 5892, 7725, 6607, 7901, 7445, 7399, 6724, 8206, 8012, 8645, 7744, 7283, 7637, 8223, 8146, 7891, 6899, 8106, 7921, 8137, 6904, 6897, 7230, 6541, 5551, 8111, 7901, 6860, 7282, 6164, 6561, 8467, 7493, 7769, 7797, 7686, 6844, 7611, 8159, 6584, 7487, 6464, 8070, 6861, 8028, 7118, 5486, 6553, 7348, 7695, 7880, 7837, 6996, 6964, 6138, 6293, 7601, 6727, 7991, 8168, 5797, 7887, 5377, 7462, 7664, 7103, 8836, 7397, 8273, 8045, 6721, 8303, 7202, 7836, 7868, 7719, 5995, 6823, 7166, 7487, 7700, 5814, 6693, 6533, 6560, 7165, 7004, 5885, 7792, 7161, 7274, 6561, 7731, 7298, 7519, 5578, 6418, 6445, 7421, 7443, 6719, 5757, 7070, 6682, 7005, 6511, 7006, 6245, 6029, 7772, 7226, 7180, 7729, 7315, 7046, 5732, 7171, 6612, 6762, 7041, 7099, 7248, 6961, 7089, 6780, 6816, 7498, 7114, 6778, 6517, 7089, 6385, 7298, 7132, 6519, 6860, 7633, 7100, 7352, 7196, 7014, 7672, 5712, 6279, 5952, 5234, 6948, 7138, 6879, 6757, 7107, 6991, 6598, 7385, 7111, 4968, 7442, 7142, 7046, 7385, 6801, 7389, 7570, 7357, 7873, 7303, 7695, 7453, 6423, 7218, 7781, 7196, 6207, 6374, 6913, 7923, 7369, 7161, 6480, 7044, 7555, 6838, 6782, 6831, 7969, 6804, 7108, 7188, 6778, 6877, 7867, 7058, 7196, 6333, 7129, 6995, 7303, 7223, 6622, 6212, 6361, 6676, 7101, 7912, 7557, 6832, 8010, 8166, 7635, 8715, 7974, 7941, 7540, 7497, 7868, 6998, 7060, 5858, 7225, 7646, 7239, 8546, 7090, 7527, 6816, 5401, 8785, 8773, 8546, 7789, 8022, 7990, 8008, 8395, 6557, 7680, 6303, 5177, 8114, 8072, 8088, 8705, 8131, 8461, 5717, 7180, 6492, 6681, 8117
Missing , 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0

Codon changes

How to read this table:
- Rows are reference codons and columns are changed codons. E.g. Row 'AAA' column 'TAA' indicates how many 'AAA' codons have been replaced by 'TAA' codons.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  AAA AAC AAG AAT ACA ACC ACG ACT AGA AGC AGG AGT ATA ATC ATG ATT CAA CAC CAG CAT CCA CCC CCG CCT CGA CGC CGG CGT CTA CTC CTG CTT GAA GAC GAG GAT GCA GCC GCG GCT GGA GGC GGG GGT GTA GTC GTG GTT TAA TAC TAG TAT TCA TCC TCG TCT TGA TGC TGG TGT TTA TTC TTG TTT
AAA 3 20 47 10 13       22       18       17                               27                               4                              
AAC 9 1 8 89   11       43       17       5                               33                               12                            
AAG 78 21 3 16     16       35       19       14                               24                               8                          
AAT 5 56 9 4       18       14       11       2                               25                               13                        
ACA 22       5 12 87 24 13       29               4                               34                               13                      
ACC   13     17 1 27 53   7       29               1                               37                               10                    
ACG     7   66 13   22     9       50               7                               20                               11                  
ACT       19 20 57 15 3       12       21               18                               34                               10                
AGA 22       8       3 3 35 12 6                       17                               16                               1              
AGC   43       30     19 7 13 97   24                       12                               34                               8            
AGG     47       8   64 9 2 11     13                       13                               19                               6          
AGT       48       15 5 64 5 9       10                       4                               21                               10        
ATA 5       16       7       1 14 17 25                         2                               26                               10      
ATC   7       11       5     35 5 4 54                           5                               25                               17    
ATG     4       52       9   28 12 5 14                             10                               41                               29  
ATT       10       17       14 15 61   1                               6                               48                               7
CAA 16                               3 12 62 12         28       11       29                               7                              
CAC   13                             5 1 12 50   6       17       9       5                               11                            
CAG     41                           100 11 4 35     11       52       35       21                               6                          
CAT       12                         8 46 7 4       1       33       5       10                               16                        
CCA         7                       9       3 12 65 30 11       12               12                               28                      
CCC           5                       9     17 3 16 50   3       28               10                               22                    
CCG             12                       18   110 15 4 46     3       43               6                               17                  
CCT               16                       29 22 43 16 1       12       21               18                               35                
CGA                 13               43       8       7 10 17 5 14                       4                               12              
CGC                   14               30       4     21 3 17 31   16                       5                               28            
CGG                     12               36       4   19 14 2 15     16                       10                               21          
CGT                       6               25         16 27 2         5                       5                               23        
CTA                         4       3       2       5       2 13 48 10                         4                               9      
CTC                           17       19       4       4     34 6 39 76                           13                               30    
CTG                             26       12       32       5   98 42 11 25                             14                               106  
CTT                               19       16       5       9 21 47 10 7                               18                               15
GAA 47                               19                               4 14 58 36 16       19       10       6                              
GAC   34                               6                             14 3 29 142   4       15       4       8                            
GAG     42                               23                           86 33 4 34     28       24       21       6                          
GAT       32                               8                         43 104 13 10       11       14       11       16                        
GCA         62                               12                       26       2 25 83 74 16       34               30                      
GCC           69                               15                       21     35 2 19 123   22       48               18                    
GCG             38                               11                       21   113 33 4 26     12       41               10                  
GCT               56                               40                       24 62 82 42 5       17       50               46                
GGA                 46                               9               22       15       5 8 34 24 7                       5              
GGC                   32                               6               31       10     31   18 99   11                       14            
GGG                     17                               8               19       16   58 21   31     4                       3          
GGT                       32                               4               23       8 30 44 12 2       11                       13        
GTA                         30                               1       3       15       4       1 27 25 10                         20      
GTC                           58                               17       14       22       11     22 4 33 77                           4    
GTG                             57                               8       11       51       10   50 25 1 20                             14  
GTT                               73                               8       13       33       7 30 49 32                                 8
TAA 1                               3                                                               2 1 1 2 3       1              
TAC   3                               18                               9                               2 8 55   6       21       13    
TAG                                     1                               3                           1 1 4               5       2  
TAT       9                               15                               1                         1 44 2 1       7       5       18
TCA         7                               21                               36                       2       5 5 108 34 9       18      
TCC           15                               26                               17                       14     27 7 32 89   9       6    
TCG             11                               21                               11                       3   123 21 2 26     5       38  
TCT               14                               27                               23                       16 20 37 20 2       11       18
TGA                 5                               1                               7               2       9       6 1 2 4        
TGC                   9                               7                               7               12       13     3 5 3 58   5    
TGG                     4                               8                               4               5       5   11 4 3 5     4  
TGT                       11                               10                               2               12       5 2 21 2 3       3
TTA                         3                               13                               6               10       2         3 30 9
TTC                           11                               13                               8       15       17       4     14 7 4 64
TTG                             9                               62                               9       3       36       2   35 11 2 6
TTT                               9                               16                               4       14       6       2 9 41 4 2

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * ? A C D E F G H I K L M N P Q R S T V W Y
* 17     5   3   7     1 2       4 6 12     7 4
?   2                                        
A     730   45 47   67             78     104 225 173    
C 5     87     8 9                 17 38     5 24
D     15   259 99   29 14         66           15   24
E 12   44   117 152   43     89         42       31    
F       6     114     20   60           23   12   29
G 5   49 27 54 41   417                 90 64   33 3  
H         15       101     14   25 7 32 50         27
I             24     211 5 23 21 17     7 19 44 99    
K 12         51       18 131   19 67   31 57   29      
L 5           74   35 43   746 35   43 15 23 46   64 2  
M                   54 4 39 5       9   52 41    
N         58       7 28 31     150       57 29     25
P     46           38     104     453 27 29 102 40      
Q 13         50     70   57 46     11 169 80          
R 13     51       59 55 6 69 51 13   16 79 365 55 16   27  
S 14   87 38     24 55   34   56   91 95   58 735 92   5 30
T     125             79 29   50 32 30   22 63 422      
V     121   27 14 12 32   161   68 57             406    
W 16     9       4       4         12 5     3  
Y 11     26 10   31   33         12       13       102

Variants by chromosome

		

		1, Position,0,100000,200000,300000,400000,500000,600000,700000,800000,900000,1000000,1100000,1200000,1300000,1400000,1500000,1600000,1700000,1800000,1900000,2000000,2100000,2200000,2300000,2400000,2500000,2600000,2700000,2800000,2900000,3000000,3100000,3200000,3300000,3400000,3500000,3600000,3700000,3800000,3900000,4000000,4100000,4200000,4300000,4400000,4500000,4600000,4700000,4800000,4900000,5000000,5100000,5200000,5300000,5400000,5500000,5600000,5700000,5800000,5900000,6000000,6100000,6200000,6300000,6400000,6500000,6600000,6700000,6800000,6900000,7000000,7100000,7200000,7300000,7400000,7500000,7600000,7700000,7800000,7900000,8000000,8100000,8200000,8300000,8400000,8500000,8600000,8700000,8800000,8900000,9000000,9100000,9200000,9300000,9400000,9500000,9600000,9700000,9800000,9900000,10000000,10100000,10200000,10300000,10400000,10500000,10600000,10700000,10800000,10900000,11000000,11100000,11200000,11300000,11400000,11500000,11600000,11700000,11800000,11900000,12000000,12100000,12200000,12300000,12400000,12500000,12600000,12700000,12800000,12900000,13000000,13100000,13200000,13300000,13400000,13500000,13600000,13700000,13800000,13900000,14000000,14100000,14200000,14300000,14400000,14500000,14600000,14700000,14800000,14900000,15000000,15100000,15200000,15300000,15400000,15500000,15600000,15700000,15800000,15900000,16000000,16100000,16200000,16300000,16400000,16500000,16600000,16700000,16800000,16900000,17000000,17100000,17200000,17300000,17400000,17500000,17600000,17700000,17800000,17900000,18000000,18100000,18200000,18300000,18400000,18500000,18600000,18700000,18800000,18900000,19000000,19100000,19200000,19300000,19400000,19500000,19600000,19700000,19800000,19900000,20000000,20100000,20200000,20300000,20400000,20500000,20600000,20700000,20800000,20900000,21000000,21100000,21200000,21300000,21400000,21500000,21600000,21700000,21800000,21900000,22000000,22100000,22200000,22300000,22400000,22500000,22600000,22700000,22800000,22900000,23000000,23100000,23200000,23300000,23400000,23500000,23600000,23700000,23800000,23900000,24000000,24100000,24200000,24300000,24400000,24500000,24600000,24700000,24800000,24900000,25000000,25100000,25200000,25300000,25400000,25500000,25600000,25700000,25800000,25900000,26000000,26100000,26200000,26300000,26400000,26500000,26600000,26700000,26800000,26900000,27000000,27100000,27200000,27300000,27400000,27500000,27600000,27700000,27800000,27900000,28000000,28100000,28200000,28300000,28400000,28500000,28600000,28700000,28800000,28900000,29000000
1,Count,3,19,0,16,21,10,7,7,10,5,13,44,22,2,23,0,10,9,26,4,8,17,5,31,12,0,4,7,0,7,8,15,6,12,6,18,0,6,8,19,35,25,6,5,5,34,0,10,4,3,6,7,13,9,7,14,10,31,12,2,9,1,0,8,4,16,6,1,5,15,0,3,5,5,23,26,15,23,6,1,14,10,5,9,2,9,9,2,14,18,44,0,6,11,5,5,6,5,23,5,1,0,6,19,9,7,14,20,6,27,8,5,18,11,39,14,19,11,14,28,13,8,7,16,17,6,1,18,1,12,3,25,3,6,6,29,9,7,3,12,20,2,5,3,2,14,3,0,0,0,5,32,0,4,4,4,0,0,0,0,0,0,0,0,10,20,0,0,0,0,15,0,0,4,0,6,4,0,5,0,10,0,0,0,0,0,0,0,32,0,10,2,0,0,0,0,10,4,0,0,0,0,4,0,0,0,0,0,0,0,4,0,0,0,3,0,6,1,6,0,0,6,19,8,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,4,0,1,0,25,9,0,0,5,0,16,6,5,8,0,3,20,0,11,0,0,0,0,0,0,15,4,0,6,14,0,4,0,4,0,2,0,0,13,0,8,0

	
		

		2, Position,0,100000,200000,300000,400000,500000,600000,700000,800000,900000,1000000,1100000,1200000,1300000,1400000,1500000,1600000,1700000,1800000,1900000,2000000,2100000,2200000,2300000,2400000,2500000,2600000,2700000,2800000,2900000,3000000,3100000,3200000,3300000,3400000,3500000,3600000,3700000,3800000,3900000,4000000,4100000,4200000,4300000,4400000,4500000,4600000,4700000,4800000,4900000,5000000,5100000,5200000,5300000,5400000,5500000,5600000,5700000,5800000,5900000,6000000,6100000,6200000,6300000,6400000,6500000,6600000,6700000,6800000,6900000,7000000,7100000,7200000,7300000,7400000,7500000,7600000,7700000,7800000,7900000,8000000,8100000,8200000,8300000,8400000,8500000,8600000,8700000,8800000,8900000,9000000,9100000,9200000,9300000,9400000,9500000,9600000,9700000,9800000,9900000,10000000,10100000,10200000,10300000,10400000,10500000,10600000,10700000,10800000,10900000,11000000,11100000,11200000,11300000,11400000,11500000,11600000,11700000,11800000,11900000,12000000,12100000,12200000,12300000,12400000,12500000,12600000,12700000,12800000,12900000,13000000,13100000,13200000,13300000,13400000,13500000,13600000,13700000,13800000,13900000,14000000,14100000,14200000,14300000,14400000,14500000,14600000,14700000,14800000,14900000,15000000,15100000,15200000,15300000,15400000,15500000,15600000,15700000,15800000,15900000,16000000,16100000,16200000,16300000,16400000,16500000,16600000,16700000,16800000,16900000,17000000,17100000,17200000,17300000,17400000,17500000,17600000,17700000,17800000,17900000,18000000,18100000,18200000,18300000,18400000,18500000,18600000,18700000,18800000,18900000,19000000,19100000,19200000,19300000,19400000,19500000,19600000,19700000,19800000,19900000,20000000,20100000,20200000,20300000,20400000,20500000,20600000,20700000,20800000,20900000,21000000,21100000,21200000,21300000,21400000,21500000,21600000,21700000,21800000,21900000,22000000,22100000,22200000,22300000,22400000,22500000,22600000,22700000,22800000,22900000,23000000,23100000,23200000,23300000,23400000,23500000,23600000,23700000,23800000,23900000,24000000,24100000,24200000,24300000,24400000,24500000,24600000,24700000,24800000,24900000,25000000,25100000,25200000,25300000,25400000,25500000,25600000,25700000,25800000,25900000,26000000,26100000,26200000,26300000,26400000,26500000,26600000,26700000,26800000,26900000,27000000,27100000,27200000,27300000,27400000,27500000,27600000,27700000,27800000,27900000,28000000,28100000,28200000,28300000,28400000,28500000,28600000,28700000,28800000,28900000,29000000,29100000,29200000,29300000,29400000,29500000
2,Count,1,0,0,0,0,0,0,0,0,0,5,0,0,0,0,0,0,0,0,0,0,0,1,0,26,0,0,6,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7,0,0,0,0,0,0,0,0,21,0,0,0,0,0,0,0,8,0,0,0,2,0,1,0,0,2,7,12,0,0,0,0,0,0,0,3,0,0,0,1,0,0,0,0,0,0,0,0,0,0,1,0,2,11,10,0,0,4,0,8,4,0,0,5,0,0,0,0,0,0,0,0,5,0,0,5,0,0,0,0,0,19,0,2,11,3,0,8,10,0,1,0,0,9,0,1,4,18,10,0,25,3,9,0,13,18,0,7,0,3,3,7,25,10,9,5,5,12,10,9,0,0,0,27,5,0,3,5,0,10,7,1,1,7,19,21,7,21,9,22,2,5,8,4,20,0,14,10,12,4,25,0,1,12,11,3,7,14,16,2,6,1,23,1,2,3,4,0,8,10,19,5,15,0,0,4,9,53,11,19,0,32,12,14,22,2,19,8,14,4,9,10,8,6,14,13,19,11,12,9,11,1,5,12,12,20,14,5,9,5,11,0,8,3,16,8,0,11,15,11,10,11,6,5,0,10,14,10,2,18,16,4,0,1,11,2,7,2,11,23,26,9,21,6,22,16,0,5,0,0

	
		

		3, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000
3,Count,117,155,111,105,142,57,101,137,69,79,44,21,5,45,43,27,4,38,46,22,35,12,27,43,90,108,83,65,132,137,122,91,72,115,108,0

	
		

		4, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000
4,Count,75,76,76,78,85,116,154,131,67,70,103,84,5,14,13,17,4,34,18,28,40,14,96,82,113,86,97,105,65,79,150,149,108,131,177,89,115,2

	
		

		5, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000
5,Count,131,79,62,78,116,61,154,75,111,86,101,40,6,0,5,26,22,16,17,78,14,41,22,26,22,30,3,15,10,0,5,13,78,62,41,42,86,156,70,136,121,105

	
		

		6, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000
6,Count,98,140,151,80,86,120,235,116,104,106,109,140,114,96,33,81,17,85,11,22,28,23,35,9,16,70,24,4,57,109,142,133,138,87,115,145,97,54

	
		

		7, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000
7,Count,134,88,131,183,106,73,129,136,81,69,123,62,22,5,0,36,32,8,0,0,11,10,11,0,15,8,21,104,53,48,177,175,125,131,136,0

	
		

		8, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000
8,Count,74,84,136,114,107,134,66,99,76,61,48,18,13,28,48,59,17,5,20,0,14,10,28,15,14,26,11,24,24,4,7,6,57,78,61,104,67,108,93,158,119,99,67,73,93

	
		

		9, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000
9,Count,73,158,86,80,111,111,116,111,69,170,41,67,85,48,16,3,18,9,7,22,7,4,5,2,11,17,10,21,14,52,5,49,49,42,94,162,107,110,77,87,78,26

	
		

		10, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000
10,Count,9,31,8,18,54,17,26,50,19,5,5,0,7,5,61,44,47,46,7,11,4,43,48,131,134,102,125,115,111,137,116,122,123,141,181,113,113,67

	
		

		11, Position,0,100000,200000,300000,400000,500000,600000,700000,800000,900000,1000000,1100000,1200000,1300000,1400000,1500000,1600000,1700000,1800000,1900000,2000000,2100000,2200000,2300000,2400000,2500000,2600000,2700000,2800000,2900000,3000000,3100000,3200000,3300000,3400000,3500000,3600000,3700000,3800000,3900000,4000000,4100000,4200000,4300000,4400000,4500000,4600000,4700000,4800000,4900000,5000000,5100000,5200000,5300000,5400000,5500000,5600000,5700000,5800000,5900000,6000000,6100000,6200000,6300000,6400000,6500000,6600000,6700000,6800000,6900000,7000000,7100000,7200000,7300000,7400000,7500000,7600000,7700000,7800000,7900000,8000000,8100000,8200000,8300000,8400000,8500000,8600000,8700000,8800000,8900000,9000000,9100000,9200000,9300000,9400000,9500000,9600000,9700000,9800000,9900000,10000000,10100000,10200000,10300000,10400000,10500000,10600000,10700000,10800000,10900000,11000000,11100000,11200000,11300000,11400000,11500000,11600000,11700000,11800000,11900000,12000000,12100000,12200000,12300000,12400000,12500000,12600000,12700000,12800000,12900000,13000000,13100000,13200000,13300000,13400000,13500000,13600000,13700000,13800000,13900000,14000000,14100000,14200000,14300000,14400000,14500000,14600000,14700000,14800000,14900000,15000000,15100000,15200000,15300000,15400000,15500000,15600000,15700000,15800000,15900000,16000000,16100000,16200000,16300000,16400000,16500000,16600000,16700000,16800000,16900000,17000000,17100000,17200000,17300000,17400000,17500000,17600000,17700000,17800000,17900000,18000000,18100000,18200000,18300000,18400000,18500000,18600000,18700000,18800000,18900000,19000000,19100000,19200000,19300000,19400000,19500000,19600000,19700000,19800000,19900000,20000000,20100000,20200000,20300000,20400000,20500000,20600000,20700000,20800000,20900000,21000000,21100000,21200000,21300000,21400000,21500000,21600000,21700000,21800000,21900000,22000000,22100000,22200000,22300000,22400000,22500000,22600000,22700000,22800000,22900000,23000000,23100000,23200000,23300000,23400000,23500000,23600000,23700000,23800000,23900000,24000000,24100000,24200000,24300000,24400000,24500000,24600000,24700000,24800000,24900000,25000000,25100000,25200000,25300000,25400000,25500000,25600000,25700000,25800000,25900000,26000000,26100000,26200000,26300000,26400000,26500000,26600000,26700000,26800000,26900000,27000000,27100000,27200000,27300000,27400000,27500000,27600000,27700000,27800000,27900000
11,Count,4,0,4,7,0,20,15,22,8,24,17,0,7,0,15,13,8,0,0,0,7,9,1,16,11,16,7,4,0,4,4,0,8,3,26,10,10,6,21,26,6,38,19,3,16,0,1,16,22,0,0,8,0,0,15,16,0,11,11,31,2,13,2,21,3,0,11,7,5,9,9,10,6,9,8,13,4,3,0,0,3,0,0,0,1,0,8,0,0,0,3,11,0,10,14,2,0,3,8,1,6,4,8,8,1,0,0,5,13,1,2,3,5,1,0,0,0,4,15,0,0,0,0,0,0,6,11,2,5,5,0,0,0,2,8,0,7,0,4,0,5,0,0,0,1,3,0,23,4,0,8,0,0,0,0,0,0,0,6,2,0,6,23,0,11,14,6,3,2,1,9,0,0,3,0,2,7,13,0,0,0,4,0,0,0,0,2,14,0,4,0,1,0,1,2,8,1,0,0,0,22,1,2,20,7,7,9,2,3,6,7,21,10,17,11,0,6,15,11,7,11,14,26,33,13,8,6,0,3,19,11,27,3,8,0,11,10,1,10,7,10,0,15,35,6,16,6,12,9,24,19,19,28,23,14,21,29,25,37,25,17,1,6,9,10,61,3,4,16,14,10,39,5,7,0,13,8,15,5,0

	
		

		Un_random, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000
Un_random,Count,14,8,8,26,7,6,12,4,10,9,7,8,4,9,0,7,10,5,7,0,15,6,3,15,10,2,4,14,5,8,60,13,14,10,14,7,5,6,5,16,1,13,20,19,10,0,0
Details by gene

Here you can find a tab-separated table.