Chromosome,Position,Reference,Variant,Gene.ID,Gene.name,Strand,Reference.codon,Variant.codon,Reference.AA,Variant.AA,Codon.position,C1.10,C2.10,C3.10,C4.10,C5.10,E1.10,E2.10,E3.10,E4.10,E5.10,C1.5,C2.5,C3.5,C4.5,C5.5,E1.5,E2.5,E3.5,E4.5,E5.5
NC_017316.1,12611,G,A,OG1RF_RS00060,DHH family phosphoesterase,1,GCG,ACG,A,T,1,0,0,0,0.2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,27611,G,A,OG1RF_RS00125,hypothetical protein,-1,TGT,TAT,C,Y,2,0,0,0,0,0,0,0.125,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,100222,C,T,OG1RF_RS00440,cell surface protein,1,AGC,AGT,S,S,3,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,144619,C,T,OG1RF_RS00655,hypothetical protein,1,GCC,GCT,A,A,3,0,0,0,0,0,0,0,0,0,0.1,0,0,0,0,0,0,0,0,0,0
NC_017316.1,321843,C,A,OG1RF_RS01685,multidrug transporter,-1,TCC,TAC,S,Y,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0
NC_017316.1,396903,G,A,OG1RF_RS02080,LacI family transcriptional regulator,1,GCG,ACG,A,T,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275,0
NC_017316.1,495652,G,A,OG1RF_RS02520,nicotinamide mononucleotide transporter PnuC,1,CTG,CTA,L,L,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0
NC_017316.1,665142,G,T,OG1RF_RS03265,bifunctional acetaldehyde-CoA/alcohol dehydrogenase,1,GCT,TCT,A,S,1,0,0,0,0,0,0,0.1,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,687035,C,A,OG1RF_RS03385,hypothetical protein,1,CTA,ATA,L,I,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0
NC_017316.1,708115,G,A,OG1RF_RS03485,peptidase M23,1,CGT,CAT,R,H,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05
NC_017316.1,716744,G,A,OG1RF_RS03535,galactose mutarotase,-1,GTT,ATT,V,I,1,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,763202,G,A,OG1RF_RS03810,ileS,1,TGT,TAT,C,Y,2,0.675,0,0,0,0,0,0,0,0,0,0.175,0,0,0,0,0,0,0,0,0
NC_017316.1,769006,G,T,OG1RF_RS03840,RNA helicase,1,ATG,ATT,M,I,3,0,0,0.425,0,0,0,0,0,0,0,0,0,0.15,0,0,0,0,0,0,0
NC_017316.1,822615,A,T,,,0,,,,,-1,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,822619,T,C,,,0,,,,,-1,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,822626,A,G,,,0,,,,,-1,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,822630,A,T,,,0,,,,,-1,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,823050,T,C,,,0,,,,,-1,0,0.075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,823132,G,A,,,0,,,,,-1,0,0,0,0,0,0,0,0,0,0,0,0,0.075,0,0,0,0,0,0,0
NC_017316.1,823133,A,T,,,0,,,,,-1,0,0,0,0,0,0,0,0,0,0,0,0,0.075,0,0,0,0,0,0,0
NC_017316.1,840921,C,A,OG1RF_RS04210,membrane protein,1,GCA,GAA,A,E,2,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,866204,T,A,,,0,,,,,-1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0
NC_017316.1,866205,ATCTG,A,,,0,,,,,-1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0
NC_017316.1,866209,G,GAAAA,,,0,,,,,-1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0
NC_017316.1,963095,C,A,,,0,,,,,-1,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0
NC_017316.1,963102,C,A,,,0,,,,,-1,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0
NC_017316.1,963103,G,A,,,0,,,,,-1,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0
NC_017316.1,1063726,A,T,OG1RF_RS05300,hypothetical protein,-1,ATT,TTT,I,F,1,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0.025,0,0,0
NC_017316.1,1063735,TCG,T,OG1RF_RS05300,hypothetical protein,-1,TCG,-,S,-,1,0,0,0,0,0,0,0.025,0,0,0,0,0,0.05,0,0,0,0,0,0,0
NC_017316.1,1063737,G,GTTTTTTTTTTTTTTTTTTTT,OG1RF_RS05300,hypothetical protein,-1,TCG,-,S,-,3,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0
NC_017316.1,1108593,G,A,OG1RF_RS05535,PadR family transcriptional regulator,1,ATG,ATA,M,I,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0.025,0,0,0,0
NC_017316.1,1120269,G,T,OG1RF_RS05590,dnaK,1,GCT,TCT,A,S,1,0,0,0,0,0,0,0,0,0.1,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,1142731,C,T,OG1RF_RS05700,2-hydroxyglutaryl-CoA dehydratase,1,GGC,GGT,G,G,3,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,1190499,C,A,,,0,,,,,-1,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,1194063,AGCACCTAAAGCGGAAGCAGCT,A,OG1RF_RS05930,dihydrolipoamide acetyltransferase,1,GCA,-,A,-,3,0,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,1210254,ATTTCCGATG,A,,,0,,,,,-1,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0.025,0,0
NC_017316.1,1210263,G,GAAAAAAAAA,,,0,,,,,-1,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0.025,0,0
NC_017316.1,1245088,C,T,OG1RF_RS06175,colicin V production protein CvpA,1,ACG,ATG,T,M,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1,0,0,0
NC_017316.1,1310130,G,T,,,0,,,,,-1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0
NC_017316.1,1317832,GT,G,,,0,,,,,-1,0,0,0,0,0,0,0.925,0,0,0.475,0,0,0,0,0,0,0.45,0,0,0
NC_017316.1,1345266,G,A,OG1RF_RS06655,Cro/Cl family transcriptional regulator,1,TGG,TGA,W,*,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0
NC_017316.1,1383178,G,C,OG1RF_RS06830,6-phospho-beta-glucosidase,-1,CCG,CCC,P,P,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0
NC_017316.1,1399022,C,T,,,0,,,,,-1,0.025,0,0,0.05,0,0,0.025,0,0.025,0,0,0,0.05,0.025,0,0.025,0,0.025,0,0.025
NC_017316.1,1400745,C,T,OG1RF_RS06895,ethanolamine utilization protein EutN,-1,GCC,GCT,A,A,3,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0,0,0
NC_017316.1,1402371,G,C,OG1RF_RS06910,hypothetical protein,-1,GAC,CAC,D,H,1,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0,0
NC_017316.1,1420644,G,A,OG1RF_RS07005,transcriptional repressor CodY,-1,TTG,TTA,L,L,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0
NC_017316.1,1465495,AT,A,OG1RF_RS07240,hypothetical protein,-1,CAT,-,H,-,2,0,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,1547103,G,C,OG1RF_RS07655,purH,-1,TGA,TCA,*,S,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075
NC_017316.1,1573630,G,T,OG1RF_RS07775,beta-galactosidase,-1,GCC,TCC,A,S,1,0,0,0,0,0,0,0,0,0,0.025,0,0,0,0,0,0,0,0,0,0.05
NC_017316.1,1617044,G,T,OG1RF_RS07935,1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate carboxylase,1,GAA,TAA,E,*,1,0,0,0,0.2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,1712344,C,A,OG1RF_RS08425,hypothetical protein,1,TCA,TAA,S,*,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.55,0
NC_017316.1,1717072,T,TCGGTGGTCGC,OG1RF_RS08465,competence protein ComG,-1,CTC,-,L,-,2,0,0.075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,1717074,G,GGTGGTCGCCGTATCATTAAAAAAA,OG1RF_RS08465,competence protein ComG,-1,GAT,-,D,-,1,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0
NC_017316.1,1717074,G,GGTGGTCGCCGTATCATTAAAAAAAAA,OG1RF_RS08465,competence protein ComG,-1,GAT,-,D,-,1,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0.05
NC_017316.1,1717074,G,GGTGGTCGCCGTATCATTAAAAAAAA,OG1RF_RS08465,competence protein ComG,-1,GAT,-,D,-,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0
NC_017316.1,1717076,T,TGG,OG1RF_RS08465,competence protein ComG,-1,GAT,-,D,-,3,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,1750854,G,T,OG1RF_RS08605,membrane protein,1,GCT,TCT,A,S,1,0,0,0,0,0,0,0,0.2,0,0,0,0,0,0,0,0,0,0.125,0,0
NC_017316.1,1787496,C,A,,,0,,,,,-1,0,0.25,0,0,0,0,0,0,0,0,0,0.25,0,0,0,0,0,0,0,0
NC_017316.1,1796656,G,A,,,0,,,,,-1,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0
NC_017316.1,1807271,A,T,OG1RF_RS08830,glycosyl transferase family 2,-1,AAT,TAT,N,Y,1,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0,0
NC_017316.1,1807272,A,T,OG1RF_RS08830,glycosyl transferase family 2,-1,AAT,ATT,N,I,2,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0,0
NC_017316.1,1848356,G,A,OG1RF_RS13215,cell wall surface anchor family protein,-1,GGC,AGC,G,S,1,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0,0,0,0,0,0
NC_017316.1,1848743,A,G,OG1RF_RS13215,cell wall surface anchor family protein,-1,ACC,GCC,T,A,1,0.025,0,0,0.025,0,0,0.025,0.05,0.025,0.025,0,0,0,0.025,0,0,0,0,0,0
NC_017316.1,1872619,C,T,OG1RF_RS09105,hypothetical protein,-1,AAC,AAT,N,N,3,0,0,0,0,0,0,0,0.625,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,1895280,A,AATTGAACTAACCCGACATTTTGAGAGAAACCTGTAT,OG1RF_RS09200,xanthine permease,-1,TAA,-,*,-,2,0,0,0,0.575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,1945378,G,A,OG1RF_RS09430,era,-1,GTG,GTA,V,V,3,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0.65,0,0,0,0
NC_017316.1,1952046,T,TA,OG1RF_RS09470,phosphotransferase,1,TAA,-,*,-,1,0.075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,2033084,G,T,,,,,,,,,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05
NC_017316.1,2069087,C,A,OG1RF_RS10020,PLP-dependent lyase/thiolase,-1,GGC,GGA,G,G,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175,0
NC_017316.1,2084379,G,A,OG1RF_RS10085,multidrug ABC transporter ATP-binding protein,-1,TGC,TAC,C,Y,2,0,0,0,0,0,0,0,0,0,0,0,0.25,0,0,0,0,0,0,0,0
NC_017316.1,2152729,AT,A,OG1RF_RS10415,50S rRNA methyltransferase,-1,CAT,-,H,-,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0,0
NC_017316.1,2353107,A,G,OG1RF_RS11435,valS,-1,ATT,GTT,I,V,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.525,0
NC_017316.1,2458960,C,A,OG1RF_RS11930,protein-tyrosine-phosphatase,-1,ACC,ACA,T,T,3,0,0.175,0,0,0,0,0,0,0,0,0,0.275,0,0,0,0,0,0,0,0
NC_017316.1,2501430,G,A,,,0,,,,,-1,0,0,0,0,0,0,0,0,0.1,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,2502191,C,T,,,0,,,,,-1,0,0,0,0,0.025,0,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0
NC_017316.1,2506615,C,A,OG1RF_RS12140,peptide ABC transporter ATP-binding protein,-1,GCT,GAT,A,D,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05,0
NC_017316.1,2519898,G,T,OG1RF_RS12200,thiamine pyrophosphokinase,-1,CGG,CGT,R,R,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2,0,0,0,0
NC_017316.1,2576425,C,T,OG1RF_RS12470,damage-inducible protein A,-1,TCC,TCT,S,S,3,0,0,0,0,0,0,0,0,0,0,0,0,0.2,0,0,0,0,0,0,0
NC_017316.1,2595770,A,G,OG1RF_RS12560,isochorismatase,1,GAC,GGC,D,G,2,0,0,0,0,0,0,0.075,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.2,2603433,G,T,,,0,,,,,-1,0,0,0.175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
NC_017316.1,2691574,G,A,,,0,,,,,-1,0,0,0,0,0.05,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0