Fig 5 - Group 1,Fig 5 - Group 2,Fig 5 - Group 3,Fig 5 - Group 4,Tachyzoite Top 200 Gene TPM,Bradyzoite 28DPI Top 200 Gene TPM,Bradyzoite 90DPI Top 200 Gene TPM,Bradyzoite 120DPI Top 200 Gene TPM,Differentially Expressed 90DPI vs 28DPI All,Differentially Expressed 90DPI vs 28DPI Up,Differentially Expressed 90DPI vs 28DPI Down,Differentially Expressed 120DPI vs 28DPI All,Differentially Expressed 120DPI vs 28DPI  Up,Differentially Expressed 120DPI vs 28DPI Down, 
GO:0031497 chromatin assembly,GO:0016052 carbohydrate catabolic process,N/A,N/A,GO:0006412 translation,GO:0006412 translation,GO:0006412 translation,GO:0006412 translation,GO:0006464 cellular protein modification process,GO:0051704 multi-organism process,GO:0006468 protein phosphorylation,N/A,N/A,GO:0006468 protein phosphorylation, 
GO:0006334 nucleosome assembly,GO:0042866 pyruvate biosynthetic process, ,,GO:0043043 peptide biosynthetic process,GO:0043043 peptide biosynthetic process,GO:0043043 peptide biosynthetic process,GO:0043043 peptide biosynthetic process,GO:0036211 protein modification process,GO:0044419 interspecies interaction between organisms,GO:0006464 cellular protein modification process, , ,GO:0016310 phosphorylation, 
GO:0065004 protein-DNA complex assembly,GO:0006757 ATP generation from ADP, ,,GO:0043604 amide biosynthetic process,GO:0006518 peptide metabolic process,GO:0006518 peptide metabolic process,GO:0006518 peptide metabolic process,GO:0006468 protein phosphorylation,GO:0009405 pathogenesis,GO:0036211 protein modification process, , ,GO:0036211 protein modification process, 
GO:0005975 carbohydrate metabolic process,GO:0006096 glycolytic process, ,,GO:0006518 peptide metabolic process,GO:0043604 amide biosynthetic process,GO:0043604 amide biosynthetic process,GO:0043604 amide biosynthetic process,GO:0007018 microtubule-based movement, ,GO:0016310 phosphorylation, , ,GO:0006464 cellular protein modification process, 
GO:0044419 interspecies interaction between organisms,GO:0009179 purine ribonucleoside diphosphate metabolic process, ,,GO:0043603 cellular amide metabolic process,GO:0043603 cellular amide metabolic process,GO:0043603 cellular amide metabolic process,GO:0043603 cellular amide metabolic process,GO:0043412 macromolecule modification, ,GO:0043412 macromolecule modification, , ,GO:0043412 macromolecule modification, 
GO:0034728 nucleosome organization,GO:0009185 ribonucleoside diphosphate metabolic process, ,,GO:1901566 organonitrogen compound biosynthetic process,GO:1901566 organonitrogen compound biosynthetic process,GO:1901566 organonitrogen compound biosynthetic process,GO:1901566 organonitrogen compound biosynthetic process,GO:0006928 movement of cell or subcellular component, ,GO:0006793 phosphorus metabolic process, , ,GO:0006793 phosphorus metabolic process, 
GO:0006323 DNA packaging,GO:0009135 purine nucleoside diphosphate metabolic process, ,,GO:0044271 cellular nitrogen compound biosynthetic process,GO:0044271 cellular nitrogen compound biosynthetic process,GO:0044271 cellular nitrogen compound biosynthetic process,GO:0044271 cellular nitrogen compound biosynthetic process,GO:0016310 phosphorylation, ,GO:0006796 phosphate-containing compound metabolic process, , ,GO:0006796 phosphate-containing compound metabolic process, 
GO:0006333 chromatin assembly or disassembly,GO:0046031 ADP metabolic process, ,,GO:0034645 cellular macromolecule biosynthetic process,GO:0019538 protein metabolic process,GO:0019538 protein metabolic process,GO:0019538 protein metabolic process, ,,,,,GO:0006184 obsolete GTP catabolic process, 
GO:0071824 protein-DNA complex subunit organization,GO:0019363 pyridine nucleotide biosynthetic process, ,,GO:0009059 macromolecule biosynthetic process,GO:0005975 carbohydrate metabolic process,GO:1901564 organonitrogen compound metabolic process,GO:1901564 organonitrogen compound metabolic process, ,,,,,GO:0005975 carbohydrate metabolic process, 
GO:0051704 multi-organism process,GO:0019359 nicotinamide nucleotide biosynthetic process, ,,GO:0044249 cellular biosynthetic process,GO:1901564 organonitrogen compound metabolic process, ,GO:0034645 cellular macromolecule biosynthetic process, ,,,,,GO:0051258 protein polymerization, 
GO:0009405 pathogenesis,GO:0006184 obsolete GTP catabolic process, ,,GO:0010467 gene expression, , ,GO:0009059 macromolecule biosynthetic process, ,,,,,GO:0044264 cellular polysaccharide metabolic process, 
,GO:0046939 nucleotide phosphorylation, ,,GO:1901576 organic substance biosynthetic process, , ,GO:0044267 cellular protein metabolic process, ,,,,,GO:0033692 cellular polysaccharide biosynthetic process, 
,GO:0009166 nucleotide catabolic process, ,,GO:0044267 cellular protein metabolic process, , , ,,,,,,GO:0000271 polysaccharide biosynthetic process, 
,GO:0006090 pyruvate metabolic process, ,,GO:0009058 biosynthetic process, , , ,,,,,,GO:0005976 polysaccharide metabolic process, 
,GO:0006165 nucleoside diphosphate phosphorylation, ,,GO:0019538 protein metabolic process, , , ,,,,,,GO:0034637 cellular carbohydrate biosynthetic process, 
,GO:0019725 cellular homeostasis, ,,GO:1901564 organonitrogen compound metabolic process, , , ,,,,,,GO:0006074 (1->3)-beta-D-glucan metabolic process, 
,GO:0042592 homeostatic process, ,,GO:0034641 cellular nitrogen compound metabolic process, , , ,,,,,,GO:0051273 beta-glucan metabolic process, 
,GO:0034622 cellular protein-containing complex assembly, ,,GO:0044260 cellular macromolecule metabolic process, , , ,,,,,,GO:0051274 beta-glucan biosynthetic process, 
,GO:1901292 nucleoside phosphate catabolic process, ,,GO:0043170 macromolecule metabolic process, , , ,,,,,,GO:0006075 (1->3)-beta-D-glucan biosynthetic process, 
,GO:0072525 pyridine-containing compound biosynthetic process, ,,GO:0044237 cellular metabolic process, , , ,,,,,,GO:0016051 carbohydrate biosynthetic process, 
,GO:0009132 nucleoside diphosphate metabolic process, ,,GO:0006807 nitrogen compound metabolic process, , , ,,,,,,,
,GO:0005975 carbohydrate metabolic process, ,,GO:0044238 primary metabolic process, , , ,,,,,,,
,GO:0065003 protein-containing complex assembly, ,,GO:0071704 organic substance metabolic process, , , ,,,,,,,
,GO:0046434 organophosphate catabolic process, ,,GO:0009987 cellular process, , , ,,,,,,,
,GO:0006164 purine nucleotide biosynthetic process, ,,GO:0008152 metabolic process, , , ,,,,,,,
,GO:0006754 ATP biosynthetic process, ,,GO:0006414 translational elongation, , , ,,,,,,,
,,,,GO:0006165 nucleoside diphosphate phosphorylation, , , ,,,,,,,
,,,,GO:0046939 nucleotide phosphorylation, , , ,,,,,,,
,,,,GO:0009132 nucleoside diphosphate metabolic process, , , ,,,,,,,