Peptide PhyloCSF region ID GENCODE gene ID GENCODE transcript ID Tissues (no. PSMs) Total PSMs RNA expression notes Notes Category EAVJSJYR PhyloCSF_chr22:39504207-39504446+_1 ENSG00000285025 ENST00000637854 kidney(1),cd8tcells(1),nkcells(1),heart(1), 4 All sources support general expression protein-coding gene protein-coding gene YTDRDFYFASJR PhyloCSF_chr22:39504207-39504446+_1 ENSG00000285025 kidney(1),adrenal_gland(1),heart(1),nkcells(1), 4 QASJEKPGNDJESPJJNNJDQTJHR PhyloCSF_chr1:173636908-173636934+_1 ENSG00000232113 ENST00000417563 testis(1), 1 All sources support testis expression protein-coding gene protein-coding gene EYAPEATJEAQPSJR PhyloCSF_chr17:55511098-55511337-_1 ENSG00000261873 ENST00000636752 retina(1), 1 CAGE supports pineal gland and eye expression; HPA supports testis expression; top ranked Intropolis experiment is retina (SRR060734) protein-coding gene protein-coding gene GPGJSJGDPAPJGK PhyloCSF_chr17:55511098-55511337-_1 ENSG00000261873 retina(2), 2 JQTVHHNADVYQAVSK PhyloCSF_chr10:14842282-14842623+_1 ENSG00000284024 ENST00000640019 retina(3), 3 All sources support general expression protein-coding gene protein-coding gene NQJVTDPDNJMEDAAWAK PhyloCSF_chr10:14842282-14842623+_1 ENSG00000284024 retina(1), 1 RGPAAPGNAJR PhyloCSF_chr2:131035089-131035271+_1 ENSG00000284479 ENST00000635976 frontalcortex(1), 1 CAGE supports brain expression; HPA supports brain expression but also adipose, and weaker general expression; Intropolis has top ranking experiments from brain (e.g. SRR1047869) protein-coding gene protein-coding gene GAAQTPTPPTSK PhyloCSF_chr17:76569085-76569633-_1 ENSG00000284526 ENST00000640006 testis(1), 1 All sources support testis expression protein-coding gene protein-coding gene TSSJNPSPQVQHVPR PhyloCSF_chr17:76569085-76569633-_1 ENSG00000284526 testis(1), 1 GFTAGAFYGTAGSR PhyloCSF_chr12:3200918-3201193+_1 ENSG00000011105 ENST00000640568 heart(1), 1 CAGE supports heart and cerebellum expression TSPAN9 alternative 5' exon coding exon(s) JEQAENTJR PhyloCSF_chr1:92662719-92662868-_1 ENSG00000067208 ENST00000491940 frontalcortex(1), 1 HPA and Intropolis supports general expression EVI5 cassette exon coding exon(s) GPVQQPJEDR PhyloCSF_chr1:21089132-21089212-_1 ENSG00000075151 ENST00000634879 fetal_ovary(1), 1 CAGE and Intropolis is dominant in testis, alongside cancer cells and cell lines EIF4G3 cassette exon coding exon(s) YSQEPAFTVATAHYVTESSASR PhyloCSF_chr18:5398651-5398812-_1 ENSG00000082397 ENST00000400111 spinalcord(4),prostate(2),pancreas(1),colon(1), 8 Intropolis supports general expression, weaker in comparison to the intron that splices out the cassette exon EPB41L3 cassette exon coding exon(s) TEQVPESEVJK PhyloCSF_chr18:5398651-5398812-_1 ENSG00000082397 spinalcord(2),rectum(1),colon(1),prostate(1), 5 JJPGJAEYEVJETJADEK PhyloCSF_chr18:5398876-5399016-_1 ENSG00000082397 spinalcord(4),rectum(1), 5 RGPEVQTTQR PhyloCSF_chr18:5398876-5399016-_1 ENSG00000082397 rectum(1),spinalcord(2), 3 VEQPSTTEAJQK PhyloCSF_chr18:5399038-5399316-_1 ENSG00000082397 rectum(1),spinalcord(5),colon(1),prostate(2),urinarybladder(1), 10 MQSFEEJAR PhyloCSF_chr18:5399038-5399316-_1 ENSG00000082397 retina(1), 1 VEVATEEMVGNR PhyloCSF_chr20:36205945-36206034+_1 ENSG00000088367 ENST00000636016 frontalcortex(1), 1 Intropolis supports brain expression e.g. SRR1047868 EPB41L1 multiple coding exons coding exon(s) MJASPEDFESVGEEGPWJR PhyloCSF_chr20:36206050-36206106+_1 ENSG00000088367 frontalcortex(1), 1 AEJSNETDTSFAER PhyloCSF_chr20:36206368-36206505+_1 ENSG00000088367 frontalcortex(1),spinalcord(1),prostate(1),colon(1), 4 DQVGFVVSPATGGER PhyloCSF_chr20:36207271-36207336+_1 ENSG00000088367 frontalcortex(2),spinalcord(1),retina(1), 4 RPPPJTSR PhyloCSF_chr20:36207271-36207336+_1 ENSG00000088367 frontalcortex(1), 1 VVPEEAEGR PhyloCSF_chr20:36207271-36207336+_1 ENSG00000088367 spinalcord(1), 1 JFETHGAETR PhyloCSF_chr20:36207415-36207483+_1 ENSG00000088367 frontalcortex(2),retina(1), 3 EMTSFQAGDQEGSJEDJSK PhyloCSF_chr20:36207415-36207483+_1 ENSG00000088367 retina(1),frontalcortex(1), 2 SJPNDVSSEAPVGQAEQQR PhyloCSF_chr20:36207550-36207624+_1 ENSG00000088367 frontalcortex(2),retina(1), 3 DVAHJGPDPQPPYSR PhyloCSF_chr8:26514326-26514682+_1 ENSG00000092964 ENST00000521913 frontalcortex(22),rectum(2),retina(5),fetal_brain(28),adrenal_gland(1),spinalcord(3),gall_bladder(1),testis(1), 63 CAGE supports brain expression DPYSL2 first coding exon coding exon(s) AAEDEEVPAFFK PhyloCSF_chr8:26514326-26514682+_1 ENSG00000092964 spinalcord(1),fetal_liver(1),gall_bladder(1),prostate(1),pancreas(1),fetal_gut(3),frontalcortex(12),fetal_brain(14),retina(2), 36 FCGMFCPVEGSSENK PhyloCSF_chr8:26514326-26514682+_1 ENSG00000092964 frontalcortex(12),rectum(1),fetal_brain(6),retina(3),pancreas(1),colon(1), 24 AGGEPSVESGR PhyloCSF_chr8:26514326-26514682+_1 ENSG00000092964 rectum(1),spinalcord(3),frontalcortex(6),retina(5),fetal_brain(4), 19 TJDFDSJSVGR PhyloCSF_chr8:26514326-26514682+_1 ENSG00000092964 frontalcortex(1),fetal_brain(15),retina(3), 19 NJGSGSPKPR PhyloCSF_chr8:26514326-26514682+_1 ENSG00000092964 frontalcortex(11), 11 GSGQVVAQQR PhyloCSF_chr8:26514326-26514682+_1 ENSG00000092964 fetal_gut(1),frontalcortex(2),spinalcord(3),fetal_brain(4), 10 RAGGEPSVESGR PhyloCSF_chr8:26514326-26514682+_1 ENSG00000092964 fetal_brain(1),frontalcortex(3), 4 AGGEPSVESGRK PhyloCSF_chr8:26514326-26514682+_1 ENSG00000092964 fetal_brain(1),frontalcortex(2), 3 QKFCGMFCPVEGSSENK PhyloCSF_chr8:26514326-26514682+_1 ENSG00000092964 frontalcortex(3), 3 EJSAEADREPQQJQNYWSEVR PhyloCSF_chr4:2626408-2626581+_1 ENSG00000125386 ENST00000637812 retina(1),bcells(1), 2 Intropolis supports expression in CD34+ cells, alongside cell lines and cancer cells FAM193A 5' extended by 4 coding exons coding exon(s) EDAJNPFJFQGSR PhyloCSF_chr2:73079818-73080018-_1 ENSG00000135631 ENST00000486777 testis(1), 1 Intropolis supports testis expression e.g. ERR315415 RAB11FIP5 2kb cassette exon coding exon(s) ASPTPJASPGK PhyloCSF_chr2:73081261-73081344-_1 ENSG00000135631 testis(1), 1 TQQSKPQPPQPSTGPASR PhyloCSF_chr13:98395479-98395580+_1 ENSG00000152767 ENST00000596580 adrenal_gland(1),pancreas(2),fetal_liver_f01(1), 4 CAGE and intronic data not applicable; HPA read coverage indicates general expression FARP1 alternative final exon coding exon(s) SQTNDNYEGDJTSGVYJJSR PhyloCSF_chr13:98395599-98395670+_1 ENSG00000152767 frontalcortex(1),pancreas(1),adrenal_gland(1), 3 WGQASAAAPEGR PhyloCSF_chr13:98396166-98396204+_1 ENSG00000152767 adrenal_gland(1), 1 FEQNSCJCSEASAJR PhyloCSF_chr13:113407341-113407817-_1 ENSG00000153531 ENST00000612156 fetal_heart(1), 1 Intropolis supports heart expression, e.g. DRR013807 ADPRHL1 alternative final coding exon coding exon(s) FJACTAEPJPAJSJATVVCGPR PhyloCSF_chr13:113407341-113407817-_1 ENSG00000153531 fetal_heart(1), 1 JFJAAEEK PhyloCSF_chr13:113407341-113407817-_1 ENSG00000153531 heart(1), 1 JACDPAAHSJJSSJJJYVTGR PhyloCSF_chr13:113408094-113408186-_1 ENSG00000153531 fetal_heart(1), 1 EAAAAAAAAHQQAJR PhyloCSF_chr14:73718846-73719007-_1 ENSG00000156030 ENST00000423556 cd8tcells(5),cd4tcells(1),pancreas(1),ovary(1),retina(1),testis(2), 11 Intropolis is dominated by cell lines and cancer cells, but also blood cell experiments, e.g. SRR924529, and developmental studies e.g. ERR266343 ELMSAN1 final coding exon EAAAAAAAAHQQAJREESGAGDKG PhyloCSF_chr14:73718846-73719007-_1 ENSG00000156030 fetal_ovary(1),pancreas(1), 2 SSSHEAGJQQGSJGGVYK PhyloCSF_chr14:35688496-35688660-_1 ENSG00000174373 ENST00000637992 ovary(1), 1 CAGE and intronic data not applicable; HPA read coverage indicates general expression RALGAPA1 intronic CDS coding exon(s) SJSETVTHR PhyloCSF_chr14:35688685-35689089-_1 ENSG00000174373 testis(1), 1 TJGDJYAJSWR PhyloCSF_chr5:172356695-172356775-_1 ENSG00000174705 ENST00000636523 fetal_brain(1), 1 Intropolics supports expression in brain and neuronal cells, e.g. SRR921934 SH3PXD2B first coding exon coding exon(s) RPDEEYNEGTSSVQNR PhyloCSF_chr3:88138705-88139073+_1 ENSG00000175105 ENST00000636215 cd8tcells(1),bcells(1), 2 CAGE supports immune cell expression, alongside weaker general expression ZNF654 5' extension coding exon(s) JVQJJQENQEJK PhyloCSF_chr8:144063743-144063934-_1 ENSG00000178814 ENST00000567871 testis(1), 1 CAGE supports testis expression OPLAH alternative first exon coding exon(s) AAAJAPGPAPAPPPR PhyloCSF_chr17:67993533-67993853-_1 ENSG00000186665 ENST00000580729 urinarybladder(1), 1 CAGE and Intropolis are dominated by cell line expression, although both support expression in synovial cells e.g. SRR364314 and there is weak CAGE support for bladder expression C17orf58 upstream ATG coding exon(s) JEMESDYDFTDMDK PhyloCSF_chr2:74218687-74218791-_1 ENSG00000188687 ENST00000637036 retina(1), 1 Intropolis supports eye expression, e.g. SRR548613 SLC4A5 alternative final exon coding exon(s) DSJGGTGDADSJFTSJSER PhyloCSF_chr17:29079734-29081017-_1 ENSG00000196535 ENST00000636100 fetal_heart(4),heart(1),retina(1), 6 Intropolis supports general muscle expression MYO18A alternative final exon coding exon(s) EAPGVEERPSSVVSSJSYR PhyloCSF_chr17:29079734-29081017-_1 ENSG00000196535 fetal_heart(3), 3 SEEPEECGSVR PhyloCSF_chr17:29079734-29081017-_1 ENSG00000196535 fetal_heart(3), 3 SSASAVDEPPSSSVR PhyloCSF_chr17:29079734-29081017-_1 ENSG00000196535 fetal_heart(2),heart(1), 3 GPAAESEETGQTHRPSR PhyloCSF_chr17:29079734-29081017-_1 ENSG00000196535 fetal_heart(2), 2 JTJKDSJGGTGDADSJFTSJSER PhyloCSF_chr17:29079734-29081017-_1 ENSG00000196535 fetal_heart(2), 2 SCJEEWDDGASMAJSEACSQYSHPSJAR PhyloCSF_chr17:29079734-29081017-_1 ENSG00000196535 fetal_heart(2), 2 WGSDFSPASTVSAPVSR PhyloCSF_chr17:29079734-29081017-_1 ENSG00000196535 fetal_heart(2), 2 AGSSJSFSJSGSPGSR PhyloCSF_chr17:29079734-29081017-_1 ENSG00000196535 fetal_heart(1), 1 HSYJDPDJEAAVNEVJSYKPVPFQR PhyloCSF_chr17:29079734-29081017-_1 ENSG00000196535 fetal_heart(1), 1 KSEEPEECGSVR PhyloCSF_chr17:29079734-29081017-_1 ENSG00000196535 fetal_heart(1), 1 VJPSEEJGNAKETPGR PhyloCSF_chr17:29128029-29128415-_1 ENSG00000196535 ENST00000533420 fetal_heart(4), 4 CAGE and Intropolis support general muscle expression MYO18A alternative first exon plus four cassette exons VJPSEEJGNAK PhyloCSF_chr17:29128029-29128415-_1 ENSG00000196535 fetal_heart(1), 1 SFQEAJNJVTTTVGHER PhyloCSF_chr22:25112169-25112471+_1 ENSG00000197077 ENST00000637069 frontalcortex(1), 1 CAGE supports general expression KIAA1671 5' coding exon coding exon(s) EJPJTPVDQAAFJSEVJR PhyloCSF_chr1:43426391-43426525+_1 ENSG00000198198 ENST00000634258 retina(1), 1 Intropolis supports general expression, weaker in comparison to the intron that splices out the cassette exon SZT2 cassette exon coding exon(s) JNDJJQEDTAJAK PhyloCSF_chr3:111720724-111720879+_1 ENSG00000240891 ENST00000636933 retina(1), 1 HPA supports general expression PLCXD2 final coding exon coding exon(s) ADEHJJEJEAEEJAPSR PhyloCSF_chr19:45234195-45234836-_1 ENSG00000283632 ENST00000413988 platelets(1),kidney(2), 3 HPA supports general expression EXOC3L2 extended 5' by two coding exons coding exon(s) ERJEAAAPGAPGGJAGQJEAJR PhyloCSF_chr19:45234195-45234836-_1 ENSG00000283632 platelets(1),adrenal_gland(1), 2 DVAJJYEAJQR PhyloCSF_chr19:45234195-45234836-_1 ENSG00000283632 adrenal_gland(1), 1 EJWAJVR PhyloCSF_chr19:45234195-45234836-_1 ENSG00000283632 platelets(1), 1 JAPAYPAGJGAFGVYJR PhyloCSF_chr19:45234195-45234836-_1 ENSG00000283632 fetal_testis(1), 1 JEAAAPGAPGGJAGQJEAJR PhyloCSF_chr19:45234195-45234836-_1 ENSG00000283632 kidney(1), 1 AHGDEEAAGEAAR PhyloCSF_chr19:45238527-45239048-_1 ENSG00000283632 adrenal_gland(1),platelets(2), 3 JAGJAPFR PhyloCSF_chr19:45238527-45239048-_1 ENSG00000283632 adrenal_gland(1), 1 TJTHQPACSDTPR PhyloCSF_chr1:182390691-182390783-_1 ENSG00000135821 ENST00000642379 testis(1), 1 HPA supports weak general expression GLUL first exon coding exon(s) JJANAAJR PhyloCSF_chr11:57311253-57311354-_1 ENSG00000149115 ENST00000530920 liver(1), 1 HPA supports general expression TNKS1BP1 first exon coding exon(s) JESQEEETJPAAPPAPR PhyloCSF_chr12:64780731-64780913+_1,PhyloCSF_chr12:64780932-64781123+_1 ENSG00000111490 ENST00000544190 pancreas(1), 1 CAGE supports pancreas and blood expression, alongside weaker general expression TBC1D30 5' extension coding exon(s) DSJDSSTEASGSDVVJGGR PhyloCSF_chr12:64781139-64781264+_1 pancreas(1), 1 GRPGSPJAAEETPGR PhyloCSF_chr17:1228806-1229189-_1 ENSG00000159842 ENST00000574139 bcells(3), 3 CAGE supports expression in blood cells ABR 5' extension coding exon(s) GDJPAGPGAAGEAGGGR PhyloCSF_chr17:1229220-1229327-_1 bcells(2), 2 QJJQPQJR PhyloCSF_chr17:1229220-1229327-_1 bcells(1), 1 SWADAVHR PhyloCSF_chr17:1229220-1229327-_1 bcells(1), 1 JQQVJAEEQJK PhyloCSF_chr17:1229472-1229657-_1 cd8tcells(1),bcells(1), 2 EGGGGGDAAAAEGGAGAAASR PhyloCSF_chr17:27456626-27456877+_1 ENSG00000141068 ENST00000644974 platelets(1),fetal_brain(1),retina(1),gall_bladder(1), 4 CAGE supports general expression KSR1 alternative first exons coding exon(s) AJQQCGQJQK PhyloCSF_chr17:27456626-27456877+_1 retina(1),cd8tcells(1), 2 CAVSNDJTQQEJR PhyloCSF_chr17:27456626-27456877+_1 pancreas(1), 1 RPDPAAPSEEGJR PhyloCSF_chr19:48485639-48485755-_1 ENSG00000142235 ENST00000648216 frontalcortex(1), 1 Transcript evidence cannot distinguish the alternative translation; CAGE indicates the gene is brain specific LMTK3 translation in alternative frame coding exon(s) DJSGESPCTQR PhyloCSF_chr19:48497920-48498123-_1 frontalcortex(1), 1 GEGAGEWGPDTPK PhyloCSF_chr19:48497920-48498123-_1 frontalcortex(1), 1 QVHQQEEQPR PhyloCSF_chr6:129292806-129293015+_1 ENSG00000196569 ENST00000645154 heart(2),fetal_heart(2), 4 Intropolis supports expression in fetal heart, e.g. DRR013807, alongside adult heart and other fetal muscles LAMA2 cassette exon coding exon(s) WAJGSSSGCPR PhyloCSF_chr6:129292806-129293015+_1 fetal_heart(1), 1 JJPJGPDGQGGPAAAEPR PhyloCSF_chr18:58256169-58256765+_1 ENSG00000049759 ENST00000635997 heart(1), 1 CAGE supports expression in heart and other muscles NEDD4L 5' extension coding exon(s)